Query 034124
Match_columns 103
No_of_seqs 104 out of 173
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 13.7 99 0.0034 18.3 1.9 28 62-89 28-55 (63)
2 2ntx_A EMB|CAB41934.1, prone8; 13.7 1.7E+02 0.0059 23.6 3.7 45 14-58 39-89 (365)
3 2g48_C Islet amyloid polypepti 13.5 1.1E+02 0.0038 16.9 1.8 23 15-37 11-33 (37)
4 3lph_A Protein REV; helix-loop 11.0 1.2E+02 0.0041 19.1 1.7 19 13-31 48-66 (72)
5 2x7l_M HIV REV; nuclear export 10.1 1.7E+02 0.0059 19.9 2.3 20 13-32 45-64 (115)
6 1pq1_B BCL2-like protein 11; B 9.7 17 0.00057 19.8 -2.3 18 43-60 8-27 (33)
7 3ts3_A Capsid polyprotein; vir 9.1 78 0.0027 23.5 0.3 35 26-60 88-125 (208)
8 2hc5_A ORF 99, hypothetical pr 8.8 1.5E+02 0.0051 19.8 1.6 26 3-28 78-106 (117)
9 1toh_A Tyroh, tyrosine hydroxy 8.0 3.2E+02 0.011 21.8 3.4 31 50-80 6-53 (343)
10 2wh6_B BCL-2-like protein 11; 7.6 72 0.0025 16.4 -0.3 16 43-58 8-25 (26)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=13.69 E-value=99 Score=18.26 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=23.6
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhcCCCC
Q 034124 62 KDDPLVMARQQQERLSKLEMLKRRGKGP 89 (103)
Q Consensus 62 r~~g~~~De~e~~R~~~~~~rk~RGKg~ 89 (103)
-++|.|..++|.-+--+....+.+|..+
T Consensus 28 ~~LGtf~T~eeAA~AyD~Aa~~~~G~~a 55 (63)
T 1gcc_A 28 VWLGTFETAEDAALAYDRAAFRMRGSRA 55 (63)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSSCC
T ss_pred EEeeeCCCHHHHHHHHHHHHHHhcCccc
Confidence 3567799999999999999999999764
No 2
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A
Probab=13.67 E-value=1.7e+02 Score=23.56 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCchhHH-hhhcc-----ccccccccCCC
Q 034124 14 VVTTGLTEARAKIFGHVLNPAGQRSPHKI-LRKKL-----IGDKVAGWYPY 58 (103)
Q Consensus 14 ~r~~~l~~ls~rIFg~~~nPt~~Rsg~kv-lr~~l-----kG~~v~~YYP~ 58 (103)
|....+.-|+|.|||+.++-+-.-.-+|. -++.. ....|+.+.|.
T Consensus 39 AiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~IVE~vPs 89 (365)
T 2ntx_A 39 ALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHIVEFVPS 89 (365)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHGGGGGCEEEEEC
T ss_pred HHHhhhhHHHHHHhhhhhccCCCChHHHHHHHHhcceeeeccceeEEeccc
Confidence 45667799999999999998777777776 33333 35777777776
No 3
>2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2l86_A 2kj7_A
Probab=13.47 E-value=1.1e+02 Score=16.91 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhcccCCCCCCC
Q 034124 15 VTTGLTEARAKIFGHVLNPAGQR 37 (103)
Q Consensus 15 r~~~l~~ls~rIFg~~~nPt~~R 37 (103)
||..+-.=|..+++.+|-||++=
T Consensus 11 rla~~LsrSg~~~~~nf~PT~VG 33 (37)
T 2g48_C 11 RLANFLVHSSNNFGAILSSTNVG 33 (37)
T ss_pred HHHHHHHhhccccccccCCCcCC
Confidence 33344444667899999999873
No 4
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=11.01 E-value=1.2e+02 Score=19.12 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhhcccC
Q 034124 13 TVVTTGLTEARAKIFGHVL 31 (103)
Q Consensus 13 ~~r~~~l~~ls~rIFg~~~ 31 (103)
.+|-.++..||.+||.+.+
T Consensus 48 R~RQrQI~~is~rIl~t~l 66 (72)
T 3lph_A 48 RERQRQIHSISERIRSTYL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4677889999999998765
No 5
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=10.10 E-value=1.7e+02 Score=19.92 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhhcccCC
Q 034124 13 TVVTTGLTEARAKIFGHVLN 32 (103)
Q Consensus 13 ~~r~~~l~~ls~rIFg~~~n 32 (103)
.+|-.++..||.+||.+.+.
T Consensus 45 R~RQrQI~~iseRILst~lg 64 (115)
T 2x7l_M 45 RERQRQIHSISERILSTYLG 64 (115)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhcccCC
Confidence 46788999999999998764
No 6
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=9.74 E-value=17 Score=19.83 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=13.1
Q ss_pred hhhcc--ccccccccCCCCC
Q 034124 43 LRKKL--IGDKVAGWYPYDI 60 (103)
Q Consensus 43 lr~~l--kG~~v~~YYP~~~ 60 (103)
+.|.| +|.+...|||..+
T Consensus 8 IAQELRRIGDeFNa~ypRR~ 27 (33)
T 1pq1_B 8 IAQELRRIGDEFNETYTRRV 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhcccchHH
Confidence 44555 6888999999743
No 7
>3ts3_A Capsid polyprotein; virus protein, projection domain, astrovirus capsid, viral P; 1.49A {Turkey astrovirus 2}
Probab=9.12 E-value=78 Score=23.48 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=22.3
Q ss_pred hhcccCCCCCCCchhHHhhhccc---cccccccCCCCC
Q 034124 26 IFGHVLNPAGQRSPHKILRKKLI---GDKVAGWYPYDI 60 (103)
Q Consensus 26 IFg~~~nPt~~Rsg~kvlr~~lk---G~~v~~YYP~~~ 60 (103)
|||...--.++=---|-|.+..+ .|+|..|||...
T Consensus 88 iFgqp~~GvGVIqTmKTLkqhikd~tePavkkyyP~Tt 125 (208)
T 3ts3_A 88 LFGQPRLGVGVMQTMKTLKQHIKDYTEPAIQKYYPGTT 125 (208)
T ss_dssp EEECGGGCCCEEEEHHHHTTTTTCTTSTTEEEBCGGGC
T ss_pred EecccccccchhhhHHHHHHHhcccccchhhhcCCCcc
Confidence 67765444443333355777775 489999999854
No 8
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=8.78 E-value=1.5e+02 Score=19.77 Aligned_cols=26 Identities=12% Similarity=-0.038 Sum_probs=17.3
Q ss_pred cchhhhhhhhHHHHHHHH---HHHHhhhc
Q 034124 3 TGGRLKNILATVVTTGLT---EARAKIFG 28 (103)
Q Consensus 3 ~~~~~~~~~s~~r~~~l~---~ls~rIFg 28 (103)
|.-+++.+|+.+.|.=++ .+..-||.
T Consensus 78 TgEVIRqIPpEe~L~l~~~l~e~~Gll~D 106 (117)
T 2hc5_A 78 TNEVIREIPPKRWLDFYAAMTEFLGLFVD 106 (117)
T ss_dssp TTEEEEEECHHHHHHHHHHHHHHHHHHSC
T ss_pred CCcEEEeCChHHHHHHHHHHHHhhceeec
Confidence 567889999998877444 44444444
No 9
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, P substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Probab=8.04 E-value=3.2e+02 Score=21.80 Aligned_cols=31 Identities=16% Similarity=0.412 Sum_probs=18.7
Q ss_pred ccccccCCCCCC-----------------ccCCCCCChHHHHHHHHHH
Q 034124 50 DKVAGWYPYDIK-----------------KDDPLVMARQQQERLSKLE 80 (103)
Q Consensus 50 ~~v~~YYP~~~~-----------------r~~g~~~De~e~~R~~~~~ 80 (103)
...+-|||.++. ..+|+|-|+.=-.|..++.
T Consensus 6 ~~~~pwfpr~i~dld~~~~~~~~~~~~l~~dHpgf~D~~Yr~RR~~~a 53 (343)
T 1toh_A 6 EDKVPWFPRKVSELDKCHHLVTKFDPDLDLDHPGFSDQVYRQRRKLIA 53 (343)
T ss_dssp --CCCCCCSBGGGGGGC-----------CTTSTTTTCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHhhhchheeccCccCCCCCCCCCHHHHHHHHHHH
Confidence 456679999763 4567788875554544443
No 10
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=7.57 E-value=72 Score=16.39 Aligned_cols=16 Identities=31% Similarity=0.752 Sum_probs=8.1
Q ss_pred hhhcc--ccccccccCCC
Q 034124 43 LRKKL--IGDKVAGWYPY 58 (103)
Q Consensus 43 lr~~l--kG~~v~~YYP~ 58 (103)
+.|.| +|.+...|||.
T Consensus 8 iAqELRRIGDeFN~~y~r 25 (26)
T 2wh6_B 8 IAQELRRIGDEFNAYYAR 25 (26)
T ss_dssp HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHhHHHhhhccC
Confidence 44445 57777777775
Done!