BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034118
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 62.8 bits (151), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 23 RFASNIIFSNGLRDPYSSGGVLENISDSVVAIPTINGSHCLDILAANQSSDPDWLVTQRE 82
R ASNIIFSNG DP++ GG+ N+S SV+A+ G+H LD L A+ DP +V R+
Sbjct: 379 RAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLD-LRASHPEDPASVVEARK 437
Query: 83 TEIDIIEGW 91
E II W
Sbjct: 438 LEATIIGEW 446
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 62.8 bits (151), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 23 RFASNIIFSNGLRDPYSSGGVLENISDSVVAIPTINGSHCLDILAANQSSDPDWLVTQRE 82
R ASNIIFSNG DP++ GG+ N+S SV+A+ G+H LD L A+ DP +V R+
Sbjct: 382 RAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLD-LRASHPEDPASVVEARK 440
Query: 83 TEIDIIEGW 91
E II W
Sbjct: 441 LEATIIGEW 449
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 26 SNIIFSNGLRDPYSSGGVLENISDSVVAIPTINGSHCLDILAANQSSDPDWLVTQRETEI 85
+NI+FSNG DP+S GGV ++I+D++VA+ G+H LD+ N + DP ++ R E+
Sbjct: 375 TNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKN-ALDPMSVLLARSLEV 433
Query: 86 DIIEGWTSKYY 96
++ W +Y
Sbjct: 434 RHMKNWIRDFY 444
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 27 NIIFSNGLRDPYSSGG 42
NII SN RDPYS G
Sbjct: 434 NIIVSNWTRDPYSRGA 449
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 27 NIIFSNGLRDPYSSGG 42
NII SN RDPYS G
Sbjct: 434 NIIVSNWTRDPYSRGA 449
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 27 NIIFSNGLRDPYSSGG 42
NII SN RDPYS G
Sbjct: 434 NIIVSNWTRDPYSRGA 449
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 27 NIIFSNGLRDPYSSGG 42
NII SN RDPYS G
Sbjct: 434 NIIVSNWTRDPYSRGA 449
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 27 NIIFSNGLRDPYSSGG 42
NII SN RDPYS G
Sbjct: 434 NIIVSNWTRDPYSRGA 449
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With
Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 38 YSSGGVL----------ENISDSVVAIPTINGSHCLDILAANQSSDPDWLVTQ 80
Y+ GG+ ++ D+++A I H ++ +A+N S WL+ Q
Sbjct: 48 YAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQ 100
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 38 YSSGGVL----------ENISDSVVAIPTINGSHCLDILAANQSSDPDWLVTQ 80
Y+ GG+ ++ D+++A I H ++ +A+N S WL+ Q
Sbjct: 48 YAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQ 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,854,294
Number of Sequences: 62578
Number of extensions: 95215
Number of successful extensions: 207
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 12
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)