Query 034124
Match_columns 103
No_of_seqs 104 out of 173
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 17:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034124.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034124hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gcca_ d.10.1.2 (A:) GCC-box 25.3 19 0.0014 20.3 2.0 27 63-89 29-55 (63)
2 d1kopa_ b.74.1.1 (A:) Carbonic 11.0 60 0.0044 21.4 2.1 26 18-43 197-222 (223)
3 d1mlwa_ d.178.1.1 (A:) Tryptop 9.6 1.2E+02 0.0088 21.7 3.5 21 62-82 28-48 (290)
4 d2i8da1 d.198.4.1 (A:2-122) Un 9.6 87 0.0063 18.9 2.3 27 6-32 6-32 (121)
5 d1gxha_ a.28.2.1 (A:) ImmE8 (I 8.4 2.1E+02 0.015 16.8 3.8 44 43-93 42-85 (85)
6 d1j8ua_ d.178.1.1 (A:) Phenyla 7.9 1.5E+02 0.011 21.4 3.4 20 62-81 27-46 (307)
7 d2dw4a3 d.16.1.5 (A:655-763) L 7.9 1.8E+02 0.013 15.6 3.3 29 5-33 59-87 (109)
8 d1toha_ d.178.1.1 (A:) Tyrosin 7.5 1.6E+02 0.012 21.5 3.4 20 62-81 28-47 (336)
9 d1eija_ a.5.6.1 (A:) Hypotheti 6.6 1E+02 0.0076 17.6 1.6 20 4-23 10-29 (72)
10 d1wl8a1 c.23.16.1 (A:1-188) GM 6.3 86 0.0063 19.3 1.1 21 25-45 159-181 (188)
No 1
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.32 E-value=19 Score=20.32 Aligned_cols=27 Identities=7% Similarity=-0.066 Sum_probs=24.1
Q ss_pred cCCCCCChHHHHHHHHHHHHHhcCCCC
Q 034124 63 DDPLVMARQQQERLSKLEMLKRRGKGP 89 (103)
Q Consensus 63 ~~g~~~De~e~~R~~~~~~rk~RGKg~ 89 (103)
++|.|..|+|.-|-=+....+.||..+
T Consensus 29 ~LGtf~t~eeAArAYD~aa~~~~G~~a 55 (63)
T d1gcca_ 29 WLGTFETAEDAALAYDRAAFRMRGSRA 55 (63)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHSSCC
T ss_pred ccccccCHHHHHHHHHHHHHHhcCCCc
Confidence 578899999999999999999999765
No 2
>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae [TaxId: 485]}
Probab=11.01 E-value=60 Score=21.42 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=19.2
Q ss_pred HHHHHHHhhhcccCCCCCCCchhHHh
Q 034124 18 GLTEARAKIFGHVLNPAGQRSPHKIL 43 (103)
Q Consensus 18 ~l~~ls~rIFg~~~nPt~~Rsg~kvl 43 (103)
+|+.++.-++...++|+..-+++.||
T Consensus 197 Ql~~~~~~~~~~N~Rp~Q~ln~R~V~ 222 (223)
T d1kopa_ 197 QAEKFTRAVGSENNRPVQPLNARVVI 222 (223)
T ss_dssp HHHHHHHHHSSCCCCCCCCCTTCCCB
T ss_pred HHHHHHHhccCCCCCCCCCCCCCEec
Confidence 35555555677889999988888775
No 3
>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.61 E-value=1.2e+02 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=12.8
Q ss_pred ccCCCCCChHHHHHHHHHHHH
Q 034124 62 KDDPLVMARQQQERLSKLEML 82 (103)
Q Consensus 62 r~~g~~~De~e~~R~~~~~~r 82 (103)
..+|+|.|+.=..|.++....
T Consensus 28 ~dhpgf~d~~yr~rR~~~a~~ 48 (290)
T d1mlwa_ 28 ADHPGFKDNVYRKRRKYFADL 48 (290)
T ss_dssp TTSTTTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHHH
Confidence 456778888655555554443
No 4
>d2i8da1 d.198.4.1 (A:2-122) Uncharacterized protein LSEI2283 {Lactobacillus casei [TaxId: 1582]}
Probab=9.57 E-value=87 Score=18.87 Aligned_cols=27 Identities=11% Similarity=-0.024 Sum_probs=21.6
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhcccCC
Q 034124 6 RLKNILATVVTTGLTEARAKIFGHVLN 32 (103)
Q Consensus 6 ~~~~~~s~~r~~~l~~ls~rIFg~~~n 32 (103)
-+..||.+++...|..|++-|=.+..+
T Consensus 6 y~~~~p~P~~r~~l~~Lr~~I~~~~P~ 32 (121)
T d2i8da1 6 WYQRIPTPDDLTRVESLFANMQAQFPQ 32 (121)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 467889999888899999988776544
No 5
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=8.39 E-value=2.1e+02 Score=16.81 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=29.9
Q ss_pred hhhccccccccccCCCCCCccCCCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 034124 43 LRKKLIGDKVAGWYPYDIKKDDPLVMARQQQERLSKLEMLKRRGKGPPKKG 93 (103)
Q Consensus 43 lr~~lkG~~v~~YYP~~~~r~~g~~~De~e~~R~~~~~~rk~RGKg~PKKg 93 (103)
+.+.|.|..|. |||..-. .|.-|---.+-.+.|..-||.--|+|
T Consensus 42 iteHP~gsDLI-fYP~~~~------edsPegIv~~IKeWRa~nG~PgFK~g 85 (85)
T d1gxha_ 42 VTEHPSGSDLI-YYPEGNN------DGSPEAVIKEIKEWRAANGKSGFKQG 85 (85)
T ss_dssp TTCCTTTTHHH-HSCCSSC------SSCTHHHHHHHHHHHHHTTCCCSCCC
T ss_pred hcCCCCCCcee-eeCCCCC------CCCHHHHHHHHHHHHHHcCCccccCC
Confidence 67777776665 7887421 24455555667788888998877765
No 6
>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.89 E-value=1.5e+02 Score=21.37 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=12.0
Q ss_pred ccCCCCCChHHHHHHHHHHH
Q 034124 62 KDDPLVMARQQQERLSKLEM 81 (103)
Q Consensus 62 r~~g~~~De~e~~R~~~~~~ 81 (103)
..+|+|.|..=..|.++...
T Consensus 27 ~dhpgf~d~~yr~rR~~~a~ 46 (307)
T d1j8ua_ 27 ADHPGFKDPVYRARRKQFAD 46 (307)
T ss_dssp TTSTTTTCHHHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHH
Confidence 45677888765555554443
No 7
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.87 E-value=1.8e+02 Score=15.57 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhcccCCC
Q 034124 5 GRLKNILATVVTTGLTEARAKIFGHVLNP 33 (103)
Q Consensus 5 ~~~~~~~s~~r~~~l~~ls~rIFg~~~nP 33 (103)
..|-+|...++...+...=.+||+....|
T Consensus 59 ~~~~~l~~~~~~~~~l~~L~~~~~~~~~~ 87 (109)
T d2dw4a3 59 GIMENISDDVIVGRCLAILKGIFGSSAVP 87 (109)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHCTTTCC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhCccccC
Confidence 34667888888888888778999975544
No 8
>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.45 E-value=1.6e+02 Score=21.51 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=12.2
Q ss_pred ccCCCCCChHHHHHHHHHHH
Q 034124 62 KDDPLVMARQQQERLSKLEM 81 (103)
Q Consensus 62 r~~g~~~De~e~~R~~~~~~ 81 (103)
..+|+|.|+.=-.|..++..
T Consensus 28 ~dhpgf~D~~Yr~RR~~~a~ 47 (336)
T d1toha_ 28 LDHPGFSDQVYRQRRKLIAE 47 (336)
T ss_dssp TTSTTTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 45677888865555554443
No 9
>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.61 E-value=1e+02 Score=17.63 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=15.9
Q ss_pred chhhhhhhhHHHHHHHHHHH
Q 034124 4 GGRLKNILATVVTTGLTEAR 23 (103)
Q Consensus 4 ~~~~~~~~s~~r~~~l~~ls 23 (103)
..+|+.++|++-..+|++++
T Consensus 10 ~~iL~qiLt~eAreRL~~i~ 29 (72)
T d1eija_ 10 KQIMMQILTPEARSRLANLR 29 (72)
T ss_dssp HHHHTTTCCHHHHHHHHHHT
T ss_pred HHHHHHHcCHHHHHHHHhhh
Confidence 36889999998888887764
No 10
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.29 E-value=86 Score=19.30 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.1
Q ss_pred hhhcccCCCCCC--CchhHHhhh
Q 034124 25 KIFGHVLNPAGQ--RSPHKILRK 45 (103)
Q Consensus 25 rIFg~~~nPt~~--Rsg~kvlr~ 45 (103)
.|||..|-|+-+ ..|.++|+.
T Consensus 159 ~i~gvQFHPE~s~t~~G~~il~n 181 (188)
T d1wl8a1 159 PIYGVQFHPEVAHTEKGEEILRN 181 (188)
T ss_dssp CEEEESSCTTSTTSTTHHHHHHH
T ss_pred CEEEEEcCCccCCCccHHHHHHH
Confidence 589999999954 567788764
Done!