Query 034120
Match_columns 103
No_of_seqs 101 out of 143
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:59:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lql_A Coiled-coil-helix-coile 50.3 3 0.0001 28.6 -0.2 36 27-62 58-93 (113)
2 4a17_P RPL21, 60S ribosomal pr 37.0 37 0.0013 24.7 3.8 26 52-80 94-119 (157)
3 3izc_U 60S ribosomal protein R 35.6 38 0.0013 24.7 3.7 26 52-80 94-119 (160)
4 3si5_X Protein CASC5; BUBR1-bl 28.8 27 0.00092 18.3 1.4 10 62-71 12-21 (24)
5 3iz5_U 60S ribosomal protein L 27.2 46 0.0016 24.4 2.9 24 52-78 94-117 (164)
6 2zkr_q 60S ribosomal protein L 19.9 22 0.00076 26.0 0.0 25 52-79 94-118 (160)
7 2hjd_A Quorum-sensing antiacti 12.1 1.8E+02 0.0062 19.8 3.0 21 60-80 66-86 (102)
8 1rfy_A TRAM protein;, transcri 12.0 1.8E+02 0.0062 19.8 3.0 21 60-80 66-86 (102)
9 1ei0_A P8MTCP1; helix-turn-hel 11.0 29 0.00099 19.4 -1.2 33 29-61 2-34 (38)
10 2v7q_J ATPase inhibitor; ION t 7.4 3.4E+02 0.012 17.0 2.7 26 61-86 27-52 (66)
No 1
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=50.27 E-value=3 Score=28.57 Aligned_cols=36 Identities=17% Similarity=0.444 Sum_probs=32.8
Q ss_pred CcchhhhccChhhhhhhccCCCcCCCccccccccch
Q 034120 27 RDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCE 62 (103)
Q Consensus 27 RDyCAh~LI~l~kCr~~~~~~~~~C~hErH~YekCq 62 (103)
+..|+.-+-.|-.|.+.|....+.|..+--.+.+|-
T Consensus 58 ~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Ca 93 (113)
T 2lql_A 58 RQACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCA 93 (113)
T ss_dssp HHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 567999999999999999888899999999999995
No 2
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=37.01 E-value=37 Score=24.74 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=17.7
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHH
Q 034120 52 ENERHSYEKCEYELVMERMLQMQKIREEE 80 (103)
Q Consensus 52 ~hErH~YekCqy~D~~~Rmke~er~r~~~ 80 (103)
+|-+|+ +| -+||+.|+||-++.+.+.
T Consensus 94 EHik~s--k~-r~~flkrvkend~~kkea 119 (157)
T 4a17_P 94 EHVRPS--NV-KTALSKRYQANDQAKAEG 119 (157)
T ss_dssp GGEEEC--HH-HHHHHHHHHHHHHHHHHH
T ss_pred HHcccc--cc-HHHHHHHHHHhHHHHHHH
Confidence 444554 34 379999999988765443
No 3
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=35.56 E-value=38 Score=24.74 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=18.0
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHH
Q 034120 52 ENERHSYEKCEYELVMERMLQMQKIREEE 80 (103)
Q Consensus 52 ~hErH~YekCqy~D~~~Rmke~er~r~~~ 80 (103)
+|-+|+ +| -+||+.|+||-++.+.+.
T Consensus 94 EHik~s--k~-r~~flkrvkend~~kkea 119 (160)
T 3izc_U 94 EHIKHS--KC-RQEFLERVKANAAKRAEA 119 (160)
T ss_dssp TSEEEC--HH-HHHHHHHHHHHHHHHHHH
T ss_pred HHcccc--cc-HHHHHHHHHHhHHHHHHH
Confidence 555665 34 379999999988665443
No 4
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=28.83 E-value=27 Score=18.31 Aligned_cols=10 Identities=10% Similarity=0.464 Sum_probs=8.4
Q ss_pred hHHHHHHHHH
Q 034120 62 EYELVMERML 71 (103)
Q Consensus 62 qy~D~~~Rmk 71 (103)
-+.||+.|+|
T Consensus 12 nfndFIKRLK 21 (24)
T 3si5_X 12 DFNDFIKRLK 21 (26)
T ss_pred cHHHHHHHHh
Confidence 4689999987
No 5
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=27.24 E-value=46 Score=24.42 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=17.3
Q ss_pred CccccccccchHHHHHHHHHHHHHHHH
Q 034120 52 ENERHSYEKCEYELVMERMLQMQKIRE 78 (103)
Q Consensus 52 ~hErH~YekCqy~D~~~Rmke~er~r~ 78 (103)
+|-+|+ +| -+||+.|+||-++.+.
T Consensus 94 EHik~s--k~-r~~Flkrvkend~kkk 117 (164)
T 3iz5_U 94 EHVQPS--RC-NEEFLQRKLNNDKLKA 117 (164)
T ss_dssp GGEEEC--HH-HHHHHHHHHHHHHHHH
T ss_pred HHcccc--cC-HHHHHHHHHHhHHHHH
Confidence 556665 55 5899999999776543
No 6
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=19.92 E-value=22 Score=26.01 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=3.4
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHH
Q 034120 52 ENERHSYEKCEYELVMERMLQMQKIREE 79 (103)
Q Consensus 52 ~hErH~YekCqy~D~~~Rmke~er~r~~ 79 (103)
+|-+|. +|+ +||+.|+||=++.+.+
T Consensus 94 eHik~s--k~r-~~Fl~rvk~n~~~k~e 118 (160)
T 2zkr_q 94 EHIKHS--KSR-DSFLKRVKENDQKKKE 118 (160)
T ss_dssp GGEEEC----------------------
T ss_pred HHcCcc--ccH-HHHHHHHHHhHHHHHH
Confidence 455665 675 6999999998766543
No 7
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=12.07 E-value=1.8e+02 Score=19.84 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 034120 60 KCEYELVMERMLQMQKIREEE 80 (103)
Q Consensus 60 kCqy~D~~~Rmke~er~r~~~ 80 (103)
.=++.+|+.|+++++..-.+-
T Consensus 66 ~~lh~eYi~~~ie~~AQq~~l 86 (102)
T 2hjd_A 66 GEQHLEYIEAMIEMHAQMSAV 86 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999998665444
No 8
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=12.02 E-value=1.8e+02 Score=19.82 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 034120 60 KCEYELVMERMLQMQKIREEE 80 (103)
Q Consensus 60 kCqy~D~~~Rmke~er~r~~~ 80 (103)
.=++.+|+.|+++++..-.+-
T Consensus 66 ~~lh~eYi~~~ie~~AQq~~l 86 (102)
T 1rfy_A 66 GPQHIRYIEASIEMHAQMSAL 86 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 558999999999998665444
No 9
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=11.00 E-value=29 Score=19.42 Aligned_cols=33 Identities=33% Similarity=0.646 Sum_probs=19.3
Q ss_pred chhhhccChhhhhhhccCCCcCCCccccccccc
Q 034120 29 QCAHLLIPLNKCRQAEFYLPWKCENERHSYEKC 61 (103)
Q Consensus 29 yCAh~LI~l~kCr~~~~~~~~~C~hErH~YekC 61 (103)
.|.-.--.+.+|...+.|..=+|..--..+..|
T Consensus 2 pC~~~a~a~q~CL~~n~~d~skCq~~id~l~~C 34 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSYLESKCQAVIQELKKC 34 (38)
T ss_dssp CSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 344444456778888777666666544444443
No 10
>2v7q_J ATPase inhibitor; ION transport, mitochondrion, transit peptide, inhibitor Pro hydrolase; HET: ATP ADP; 2.1A {Bos taurus} SCOP: h.4.8.1
Probab=7.37 E-value=3.4e+02 Score=17.01 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhh
Q 034120 61 CEYELVMERMLQMQKIREEEAKLKQS 86 (103)
Q Consensus 61 Cqy~D~~~Rmke~er~r~~~~~~~~~ 86 (103)
+..+|+.-|-++.|+++.++++++..
T Consensus 27 aA~Ee~Yfrk~ekEQL~~LKkkl~eq 52 (66)
T 2v7q_J 27 QAEEERYFRARAKEQLAALKKHHENE 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777888888888888777544
Done!