BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034120
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKC9|NDUB7_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
OS=Arabidopsis thaliana GN=At2g02050 PE=3 SV=1
Length = 103
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/103 (78%), Positives = 89/103 (86%)
Query: 1 MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEK 60
MEVPGSSKKMIATQEEM A++ + RD CAHLLIPLNKCRQAEFYLPWKCE+ERH YEK
Sbjct: 1 MEVPGSSKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQAEFYLPWKCEDERHVYEK 60
Query: 61 CEYELVMERMLQMQKIREEEAKLKQSQTQKGAPIPLIPKTANA 103
CEYELVMERML M+KIREEEA KQ++ Q A +PLIPKTANA
Sbjct: 61 CEYELVMERMLAMKKIREEEALAKQNKLQGNAAVPLIPKTANA 103
>sp|Q54V61|NDUB7_DICDI NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
OS=Dictyostelium discoideum GN=ndufb7 PE=3 SV=1
Length = 112
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 5 GSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYE 64
S+KMIATQ++ + +P+ +RD CAHLLIPLN CR + +Y PWKC +E+H+YE C+Y+
Sbjct: 13 DGSRKMIATQQQCEDKNLPLSFRDYCAHLLIPLNDCRVSTYYAPWKCMDEKHAYEGCQYD 72
Query: 65 LVMERMLQMQKIREEEA 81
+ R +++K ++EA
Sbjct: 73 EYLYR--KIKKSEQDEA 87
>sp|Q0MQE2|NDUB7_PONPY NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
OS=Pongo pygmaeus GN=NDUFB7 PE=2 SV=3
Length = 137
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 8 KKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVM 67
++M+ATQ+EM++A++ + RD CAH LI L KC++ F C+ ERH ++ CE+ +
Sbjct: 37 REMVATQQEMMDAQLRLQLRDYCAHYLIRLLKCKRDSFPNFLACKQERHDWDYCEHRDYV 96
Query: 68 ERMLQMQK 75
RM + ++
Sbjct: 97 MRMKEFER 104
>sp|Q0MQE3|NDUB7_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
OS=Gorilla gorilla gorilla GN=NDUFB7 PE=2 SV=3
Length = 137
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 8 KKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVM 67
++M+ATQ+EM++A++ + RD CAH LI L KC++ F C+ ERH ++ CE+ +
Sbjct: 37 REMVATQQEMMDAQLRLQLRDYCAHYLIRLLKCKRDSFPNFLACKQERHDWDYCEHRDYV 96
Query: 68 ERMLQMQK 75
RM + ++
Sbjct: 97 MRMKEFER 104
>sp|Q0MQE4|NDUB7_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pan
troglodytes GN=NDUFB7 PE=2 SV=3
Length = 137
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 8 KKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVM 67
++M+ATQ+EM++A++ + RD CAH LI L KC++ F C+ ERH ++ CE+ +
Sbjct: 37 REMVATQQEMMDAQLRLQLRDYCAHYLIRLLKCKRDSFPNFXACKQERHDWDYCEHRDYV 96
Query: 68 ERMLQMQK 75
RM + ++
Sbjct: 97 MRMKEFER 104
>sp|P17568|NDUB7_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Homo
sapiens GN=NDUFB7 PE=1 SV=4
Length = 137
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 8 KKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVM 67
++M+ATQ+EM++A++ + RD CAH LI L KC++ F C+ ERH ++ CE+ +
Sbjct: 37 REMVATQQEMMDAQLRLQLRDYCAHHLIRLLKCKRDSFPNFLACKQERHDWDYCEHRDYV 96
Query: 68 ERMLQMQK 75
RM + ++
Sbjct: 97 MRMKEFER 104
>sp|Q9CR61|NDUB7_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Mus
musculus GN=Ndufb7 PE=1 SV=3
Length = 137
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 45/66 (68%)
Query: 10 MIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMER 69
M+ATQ+EM++A++ + RD CAH LI L KC++ F C++E+H ++ CE+ ++R
Sbjct: 39 MVATQQEMMDAQLTLQQRDYCAHYLIRLLKCKRDSFPNFLACKHEQHDWDYCEHLDYVKR 98
Query: 70 MLQMQK 75
M + ++
Sbjct: 99 MKEFER 104
>sp|Q02368|NDUB7_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Bos
taurus GN=NDUFB7 PE=1 SV=2
Length = 137
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 45/68 (66%)
Query: 8 KKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVM 67
++M+ATQ+EM +A++ + RD CAH LI KC++ F C++ERH ++ CE+ +
Sbjct: 37 REMVATQQEMNDAQLVLQQRDYCAHYLIRFLKCKRDSFPNFLACKHERHDWDYCEHLDYV 96
Query: 68 ERMLQMQK 75
+RM + ++
Sbjct: 97 KRMKEFER 104
>sp|P90789|NDUB7_CAEEL NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
OS=Caenorhabditis elegans GN=D2030.4 PE=3 SV=1
Length = 123
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCR-QAEFYLPWKCENERHSYE 59
E P ++M AT EEM + ++ RD CAH LI L KC+ Q + C+ ER +++
Sbjct: 33 FERPRKVREMKATWEEMEQWKLKPAQRDYCAHHLISLMKCQTQNAPFAGHACDGERGAWD 92
Query: 60 KCEYELVMERMLQMQKIREEEAKLKQSQTQKGA 92
KCEY+ + R+ + E E +L Q Q +K A
Sbjct: 93 KCEYDDHIMRIKEF----ERERRLLQRQARKEA 121
>sp|Q5XHF3|PHR4B_XENLA Phosphatase and actin regulator 4-B OS=Xenopus laevis
GN=phactr4-b PE=2 SV=1
Length = 697
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 43 AEFYLPWKCENERHSYEKCEYELVMERMLQMQKIREEEAK 82
+F+ PWK + S E + V+ER + M+K REE K
Sbjct: 20 GKFFKPWKWRKRKSSDSFRETQEVLERKISMRKPREELVK 59
>sp|F7EC58|PHAR4_XENTR Phosphatase and actin regulator 4 OS=Xenopus tropicalis
GN=phactr4 PE=2 SV=1
Length = 706
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 43 AEFYLPWKCENERHSYEKCEYELVMERMLQMQKIREEEAK 82
+F+ PWK + S E V+ER + M+K REE K
Sbjct: 20 GKFFKPWKWRKRKSSDSFRETSEVLERKISMRKPREELVK 59
>sp|Q6GQX2|NCK5L_MOUSE Nck-associated protein 5-like OS=Mus musculus GN=Nckap5l PE=2
SV=1
Length = 1323
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 30 CAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYEL---VMERMLQMQKIREEEAKLKQ 85
C LL L + L EN+R +YE+C E+ V++ +L + +REE KLK+
Sbjct: 26 CQELLHRLRELEAENSALAQANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKK 84
>sp|Q9HCH0|NCK5L_HUMAN Nck-associated protein 5-like OS=Homo sapiens GN=NCKAP5L PE=1
SV=2
Length = 1330
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 30 CAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYEL---VMERMLQMQKIREEEAKLKQ 85
C LL L + L EN+R +YE+C E+ V++ +L + +REE KLK+
Sbjct: 26 CQELLHRLRELEAENSALAQANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKK 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,035,433
Number of Sequences: 539616
Number of extensions: 1160059
Number of successful extensions: 3644
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3622
Number of HSP's gapped (non-prelim): 32
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)