Query 034125
Match_columns 103
No_of_seqs 167 out of 1515
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 17:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ect_A Ring finger protein 126 99.7 1.9E-17 6.3E-22 93.5 5.0 64 11-79 5-68 (78)
2 2ep4_A Ring finger protein 24; 99.7 7.2E-17 2.5E-21 90.2 6.6 58 13-75 7-64 (74)
3 2kiz_A E3 ubiquitin-protein li 99.7 3E-16 1E-20 86.6 6.3 56 16-76 9-64 (69)
4 2ea6_A Ring finger protein 4; 99.6 2.9E-16 1E-20 86.3 5.0 59 12-75 6-68 (69)
5 1x4j_A Ring finger protein 38; 99.6 2.6E-16 9E-21 88.2 4.7 54 18-76 20-73 (75)
6 2ct2_A Tripartite motif protei 99.6 1.9E-15 6.6E-20 86.7 7.6 68 12-81 6-74 (88)
7 2l0b_A E3 ubiquitin-protein li 99.6 5.3E-16 1.8E-20 90.1 4.9 53 18-75 37-89 (91)
8 1iym_A EL5; ring-H2 finger, ub 99.6 4E-16 1.4E-20 82.5 3.0 51 19-74 3-54 (55)
9 2djb_A Polycomb group ring fin 99.6 1.7E-15 5.9E-20 84.3 5.1 63 9-78 3-65 (72)
10 3ng2_A RNF4, snurf, ring finge 99.6 1E-15 3.6E-20 84.7 3.4 57 17-78 6-66 (71)
11 2ecl_A Ring-box protein 2; RNF 99.6 5.5E-15 1.9E-19 84.2 5.5 53 18-75 12-76 (81)
12 2ecm_A Ring finger and CHY zin 99.6 4.2E-15 1.4E-19 78.4 4.7 51 19-74 3-54 (55)
13 2d8t_A Dactylidin, ring finger 99.5 3E-15 1E-19 83.1 3.7 54 14-75 8-61 (71)
14 2yur_A Retinoblastoma-binding 99.5 9.8E-15 3.3E-19 81.7 5.6 61 10-76 4-65 (74)
15 2csy_A Zinc finger protein 183 99.5 1.3E-14 4.5E-19 82.3 5.7 55 12-74 6-60 (81)
16 2ysl_A Tripartite motif-contai 99.5 2.6E-14 8.8E-19 79.4 6.0 57 16-77 15-71 (73)
17 2ecy_A TNF receptor-associated 99.5 1.8E-14 6.3E-19 78.8 5.1 58 13-77 7-64 (66)
18 2xeu_A Ring finger protein 4; 99.5 6E-15 2E-19 79.9 2.7 54 20-78 2-59 (64)
19 2d8s_A Cellular modulator of i 99.5 3.9E-14 1.3E-18 80.5 6.0 60 12-75 6-70 (80)
20 1v87_A Deltex protein 2; ring- 99.5 2.4E-14 8.1E-19 86.0 4.9 56 20-76 24-95 (114)
21 2ecn_A Ring finger protein 141 99.5 2.4E-15 8.3E-20 83.1 0.2 53 16-77 10-62 (70)
22 2ecw_A Tripartite motif-contai 99.5 7E-14 2.4E-18 79.4 6.3 59 16-78 14-74 (85)
23 2ecv_A Tripartite motif-contai 99.5 1.2E-13 4.1E-18 78.5 5.7 58 17-78 15-74 (85)
24 3dpl_R Ring-box protein 1; ubi 99.4 8.6E-14 3E-18 83.0 4.3 50 20-74 36-100 (106)
25 1chc_A Equine herpes virus-1 r 99.4 7.4E-14 2.5E-18 76.6 3.2 49 19-74 3-51 (68)
26 2ct0_A Non-SMC element 1 homol 99.4 3.2E-13 1.1E-17 75.6 5.7 64 7-75 1-64 (74)
27 2ysj_A Tripartite motif-contai 99.4 4.4E-13 1.5E-17 72.5 6.2 49 16-69 15-63 (63)
28 3ztg_A E3 ubiquitin-protein li 99.4 3.2E-13 1.1E-17 78.1 6.0 52 16-73 8-60 (92)
29 2egp_A Tripartite motif-contai 99.4 6.7E-14 2.3E-18 78.8 1.8 58 16-77 7-67 (79)
30 1g25_A CDK-activating kinase a 99.4 4.9E-13 1.7E-17 72.8 4.9 56 20-78 2-58 (65)
31 4ayc_A E3 ubiquitin-protein li 99.4 1.2E-13 4.2E-18 85.6 2.4 49 20-76 52-100 (138)
32 2ecj_A Tripartite motif-contai 99.4 4.1E-13 1.4E-17 71.3 4.0 53 12-69 6-58 (58)
33 1t1h_A Gspef-atpub14, armadill 99.4 4.1E-13 1.4E-17 75.5 4.2 53 18-77 5-57 (78)
34 1e4u_A Transcriptional repress 99.4 7.4E-13 2.5E-17 74.9 4.8 57 18-78 8-65 (78)
35 4ap4_A E3 ubiquitin ligase RNF 99.3 3.2E-13 1.1E-17 82.4 2.7 55 19-78 5-63 (133)
36 3lrq_A E3 ubiquitin-protein li 99.3 3.2E-13 1.1E-17 79.5 1.9 53 19-77 20-72 (100)
37 3l11_A E3 ubiquitin-protein li 99.3 1.2E-13 4.2E-18 83.0 0.1 56 12-74 6-61 (115)
38 4a0k_B E3 ubiquitin-protein li 99.3 2.1E-13 7.1E-18 82.6 0.5 50 20-74 47-111 (117)
39 2kre_A Ubiquitin conjugation f 99.3 2.6E-12 9E-17 75.8 4.9 54 18-79 26-79 (100)
40 2y43_A E3 ubiquitin-protein li 99.3 7.9E-13 2.7E-17 77.5 2.5 51 19-76 20-70 (99)
41 2ckl_B Ubiquitin ligase protei 99.3 1.4E-12 4.9E-17 82.8 3.6 51 19-75 52-102 (165)
42 2ckl_A Polycomb group ring fin 99.3 1.5E-12 5.3E-17 77.4 3.5 51 19-76 13-63 (108)
43 3fl2_A E3 ubiquitin-protein li 99.3 1.6E-12 5.5E-17 79.1 2.8 50 19-75 50-99 (124)
44 1wgm_A Ubiquitin conjugation f 99.3 4.7E-12 1.6E-16 74.4 4.6 53 19-79 20-73 (98)
45 1jm7_A BRCA1, breast cancer ty 99.3 2.4E-12 8.2E-17 76.7 3.3 54 20-78 20-73 (112)
46 3hct_A TNF receptor-associated 99.3 4.5E-12 1.5E-16 76.6 4.0 54 16-76 13-66 (118)
47 4ap4_A E3 ubiquitin ligase RNF 99.2 5.1E-12 1.8E-16 77.0 3.1 56 17-77 68-127 (133)
48 2ea5_A Cell growth regulator w 99.2 2.3E-11 8E-16 66.9 5.2 56 8-75 2-58 (68)
49 2kr4_A Ubiquitin conjugation f 99.2 1.2E-11 4.2E-16 70.8 4.0 51 18-76 11-61 (85)
50 1z6u_A NP95-like ring finger p 99.2 7.2E-12 2.5E-16 78.7 3.0 50 20-76 77-126 (150)
51 2vje_A E3 ubiquitin-protein li 99.2 1.4E-11 4.7E-16 67.1 3.6 48 19-74 6-56 (64)
52 1rmd_A RAG1; V(D)J recombinati 99.2 6.4E-12 2.2E-16 75.5 2.2 51 19-76 21-71 (116)
53 2vje_B MDM4 protein; proto-onc 99.2 1.2E-11 4.2E-16 67.0 3.0 51 18-74 4-55 (63)
54 2y1n_A E3 ubiquitin-protein li 99.1 1.1E-10 3.7E-15 83.0 4.8 48 21-75 332-379 (389)
55 1bor_A Transcription factor PM 99.1 2.2E-11 7.4E-16 64.5 0.9 47 19-76 4-50 (56)
56 3hcs_A TNF receptor-associated 99.1 7.4E-11 2.5E-15 75.2 3.3 54 16-76 13-66 (170)
57 2yu4_A E3 SUMO-protein ligase 99.1 7.8E-11 2.7E-15 68.6 3.1 54 19-76 5-64 (94)
58 2c2l_A CHIP, carboxy terminus 99.0 1.5E-10 5.3E-15 78.2 3.7 55 16-77 203-257 (281)
59 4ic3_A E3 ubiquitin-protein li 99.0 6.9E-11 2.4E-15 65.9 1.5 44 19-74 22-66 (74)
60 3knv_A TNF receptor-associated 99.0 2.6E-11 8.9E-16 75.5 -0.3 49 19-74 29-77 (141)
61 1jm7_B BARD1, BRCA1-associated 99.0 3.4E-11 1.2E-15 72.5 -0.2 49 19-77 20-69 (117)
62 1wim_A KIAA0161 protein; ring 99.0 9.4E-11 3.2E-15 68.1 1.6 53 19-72 3-61 (94)
63 2ecg_A Baculoviral IAP repeat- 99.0 3.2E-10 1.1E-14 63.3 3.0 44 20-75 24-68 (75)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.9 7.6E-10 2.6E-14 59.4 3.9 52 18-75 3-59 (60)
65 2f42_A STIP1 homology and U-bo 98.8 1.3E-09 4.4E-14 70.3 3.1 54 18-78 103-156 (179)
66 3k1l_B Fancl; UBC, ring, RWD, 98.8 8.5E-10 2.9E-14 77.2 1.6 57 19-76 306-374 (381)
67 3htk_C E3 SUMO-protein ligase 98.8 1.2E-09 3.9E-14 74.0 2.2 58 17-79 177-236 (267)
68 2yho_A E3 ubiquitin-protein li 98.8 1.1E-09 3.9E-14 61.7 1.6 45 19-75 16-61 (79)
69 3t6p_A Baculoviral IAP repeat- 98.6 8.4E-09 2.9E-13 72.5 0.9 43 20-74 294-337 (345)
70 2bay_A PRE-mRNA splicing facto 98.4 2.5E-07 8.6E-12 49.6 2.9 52 21-79 3-54 (61)
71 3vk6_A E3 ubiquitin-protein li 98.3 5.2E-07 1.8E-11 52.6 3.6 46 23-74 3-48 (101)
72 3nw0_A Non-structural maintena 98.1 2.4E-06 8.1E-11 57.3 4.5 53 19-76 178-230 (238)
73 2lri_C Autoimmune regulator; Z 97.7 4.3E-05 1.5E-09 41.4 3.8 52 18-73 9-60 (66)
74 1wil_A KIAA1045 protein; ring 97.5 0.00013 4.3E-09 41.2 4.1 57 13-71 7-75 (89)
75 2jun_A Midline-1; B-BOX, TRIM, 97.1 0.00039 1.3E-08 40.1 3.1 35 20-55 2-36 (101)
76 1fp0_A KAP-1 corepressor; PHD 97.0 0.00037 1.3E-08 39.7 2.1 55 14-72 18-72 (88)
77 2ko5_A Ring finger protein Z; 96.7 0.00034 1.2E-08 40.2 0.5 47 20-76 27-74 (99)
78 1mm2_A MI2-beta; PHD, zinc fin 96.6 0.00038 1.3E-08 37.0 0.2 53 17-73 5-57 (61)
79 2l5u_A Chromodomain-helicase-D 96.4 0.00083 2.8E-08 35.6 1.0 50 18-71 8-57 (61)
80 1f62_A Transcription factor WS 96.4 0.0013 4.4E-08 33.4 1.6 48 23-71 2-49 (51)
81 2k16_A Transcription initiatio 96.1 0.0016 5.5E-08 35.7 1.1 55 18-73 15-69 (75)
82 2cs3_A Protein C14ORF4, MY039 96.1 0.027 9.1E-07 31.4 5.9 43 16-59 10-53 (93)
83 3o36_A Transcription intermedi 95.9 0.0012 4.1E-08 42.2 -0.1 51 19-73 2-52 (184)
84 2yql_A PHD finger protein 21A; 95.7 0.00033 1.1E-08 36.5 -2.9 49 18-70 6-54 (56)
85 3u5n_A E3 ubiquitin-protein li 95.7 0.0013 4.4E-08 42.9 -0.8 52 18-73 4-55 (207)
86 2lbm_A Transcriptional regulat 95.3 0.027 9.1E-07 34.8 4.3 50 18-71 60-116 (142)
87 2ysm_A Myeloid/lymphoid or mix 95.2 0.0042 1.4E-07 36.5 0.5 52 18-70 4-55 (111)
88 1xwh_A Autoimmune regulator; P 95.0 0.0013 4.3E-08 35.4 -2.1 50 18-71 5-54 (66)
89 1wen_A Inhibitor of growth fam 95.0 0.022 7.5E-07 31.0 2.9 50 19-73 14-66 (71)
90 2l43_A N-teminal domain from h 94.9 0.0035 1.2E-07 35.6 -0.4 60 14-76 18-79 (88)
91 2e6r_A Jumonji/ARID domain-con 94.8 0.0013 4.5E-08 37.7 -2.4 52 19-71 14-65 (92)
92 2puy_A PHD finger protein 21A; 94.8 0.0015 5E-08 34.4 -2.1 49 19-71 3-51 (60)
93 1wep_A PHF8; structural genomi 94.7 0.048 1.6E-06 30.0 3.9 57 15-73 6-64 (79)
94 2ro1_A Transcription intermedi 94.6 0.0043 1.5E-07 40.0 -0.7 49 21-73 2-50 (189)
95 1weu_A Inhibitor of growth fam 94.6 0.026 9E-07 32.2 2.7 49 20-73 35-86 (91)
96 3ql9_A Transcriptional regulat 94.5 0.072 2.5E-06 32.3 4.7 50 18-71 54-110 (129)
97 1wev_A Riken cDNA 1110020M19; 94.3 0.0015 5.2E-08 37.1 -2.9 53 19-72 14-72 (88)
98 2lv9_A Histone-lysine N-methyl 93.5 0.012 4.2E-07 33.9 -0.2 50 19-71 26-75 (98)
99 2e6s_A E3 ubiquitin-protein li 93.4 0.0093 3.2E-07 33.0 -0.7 48 23-71 28-76 (77)
100 3v43_A Histone acetyltransfera 93.4 0.014 4.7E-07 34.4 -0.1 49 23-71 63-111 (112)
101 1wew_A DNA-binding family prot 93.3 0.019 6.5E-07 31.7 0.5 53 19-73 14-73 (78)
102 3asl_A E3 ubiquitin-protein li 93.2 0.0086 2.9E-07 32.5 -1.0 48 23-71 20-68 (70)
103 1wee_A PHD finger family prote 93.1 0.0062 2.1E-07 33.1 -1.8 55 15-71 10-65 (72)
104 2yt5_A Metal-response element- 92.9 0.0035 1.2E-07 33.4 -2.9 54 18-72 3-61 (66)
105 3shb_A E3 ubiquitin-protein li 92.4 0.0085 2.9E-07 33.2 -1.8 48 23-71 28-76 (77)
106 3v43_A Histone acetyltransfera 91.7 0.27 9.1E-06 28.8 4.0 51 20-70 4-62 (112)
107 3o70_A PHD finger protein 13; 91.5 0.012 4E-07 31.8 -1.9 55 14-71 12-66 (68)
108 4gne_A Histone-lysine N-methyl 90.7 0.06 2.1E-06 31.6 0.5 50 18-73 12-63 (107)
109 2vpb_A Hpygo1, pygopus homolog 90.7 0.18 6.2E-06 26.8 2.4 36 18-54 5-42 (65)
110 3ask_A E3 ubiquitin-protein li 90.5 0.024 8.3E-07 37.5 -1.5 48 23-71 176-224 (226)
111 1wem_A Death associated transc 90.1 0.49 1.7E-05 25.6 3.9 53 18-72 13-70 (76)
112 1we9_A PHD finger family prote 89.8 0.14 4.9E-06 26.8 1.5 54 18-72 3-58 (64)
113 3lqh_A Histone-lysine N-methyl 89.7 0.12 4.2E-06 33.1 1.4 53 21-74 2-65 (183)
114 1x62_A C-terminal LIM domain p 89.4 0.45 1.5E-05 25.6 3.4 40 18-73 12-51 (79)
115 3c6w_A P28ING5, inhibitor of g 88.9 0.021 7.3E-07 29.9 -2.2 48 19-71 7-57 (59)
116 1weo_A Cellulose synthase, cat 88.7 2 6.9E-05 24.3 5.7 52 19-74 14-69 (93)
117 2dj7_A Actin-binding LIM prote 88.5 0.56 1.9E-05 25.5 3.4 42 18-74 12-53 (80)
118 2vnf_A ING 4, P29ING4, inhibit 88.3 0.023 7.9E-07 29.8 -2.3 48 19-71 8-58 (60)
119 2kgg_A Histone demethylase jar 88.1 0.056 1.9E-06 27.4 -0.9 47 23-70 4-52 (52)
120 2ysm_A Myeloid/lymphoid or mix 87.9 0.029 1E-06 32.8 -2.3 49 23-72 56-104 (111)
121 2d8y_A Eplin protein; LIM doma 86.6 1.4 4.9E-05 24.2 4.5 42 19-75 13-54 (91)
122 2co8_A NEDD9 interacting prote 86.6 1.1 3.9E-05 24.2 4.0 44 19-77 13-56 (82)
123 2a20_A Regulating synaptic mem 86.1 0.41 1.4E-05 25.0 1.8 36 17-52 5-40 (62)
124 2g6q_A Inhibitor of growth pro 85.7 0.042 1.4E-06 29.0 -2.3 48 19-71 9-59 (62)
125 2d8v_A Zinc finger FYVE domain 85.4 0.65 2.2E-05 24.8 2.4 36 16-56 3-39 (67)
126 3i2d_A E3 SUMO-protein ligase 84.2 1.2 4.1E-05 31.6 3.9 54 21-79 249-304 (371)
127 2ku3_A Bromodomain-containing 83.9 1.1 3.8E-05 24.0 3.0 50 18-70 13-64 (71)
128 2jmi_A Protein YNG1, ING1 homo 83.7 0.1 3.4E-06 29.7 -1.4 47 19-70 24-74 (90)
129 2kwj_A Zinc finger protein DPF 83.5 0.043 1.5E-06 32.4 -3.1 47 23-70 60-106 (114)
130 4fo9_A E3 SUMO-protein ligase 83.4 1.3 4.4E-05 31.3 3.8 54 21-79 215-270 (360)
131 2ri7_A Nucleosome-remodeling f 83.3 0.16 5.5E-06 31.8 -0.7 51 19-71 6-58 (174)
132 1z2q_A LM5-1; membrane protein 82.0 1.9 6.5E-05 23.7 3.5 35 19-54 19-54 (84)
133 1zbd_B Rabphilin-3A; G protein 81.8 0.53 1.8E-05 28.6 1.2 52 19-70 53-105 (134)
134 1wfk_A Zinc finger, FYVE domai 81.1 0.96 3.3E-05 25.3 2.1 36 18-54 6-42 (88)
135 3t7l_A Zinc finger FYVE domain 80.9 1.5 5.1E-05 24.6 2.9 35 19-54 18-53 (90)
136 1z60_A TFIIH basal transcripti 80.7 0.5 1.7E-05 24.6 0.7 42 23-69 17-58 (59)
137 3a1b_A DNA (cytosine-5)-methyl 80.2 2 6.7E-05 26.9 3.4 49 18-70 76-132 (159)
138 2zet_C Melanophilin; complex, 79.2 1.2 4.2E-05 27.6 2.3 49 19-70 66-115 (153)
139 1x4i_A Inhibitor of growth pro 79.1 0.47 1.6E-05 25.5 0.3 48 19-71 4-54 (70)
140 2yw8_A RUN and FYVE domain-con 78.5 1.2 4.1E-05 24.4 1.9 35 19-54 17-52 (82)
141 2cor_A Pinch protein; LIM doma 78.4 3.4 0.00012 22.1 3.8 48 13-76 7-54 (79)
142 3mjh_B Early endosome antigen 78.3 0.64 2.2E-05 21.5 0.6 15 19-34 3-17 (34)
143 1joc_A EEA1, early endosomal a 78.0 1 3.5E-05 26.8 1.6 33 20-53 68-101 (125)
144 3m62_A Ubiquitin conjugation f 77.9 1.1 3.7E-05 35.5 2.1 51 18-76 888-939 (968)
145 1x4u_A Zinc finger, FYVE domai 76.8 1.2 4.3E-05 24.5 1.7 34 19-53 12-46 (84)
146 2xb1_A Pygopus homolog 2, B-ce 73.0 1.4 4.7E-05 25.5 1.2 52 21-73 3-62 (105)
147 2pv0_B DNA (cytosine-5)-methyl 72.7 3.3 0.00011 29.5 3.3 50 18-71 90-147 (386)
148 1vfy_A Phosphatidylinositol-3- 72.5 2 7E-05 22.9 1.8 31 22-53 12-43 (73)
149 2cu8_A Cysteine-rich protein 2 70.2 4.5 0.00015 21.2 2.9 42 20-76 8-49 (76)
150 2o35_A Hypothetical protein DU 68.9 2.1 7.3E-05 24.6 1.4 14 46-59 42-55 (105)
151 3fyb_A Protein of unknown func 68.8 2.2 7.4E-05 24.6 1.4 14 46-59 41-54 (104)
152 1dvp_A HRS, hepatocyte growth 68.6 1.9 6.3E-05 28.0 1.2 33 20-53 160-193 (220)
153 2ffw_A Midline-1; B-BOX, ring 67.6 12 0.00042 20.0 4.8 35 19-54 28-62 (78)
154 1wg2_A Zinc finger (AN1-like) 67.2 8.1 0.00028 20.3 3.3 32 15-49 9-40 (64)
155 3zyq_A Hepatocyte growth facto 67.2 3.8 0.00013 26.7 2.6 34 20-54 163-197 (226)
156 1g47_A Pinch protein; LIM doma 66.8 5.7 0.0002 20.7 2.9 42 19-75 9-51 (77)
157 1x64_A Alpha-actinin-2 associa 66.3 13 0.00046 20.0 5.5 42 19-76 23-64 (89)
158 3o7a_A PHD finger protein 13 v 65.7 0.28 9.5E-06 24.7 -2.5 44 26-71 8-51 (52)
159 1wfh_A Zinc finger (AN1-like) 65.3 9.9 0.00034 20.0 3.4 32 15-49 9-40 (64)
160 1y02_A CARP2, FYVE-ring finger 64.3 2.1 7E-05 25.5 0.7 46 19-69 17-63 (120)
161 2l4z_A DNA endonuclease RBBP8, 64.1 6.7 0.00023 22.9 3.0 40 20-74 60-99 (123)
162 1iml_A CRIP, cysteine rich int 59.0 4.8 0.00016 21.1 1.6 11 64-74 28-38 (76)
163 3mpx_A FYVE, rhogef and PH dom 56.8 2.3 7.8E-05 30.0 0.0 52 20-72 374-429 (434)
164 2jvx_A NF-kappa-B essential mo 56.8 2.2 7.5E-05 18.7 -0.1 12 64-75 4-15 (28)
165 1wyh_A SLIM 2, skeletal muscle 55.7 9.1 0.00031 19.6 2.3 41 21-76 5-46 (72)
166 1x61_A Thyroid receptor intera 55.6 11 0.00037 19.3 2.7 39 21-74 5-44 (72)
167 2gmg_A Hypothetical protein PF 53.6 6 0.00021 22.9 1.4 25 40-73 70-94 (105)
168 1nyp_A Pinch protein; LIM doma 52.3 7.9 0.00027 19.5 1.7 39 21-75 5-43 (66)
169 2dar_A PDZ and LIM domain prot 52.1 10 0.00036 20.5 2.3 41 20-76 24-64 (90)
170 1zfo_A LAsp-1; LIM domain, zin 51.5 2.6 8.9E-05 18.6 -0.3 28 22-52 4-31 (31)
171 1x4k_A Skeletal muscle LIM-pro 50.5 11 0.00037 19.3 2.1 41 21-76 5-46 (72)
172 1x4l_A Skeletal muscle LIM-pro 49.5 22 0.00074 18.1 3.2 39 21-74 5-46 (72)
173 2d8x_A Protein pinch; LIM doma 47.9 12 0.0004 19.1 2.0 40 21-76 5-44 (70)
174 2d8z_A Four and A half LIM dom 47.7 16 0.00055 18.5 2.5 39 21-75 5-43 (70)
175 3c5k_A HD6, histone deacetylas 47.7 10 0.00035 21.9 1.8 24 21-48 24-47 (109)
176 2rsd_A E3 SUMO-protein ligase 46.8 7.6 0.00026 20.3 1.1 50 19-70 8-63 (68)
177 2cur_A Skeletal muscle LIM-pro 46.8 17 0.00057 18.4 2.5 38 21-74 5-42 (69)
178 1v6g_A Actin binding LIM prote 46.2 14 0.0005 19.4 2.2 38 22-75 16-53 (81)
179 1x6a_A LIMK-2, LIM domain kina 46.1 28 0.00094 18.2 3.4 38 21-74 15-52 (81)
180 1wig_A KIAA1808 protein; LIM d 44.6 16 0.00054 19.0 2.2 37 22-74 6-42 (73)
181 1x68_A FHL5 protein; four-and- 41.8 16 0.00056 18.9 2.0 40 21-75 5-47 (76)
182 1a7i_A QCRP2 (LIM1); LIM domai 41.2 5.1 0.00018 21.3 -0.2 41 21-76 7-47 (81)
183 2cup_A Skeletal muscle LIM-pro 40.8 27 0.00092 19.0 2.9 45 21-74 33-77 (101)
184 2jmo_A Parkin; IBR, E3 ligase, 40.2 1.1 3.7E-05 24.5 -3.1 15 42-56 55-69 (80)
185 3kqi_A GRC5, PHD finger protei 39.9 25 0.00085 18.6 2.5 48 23-71 11-60 (75)
186 2cuq_A Four and A half LIM dom 39.6 27 0.00092 18.1 2.7 39 21-75 15-53 (80)
187 2g45_A Ubiquitin carboxyl-term 39.2 27 0.00091 20.8 2.8 25 20-48 33-57 (129)
188 1x63_A Skeletal muscle LIM-pro 38.9 42 0.0014 17.4 4.7 42 21-76 15-56 (82)
189 2dlo_A Thyroid receptor-intera 37.9 21 0.00072 18.7 2.0 41 20-76 14-54 (81)
190 2l3k_A Rhombotin-2, linker, LI 37.8 17 0.00057 21.0 1.7 39 19-59 34-72 (123)
191 1m3v_A FLIN4, fusion of the LI 37.1 28 0.00096 20.0 2.6 51 21-77 32-83 (122)
192 2lq6_A Bromodomain-containing 36.3 47 0.0016 18.2 3.4 34 19-54 15-50 (87)
193 2ehe_A Four and A half LIM dom 36.2 28 0.00096 18.2 2.4 40 21-75 15-55 (82)
194 2jtn_A LIM domain-binding prot 35.9 35 0.0012 20.9 3.1 11 64-74 120-130 (182)
195 1x3h_A Leupaxin; paxillin fami 33.6 26 0.00088 18.2 1.9 39 21-75 15-53 (80)
196 1x4w_A Hypothetical protein FL 32.1 24 0.0008 18.7 1.5 34 14-49 8-43 (67)
197 3f6q_B LIM and senescent cell 32.1 29 0.001 17.4 2.0 42 20-75 10-51 (72)
198 2uzg_A Ubiquitin carboxyl-term 31.1 28 0.00097 19.5 1.9 26 21-49 25-52 (97)
199 1j2o_A FLIN2, fusion of rhombo 30.8 27 0.00093 19.7 1.8 37 19-57 28-65 (114)
200 2ku7_A MLL1 PHD3-CYP33 RRM chi 30.6 48 0.0017 18.8 3.0 31 42-72 7-44 (140)
201 2cot_A Zinc finger protein 435 30.2 46 0.0016 16.6 2.6 23 7-29 4-26 (77)
202 2egq_A FHL1 protein; LIM domai 30.0 31 0.001 17.7 1.9 40 21-75 15-58 (77)
203 1e8j_A Rubredoxin; iron-sulfur 30.0 40 0.0014 16.7 2.2 12 18-29 33-44 (52)
204 3vth_A Hydrogenase maturation 29.6 47 0.0016 25.7 3.4 58 15-73 105-193 (761)
205 2ct7_A Ring finger protein 31; 29.4 2.6 8.9E-05 23.2 -2.7 18 38-55 44-61 (86)
206 2fiy_A Protein FDHE homolog; F 28.5 1.4 4.8E-05 30.4 -4.7 48 19-72 180-231 (309)
207 2pk7_A Uncharacterized protein 28.5 13 0.00044 19.7 0.1 11 64-74 9-19 (69)
208 1tvs_A Transactivator protein; 27.7 42 0.0015 18.0 2.1 28 2-29 15-42 (75)
209 2kn9_A Rubredoxin; metalloprot 27.4 45 0.0015 18.3 2.2 12 18-29 57-68 (81)
210 1wfp_A Zinc finger (AN1-like) 27.3 79 0.0027 17.0 3.7 28 19-49 23-50 (74)
211 2rgt_A Fusion of LIM/homeobox 27.3 46 0.0016 20.1 2.6 48 19-76 31-78 (169)
212 2jne_A Hypothetical protein YF 27.1 1.9 6.4E-05 24.8 -3.5 40 21-73 32-71 (101)
213 2iyb_E Testin, TESS, TES; LIM 26.6 34 0.0012 17.1 1.6 40 22-76 3-45 (65)
214 3ttc_A HYPF, transcriptional r 26.5 49 0.0017 25.2 2.9 58 15-73 11-99 (657)
215 3vhs_A ATPase wrnip1; zinc fin 25.4 13 0.00045 15.8 -0.2 13 64-76 7-19 (29)
216 4g9i_A Hydrogenase maturation 25.4 67 0.0023 24.9 3.6 56 16-72 101-187 (772)
217 1wd2_A Ariadne-1 protein homol 24.7 56 0.0019 16.5 2.2 13 63-75 6-18 (60)
218 1l8d_A DNA double-strand break 24.4 18 0.0006 20.5 0.2 12 63-74 47-58 (112)
219 3kv5_D JMJC domain-containing 23.7 51 0.0017 24.1 2.5 45 25-70 40-86 (488)
220 2jny_A Uncharacterized BCR; st 23.6 30 0.001 18.2 1.0 11 64-74 11-21 (67)
221 2lv2_A Insulinoma-associated p 23.6 56 0.0019 17.5 2.2 14 62-75 55-68 (85)
222 4gut_A Lysine-specific histone 23.5 50 0.0017 25.5 2.6 37 21-58 13-56 (776)
223 2v3b_B Rubredoxin 2, rubredoxi 23.4 43 0.0015 16.8 1.5 12 18-29 33-44 (55)
224 2xqn_T Testin, TESS; metal-bin 22.8 47 0.0016 18.9 1.9 48 19-75 28-75 (126)
225 1b8t_A Protein (CRP1); LIM dom 22.7 42 0.0015 20.8 1.8 11 44-54 54-64 (192)
226 2hf1_A Tetraacyldisaccharide-1 22.7 32 0.0011 18.1 1.0 11 64-74 9-19 (68)
227 1gnf_A Transcription factor GA 22.6 77 0.0026 15.2 3.1 37 20-59 3-39 (46)
228 2jr6_A UPF0434 protein NMA0874 21.9 33 0.0011 18.0 0.9 11 64-74 9-19 (68)
229 4rxn_A Rubredoxin; electron tr 21.7 42 0.0014 16.8 1.3 13 17-29 32-44 (54)
230 2jyp_A Aragonite protein AP7; 21.6 31 0.0011 15.3 0.7 9 21-29 9-17 (36)
231 1yk4_A Rubredoxin, RD; electro 21.3 43 0.0015 16.6 1.3 13 17-29 31-43 (52)
232 2e5r_A Dystrobrevin alpha; ZZ 21.2 95 0.0033 15.8 4.5 32 22-54 12-44 (63)
233 1rut_X Flinc4, fusion protein 20.9 36 0.0012 21.1 1.2 20 43-74 89-108 (188)
234 1dx8_A Rubredoxin; electron tr 20.8 49 0.0017 17.5 1.5 12 18-29 37-48 (70)
235 2m0e_A Zinc finger and BTB dom 20.1 51 0.0017 12.2 2.2 14 64-77 3-16 (29)
No 1
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=1.9e-17 Score=93.54 Aligned_cols=64 Identities=31% Similarity=0.803 Sum_probs=50.9
Q ss_pred CCCCCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCChh
Q 034125 11 EGQRSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSFE 79 (103)
Q Consensus 11 ~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 79 (103)
++.......+...|+||++ .+.....+..++|+|.||..||..|+... .+||+||..+......
T Consensus 5 ~s~~~~~~~~~~~C~IC~~-~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 5 SSGTEEHVGSGLECPVCKE-DYALGESVRQLPCNHLFHDSCIVPWLEQH----DSCPVCRKSLTGQNTA 68 (78)
T ss_dssp CCCCCTTSSSSCCCTTTTS-CCCTTSCEEECTTSCEEETTTTHHHHTTT----CSCTTTCCCCCCSCSC
T ss_pred CCCCcccCCCCCCCeeCCc-cccCCCCEEEeCCCCeecHHHHHHHHHcC----CcCcCcCCccCCcccC
Confidence 3344444567889999999 76666666778999999999999999877 7999999998765544
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.2e-17 Score=90.25 Aligned_cols=58 Identities=29% Similarity=0.758 Sum_probs=47.7
Q ss_pred CCCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 13 QRSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 13 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
.......++..|+||++ .+.....+..++|+|.||..||..|+... .+||+||..+..
T Consensus 7 ~~~~~~~~~~~C~IC~~-~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 7 GKVKELNLHELCAVCLE-DFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQ 64 (74)
T ss_dssp SCCCCCCCSCBCSSSCC-BCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSS
T ss_pred cccccCCCCCCCcCCCc-ccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccccc
Confidence 33444566789999999 76666667777999999999999999987 799999998754
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=86.61 Aligned_cols=56 Identities=30% Similarity=0.821 Sum_probs=46.6
Q ss_pred CCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
....+...|+||++ .+..+..+..++|+|.||..||..|+... .+||+||..+...
T Consensus 9 ~~~~~~~~C~IC~~-~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLS-ILEEGEDVRRLPCMHLFHQVCVDQWLITN----KKCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTB-CCCSSSCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCc-cccCCCcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCccccCc
Confidence 34466788999999 66666667778999999999999999987 7899999988644
No 4
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-16 Score=86.34 Aligned_cols=59 Identities=22% Similarity=0.650 Sum_probs=45.9
Q ss_pred CCCCCCCCCccccccccccccCCC----CceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 12 GQRSNHTDEEAECAICLEKEYSDE----SAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 12 ~~~~~~~~~~~~C~IC~~~~~~~~----~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
........+...|+||++ .+... ..+..++|+|.||..||..|+... ..||+||..+..
T Consensus 6 ~~~~~~~~~~~~C~IC~~-~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 6 SGTGLRPSGTVSCPICMD-GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 68 (69)
T ss_dssp CCCCCCTTCCCCCTTTCC-CHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC----SSCTTTCCCCCC
T ss_pred CccccCCCCCCCCcccCc-cccccccccCCeEeCCCCChhcHHHHHHHHHcC----CCCCCCCCccCc
Confidence 333444577889999999 55432 334667899999999999999987 799999998754
No 5
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-16 Score=88.24 Aligned_cols=54 Identities=26% Similarity=0.794 Sum_probs=46.1
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
..+...|+||++ .+..+..+..++|+|.||..||..|+... .+||+||+.+...
T Consensus 20 ~~~~~~C~IC~~-~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~----~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMC-DFESRQLLRVLPCNHEFHAKCVDKWLKAN----RTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTE-ECCBTCEEEEETTTEEEETTHHHHHHHHC----SSCTTTCCCCCCC
T ss_pred cCCCCCCeECCc-ccCCCCeEEEECCCCHhHHHHHHHHHHcC----CcCcCcCCcCCCC
Confidence 356778999999 77666667778999999999999999987 7999999988654
No 6
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=86.72 Aligned_cols=68 Identities=24% Similarity=0.550 Sum_probs=50.1
Q ss_pred CCCCCCCCCccccccccccccCCCCc-eEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCChhhh
Q 034125 12 GQRSNHTDEEAECAICLEKEYSDESA-MIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSFEEL 81 (103)
Q Consensus 12 ~~~~~~~~~~~~C~IC~~~~~~~~~~-~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 81 (103)
........+...|+||++ .+..... ...++|||.||..|+..|+... .+...||+||..+....+..+
T Consensus 6 ~~~~~~~~~~~~C~IC~~-~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 6 SGNLDALREVLECPICME-SFTEEQLRPKLLHCGHTICRQCLEKLLASS-INGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp CCSCCCCCSCCBCTTTCC-BCCTTSSCEEECSSSCEEEHHHHHHHHHHC-SSCBCCTTTCCCBCCSSTTTS
T ss_pred ccChhhccCCCCCccCCc-cccccCCCeEECCCCChhhHHHHHHHHHcC-CCCcCCCCCCCcccchhHHHH
Confidence 333444567789999999 6554332 5667999999999999999875 234789999998876654433
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.62 E-value=5.3e-16 Score=90.14 Aligned_cols=53 Identities=34% Similarity=0.879 Sum_probs=45.5
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
..++..|+||++ .+..+..+..++|+|.||..||..|+... .+||+||..+..
T Consensus 37 ~~~~~~C~IC~~-~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCS-EYVKGDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTE-ECCTTCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCCBSSC
T ss_pred cCCCCCCcccCh-hhcCCCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCccCCC
Confidence 356678999999 77777777778999999999999999877 799999998864
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.60 E-value=4e-16 Score=82.48 Aligned_cols=51 Identities=37% Similarity=0.933 Sum_probs=43.2
Q ss_pred CCccccccccccccCCCCceEecC-CCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQ-CSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
+++..|+||++ .+..+..+..++ |+|.||..|+.+|+..+ .+||+||+.+.
T Consensus 3 ~~~~~C~IC~~-~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLA-ELEDGEEARFLPRCGHGFHAECVDMWLGSH----STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCC-CCCTTSCCEECSSSCCEECTTHHHHTTTTC----CSCSSSCCCSC
T ss_pred CCCCcCccCCc-cccCCCceEECCCCCCcccHHHHHHHHHcC----CcCcCCCCEeE
Confidence 56779999999 776666666777 99999999999999876 79999998764
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=84.27 Aligned_cols=63 Identities=21% Similarity=0.387 Sum_probs=47.5
Q ss_pred cCCCCCCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCh
Q 034125 9 CGEGQRSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSF 78 (103)
Q Consensus 9 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~ 78 (103)
...+.......+...|+||++ .+.. + +..++|+|.||..||..|+... ..||+||..+...+.
T Consensus 3 ~~~~~~~~~~~~~~~C~IC~~-~~~~-p-~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 3 SGSSGNLSELTPYILCSICKG-YLID-A-TTITECLHTFCKSCIVRHFYYS----NRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCCCCCCCCCCGGGSCTTTSS-CCSS-C-EECSSSCCEECHHHHHHHHHHC----SSCTTTCCCCCSSCS
T ss_pred CcchhhHhhcCCCCCCCCCCh-HHHC-c-CEECCCCCHHHHHHHHHHHHcC----CcCCCcCcccCcccc
Confidence 333444555577889999999 4433 2 3334899999999999999887 899999998875544
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.57 E-value=1e-15 Score=84.66 Aligned_cols=57 Identities=23% Similarity=0.729 Sum_probs=45.6
Q ss_pred CCCCccccccccccccCC----CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCh
Q 034125 17 HTDEEAECAICLEKEYSD----ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSF 78 (103)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~----~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~ 78 (103)
...++..|+||++ .+.. +.....++|||.||..|+..|+..+ .+||+||..+....+
T Consensus 6 ~~~~~~~C~IC~~-~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 6 RPSGTVSCPICMD-GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINHKRY 66 (71)
T ss_dssp CCTTCCBCTTTCC-BHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCCCSC
T ss_pred CCCCCCCCcccCh-hhhccccccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCccChhhe
Confidence 3456789999999 5443 2344667899999999999999988 799999999876554
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.5e-15 Score=84.17 Aligned_cols=53 Identities=30% Similarity=0.755 Sum_probs=40.6
Q ss_pred CCCccccccccccccCC-----------CCceEec-CCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSD-----------ESAMIRM-QCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~-----------~~~~~~~-~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
..++..|+||++ .+.. +..+..+ +|+|.||..||.+|+..+ .+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~-~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~~~~ 76 (81)
T 2ecl_A 12 DVECDTCAICRV-QVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQDWVV 76 (81)
T ss_dssp SCCCSCBTTTTB-CTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCBCCE
T ss_pred cCCCCCCcccCh-hhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCCcch
Confidence 346678999998 5532 2323344 599999999999999987 799999998754
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.56 E-value=4.2e-15 Score=78.42 Aligned_cols=51 Identities=27% Similarity=0.683 Sum_probs=42.1
Q ss_pred CCccccccccccccCC-CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSD-ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
.+...|+||++ .+.. ...+..++|+|.||..|+..|+... .+||+||..+.
T Consensus 3 ~~~~~C~IC~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLE-DIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCC-CCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCSSC
T ss_pred CCCCcCcccCh-hhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCcCC
Confidence 45678999999 5543 3356677899999999999999988 89999998774
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3e-15 Score=83.09 Aligned_cols=54 Identities=24% Similarity=0.516 Sum_probs=42.5
Q ss_pred CCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 14 RSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
......+...|+||++ .+.. ...++|+|.||..||..|+... ..||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~-~~~~---~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 8 NTAPSLTVPECAICLQ-TCVH---PVSLPCKHVFCYLCVKGASWLG----KRCALCRQEIPE 61 (71)
T ss_dssp CCCSSSSCCBCSSSSS-BCSS---EEEETTTEEEEHHHHHHCTTCS----SBCSSSCCBCCH
T ss_pred CcccCCCCCCCccCCc-ccCC---CEEccCCCHHHHHHHHHHHHCC----CcCcCcCchhCH
Confidence 3444567789999999 4433 2445899999999999999876 899999998753
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.54 E-value=9.8e-15 Score=81.67 Aligned_cols=61 Identities=23% Similarity=0.567 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCccccccccccccCCCCceEecC-CCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 10 GEGQRSNHTDEEAECAICLEKEYSDESAMIRMQ-CSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 10 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
..+.......+...|+||++ .+. .+ ..++ |||.||..||..|+... +...||+||..+...
T Consensus 4 ~~~~~~~~~~~~~~C~IC~~-~~~-~p--~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 4 GSSGEDDPIPDELLCLICKD-IMT-DA--VVIPCCGNSYCDECIRTALLES--DEHTCPTCHQNDVSP 65 (74)
T ss_dssp SCCSCCCCSCGGGSCSSSCC-CCT-TC--EECSSSCCEECTTHHHHHHHHS--SSSCCSSSCCSSCCT
T ss_pred CcccccccCCCCCCCcCCCh-HHh-CC--eEcCCCCCHHHHHHHHHHHHhc--CCCcCCCCCCcCCCc
Confidence 33444455577889999999 443 33 3468 99999999999999875 236899999976433
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=82.31 Aligned_cols=55 Identities=18% Similarity=0.479 Sum_probs=43.5
Q ss_pred CCCCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 12 GQRSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 12 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
+.......+...|+||++ .+. .+ ..++|+|.||..||..|+... ..||+||..+.
T Consensus 6 ~~~~~~~~~~~~C~IC~~-~~~-~p--~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~ 60 (81)
T 2csy_A 6 SGGSEEEEIPFRCFICRQ-AFQ-NP--VVTKCRHYFCESCALEHFRAT----PRCYICDQPTG 60 (81)
T ss_dssp CCCSSCCCCCSBCSSSCS-BCC-SE--EECTTSCEEEHHHHHHHHHHC----SBCSSSCCBCC
T ss_pred CCCcccCCCCCCCcCCCc-hhc-Ce--eEccCCCHhHHHHHHHHHHCC----CcCCCcCcccc
Confidence 333445567789999999 443 32 346999999999999999877 89999999886
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=79.43 Aligned_cols=57 Identities=30% Similarity=0.595 Sum_probs=43.2
Q ss_pred CCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPS 77 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~ 77 (103)
....+...|+||++ .+. . ...++|||.||..|+..|+... .....||+||..+....
T Consensus 15 ~~~~~~~~C~IC~~-~~~-~--~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLD-ILQ-K--PVTIDCGHNFCLKCITQIGETS-CGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCS-BCS-S--EEECTTCCEEEHHHHHHHCSSS-CSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCc-ccC-C--eEEcCCCChhhHHHHHHHHHcC-CCCCCCCCCCCcCCccc
Confidence 33467889999999 444 2 3445999999999999999742 23478999999887654
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=78.76 Aligned_cols=58 Identities=17% Similarity=0.415 Sum_probs=43.3
Q ss_pred CCCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 034125 13 QRSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPS 77 (103)
Q Consensus 13 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~ 77 (103)
.......+...|+||++ .+.. +.. ++|||.||..|+..|+... ...||+||..+...+
T Consensus 7 ~~~~~~~~~~~C~IC~~-~~~~-p~~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 7 GFVKTVEDKYKCEKCHL-VLCS-PKQ--TECGHRFCESCMAALLSSS---SPKCTACQESIVKDK 64 (66)
T ss_dssp CSCCSCCCCEECTTTCC-EESS-CCC--CSSSCCCCHHHHHHHHTTS---SCCCTTTCCCCCTTT
T ss_pred hhhhcCCcCCCCCCCCh-HhcC-eeE--CCCCCHHHHHHHHHHHHhC---cCCCCCCCcCCChhh
Confidence 33344467889999999 5443 333 5899999999999999632 278999999886543
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.51 E-value=6e-15 Score=79.91 Aligned_cols=54 Identities=24% Similarity=0.743 Sum_probs=43.5
Q ss_pred CccccccccccccCCC----CceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCh
Q 034125 20 EEAECAICLEKEYSDE----SAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSF 78 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~----~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~ 78 (103)
++..|+||++ .+... ..+..++|||.||..|+..|+... .+||+||..+...++
T Consensus 2 ~~~~C~IC~~-~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMD-GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCC-BHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC----SBCTTTCCBCTTTCE
T ss_pred CCCCCCccCh-hhhCccccCCCEEeCCCCCchhHHHHHHHHHcC----CCCCCCCccCCccce
Confidence 4678999999 55432 334566899999999999999987 799999999876554
No 19
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.9e-14 Score=80.53 Aligned_cols=60 Identities=25% Similarity=0.659 Sum_probs=46.0
Q ss_pred CCCCCCCCCccccccccccccCCCCceEecCCC-----chhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 12 GQRSNHTDEEAECAICLEKEYSDESAMIRMQCS-----HIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 12 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
+..+....++..|.||++ .+..+..+ .+||. |.||..||.+|+..+ +..+||+||..+..
T Consensus 6 s~~s~~~~~~~~C~IC~~-~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 6 SGTSITPSSQDICRICHC-EGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKYEFIM 70 (80)
T ss_dssp CCCCCCCTTSCCCSSSCC-CCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCCBCCC
T ss_pred CCCCCCCCCCCCCeEcCc-cccCCCee-EeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCeeec
Confidence 444555567789999998 55544444 57896 999999999999887 23589999998864
No 20
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=2.4e-14 Score=85.98 Aligned_cols=56 Identities=29% Similarity=0.507 Sum_probs=41.5
Q ss_pred CccccccccccccCCCC---------------ceEecCCCchhhHHHHHHHHHhcC-CCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDES---------------AMIRMQCSHIFHADCITPWLEERL-GKSCACPVCPFQMPLP 76 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~---------------~~~~~~C~H~f~~~Cl~~~~~~~~-~~~~~CP~Cr~~~~~~ 76 (103)
.+..|+||++ .+.... .+..++|+|.||..||..|+.... ....+||+||..+...
T Consensus 24 ~~~~C~ICl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICME-KLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTE-ETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCCh-hhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999 654321 334678999999999999996532 2347999999988644
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.4e-15 Score=83.11 Aligned_cols=53 Identities=32% Similarity=0.877 Sum_probs=42.4
Q ss_pred CCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPS 77 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~ 77 (103)
....+...|+||++ .+.. ..++|+|.||..|+..|+... ..||+||..+....
T Consensus 10 ~~~~~~~~C~IC~~-~~~~----~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMD-GRAD----LILPCAHSFCQKCIDKWSDRH----RNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCC-SCCS----EEETTTEEECHHHHHHSSCCC----SSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCc-CccC----cccCCCCcccHHHHHHHHHCc----CcCCCcCCcccCCC
Confidence 34466789999999 4433 456999999999999999866 89999998886443
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=7e-14 Score=79.44 Aligned_cols=59 Identities=34% Similarity=0.689 Sum_probs=44.3
Q ss_pred CCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcC--CCCCCCCCCCCCCCCCCh
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERL--GKSCACPVCPFQMPLPSF 78 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~--~~~~~CP~Cr~~~~~~~~ 78 (103)
....+...|+||++ .+. .+ ..++|+|.||..|+..|+.... .+...||+||..+....+
T Consensus 14 ~~~~~~~~C~IC~~-~~~-~p--~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 14 EMIKEEVTCPICLE-LLK-EP--VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CCCCTTTSCTTTCS-CCS-SC--EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred HhCccCCCCcCCCh-hhC-cc--eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 33467789999999 443 33 3468999999999999998731 234799999998875543
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=78.48 Aligned_cols=58 Identities=28% Similarity=0.657 Sum_probs=43.6
Q ss_pred CCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhc--CCCCCCCCCCCCCCCCCCh
Q 034125 17 HTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEER--LGKSCACPVCPFQMPLPSF 78 (103)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~--~~~~~~CP~Cr~~~~~~~~ 78 (103)
...+...|+||++ .+. .+ ..++|+|.||..|+..|+... ..+...||+||..+....+
T Consensus 15 ~~~~~~~C~IC~~-~~~-~p--~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 15 NVKEEVTCPICLE-LLT-QP--LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCCCTTTCS-CCS-SC--BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred HccCCCCCCCCCc-ccC-Cc--eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 3467789999999 443 33 335899999999999999872 1234899999998875443
No 24
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.44 E-value=8.6e-14 Score=82.98 Aligned_cols=50 Identities=32% Similarity=0.669 Sum_probs=40.4
Q ss_pred CccccccccccccCCC---------------CceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDE---------------SAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
++..|+||++ .+... ..+..++|+|.||..||..|+..+ .+||+||+.+.
T Consensus 36 ~~d~CaIC~~-~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRN-HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCS-CTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC----SBCSSSCSBCC
T ss_pred CCCCCccCCh-hHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC----CcCcCCCCcce
Confidence 5678999999 55432 124557899999999999999987 89999999864
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.43 E-value=7.4e-14 Score=76.59 Aligned_cols=49 Identities=33% Similarity=0.818 Sum_probs=40.4
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
+++..|+||++ .+.. ....++|||.||..|+..|+..+ .+||+||..+.
T Consensus 3 ~~~~~C~IC~~-~~~~--~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLE-DPSN--YSMALPCLHAFCYVCITRWIRQN----PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCS-CCCS--CEEETTTTEEESTTHHHHHHHHS----CSTTTTCCCCC
T ss_pred CCCCCCeeCCc-cccC--CcEecCCCCeeHHHHHHHHHhCc----CcCcCCChhhH
Confidence 45678999999 4432 23567899999999999999887 79999999875
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=75.61 Aligned_cols=64 Identities=22% Similarity=0.463 Sum_probs=49.2
Q ss_pred CccCCCCCCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 7 GACGEGQRSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 7 ~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
|+.+++......+....|+||++ .+..+ .....|+|.||..||.+|++.+ +..+||+||..+..
T Consensus 1 ~~~~~~~~~~y~~~i~~C~IC~~-~i~~g--~~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 1 GSSGSSGRETYPDAVKICNICHS-LLIQG--QSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDYWPH 64 (74)
T ss_dssp CCCCCCCCCCCSSSSCBCSSSCC-BCSSS--EECSSSCCEECHHHHHHHSTTC--SSCCCTTTCSCCCS
T ss_pred CCCCccchhhccCCCCcCcchhh-HcccC--CccCCCCchhhHHHHHHHHHhc--CCCCCCCCcCcCCC
Confidence 34455666777788899999999 65543 3444799999999999999765 33789999988753
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.4e-13 Score=72.49 Aligned_cols=49 Identities=35% Similarity=0.737 Sum_probs=37.5
Q ss_pred CCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCC
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVC 69 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~C 69 (103)
....+...|+||++ .+. .+ ..++|||.||..||..|+... .....||+|
T Consensus 15 ~~~~~~~~C~IC~~-~~~-~p--~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLD-ILQ-KP--VTIDCGHNFCLKCITQIGETS-CGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCS-BCS-SC--EECTTSSEECHHHHHHHHHHC-SSCCCCSCC
T ss_pred HhCccCCCCCcCCc-hhC-Ce--EEeCCCCcchHHHHHHHHHcC-CCCCcCcCC
Confidence 34467889999999 444 33 345999999999999999863 234789998
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=78.12 Aligned_cols=52 Identities=23% Similarity=0.595 Sum_probs=41.1
Q ss_pred CCCCCccccccccccccCCCCceEecC-CCchhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQ-CSHIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
....+...|+||++ .+. .+ ..++ |||.||..||..|+... +...||+||..+
T Consensus 8 ~~~~~~~~C~IC~~-~~~-~p--~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKD-IMT-DA--VVIPCCGNSYCDECIRTALLES--DEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTE-ECS-SC--EECTTTCCEECHHHHHHHHHHC--TTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCCh-hhc-Cc--eECCCCCCHHHHHHHHHHHHhc--CCCcCcCCCCcC
Confidence 34467789999999 444 44 3458 99999999999999865 236899999987
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=6.7e-14 Score=78.76 Aligned_cols=58 Identities=31% Similarity=0.709 Sum_probs=43.4
Q ss_pred CCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhc---CCCCCCCCCCCCCCCCCC
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEER---LGKSCACPVCPFQMPLPS 77 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~---~~~~~~CP~Cr~~~~~~~ 77 (103)
....+...|+||++ .+.. +. .++|||.||..|+..|+... ..+...||+||..+....
T Consensus 7 ~~~~~~~~C~IC~~-~~~~-p~--~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 7 GNVQEEVTCPICLE-LLTE-PL--SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCCEETTTTE-ECSS-CC--CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hhcccCCCCcCCCc-ccCC-ee--ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 33467789999999 5443 33 35899999999999998763 123479999999887644
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.39 E-value=4.9e-13 Score=72.77 Aligned_cols=56 Identities=20% Similarity=0.574 Sum_probs=40.8
Q ss_pred CccccccccccccCCCC-ceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCh
Q 034125 20 EEAECAICLEKEYSDES-AMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSF 78 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~-~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~ 78 (103)
++..|+||++..+.... ....++|||.||..|+..|+... ...||+||..+...++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCccccccc
Confidence 46789999992222222 22446899999999999997654 2689999998876554
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.38 E-value=1.2e-13 Score=85.59 Aligned_cols=49 Identities=31% Similarity=0.887 Sum_probs=40.0
Q ss_pred CccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
++..|+||++ .+. .+ ..++|||.||..||..|+... .+||+||..+...
T Consensus 52 ~~~~C~iC~~-~~~-~~--~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSE-YFI-EA--VTLNCAHSFCSYCINEWMKRK----IECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCS-BCS-SE--EEETTSCEEEHHHHHHHTTTC----SBCTTTCCBCCCE
T ss_pred ccCCCcccCc-ccC-Cc--eECCCCCCccHHHHHHHHHcC----CcCCCCCCcCCCC
Confidence 4568999999 443 33 445999999999999999877 8999999998654
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.1e-13 Score=71.31 Aligned_cols=53 Identities=34% Similarity=0.840 Sum_probs=38.5
Q ss_pred CCCCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCC
Q 034125 12 GQRSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVC 69 (103)
Q Consensus 12 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~C 69 (103)
+.......+...|+||++ .+.. + ..++|+|.||..||..|+... .....||+|
T Consensus 6 ~~~~~~~~~~~~C~IC~~-~~~~-p--~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 6 SGALENLQVEASCSVCLE-YLKE-P--VIIECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp SSCSSCSCCCCBCSSSCC-BCSS-C--CCCSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred hhHhhccccCCCCccCCc-ccCc-c--EeCCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 334444567889999999 5443 3 335899999999999997642 134789998
No 33
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.38 E-value=4.1e-13 Score=75.48 Aligned_cols=53 Identities=19% Similarity=0.367 Sum_probs=41.4
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPS 77 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~ 77 (103)
..+...|+||++ . ...+. .++|||.||..||..|+... ..+||+||..+....
T Consensus 5 ~~~~~~C~IC~~-~-~~~Pv--~~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLE-L-MKDPV--IVSTGQTYERSSIQKWLDAG---HKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSC-C-CSSEE--EETTTEEEEHHHHHHHHTTT---CCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccc-c-ccCCE--EcCCCCeecHHHHHHHHHHC---cCCCCCCcCCCChhh
Confidence 356789999999 4 34433 34899999999999999752 278999999886543
No 34
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.36 E-value=7.4e-13 Score=74.87 Aligned_cols=57 Identities=18% Similarity=0.436 Sum_probs=41.7
Q ss_pred CCCccccccccccccCCC-CceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCh
Q 034125 18 TDEEAECAICLEKEYSDE-SAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSF 78 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~ 78 (103)
..++..|+||++ .+... ..+..++|||.||..|+..++... ...||.||..+....+
T Consensus 8 ~~~~~~CpICle-~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~---~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCME-PLEIDDINFFPCTCGYQICRFCWHRIRTDE---NGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCC-BCCTTTTTCCSSTTSCCCCHHHHHHHTTSS---CSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCc-cCccccccccccCCCCCcCHHHHHHHHhcC---CCCCCCCCCccCCCch
Confidence 467789999999 55432 233323499999999999987532 3789999998876544
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.34 E-value=3.2e-13 Score=82.39 Aligned_cols=55 Identities=24% Similarity=0.739 Sum_probs=44.4
Q ss_pred CCccccccccccccCCC----CceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCh
Q 034125 19 DEEAECAICLEKEYSDE----SAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSF 78 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~----~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~ 78 (103)
.+...|+||++ .+... ..+..++|||.||..||..|+..+ .+||+||..+.....
T Consensus 5 ~~~~~C~IC~~-~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMD-GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCC-BHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC----SBCTTTCCBCTTTCE
T ss_pred CCCCCCcccCh-hhhCccccccCeEecCCCChhhHHHHHHHHHhC----CCCCCCCCcCccccc
Confidence 46789999999 55432 334667999999999999999887 799999998876554
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.33 E-value=3.2e-13 Score=79.51 Aligned_cols=53 Identities=32% Similarity=0.724 Sum_probs=41.3
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPS 77 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~ 77 (103)
.+...|+||++ .+.. + +..++|||.||..||..|+.... ..||+||..+....
T Consensus 20 ~~~~~C~IC~~-~~~~-p-~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICME-KLRD-A-RLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCS-BCSS-E-EECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBCCGGG
T ss_pred CCCCCCccCCc-cccC-c-cccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcCCHHH
Confidence 46788999999 5433 2 23268999999999999998762 58999999886433
No 37
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.33 E-value=1.2e-13 Score=83.02 Aligned_cols=56 Identities=25% Similarity=0.620 Sum_probs=42.6
Q ss_pred CCCCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 12 GQRSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 12 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
........++..|+||++ .+. .+ ..++|||.||..||..|+... ...||+||..+.
T Consensus 6 ~~~~~~~~~~~~C~iC~~-~~~-~p--~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~ 61 (115)
T 3l11_A 6 PKDAIPSLSECQCGICME-ILV-EP--VTLPCNHTLCKPCFQSTVEKA---SLCCPFCRRRVS 61 (115)
T ss_dssp CTTCCCCHHHHBCTTTCS-BCS-SC--EECTTSCEECHHHHCCCCCTT---TSBCTTTCCBCH
T ss_pred cccccCCCCCCCCccCCc-ccC-ce--eEcCCCCHHhHHHHHHHHhHC---cCCCCCCCcccC
Confidence 333445567889999999 443 33 345999999999999998653 278999999875
No 38
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.31 E-value=2.1e-13 Score=82.58 Aligned_cols=50 Identities=32% Similarity=0.669 Sum_probs=1.0
Q ss_pred CccccccccccccCCCC---------------ceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDES---------------AMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~---------------~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
++..|+||++ .+.... .+..++|+|.||..||..|+..+ .+||+||..+.
T Consensus 47 ~~d~CaICl~-~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRN-HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 111 (117)
T ss_dssp CC--------------------------------------------------------------------
T ss_pred CCCcCeECCh-hhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC----CcCCCCCCeee
Confidence 4578999999 654311 22334799999999999999987 89999999864
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.30 E-value=2.6e-12 Score=75.75 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=43.4
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCChh
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSFE 79 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 79 (103)
..+.+.||||++ +...+++. +|||.|+..||..|+... .+||+||..+....+.
T Consensus 26 ~p~~~~CpI~~~--~m~dPV~~--~cGhtf~r~~I~~~l~~~----~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 26 APDEFRDPLMDT--LMTDPVRL--PSGTIMDRSIILRHLLNS----PTDPFNRQTLTESMLE 79 (100)
T ss_dssp CSTTTBCTTTCS--BCSSEEEE--TTTEEEEHHHHHHHTTSC----SBCSSSCCBCCTTSSE
T ss_pred CcHhhCCcCccC--cccCCeEC--CCCCEEchHHHHHHHHcC----CCCCCCCCCCChhhce
Confidence 356789999999 55555444 899999999999999865 7999999988765443
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=7.9e-13 Score=77.52 Aligned_cols=51 Identities=35% Similarity=0.767 Sum_probs=40.4
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
.+...|+||++ .+.. + +..++|||.||..|+..|+... ..||+||..+...
T Consensus 20 ~~~~~C~IC~~-~~~~-p-~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 20 DDLLRCGICFE-YFNI-A-MIIPQCSHNYCSLCIRKFLSYK----TQCPTCCVTVTEP 70 (99)
T ss_dssp HHHTBCTTTCS-BCSS-E-EECTTTCCEEEHHHHHHHHTTC----CBCTTTCCBCCGG
T ss_pred CCCCCcccCCh-hhCC-c-CEECCCCCHhhHHHHHHHHHCC----CCCCCCCCcCChh
Confidence 45678999999 5443 2 2334899999999999999876 7999999988653
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.29 E-value=1.4e-12 Score=82.84 Aligned_cols=51 Identities=33% Similarity=0.689 Sum_probs=39.7
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
.+...|+||++ .+.. .+..++|||.||..||..|+... ...||+||..+..
T Consensus 52 ~~~~~C~IC~~-~~~~--p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLD-MLKN--TMTTKECLHRFCADCIITALRSG---NKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSS-BCSS--EEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred CCCCCCcccCh-HhhC--cCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence 45668999999 5443 23445899999999999999863 2789999998853
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.29 E-value=1.5e-12 Score=77.42 Aligned_cols=51 Identities=29% Similarity=0.668 Sum_probs=41.3
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
.+...|+||++ .+.. .+..++|||.||..||..|+... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~-~~~~--p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGG-YFID--ATTIIECLHSFCKTCIVRYLETS----KYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSS-BCSS--EEEETTTCCEEEHHHHHHHHTSC----SBCTTTCCBSCSS
T ss_pred CCcCCCccCCh-HHhC--cCEeCCCCChhhHHHHHHHHHhC----CcCcCCCcccccc
Confidence 56789999999 5433 23334899999999999999877 8999999988754
No 43
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.27 E-value=1.6e-12 Score=79.09 Aligned_cols=50 Identities=24% Similarity=0.604 Sum_probs=39.7
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
.+...|+||++ .+. .+ ..++|||.||..||..|+... ...||+||..+..
T Consensus 50 ~~~~~C~IC~~-~~~-~p--~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQE-LVF-RP--ITTVCQHNVCKDCLDRSFRAQ---VFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSS-BCS-SE--EECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCT
T ss_pred ccCCCCCcCCh-HHc-Cc--EEeeCCCcccHHHHHHHHhHC---cCCCCCCCccCCC
Confidence 45678999999 444 33 445999999999999999844 2589999998865
No 44
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.27 E-value=4.7e-12 Score=74.43 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=42.7
Q ss_pred CCccccccccccccCCCCceEecCCC-chhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCChh
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCS-HIFHADCITPWLEERLGKSCACPVCPFQMPLPSFE 79 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 79 (103)
.+.+.||||++ +...+++ ++|| |.|+..||..|+... .+||+||..+....+.
T Consensus 20 p~~~~CpI~~~--~m~dPV~--~~cG~htf~r~cI~~~l~~~----~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 20 CDEFLDPIMST--LMCDPVV--LPSSRVTVDRSTIARHLLSD----QTDPFNRSPLTMDQIR 73 (98)
T ss_dssp CTTTBCTTTCS--BCSSEEE--CTTTCCEEEHHHHHHHTTTS----CBCTTTCSBCCTTTSE
T ss_pred cHhcCCcCccc--cccCCeE--CCCCCeEECHHHHHHHHHhC----CCCCCCCCCCChhhce
Confidence 56789999999 4555443 5899 999999999999875 7999999988755443
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=2.4e-12 Score=76.74 Aligned_cols=54 Identities=31% Similarity=0.693 Sum_probs=41.1
Q ss_pred CccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCh
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSF 78 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~ 78 (103)
+...|+||++ .+. .+. .++|||.||..|+..|+... .+...||+||..+....+
T Consensus 20 ~~~~C~IC~~-~~~-~p~--~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLE-LIK-EPV--STKCDHIFCKFCMLKLLNQK-KGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCC-CCS-SCC--BCTTSCCCCSHHHHHHHHSS-SSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccCh-hhc-CeE--ECCCCCHHHHHHHHHHHHhC-CCCCCCcCCCCcCCHhhc
Confidence 4678999999 443 333 35899999999999999865 233689999998865443
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=4.5e-12 Score=76.57 Aligned_cols=54 Identities=26% Similarity=0.494 Sum_probs=42.5
Q ss_pred CCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
....+...|+||++ .+. .+ ..++|||.||..||..|+.... ..||+||..+...
T Consensus 13 ~~~~~~~~C~IC~~-~~~-~p--~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 13 PPLESKYECPICLM-ALR-EA--VQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLEN 66 (118)
T ss_dssp SCCCGGGBCTTTCS-BCS-SE--EECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcCCh-hhc-Ce--EECCcCChhhHHHHHHHHhhCC---CCCCCCCCCcCHH
Confidence 34467889999999 443 33 4458999999999999998772 3899999988653
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=5.1e-12 Score=76.99 Aligned_cols=56 Identities=23% Similarity=0.688 Sum_probs=44.4
Q ss_pred CCCCccccccccccccCC----CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 034125 17 HTDEEAECAICLEKEYSD----ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPS 77 (103)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~----~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~ 77 (103)
...+...|+||++ .+.. ......++|||.||..|+.+|+... .+||+||..+....
T Consensus 68 i~~~~~~C~iC~~-~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 68 IGSGTVSCPICMD-GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINHKR 127 (133)
T ss_dssp CSSSSCBCTTTCC-BHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC----SBCTTTCCBCCGGG
T ss_pred cCCCCCCCCCCCC-ccccccccCcceEeCCCCChhhHHHHHHHHHcC----CCCCCCCCcCChhc
Confidence 3467788999999 5443 2233556899999999999999988 89999999886554
No 48
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.3e-11 Score=66.92 Aligned_cols=56 Identities=16% Similarity=0.501 Sum_probs=41.8
Q ss_pred ccCCCCCCCCCCCccccccccccccCCCCceEecCCCch-hhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 8 ACGEGQRSNHTDEEAECAICLEKEYSDESAMIRMQCSHI-FHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 8 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
+.++........+...|+||++ . ...+..+||+|. ||..|+.. . ..||+||..+..
T Consensus 2 ~~~s~e~e~~~~~~~~C~IC~~-~---~~~~v~~pCgH~~~C~~C~~~----~----~~CP~CR~~i~~ 58 (68)
T 2ea5_A 2 SSGSSGVEPSEENSKDCVVCQN-G---TVNWVLLPCRHTCLCDGCVKY----F----QQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCCCCCSCCCSSCCSSSSS-S---CCCCEETTTTBCCSCTTHHHH----C----SSCTTTCCCCCC
T ss_pred CCccccccccCCCCCCCCCcCc-C---CCCEEEECCCChhhhHHHHhc----C----CCCCCCCcchhc
Confidence 3444555556667889999999 3 334567799999 99999973 3 689999998753
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.20 E-value=1.2e-11 Score=70.78 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=41.6
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
..+.+.|+||++ +...++ .++|||.|+..||..|+... .+||+|+..+...
T Consensus 11 ~p~~~~CpI~~~--~m~dPV--~~~cGhtf~r~~I~~~l~~~----~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDT--LMTDPV--RLPSGTVMDRSIILRHLLNS----PTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCS--BCSSEE--ECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCGG
T ss_pred CchheECcccCc--hhcCCe--ECCCCCEECHHHHHHHHhcC----CCCCCCcCCCChH
Confidence 357889999999 445544 34899999999999999976 7999999987643
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.19 E-value=7.2e-12 Score=78.74 Aligned_cols=50 Identities=20% Similarity=0.530 Sum_probs=39.9
Q ss_pred CccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
+...|+||++ .+ ..+ ..++|||.||..||..|+... ...||+||..+...
T Consensus 77 ~~~~C~IC~~-~~-~~p--v~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQE-LV-YQP--VTTECFHNVCKDCLQRSFKAQ---VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSS-BC-SSE--EECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCTT
T ss_pred cCCEeecCCh-hh-cCC--EEcCCCCchhHHHHHHHHHhC---CCcCCCCCccCCCC
Confidence 5678999999 44 333 336999999999999999864 25899999998755
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.19 E-value=1.4e-11 Score=67.06 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=38.0
Q ss_pred CCccccccccccccCCCCceEec--CCCch-hhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRM--QCSHI-FHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~-f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
.++..|+||++ .. .....+ ||||. ||..|+..|.... ..||+||..+.
T Consensus 6 ~~~~~C~IC~~-~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQG-RP---KNGCIVHGKTGHLMACFTCAKKLKKRN----KPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSS-SC---SCEEEEETTEEEEEECHHHHHHHHHTT----CCCTTTCCCCC
T ss_pred CCcCCCCcCCC-CC---CCEEEECCCCCChhhHHHHHHHHHHcC----CcCCCcCcchh
Confidence 46678999999 32 223333 99999 8999999999866 78999999874
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.18 E-value=6.4e-12 Score=75.54 Aligned_cols=51 Identities=24% Similarity=0.532 Sum_probs=40.2
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
.+...|+||++ .+ ..+ ..++|||.||..||..|+.... ..||+||..+...
T Consensus 21 ~~~~~C~IC~~-~~-~~p--~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 21 VKSISCQICEH-IL-ADP--VETSCKHLFCRICILRCLKVMG---SYCPSCRYPCFPT 71 (116)
T ss_dssp HHHTBCTTTCS-BC-SSE--EECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCGG
T ss_pred cCCCCCCCCCc-Hh-cCc--EEcCCCCcccHHHHHHHHhHCc---CcCCCCCCCCCHh
Confidence 45778999999 44 333 3369999999999999998731 6899999988643
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.18 E-value=1.2e-11 Score=67.04 Aligned_cols=51 Identities=16% Similarity=0.469 Sum_probs=38.7
Q ss_pred CCCccccccccccccCCCCceEecCCCch-hhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHI-FHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
......|+||++ .. ....+..+||||. ||..|+..|.... ..||+||..+.
T Consensus 4 ~~~~~~C~IC~~-~~-~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~ 55 (63)
T 2vje_B 4 QNLLKPCSLCEK-RP-RDGNIIHGRTGHLVTCFHCARRLKKAG----ASCPICKKEIQ 55 (63)
T ss_dssp GGGGSBCTTTSS-SB-SCEEEEETTEEEEEECHHHHHHHHHTT----CBCTTTCCBCC
T ss_pred CCcCCCCcccCC-cC-CCeEEEecCCCCHhHHHHHHHHHHHhC----CcCCCcCchhh
Confidence 345678999999 32 2222333499998 9999999998766 78999999874
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.07 E-value=1.1e-10 Score=82.97 Aligned_cols=48 Identities=27% Similarity=0.681 Sum_probs=38.0
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
...|+||++ .+ . ....++|||.||..|+..|+... ...||+||..+..
T Consensus 332 ~~~C~ICle-~~-~--~pv~lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAE-ND-K--DVKIEPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSS-SB-C--CEEEETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCE
T ss_pred CCCCCccCc-CC-C--CeEEeCCCChhhHHHHHHHHhcC---CCCCCCCCCccCC
Confidence 368999999 43 2 24556999999999999999842 1789999998764
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=2.2e-11 Score=64.51 Aligned_cols=47 Identities=23% Similarity=0.530 Sum_probs=36.4
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
.+...|+||++ .+.. + ..++|||.||..|+..| . ..||+||..+..+
T Consensus 4 ~~~~~C~IC~~-~~~~-p--~~l~CgH~fC~~Ci~~~---~----~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQA-EAKC-P--KLLPCLHTLCSGCLEAS---G----MQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCS-SCBC-C--SCSTTSCCSBTTTCSSS---S----SSCSSCCSSSSCC
T ss_pred ccCCCceEeCC-ccCC-e--EEcCCCCcccHHHHccC---C----CCCCcCCcEeecC
Confidence 56788999999 5443 3 34589999999998761 2 6899999988654
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.06 E-value=7.4e-11 Score=75.15 Aligned_cols=54 Identities=26% Similarity=0.493 Sum_probs=42.5
Q ss_pred CCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
....+.+.|+||++ .+ ..+ ..++|||.||..||..|+.... ..||+||..+...
T Consensus 13 ~~~~~~~~C~IC~~-~~-~~p--v~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 13 PPLESKYECPICLM-AL-REA--VQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLEN 66 (170)
T ss_dssp SCCCGGGBCTTTCS-BC-SSE--EECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCGG
T ss_pred cCCCCCCCCCCCCh-hh-cCc--EECCCCCHHHHHHHHHHHHhCC---CCCCCCccCcchh
Confidence 34477889999999 44 333 3458999999999999998762 4899999988653
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=7.8e-11 Score=68.55 Aligned_cols=54 Identities=24% Similarity=0.494 Sum_probs=40.1
Q ss_pred CCccccccccccccCCCCceEecC-CCchhhHHHHHHHHHhcC--CCCCCCCC--CCCC-CCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQ-CSHIFHADCITPWLEERL--GKSCACPV--CPFQ-MPLP 76 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Cl~~~~~~~~--~~~~~CP~--Cr~~-~~~~ 76 (103)
.+.+.||||++ +...+++ ++ |||.|+..||..|+.... .+..+||+ |+.. +...
T Consensus 5 ~~~~~CPI~~~--~~~dPV~--~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 5 SSGFTCPITKE--EMKKPVK--NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SSCCBCTTTCS--BCSSEEE--ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CcEeECcCcCc--hhcCCEE--cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 56789999999 4444433 45 999999999999997641 23469999 9866 5433
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.02 E-value=1.5e-10 Score=78.15 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=42.4
Q ss_pred CCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPS 77 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~ 77 (103)
......+.|+||++ +...+++ ++|||+||..||..|+.... .+||+||.++....
T Consensus 203 ~~~~~~~~c~i~~~--~~~dPv~--~~~gh~f~~~~i~~~~~~~~---~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 203 RDIPDYLCGKISFE--LMREPCI--TPSGITYDRKDIEEHLQRVG---HFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCCCSTTBCTTTCS--BCSSEEE--CSSCCEEETTHHHHHHHHTC---SSCTTTCCCCCGGG
T ss_pred CCCCcccCCcCcCC--HhcCCeE--CCCCCEECHHHHHHHHHHCC---CCCcCCCCCCchhc
Confidence 34457889999999 4555443 48999999999999998751 45999999886433
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.02 E-value=6.9e-11 Score=65.90 Aligned_cols=44 Identities=25% Similarity=0.655 Sum_probs=34.7
Q ss_pred CCccccccccccccCCCCceEecCCCch-hhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHI-FHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
.++..|+||++ .+ .. ...++|||. ||..|+..| ..||+||..+.
T Consensus 22 ~~~~~C~iC~~-~~-~~--~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMD-RN-IA--IVFVPCGHLVTCKQCAEAV--------DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSS-SB-CC--EEEETTCCBCCCHHHHTTC--------SBCTTTCCBCS
T ss_pred ccCCCCCCCCC-CC-CC--EEEcCCCChhHHHHhhhcC--------ccCCCcCcCcc
Confidence 34678999999 33 22 455699999 999999876 47999999875
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.01 E-value=2.6e-11 Score=75.50 Aligned_cols=49 Identities=18% Similarity=0.488 Sum_probs=38.8
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
.+.+.|+||++ .+ ..+ ..++|||.||..||..|+... ...||+||..+.
T Consensus 29 ~~~~~C~IC~~-~~-~~p--v~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRN-VL-RRP--FQAQCGHRYCSFCLASILSSG---PQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCS-BC-SSE--EECTTSCEEEHHHHHHHGGGS---CEECHHHHHTTC
T ss_pred CcCcCCCCCCh-hh-cCc--EECCCCCccCHHHHHHHHhcC---CCCCCCCCCccc
Confidence 56789999999 44 333 335899999999999999755 258999998764
No 61
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=3.4e-11 Score=72.55 Aligned_cols=49 Identities=22% Similarity=0.663 Sum_probs=38.3
Q ss_pred CCccccccccccccCCCCceEec-CCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRM-QCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPS 77 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~ 77 (103)
.+...|+||++ .+.. + ..+ +|||.||..||..|+. ..||+||..+....
T Consensus 20 ~~~~~C~IC~~-~~~~-p--v~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 20 EKLLRCSRCTN-ILRE-P--VCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWIQD 69 (117)
T ss_dssp HHTTSCSSSCS-CCSS-C--BCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSCSS
T ss_pred hhCCCCCCCCh-HhhC-c--cEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcccc
Confidence 56789999999 5433 2 334 8999999999999976 46999999885443
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=9.4e-11 Score=68.06 Aligned_cols=53 Identities=34% Similarity=0.719 Sum_probs=38.9
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhc--CC--CCCCCCC--CCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEER--LG--KSCACPV--CPFQ 72 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~--~~--~~~~CP~--Cr~~ 72 (103)
.+..+|+||++ .+.....+...+|+|.||..|+..++..+ .+ ....||. |+..
T Consensus 3 ~~~~~C~IC~~-~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLG-EYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCC-CCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCc-ccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35678999999 54444333334799999999999998754 11 2358999 9887
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.2e-10 Score=63.28 Aligned_cols=44 Identities=25% Similarity=0.668 Sum_probs=33.6
Q ss_pred CccccccccccccCCCCceEecCCCch-hhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHI-FHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
+...|+||++ .+ .. ...++|||. ||..|+.. . ..||+||..+..
T Consensus 24 ~~~~C~IC~~-~~-~~--~~~~pCgH~~~C~~C~~~----~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMD-RN-IA--IVFVPCGHLVTCKQCAEA----V----DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCS-SC-CC--BCCSSSCCCCBCHHHHHH----C----SBCTTTCCBCCC
T ss_pred CCCCCCcCCC-CC-CC--EEEecCCCHHHHHHHhhC----C----CCCccCCceecC
Confidence 3567999999 43 22 345699999 99999953 2 689999998854
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.95 E-value=7.6e-10 Score=59.40 Aligned_cols=52 Identities=25% Similarity=0.608 Sum_probs=38.5
Q ss_pred CCCccccccccccccCCCCceEecCCC--c---hhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCS--H---IFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~--H---~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
.++...|.||++ .. .++ + .+||. + .||..||.+|+..+ +..+||+|+..+..
T Consensus 3 ~~~~~~CrIC~~-~~-~~~-l-~~PC~C~gs~~~~H~~Cl~~W~~~~--~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNE-EL-GNE-R-FRACGCTGELENVHRSCLSTWLTIS--RNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTE-EC-SCC-C-CCSCCCSSGGGSCCHHHHHHHHHHH--TCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeec-CC-CCc-e-ecCcCCCCchhhhHHHHHHHHHHhC--CCCccCCCCCeeec
Confidence 356678999999 42 222 2 46854 4 89999999999875 33799999988753
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.85 E-value=1.3e-09 Score=70.25 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=42.1
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCh
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSF 78 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~ 78 (103)
..+.+.||||++ +...+++ ++|||+|+..||..|+... + .+||+|+.++....+
T Consensus 103 ip~~f~CPI~~e--lm~DPV~--~~~Ghtfer~~I~~~l~~~--~-~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 103 IPDYLCGKISFE--LMREPCI--TPSGITYDRKDIEEHLQRV--G-HFDPVTRSPLTQDQL 156 (179)
T ss_dssp CCGGGBCTTTCS--BCSSEEE--CTTSCEEEHHHHHHHHHHT--C-SBCTTTCCBCCGGGC
T ss_pred CcHhhcccCccc--cCCCCeE--CCCCCEECHHHHHHHHHhC--C-CCCCCCcCCCChhhC
Confidence 367889999999 4455444 4999999999999999875 1 379999998865433
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.82 E-value=8.5e-10 Score=77.24 Aligned_cols=57 Identities=25% Similarity=0.617 Sum_probs=40.3
Q ss_pred CCccccccccccccCCCCce---E--ecCCCchhhHHHHHHHHHhcCC-------CCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAM---I--RMQCSHIFHADCITPWLEERLG-------KSCACPVCPFQMPLP 76 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~---~--~~~C~H~f~~~Cl~~~~~~~~~-------~~~~CP~Cr~~~~~~ 76 (103)
+...+|+||++ .+.....+ . ..+|+|.||..||.+|+++... -...||+||.++...
T Consensus 306 e~~~ECaICys-~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFA-YRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCC-SSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccce-eecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 56778999999 65542211 1 1369999999999999986411 114699999987543
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.2e-09 Score=74.04 Aligned_cols=58 Identities=24% Similarity=0.509 Sum_probs=43.4
Q ss_pred CCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCC--CCCCCCCCChh
Q 034125 17 HTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPV--CPFQMPLPSFE 79 (103)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~--Cr~~~~~~~~~ 79 (103)
.......||||++ +...++ ....|||.|+..||..|+... +...||+ |+..+...++.
T Consensus 177 ~~~~el~CPIcl~--~f~DPV-ts~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 177 GGKIELTCPITCK--PYEAPL-ISRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp SSBCCSBCTTTSS--BCSSEE-EESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCEECGGGEE
T ss_pred CCceeeECcCccC--cccCCe-eeCCCCCcccHHHHHHHHHhC--CCCCCCcccccCcCchhhCC
Confidence 3467788999999 444443 334799999999999999754 3468999 99987654443
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.81 E-value=1.1e-09 Score=61.74 Aligned_cols=45 Identities=29% Similarity=0.613 Sum_probs=34.5
Q ss_pred CCccccccccccccCCCCceEecCCCch-hhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHI-FHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
.+...|+||++ . ...+..+||||. ||..|+..| ..||+||..+..
T Consensus 16 ~~~~~C~IC~~-~---~~~~v~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCE-E---EINSTFCPCGHTVCCESCAAQL--------QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSS-S---BCCEEEETTCBCCBCHHHHTTC--------SBCTTTCCBCCE
T ss_pred CCCCEeEEeCc-c---cCcEEEECCCCHHHHHHHHHhc--------CcCCCCCchhhC
Confidence 34568999999 3 233456699999 999998754 479999998753
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.59 E-value=8.4e-09 Score=72.48 Aligned_cols=43 Identities=23% Similarity=0.735 Sum_probs=34.2
Q ss_pred CccccccccccccCCCCceEecCCCch-hhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHI-FHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
++..|+||++ .+ .. ...+||||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~-~~-~~--~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMD-KE-VS--VVFIPCGHLVVCQECAPSL--------RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSS-SB-CC--EEEETTCCEEECTTTGGGC--------SBCTTTCCBCC
T ss_pred CCCCCCccCC-cC-Cc--eEEcCCCChhHhHHHHhcC--------CcCCCCCCCcc
Confidence 4678999999 33 32 455699999 999999865 47999999875
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.36 E-value=2.5e-07 Score=49.56 Aligned_cols=52 Identities=12% Similarity=0.237 Sum_probs=39.3
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCChh
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPSFE 79 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 79 (103)
.+.|+|+++ .+ .++ +...++||.|...||.+|+... .+||+.+..+...++.
T Consensus 3 ~~~CpIs~~-~m-~dP-V~~~~sG~~yer~~I~~~l~~~----~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGK-VP-RRP-VLSPKSRTIFEKSLLEQYVKDT----GNDPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCS-CC-SSE-EEETTTTEEEEHHHHHHHHHHH----SBCTTTCCBCCGGGCE
T ss_pred eEEecCCCC-CC-CCC-EEeCCCCcEEcHHHHHHHHHhC----CCCcCCcCCCChhhcE
Confidence 368999999 43 333 2222799999999999999887 6799999888655443
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.31 E-value=5.2e-07 Score=52.58 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=33.9
Q ss_pred ccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 23 ECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 23 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
.|++|-- ......+.+||+|.||..|+..|..... ..||.|+.++.
T Consensus 3 fC~~C~~---Pi~iygRmIPCkHvFCydCa~~~~~~~~---k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGL---PIKVYGRMIPCKHVFCYDCAILHEKKGD---KMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCS---BCSEEEEEETTCCEEEHHHHHHHHHTTC---CBCTTTCCBCS
T ss_pred ecCccCC---CeEEEeeeccccccHHHHHHHHHHhccC---CCCcCcCCeee
Confidence 4666665 2222345669999999999999886542 78999998774
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.15 E-value=2.4e-06 Score=57.25 Aligned_cols=53 Identities=21% Similarity=0.447 Sum_probs=40.8
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
+....|.||.+ ....+ ..+..|++.||..|+..|++.. +...||.|+..++..
T Consensus 178 ~~i~~C~iC~~-iv~~g--~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHS-LLIQG--QSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCS-BCSSC--EECSSSCCEECHHHHHHHTTTC--SSCBCTTTCCBCCSC
T ss_pred CCCCcCcchhh-HHhCC--cccCccChHHHHHHHHHHHHhC--CCCCCCCCCCCCCCC
Confidence 35778999999 54433 4444599999999999999765 336899999987644
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.70 E-value=4.3e-05 Score=41.39 Aligned_cols=52 Identities=23% Similarity=0.496 Sum_probs=39.2
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
......|.||.+ .+..+..-.|...||..|+..-+...+.+...||.|....
T Consensus 9 ~~~~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCC----CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345678999988 4455555569999999999887766555678999997643
No 74
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.53 E-value=0.00013 Score=41.17 Aligned_cols=57 Identities=18% Similarity=0.425 Sum_probs=38.1
Q ss_pred CCCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHH------------HhcCCCCCCCCCCCC
Q 034125 13 QRSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWL------------EERLGKSCACPVCPF 71 (103)
Q Consensus 13 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~------------~~~~~~~~~CP~Cr~ 71 (103)
........+..|.||-. +........--|+-+||..||.+.- ..+.....+||.|..
T Consensus 7 ~~~e~~~~D~~C~VC~~--~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 7 GPREPVVNDEMCDVCEV--WTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCCCCSCCCTTTCC--CCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CcccCCCCCcccCcccc--ccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 33444457889999987 4444443333589999999999862 111235688999954
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.10 E-value=0.00039 Score=40.13 Aligned_cols=35 Identities=14% Similarity=0.494 Sum_probs=28.3
Q ss_pred CccccccccccccCCCCceEecCCCchhhHHHHHHH
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHIFHADCITPW 55 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~ 55 (103)
++..|+||.+ .+........+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~-~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQ-DPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCS-SSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCC-CCCCCceEECCcCChHHhHHHCHHH
Confidence 4578999997 5556666666899999999999974
No 76
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=96.97 E-value=0.00037 Score=39.74 Aligned_cols=55 Identities=25% Similarity=0.593 Sum_probs=40.0
Q ss_pred CCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCC
Q 034125 14 RSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQ 72 (103)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~ 72 (103)
......++..|.||.. .+..+..-.|...||..|+.+-+...+.+...||.|+..
T Consensus 18 ~~~~d~n~~~C~vC~~----~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 18 FGTLDDSATICRVCQK----PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCSSSSSSSCCSSSCS----SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccccCCCCCcCcCcCC----CCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3344467778999998 345555446888999999987665545567899999764
No 77
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.70 E-value=0.00034 Score=40.18 Aligned_cols=47 Identities=23% Similarity=0.699 Sum_probs=35.4
Q ss_pred CccccccccccccCCCCceEecCC-CchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDESAMIRMQC-SHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C-~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
.-..|..|+- ....++ .| .|.+|..|+...+..+ ..||+|...++.+
T Consensus 27 G~~nCKsCWf----~~k~LV--~C~dHYLCl~CLtlmL~~S----drCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWF----ENKGLV--ECNNHYLCLNCLTLLLSVS----NRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCS----CCSSEE--ECSSCEEEHHHHHHTCSSS----SEETTTTEECCCC
T ss_pred CcccChhhcc----ccCCee--eecchhhHHHHHHHHHhhc----cCCcccCCcCCcc
Confidence 3456888887 222233 56 6999999999988877 8999999888644
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=96.60 E-value=0.00038 Score=36.96 Aligned_cols=53 Identities=21% Similarity=0.506 Sum_probs=37.3
Q ss_pred CCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 17 HTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
...++..|.||.+ .+..+..-.|...||..|+.+-+.....+...||.|+...
T Consensus 5 ~d~~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 5 SDHHMEFCRVCKD----GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCSSCTTTCC----CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred ccCCCCcCCCCCC----CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456778999988 3444444458889999999865544444668999997643
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=96.44 E-value=0.00083 Score=35.60 Aligned_cols=50 Identities=24% Similarity=0.634 Sum_probs=36.4
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
...+..|.||.. .+..+..-.|...||..|+..-+...+.+...||.|+.
T Consensus 8 ~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQ----GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSC----CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCC----CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 356678999998 34545544688899999998755444456689999954
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=96.44 E-value=0.0013 Score=33.43 Aligned_cols=48 Identities=27% Similarity=0.650 Sum_probs=32.7
Q ss_pred ccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 23 ECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 23 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
.|.||.. ....+..+..-.|...||..|+.+-+...+.+...||.|+.
T Consensus 2 ~C~vC~~-~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRK-KGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCC-SSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCC-CCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888987 32233444444688999999997644444445688999965
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=96.15 E-value=0.0016 Score=35.71 Aligned_cols=55 Identities=15% Similarity=0.295 Sum_probs=34.9
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
..+...|+||.. .......+..=.|...||..|+..-..........||.|+..+
T Consensus 15 ~~~~~~C~~C~~-~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNK-PDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTB-CCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCC-CCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 355667999998 3222234443458899999999754332222458899996543
No 82
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.12 E-value=0.027 Score=31.44 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCCCCccccccccccccCCCCceEecC-CCchhhHHHHHHHHHhc
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQ-CSHIFHADCITPWLEER 59 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Cl~~~~~~~ 59 (103)
........|.+|.+ .+.....+..-. =.|.||..|-+..++..
T Consensus 10 ~~~~a~l~CtlC~e-rLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 10 MANSGPLCCTICHE-RLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp SCSCCSCCCSSSCS-CCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCCCCeeEeecchh-hhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 33567789999999 544444444222 37999999999988765
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=95.94 E-value=0.0012 Score=42.22 Aligned_cols=51 Identities=24% Similarity=0.507 Sum_probs=37.8
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
.++..|.||.. .+..+..-.|...||..|+.+-+...+.+...||.|+...
T Consensus 2 ~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQN----GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCC----CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCC----CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35677999998 4555555568999999998776555445668999998654
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.70 E-value=0.00033 Score=36.51 Aligned_cols=49 Identities=27% Similarity=0.672 Sum_probs=33.9
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCP 70 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr 70 (103)
..++..|.||.. .+..+..-.|...||..|+.+-+...+.+...||.|.
T Consensus 6 ~~~~~~C~vC~~----~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRK----SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCC----SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCC----CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 456678999998 3455555568999999999764443334556787774
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=95.66 E-value=0.0013 Score=42.90 Aligned_cols=52 Identities=23% Similarity=0.461 Sum_probs=37.5
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
...+..|.||.. .+..+..=.|...||..|+.+-+...+.+...||.|+..-
T Consensus 4 d~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQN----GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCC----CEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345677999998 3444444458899999999776555445668999998643
No 86
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=95.29 E-value=0.027 Score=34.76 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=37.2
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHh-------cCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEE-------RLGKSCACPVCPF 71 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~-------~~~~~~~CP~Cr~ 71 (103)
+..+..|.||.+ .+..+..-.|...||..||.+-+.. .+.+...||.|+.
T Consensus 60 Dg~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456778999999 5665555469999999999976531 2345689999964
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=95.21 E-value=0.0042 Score=36.51 Aligned_cols=52 Identities=19% Similarity=0.427 Sum_probs=34.1
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCP 70 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr 70 (103)
..++..|.||.+ .-.....+..-.|...||..|+...+.........||.|+
T Consensus 4 ~~~~~~C~~C~~-~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDS-PGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCC-CCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCC-CCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 356788999998 3222233555569999999999875532223456777764
No 88
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=95.00 E-value=0.0013 Score=35.40 Aligned_cols=50 Identities=28% Similarity=0.616 Sum_probs=35.7
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
..++..|.||.+ .+..+..-.|...||..|+.+-+...+.+...||.|..
T Consensus 5 ~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRD----GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSC----CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCC----CCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 356778999998 34555544688899999998644443445678999954
No 89
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=94.96 E-value=0.022 Score=30.97 Aligned_cols=50 Identities=26% Similarity=0.536 Sum_probs=31.6
Q ss_pred CCccccccccccccCCCCceEecC--CC-chhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQ--CS-HIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
.+...| ||.. . ..+..+..=. |. ..||..|+. +...+.+...||.|+...
T Consensus 14 ~~~~~C-~C~~-~-~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQ-V-SYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCC-C-SCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCC-C-CCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 455667 8998 3 2344333223 54 589999997 333334668999997643
No 90
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=94.93 E-value=0.0035 Score=35.59 Aligned_cols=60 Identities=22% Similarity=0.407 Sum_probs=37.7
Q ss_pred CCCCCCCccccccccccccC-C-CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 14 RSNHTDEEAECAICLEKEYS-D-ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~-~-~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
+....+++..|.||.. ... . +..+..-.|.-.||..|+..-+ .+.+...||.|.......
T Consensus 18 ~~~~~~~~~~C~vC~~-~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 18 SQSLIDEDAVCSICMD-GESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp TTCCCCCCCCCSSCCS-SSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTTSC
T ss_pred CCCcCCCCCcCCcCCC-CCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCccchh
Confidence 3444567789999998 321 1 1233333588899999997532 234568899996544433
No 91
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.83 E-value=0.0013 Score=37.69 Aligned_cols=52 Identities=23% Similarity=0.482 Sum_probs=34.7
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
.+...|.||.. .......+..-.|...||..|+.+-+...+.+...||.|+.
T Consensus 14 ~~~~~C~vC~~-~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSR-GDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCC-SGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCC-cCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 55668999998 32222344444588999999997544443445688999954
No 92
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=94.81 E-value=0.0015 Score=34.43 Aligned_cols=49 Identities=27% Similarity=0.604 Sum_probs=34.7
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
..+..|.||.. .+..+..-.|...||..|+.+-+...+.+...||.|..
T Consensus 3 ~~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRK----SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCC----CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCC----CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 45678999998 34555555689999999998644443445678888843
No 93
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=94.69 E-value=0.048 Score=30.05 Aligned_cols=57 Identities=21% Similarity=0.375 Sum_probs=35.7
Q ss_pred CCCCCCccccccccccccC-CCCceEecCCCchhhHHHHHHHHHhc-CCCCCCCCCCCCCC
Q 034125 15 SNHTDEEAECAICLEKEYS-DESAMIRMQCSHIFHADCITPWLEER-LGKSCACPVCPFQM 73 (103)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~~~~~~~-~~~~~~CP~Cr~~~ 73 (103)
.+...+...| ||.. .+. ....+..-.|...||..|+.--.... ......||.|+...
T Consensus 6 ~~~~~~~~~C-~C~~-~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 6 SGMALVPVYC-LCRQ-PYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCCCCS-TTSC-SCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCccCCccEE-EcCC-ccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3344555666 9988 332 34455555689999999986433221 12458999997654
No 94
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=94.63 E-value=0.0043 Score=39.97 Aligned_cols=49 Identities=27% Similarity=0.644 Sum_probs=35.5
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
+..|.+|.. .+..+..-.|...||..|+.+-+...+.+...||.|+...
T Consensus 2 ~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQK----PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCC----CSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCC----CCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 457999998 3444555568899999999765544445668999997653
No 95
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=94.56 E-value=0.026 Score=32.19 Aligned_cols=49 Identities=27% Similarity=0.532 Sum_probs=30.6
Q ss_pred CccccccccccccCCCCceEecC--CC-chhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDESAMIRMQ--CS-HIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
+...| ||.. . ..+..+..=. |. ..||..|+. +...+.+...||.|+...
T Consensus 35 e~~yC-iC~~-~-~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQ-V-SYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCC-B-CCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCC-C-CCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44456 9998 3 2344433323 44 579999997 333334568999997654
No 96
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=94.52 E-value=0.072 Score=32.29 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=35.4
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHH-----Hhc--CCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWL-----EER--LGKSCACPVCPF 71 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~-----~~~--~~~~~~CP~Cr~ 71 (103)
+..+..|.||-+ .+..+..-.|-..||..||.+-+ ... +.....|++|+-
T Consensus 54 Dg~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 455667999998 45544444688999999999752 221 345689999954
No 97
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=94.34 E-value=0.0015 Score=37.10 Aligned_cols=53 Identities=19% Similarity=0.486 Sum_probs=35.3
Q ss_pred CCccccccccccccCC--CCceEecCCCchhhHHHHHHHHHh----cCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSD--ESAMIRMQCSHIFHADCITPWLEE----RLGKSCACPVCPFQ 72 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~--~~~~~~~~C~H~f~~~Cl~~~~~~----~~~~~~~CP~Cr~~ 72 (103)
+++..|.||.. .... +..+..=.|...||..|+.+-+.. ...+...|+.|+..
T Consensus 14 e~~~~C~vC~~-~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 14 EMGLACVVCRQ-MTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HHCCSCSSSCC-CCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCCcCCCCCC-CCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 55678999998 2221 333333358999999999875542 23466899999643
No 98
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=93.47 E-value=0.012 Score=33.92 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=32.5
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
++...| ||-. ....+..+..-.|...||..|+..-.... .....||.|+.
T Consensus 26 ~d~vrC-iC~~-~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~-p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGF-THDDGYMICCDKCSVWQHIDCMGIDRQHI-PDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSC-CSCSSCEEEBTTTCBEEETTTTTCCTTSC-CSSBCCTTTSS
T ss_pred CCCEEe-ECCC-ccCCCcEEEcCCCCCcCcCcCCCCCccCC-CCCEECCCCcC
Confidence 344567 8877 33344555555689999999986532222 23589999964
No 99
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.45 E-value=0.0093 Score=33.02 Aligned_cols=48 Identities=21% Similarity=0.560 Sum_probs=31.3
Q ss_pred ccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCC-CCCCCCCCC
Q 034125 23 ECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGK-SCACPVCPF 71 (103)
Q Consensus 23 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~-~~~CP~Cr~ 71 (103)
.|.||.. .-..+..+..-.|...||..|+.+-+...+.+ ...||.|..
T Consensus 28 ~C~vC~~-~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGG-KHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCC-CCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCC-cCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 5678886 22233334433588999999998655444344 688999964
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=93.37 E-value=0.014 Score=34.42 Aligned_cols=49 Identities=20% Similarity=0.516 Sum_probs=31.4
Q ss_pred ccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 23 ECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 23 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
.|.||.......+..+..-.|...||..|+.+-+...+.+...||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 4667775111122334444588999999997655554456689999974
No 101
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.35 E-value=0.019 Score=31.69 Aligned_cols=53 Identities=19% Similarity=0.432 Sum_probs=33.0
Q ss_pred CCccccccccccccCCCCceEec--CCCchhhHHHHHHHHHh-----cCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRM--QCSHIFHADCITPWLEE-----RLGKSCACPVCPFQM 73 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Cl~~~~~~-----~~~~~~~CP~Cr~~~ 73 (103)
.+...| ||-. ....+..+..= .|...||..|+.---.. .......||.|+...
T Consensus 14 ~~~~~C-iC~~-~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGN-SLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCC-CCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCC-cCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 456667 8998 33445555554 58889999998532211 112358899996543
No 102
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=93.23 E-value=0.0086 Score=32.50 Aligned_cols=48 Identities=23% Similarity=0.572 Sum_probs=29.7
Q ss_pred ccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCC-CCCCCCCCC
Q 034125 23 ECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGK-SCACPVCPF 71 (103)
Q Consensus 23 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~-~~~CP~Cr~ 71 (103)
.|.||.. .-..+..+..-.|...||..|+.+-+...+.+ ...||.|+.
T Consensus 20 ~C~~C~~-~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGG-RQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCC-CSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCC-cCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 3457775 21122233333588999999998655444444 689999964
No 103
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.10 E-value=0.0062 Score=33.13 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=33.7
Q ss_pred CCCCCCccccccccccccCCC-CceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 15 SNHTDEEAECAICLEKEYSDE-SAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
.....+...| ||.. ....+ ..+..-.|...||..|+.--..........||.|+.
T Consensus 10 ~~~~~~~~~C-~C~~-~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 10 RGVDNWKVDC-KCGT-KDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp CSSCSSEECC-TTCC-CSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CCCCCcceEe-eCCC-ccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 3445566778 7988 33333 345544688999999986432111234578888854
No 104
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=92.90 E-value=0.0035 Score=33.45 Aligned_cols=54 Identities=30% Similarity=0.664 Sum_probs=35.3
Q ss_pred CCCccccccccccccC--CCCceEecCCCchhhHHHHHHHHHh---cCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYS--DESAMIRMQCSHIFHADCITPWLEE---RLGKSCACPVCPFQ 72 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~--~~~~~~~~~C~H~f~~~Cl~~~~~~---~~~~~~~CP~Cr~~ 72 (103)
..++..|.||.. ... .+..+..-.|...||..|+..-+.. ...+...|+.|...
T Consensus 3 ~~~~~~C~vC~~-~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQE-EYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCC-CCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCC-CCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456778999998 322 2334444458999999999864322 13455889988543
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=92.44 E-value=0.0085 Score=33.20 Aligned_cols=48 Identities=23% Similarity=0.574 Sum_probs=29.1
Q ss_pred ccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCC-CCCCCCCC
Q 034125 23 ECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKS-CACPVCPF 71 (103)
Q Consensus 23 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~-~~CP~Cr~ 71 (103)
.|.||.. .-.....+..-.|...||..|+.+-+...+.+. ..||.|+.
T Consensus 28 ~C~vC~~-~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGG-RQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCC-CSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCC-CCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 3556665 211122233235888999999987665544444 79999974
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=91.66 E-value=0.27 Score=28.77 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=30.7
Q ss_pred Ccccccccccccc-----CCCCceEecCCCchhhHHHHHH---HHHhcCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEY-----SDESAMIRMQCSHIFHADCITP---WLEERLGKSCACPVCP 70 (103)
Q Consensus 20 ~~~~C~IC~~~~~-----~~~~~~~~~~C~H~f~~~Cl~~---~~~~~~~~~~~CP~Cr 70 (103)
-...|.+|+.... ..+..+....|+..||..|+.. ...........||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3467999987211 1224455567999999999952 2111112347788875
No 107
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=91.49 E-value=0.012 Score=31.80 Aligned_cols=55 Identities=13% Similarity=0.353 Sum_probs=32.7
Q ss_pred CCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 14 RSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
.-+...+...| ||.. .......+..-.|...||..|+..-.. .......||.|+.
T Consensus 12 ~~~~~~~~~~C-iC~~-~~~~~~MIqCd~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~ 66 (68)
T 3o70_A 12 ENLYFQGLVTC-FCMK-PFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 66 (68)
T ss_dssp --CTTTTCCCS-TTCC-CCTTCCEEECTTTCCEEETTTTTCCTT-SCCSSCCCHHHHT
T ss_pred ccCCCCCceEe-ECCC-cCCCCCEEECCCCCccccccccCcCcc-cCCCcEECCCCCC
Confidence 33444566677 9988 433333555556899999999864221 1124577887753
No 108
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=90.71 E-value=0.06 Score=31.59 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=33.3
Q ss_pred CCCccccccccccccCCCCceEec--CCCchhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRM--QCSHIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
..++..|.+|.+ .+..+..= .|...||..|+. +...+.+...||.|...+
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 456778999997 34444433 477899999997 444444567888765433
No 109
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=90.69 E-value=0.18 Score=26.76 Aligned_cols=36 Identities=31% Similarity=0.646 Sum_probs=22.8
Q ss_pred CCCccccccccccccCCC-CceEec-CCCchhhHHHHHH
Q 034125 18 TDEEAECAICLEKEYSDE-SAMIRM-QCSHIFHADCITP 54 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~-~~~~~~-~C~H~f~~~Cl~~ 54 (103)
.+....|++|.. .+... ..+..- .|...||..|+.-
T Consensus 5 ~~~~~~C~~C~~-p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 5 SDPVYPCGICTN-EVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp ----CBCTTTCS-BCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CCCcCcCccCCC-ccCCCCCeEecccCccccCchhccCC
Confidence 456678999999 43333 344544 6888999999853
No 110
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=90.47 E-value=0.024 Score=37.52 Aligned_cols=48 Identities=23% Similarity=0.572 Sum_probs=28.7
Q ss_pred ccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCC-CCCCCCCCC
Q 034125 23 ECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGK-SCACPVCPF 71 (103)
Q Consensus 23 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~-~~~CP~Cr~ 71 (103)
.|.+|.. .-..+..+..=.|...||..|+.+-+...+.+ ...||.|+.
T Consensus 176 ~C~vC~~-~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGG-RQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCC-CCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCC-CCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 4777876 22223344444588999999998755544444 688999964
No 111
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.15 E-value=0.49 Score=25.59 Aligned_cols=53 Identities=23% Similarity=0.519 Sum_probs=32.3
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhc-----CCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEER-----LGKSCACPVCPFQ 72 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~-----~~~~~~CP~Cr~~ 72 (103)
..+...| ||.. .+.....+..-.|...||..|+.--.... ......||.|+..
T Consensus 13 d~~~~~C-~C~~-~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 13 DPNALYC-ICRQ-PHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CTTCCCS-TTCC-CCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCCEE-ECCC-ccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3445556 8998 43333455544689999999985322110 1234899999643
No 112
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.81 E-value=0.14 Score=26.80 Aligned_cols=54 Identities=26% Similarity=0.525 Sum_probs=34.6
Q ss_pred CCCccccccccccccC-CCCceEecCCCchhhHHHHHHHHHhc-CCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYS-DESAMIRMQCSHIFHADCITPWLEER-LGKSCACPVCPFQ 72 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~~~~~~~-~~~~~~CP~Cr~~ 72 (103)
.++...|+||.. .+. ....+..-.|...||..|+.--.... ......||.|+..
T Consensus 3 ~~e~~~C~~C~~-~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGE-SYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCC-CCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCC-ccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 467778999998 443 23344444688999999986432211 1245789999653
No 113
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=89.72 E-value=0.12 Score=33.06 Aligned_cols=53 Identities=23% Similarity=0.450 Sum_probs=33.8
Q ss_pred ccccccccccccCCCC----ceEecCCCchhhHHHHHHHHH-----hc--CCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDES----AMIRMQCSHIFHADCITPWLE-----ER--LGKSCACPVCPFQMP 74 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~----~~~~~~C~H~f~~~Cl~~~~~-----~~--~~~~~~CP~Cr~~~~ 74 (103)
+..|+||.. .+..+. .+..-.|...||..|..---. .. ......||.|+..-+
T Consensus 2 G~~CpiC~k-~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDK-CYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCC-BCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcC-ccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 356999998 555543 444446899999999853211 00 001389999987554
No 114
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.40 E-value=0.45 Score=25.65 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=27.9
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
......|..|-. .+. +..+. .-+..||..| +.|-.|+..+
T Consensus 12 ~~~~~~C~~C~~-~I~-~~~~~--a~~~~~H~~C------------F~C~~C~~~L 51 (79)
T 1x62_A 12 AQKLPMCDKCGT-GIV-GVFVK--LRDRHRHPEC------------YVCTDCGTNL 51 (79)
T ss_dssp CCCCCCCSSSCC-CCC-SSCEE--CSSCEECTTT------------TSCSSSCCCH
T ss_pred CCCCCccccCCC-Ccc-CcEEE--ECcceeCcCc------------CeeCCCCCCC
Confidence 355678999999 433 33333 4677889888 5798998766
No 115
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=88.87 E-value=0.021 Score=29.86 Aligned_cols=48 Identities=25% Similarity=0.535 Sum_probs=29.1
Q ss_pred CCccccccccccccCCCCceEecC--CC-chhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQ--CS-HIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
.+...| ||.. . ..+..+..=. |. ..||..|+. +...+.+...||.|+.
T Consensus 7 ~e~~yC-~C~~-~-~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQ-V-SYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTE-E-CCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCC-C-CCCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345556 9988 3 2344333334 55 589999997 3333335678888853
No 116
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=88.66 E-value=2 Score=24.26 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=34.8
Q ss_pred CCccccccccccccC---CCC-ceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYS---DES-AMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~---~~~-~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
.....|.||-+ .+- .+. .+...-|+-..|..|..--... +...||.|++...
T Consensus 14 ~~~qiCqiCGD-~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke---G~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGD-QIGLTVEGDLFVACNECGFPACRPCYEYERRE---GTQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCC-BCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT---SCSSCTTTCCCCC
T ss_pred cCCCccccccC-ccccCCCCCEEEeeeccCChhhHHHHHHHHhc---cCccccccCCccc
Confidence 35579999999 422 122 2344458878999998753322 4589999988774
No 117
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=88.48 E-value=0.56 Score=25.48 Aligned_cols=42 Identities=21% Similarity=0.584 Sum_probs=29.6
Q ss_pred CCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
......|+.|-. .+.....+. .-+..||..| +.|-.|+..+.
T Consensus 12 ~~~~~~C~~C~~-~I~~~~~v~--a~~~~wH~~C------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 12 IRGPSHCAGCKE-EIKHGQSLL--ALDKQWHVSC------------FKCQTCSVILT 53 (80)
T ss_dssp CSSCSCCTTTCC-CCSSSCCEE--ETTEEECTTT------------CBCSSSCCBCS
T ss_pred CCCCCCCcCcCC-eeCCCeEEE--ECCccccccc------------CCcCcCCCCcC
Confidence 345678999999 544444444 3567788877 67999988775
No 118
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=88.30 E-value=0.023 Score=29.80 Aligned_cols=48 Identities=27% Similarity=0.556 Sum_probs=28.4
Q ss_pred CCccccccccccccCCCCceEecC--CC-chhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQ--CS-HIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
.+...| ||.. . ..+..+..=. |. ..||..|+. +...+.+...||.|+.
T Consensus 8 ~e~~~C-~C~~-~-~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQ-V-SYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTE-E-CCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCC-c-CCCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 344556 8988 3 2343333223 44 579999997 3333345678888853
No 119
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=88.10 E-value=0.056 Score=27.36 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=27.0
Q ss_pred ccccccccccCCCC-ceEec-CCCchhhHHHHHHHHHhcCCCCCCCCCCC
Q 034125 23 ECAICLEKEYSDES-AMIRM-QCSHIFHADCITPWLEERLGKSCACPVCP 70 (103)
Q Consensus 23 ~C~IC~~~~~~~~~-~~~~~-~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr 70 (103)
.|.||.. .+..+. .+..- .|...||..|+.--..........||.|+
T Consensus 4 ~cc~C~~-p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQR-PCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCC-CCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcC-ccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4678887 333232 44444 47788999997643221111348899885
No 120
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.91 E-value=0.029 Score=32.81 Aligned_cols=49 Identities=18% Similarity=0.478 Sum_probs=30.1
Q ss_pred ccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCC
Q 034125 23 ECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQ 72 (103)
Q Consensus 23 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~ 72 (103)
.|.||.. .......+..-.|...||..|+.+-+...+.+...||.|+.-
T Consensus 56 ~C~~C~~-~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQ-SGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCC-CSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCc-cCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 3556666 212222344345899999999986554444456788888543
No 121
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=86.63 E-value=1.4 Score=24.22 Aligned_cols=42 Identities=19% Similarity=0.566 Sum_probs=28.7
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
.....|..|-. .+.....+. .-+..||..| +.|-.|...+..
T Consensus 13 ~~~~~C~~C~~-~I~~~~~v~--a~~~~~H~~C------------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 13 PARETCVECQK-TVYPMERLL--ANQQVFHISC------------FRCSYCNNKLSL 54 (91)
T ss_dssp SSSCBCTTTCC-BCCTTSEEE--CSSSEEETTT------------CBCTTTCCBCCT
T ss_pred CCCCcCccCCC-ccCCceeEE--ECCCEECCCC------------CeeCCCCCCCCC
Confidence 45678999999 444334333 5677888887 578888877654
No 122
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=86.61 E-value=1.1 Score=24.23 Aligned_cols=44 Identities=23% Similarity=0.442 Sum_probs=29.5
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPS 77 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~ 77 (103)
.....|..|-. .+.....+. .-+..||..| +.|-.|+..+....
T Consensus 13 ~~~~~C~~C~~-~I~~~e~v~--a~~~~wH~~C------------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 13 GAGDLCALCGE-HLYVLERLC--VNGHFFHRSC------------FRCHTCEATLWPGG 56 (82)
T ss_dssp CSSCBCSSSCC-BCCTTTBCC--BTTBCCBTTT------------CBCSSSCCBCCTTS
T ss_pred CCCCCCcccCC-CcccceEEE--ECCCeeCCCc------------CEEcCCCCCcCCCc
Confidence 45578999999 443333333 3567788888 67888988775444
No 123
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=86.15 E-value=0.41 Score=24.99 Aligned_cols=36 Identities=22% Similarity=0.536 Sum_probs=24.7
Q ss_pred CCCCccccccccccccCCCCceEecCCCchhhHHHH
Q 034125 17 HTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCI 52 (103)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl 52 (103)
..++...|.||+...|..+.......|.-.||..|-
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCG 40 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCG 40 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSE
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeecccC
Confidence 346778999999966666655555556666666654
No 124
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=85.71 E-value=0.042 Score=29.03 Aligned_cols=48 Identities=25% Similarity=0.517 Sum_probs=28.8
Q ss_pred CCccccccccccccCCCCceEecC--CC-chhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQ--CS-HIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
++...| ||.. . ..+..+..=. |. ..||..|+. +...+.+...||.|+.
T Consensus 9 ~e~~yC-~C~~-~-~~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQ-V-SYGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTE-E-CCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCC-C-CCCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 345556 9988 3 3343333223 44 789999997 2333345688998854
No 125
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=85.44 E-value=0.65 Score=24.75 Aligned_cols=36 Identities=19% Similarity=0.462 Sum_probs=27.2
Q ss_pred CCCCCccccccccccccCCCCceEecCC-CchhhHHHHHHHH
Q 034125 16 NHTDEEAECAICLEKEYSDESAMIRMQC-SHIFHADCITPWL 56 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C-~H~f~~~Cl~~~~ 56 (103)
+..++..-|.||.+ . ..++.+.| +-.||..|+...-
T Consensus 3 ~~~ee~pWC~ICne-D----AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 3 SGSSGLPWCCICNE-D----ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SSCCCCSSCTTTCS-C----CCEEETTTTSEEECSSHHHHHT
T ss_pred CcCcCCCeeEEeCC-C----CeEEecCCCCceehHHHHHHHc
Confidence 34456677999999 2 33677889 8899999987754
No 126
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=84.24 E-value=1.2 Score=31.56 Aligned_cols=54 Identities=20% Similarity=0.462 Sum_probs=32.8
Q ss_pred ccccccccccccCCCCceEecCCCch--hhHHHHHHHHHhcCCCCCCCCCCCCCCCCCChh
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHI--FHADCITPWLEERLGKSCACPVCPFQMPLPSFE 79 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~--f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 79 (103)
...|||=+. .+. ..++...|.|. |=..-+..+.... ....||+|...+...++.
T Consensus 249 SL~CPlS~~-ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~--~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYT-RMK--YPSKSINCKHLQCFDALWFLHSQLQI--PTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSS-BCS--SEEEETTCCSSCCEEHHHHHHHHHHS--CCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccc-ccc--ccCcCCcCCCcceECHHHHHHHhhcC--CceeCCCCCcccCHHHee
Confidence 456887666 322 23455679998 4444444433333 568999999887655443
No 127
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=83.92 E-value=1.1 Score=24.04 Aligned_cols=50 Identities=22% Similarity=0.464 Sum_probs=32.3
Q ss_pred CCCcccccccccccc--CCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEY--SDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCP 70 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~--~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr 70 (103)
..++..|.||.. .. ..+..+..=.|.-.||..|+..-. -+.+...||.|+
T Consensus 13 ~~~~~~C~vC~~-~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~ 64 (71)
T 2ku3_A 13 IDEDAVCSICMD-GESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCL 64 (71)
T ss_dssp CCSSCSCSSSCC-CCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHH
T ss_pred CCCCCCCCCCCC-CCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCc
Confidence 356778999998 32 223333333588899999997532 223557888874
No 128
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=83.68 E-value=0.1 Score=29.69 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=28.6
Q ss_pred CCccccccccccccCCCCceEecCCC---chhhHHHHHHHHHhcCCCCCCCCC-CC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCS---HIFHADCITPWLEERLGKSCACPV-CP 70 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~---H~f~~~Cl~~~~~~~~~~~~~CP~-Cr 70 (103)
++...| ||.. . ..+..+..=.|. ..||..|+. +.....+...||. |+
T Consensus 24 ~~~~yC-iC~~-~-~~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 24 QEEVYC-FCRN-V-SYGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CCSCCS-TTTC-C-CSSSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CCCcEE-EeCC-C-CCCCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 445567 9998 2 234433332344 689999996 2332335688999 85
No 129
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=83.48 E-value=0.043 Score=32.36 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=28.9
Q ss_pred ccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCC
Q 034125 23 ECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCP 70 (103)
Q Consensus 23 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr 70 (103)
.|.||.. ....+..+..-.|...||..|+.+-+...+.+...||.|+
T Consensus 60 ~C~~C~~-~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 60 SCILCGT-SENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp CCTTTTC-CTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred ccCcccc-cCCCCceEEcCCCCccccccccCCCccCCCCCCeECcccc
Confidence 4667766 2223334444458899999999764444334557788774
No 130
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=83.43 E-value=1.3 Score=31.25 Aligned_cols=54 Identities=20% Similarity=0.396 Sum_probs=33.2
Q ss_pred ccccccccccccCCCCceEecCCCch--hhHHHHHHHHHhcCCCCCCCCCCCCCCCCCChh
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHI--FHADCITPWLEERLGKSCACPVCPFQMPLPSFE 79 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~--f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 79 (103)
...|||=+. .+.. ..+...|.|. |=..-+..+.... +...||+|.+.+...++.
T Consensus 215 SL~CPlS~~-ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~--~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKM-RLTI--PCRAVTCTHLQCFDAALYLQMNEKK--PTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCS-BCSS--EEEETTCCCCCCEEHHHHHHHHHHS--CCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccc-eecc--CCcCCCCCCCccCCHHHHHHHHhhC--CCeECCCCCcccCHHHeE
Confidence 456887666 3222 3455579998 5544444444433 568999999887654443
No 131
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=83.32 E-value=0.16 Score=31.80 Aligned_cols=51 Identities=24% Similarity=0.498 Sum_probs=32.3
Q ss_pred CCccccccccccccC-CCCceEecCCCchhhHHHHHHHHHh-cCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYS-DESAMIRMQCSHIFHADCITPWLEE-RLGKSCACPVCPF 71 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~~~~~~-~~~~~~~CP~Cr~ 71 (103)
++...| ||.. ... .+..+..-.|...||..|+.--... .......||.|+.
T Consensus 6 ~~~~~C-~C~~-~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKT-PEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTE-ECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCC-CCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 456678 9998 332 3334554468899999998532221 1234589999964
No 132
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=82.05 E-value=1.9 Score=23.74 Aligned_cols=35 Identities=14% Similarity=0.372 Sum_probs=24.5
Q ss_pred CCccccccccccccCC-CCceEecCCCchhhHHHHHH
Q 034125 19 DEEAECAICLEKEYSD-ESAMIRMQCSHIFHADCITP 54 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Cl~~ 54 (103)
.+...|.+|.. .|.. ......-.||.+||..|...
T Consensus 19 ~~~~~C~~C~~-~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGC-VFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCC-BCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCC-ccccchhcccccCCCcEEChHHhCC
Confidence 45567999999 5443 34455557999999999643
No 133
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=81.76 E-value=0.53 Score=28.58 Aligned_cols=52 Identities=17% Similarity=0.379 Sum_probs=31.6
Q ss_pred CCccccccccccc-cCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKE-YSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCP 70 (103)
Q Consensus 19 ~~~~~C~IC~~~~-~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr 70 (103)
.+...|.+|..+. +..+.......|.|.+|..|-.............|-+|+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~ 105 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICL 105 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhH
Confidence 4678899999933 244455666779999998886432111112234566664
No 134
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=81.05 E-value=0.96 Score=25.30 Aligned_cols=36 Identities=17% Similarity=0.409 Sum_probs=24.9
Q ss_pred CCCccccccccccccC-CCCceEecCCCchhhHHHHHH
Q 034125 18 TDEEAECAICLEKEYS-DESAMIRMQCSHIFHADCITP 54 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~~ 54 (103)
..+...|.+|.. .|. .......-.||.+||..|...
T Consensus 6 ~~~~~~C~~C~~-~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 6 SGMESRCYGCAV-KFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCSBCTTTCC-BCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCcCCCCcCcCC-cccCccccccCCCCCCEEChhHcCC
Confidence 345668999998 544 333445557999999998653
No 135
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=80.86 E-value=1.5 Score=24.55 Aligned_cols=35 Identities=17% Similarity=0.485 Sum_probs=24.5
Q ss_pred CCccccccccccccC-CCCceEecCCCchhhHHHHHH
Q 034125 19 DEEAECAICLEKEYS-DESAMIRMQCSHIFHADCITP 54 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~~ 54 (103)
.+...|.+|.. .|. .........||.+||..|...
T Consensus 18 ~~~~~C~~C~~-~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 18 SEAPNCMNCQV-KFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGCCBCTTTCC-BCCSSSCCEECTTTCCEECGGGSCE
T ss_pred ccCCcCcCCCC-cccchhhCccccCCCCEECCcccCC
Confidence 34567999998 544 334455557999999999654
No 136
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=80.72 E-value=0.5 Score=24.65 Aligned_cols=42 Identities=26% Similarity=0.574 Sum_probs=27.3
Q ss_pred ccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCC
Q 034125 23 ECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVC 69 (103)
Q Consensus 23 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~C 69 (103)
.|-.|.. .+........-.|++.||.+|=.-.-+.- .+||-|
T Consensus 17 ~C~~C~~-~~~~~~~y~C~~C~~~FC~dCD~fiHe~L----h~CPgC 58 (59)
T 1z60_A 17 FCYGCQG-ELKDQHVYVCAVCQNVFCVDCDVFVHDSL----HSCPGC 58 (59)
T ss_dssp EETTTTE-ECTTSEEECCTTTTCCBCHHHHHTTTTTS----CSSSTT
T ss_pred cccccCc-ccCCCccEECCccCcCcccchhHHHHhhc----cCCcCC
Confidence 4888888 44332223344599999999975544443 689987
No 137
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=80.18 E-value=2 Score=26.88 Aligned_cols=49 Identities=16% Similarity=0.485 Sum_probs=34.2
Q ss_pred CCCccccccccccccCCCCceEec--CCCchhhHHHHHHHHHhc------CCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRM--QCSHIFHADCITPWLEER------LGKSCACPVCP 70 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Cl~~~~~~~------~~~~~~CP~Cr 70 (103)
+..+..|.||-+ .+..+..- .|...||..||...+... ......|=+|.
T Consensus 76 DG~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 76 DGYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp TSSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 345667999988 44444433 488899999999887442 23457899995
No 138
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=79.24 E-value=1.2 Score=27.56 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=32.9
Q ss_pred CCcccccccccc-ccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCC
Q 034125 19 DEEAECAICLEK-EYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCP 70 (103)
Q Consensus 19 ~~~~~C~IC~~~-~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr 70 (103)
..+..|.+|..+ .+..+.......|.|.+|..|-. |.. ......|-+|+
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~--~~~~W~C~vC~ 115 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHP--EEQGWLCDPCH 115 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCS--SSSSCEEHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccC--CCCcEeeHHHH
Confidence 467899999994 23455667777899999999972 221 22445666664
No 139
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.13 E-value=0.47 Score=25.48 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=28.0
Q ss_pred CCccccccccccccCCCCceEecCCC---chhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCS---HIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~---H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
++...| ||.. . ..+..+..-.|. ..||..|+.- ...+.+...||.|+.
T Consensus 4 ~~~~yC-~C~~-~-~~g~MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 4 GSSGYC-ICNQ-V-SYGEMVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCTA 54 (70)
T ss_dssp SCCCCS-TTSC-C-CCSSEECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHHH
T ss_pred CCCeEE-EcCC-C-CCCCEeEeCCCCCCccCCccccccc--CcCCCCCEECCCCCc
Confidence 344555 6887 2 344444333342 6899999962 222345678998853
No 140
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=78.47 E-value=1.2 Score=24.44 Aligned_cols=35 Identities=31% Similarity=0.670 Sum_probs=24.3
Q ss_pred CCccccccccccccC-CCCceEecCCCchhhHHHHHH
Q 034125 19 DEEAECAICLEKEYS-DESAMIRMQCSHIFHADCITP 54 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~~ 54 (103)
.+...|.+|.. .|. .......-.||.+||..|...
T Consensus 17 ~~~~~C~~C~~-~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEK-EFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCC-BCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCC-cccCccccccCCCCCCEEChHHhCC
Confidence 44557999998 544 333455557999999999743
No 141
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.37 E-value=3.4 Score=22.08 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=31.7
Q ss_pred CCCCCCCCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 13 QRSNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 13 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
...........|+-|-. .+. +..+. .-+..||..| +.|-.|+..+...
T Consensus 7 ~~~~~~~~~~~C~~C~~-~I~-~~~v~--a~~~~~H~~C------------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 7 GEKARGLGKYICQKCHA-IID-EQPLI--FKNDPYHPDH------------FNCANCGKELTAD 54 (79)
T ss_dssp CCCCCCCCCCBCTTTCC-BCC-SCCCC--CSSSCCCTTT------------SBCSSSCCBCCTT
T ss_pred hhhhhccCCCCCccCCC-Eec-ceEEE--ECcceeCCCC------------CEeCCCCCccCCC
Confidence 33444455678999998 444 43333 4577788777 6799998887644
No 142
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=78.31 E-value=0.64 Score=21.50 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=11.2
Q ss_pred CCccccccccccccCC
Q 034125 19 DEEAECAICLEKEYSD 34 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~ 34 (103)
.+.+.||||+. .+..
T Consensus 3 ~EGFiCP~C~~-~l~s 17 (34)
T 3mjh_B 3 SEGFICPQCMK-SLGS 17 (34)
T ss_dssp SEEEECTTTCC-EESS
T ss_pred CcccCCcHHHH-HcCC
Confidence 46789999998 5443
No 143
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=77.95 E-value=1 Score=26.85 Aligned_cols=33 Identities=30% Similarity=0.586 Sum_probs=23.5
Q ss_pred CccccccccccccC-CCCceEecCCCchhhHHHHH
Q 034125 20 EEAECAICLEKEYS-DESAMIRMQCSHIFHADCIT 53 (103)
Q Consensus 20 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~ 53 (103)
+...|.+|.. .|. .......-.||.+||..|..
T Consensus 68 ~~~~C~~C~~-~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCMACGK-GFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCTTTCC-BCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCcCcCC-ccccccccccCCCCCeEEChHHhC
Confidence 3457999998 544 33445555799999999964
No 144
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=77.93 E-value=1.1 Score=35.52 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=39.8
Q ss_pred CCCccccccccccccCCCCceEecCCC-chhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRMQCS-HIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
..+.+.|||-++ +..++++ ++-| +.|=...|.+|+... .+||+=|.++...
T Consensus 888 iP~~F~cPIs~~--lM~DPVi--lpsG~~TydR~~I~~wl~~~----~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 888 VPDEFLDPLMYT--IMKDPVI--LPASKMNIDRSTIKAHLLSD----STDPFNRMPLKLE 939 (968)
T ss_dssp SCGGGBCTTTCS--BCSSEEE--CTTTCCEEEHHHHHHHHTTC----CBCTTTCCBCCGG
T ss_pred CcHHhCCcchhh--HHhCCeE--cCCCCEEECHHHHHHHHhcC----CCCCCCCCCCCcc
Confidence 356788999999 4555544 4877 689999999999876 7999998887643
No 145
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.79 E-value=1.2 Score=24.47 Aligned_cols=34 Identities=18% Similarity=0.440 Sum_probs=23.7
Q ss_pred CCccccccccccccC-CCCceEecCCCchhhHHHHH
Q 034125 19 DEEAECAICLEKEYS-DESAMIRMQCSHIFHADCIT 53 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~ 53 (103)
.+...|.+|.. .|. .......-.||.+||..|..
T Consensus 12 ~~~~~C~~C~~-~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSA-TFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCC-CCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCC-ccccchhhhhhcCCCcEEChhhcC
Confidence 44567999998 543 33345555799999998853
No 146
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=73.02 E-value=1.4 Score=25.48 Aligned_cols=52 Identities=23% Similarity=0.470 Sum_probs=32.3
Q ss_pred cccccccccccc-CCCCceEec-CCCchhhHHHHHHHHH------hcCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEY-SDESAMIRM-QCSHIFHADCITPWLE------ERLGKSCACPVCPFQM 73 (103)
Q Consensus 21 ~~~C~IC~~~~~-~~~~~~~~~-~C~H~f~~~Cl~~~~~------~~~~~~~~CP~Cr~~~ 73 (103)
...|+||.. .+ ..+..+..= .|...||..|+.--.. ........||.|+...
T Consensus 3 ~~~C~iC~~-p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRS-EVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCS-BCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCC-ccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999 43 233444443 5888999999853211 0112348999997543
No 147
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=72.66 E-value=3.3 Score=29.50 Aligned_cols=50 Identities=18% Similarity=0.479 Sum_probs=35.4
Q ss_pred CCCccccccccccccCCCCceEec--CCCchhhHHHHHHHHHhc------CCCCCCCCCCCC
Q 034125 18 TDEEAECAICLEKEYSDESAMIRM--QCSHIFHADCITPWLEER------LGKSCACPVCPF 71 (103)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Cl~~~~~~~------~~~~~~CP~Cr~ 71 (103)
+..+..|.+|-+ .+..+..- .|...||..||...+... ......|=+|.-
T Consensus 90 DG~~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 345667999988 45555555 688999999999987322 224488999953
No 148
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=72.55 E-value=2 Score=22.94 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=22.2
Q ss_pred cccccccccccC-CCCceEecCCCchhhHHHHH
Q 034125 22 AECAICLEKEYS-DESAMIRMQCSHIFHADCIT 53 (103)
Q Consensus 22 ~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~ 53 (103)
..|.+|.. .|. .......-.||.+||..|..
T Consensus 12 ~~C~~C~~-~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSK-KFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCC-BCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCC-ccCCccccccCCCCCEEEcccccC
Confidence 57999998 443 33445555799999999864
No 149
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.21 E-value=4.5 Score=21.22 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=29.4
Q ss_pred CccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
....|+.|-. .+.....+. .-+..||..| +.|..|+..+...
T Consensus 8 ~~~~C~~C~~-~I~~~~~v~--a~~~~~H~~C------------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDK-TVYFAEKVS--SLGKDWHKFC------------LKCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCC-BCCTTTEEE--ETTEEEETTT------------CBCSSSCCBCCTT
T ss_pred CCCCCcCCCC-EeECCeEEE--ECCeEeeCCC------------CCCCCCCCccCCC
Confidence 4568999999 444344443 4577888877 6799998887643
No 150
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=68.87 E-value=2.1 Score=24.64 Aligned_cols=14 Identities=29% Similarity=0.840 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHhc
Q 034125 46 IFHADCITPWLEER 59 (103)
Q Consensus 46 ~f~~~Cl~~~~~~~ 59 (103)
.||..||.+|+...
T Consensus 42 GFCRNCLskWy~~a 55 (105)
T 2o35_A 42 GFCRNCLSNWYREA 55 (105)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999754
No 151
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=68.79 E-value=2.2 Score=24.58 Aligned_cols=14 Identities=36% Similarity=0.881 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHhc
Q 034125 46 IFHADCITPWLEER 59 (103)
Q Consensus 46 ~f~~~Cl~~~~~~~ 59 (103)
.||..||.+|+...
T Consensus 41 GFCRNCLskWy~~a 54 (104)
T 3fyb_A 41 DFCRNCLAKWLMEA 54 (104)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999754
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.55 E-value=1.9 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.543 Sum_probs=23.2
Q ss_pred CccccccccccccC-CCCceEecCCCchhhHHHHH
Q 034125 20 EEAECAICLEKEYS-DESAMIRMQCSHIFHADCIT 53 (103)
Q Consensus 20 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~ 53 (103)
++..|.+|.. .|. .......-.||+.||..|..
T Consensus 160 ~~~~C~~C~~-~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRV-EFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCC-BCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCC-ccCCcccccccCCcCCEEChHHhC
Confidence 3568999998 543 33445555799999988854
No 153
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=67.64 E-value=12 Score=20.04 Aligned_cols=35 Identities=14% Similarity=0.525 Sum_probs=25.6
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHH
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITP 54 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~ 54 (103)
..+..|.+|.. ..........+.|.-.||..|+..
T Consensus 28 ~~~v~C~~C~~-~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQ-DPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCS-SSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCccCCcCCC-CCCCCCeeEccCccchhhhhhhHh
Confidence 34578999987 322344566778999999999975
No 154
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=67.23 E-value=8.1 Score=20.35 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=19.5
Q ss_pred CCCCCCccccccccccccCCCCceEecCCCchhhH
Q 034125 15 SNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHA 49 (103)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~ 49 (103)
.........|..|.. .+... .... .|+..||.
T Consensus 9 ~~~~~~~~rC~~C~k-kvgl~-~f~C-rCg~~FC~ 40 (64)
T 1wg2_A 9 SRPVRPNNRCFSCNK-KVGVM-GFKC-KCGSTFCG 40 (64)
T ss_dssp SCCSCCSCSCTTTCC-CCTTS-CEEC-TTSCEECS
T ss_pred CCCCCcCCcChhhCC-ccccc-CeEe-ecCCEecc
Confidence 333445678999998 32221 2333 69999984
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=67.20 E-value=3.8 Score=26.70 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=23.8
Q ss_pred CccccccccccccC-CCCceEecCCCchhhHHHHHH
Q 034125 20 EEAECAICLEKEYS-DESAMIRMQCSHIFHADCITP 54 (103)
Q Consensus 20 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~~ 54 (103)
.+..|.+|.. .|. ..+....-.||.+||..|...
T Consensus 163 ~~~~C~~C~~-~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRV-QFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCC-BCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCC-CCCccccccccCCCcCEeChhhcCC
Confidence 3458999998 444 334455567999999988643
No 156
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.76 E-value=5.7 Score=20.73 Aligned_cols=42 Identities=24% Similarity=0.571 Sum_probs=27.8
Q ss_pred CCccccccccccccCC-CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSD-ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
.....|+.|.. .+.. +..+. .-+..||..| +.|-.|...+..
T Consensus 9 ~~~~~C~~C~~-~I~~~~~~~~--a~~~~~H~~C------------F~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKG-GFAPAEKIVN--SNGELYHEQC------------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCC-BCCSTTTCEE--ETTEEECTTT------------CCCTTTCCCCGG
T ss_pred CCCCCchhcCC-ccCCCceEEE--eCccEecccc------------CeECCCCCCCCC
Confidence 34568999998 4432 33333 3567788777 678899887753
No 157
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=66.26 E-value=13 Score=19.99 Aligned_cols=42 Identities=14% Similarity=0.377 Sum_probs=29.1
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
.....|..|-. .+. +..+. .-+..||..| +.|-.|...+...
T Consensus 23 ~~~~~C~~C~~-~I~-~~~~~--a~~~~~H~~C------------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGS-GIV-GAVVK--ARDKYRHPEC------------FVCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCC-BCC-SCCEE--SSSCEECTTT------------CCCSSSCCCTTTS
T ss_pred CcCCCcccCCC-Eec-ccEEE--ECCceECccC------------CEecCCCCCCCCC
Confidence 44567999998 433 33333 4677899888 6799998887643
No 158
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=65.66 E-value=0.28 Score=24.65 Aligned_cols=44 Identities=14% Similarity=0.425 Sum_probs=26.3
Q ss_pred cccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCC
Q 034125 26 ICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPF 71 (103)
Q Consensus 26 IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~ 71 (103)
||.. .......+..-.|...||..|+.--... ......||.|+.
T Consensus 8 ~C~~-~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~-~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMK-PFAGRPMIECNECHTWIHLSCAKIRKSN-VPEVFVCQKCRD 51 (52)
T ss_dssp TTCC-BCTTCCEEECTTTCCEEETTTTTCCGGG-CCSSCCCHHHHT
T ss_pred EeCC-cCCCCCEEEcCCCCccccccccCCCccc-CCCcEECcCCCC
Confidence 6776 3333344554458889999998643221 124577887754
No 159
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=65.35 E-value=9.9 Score=20.00 Aligned_cols=32 Identities=13% Similarity=0.455 Sum_probs=19.8
Q ss_pred CCCCCCccccccccccccCCCCceEecCCCchhhH
Q 034125 15 SNHTDEEAECAICLEKEYSDESAMIRMQCSHIFHA 49 (103)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~ 49 (103)
.........|..|.. .+... .... .|+..||.
T Consensus 9 ~~~k~~~~rC~~C~k-kvgl~-~f~C-rCg~~FC~ 40 (64)
T 1wfh_A 9 PSPPQRPNRCTVCRK-RVGLT-GFMC-RCGTTFCG 40 (64)
T ss_dssp CCCCSSCCCCTTTCC-CCCTT-CEEC-SSSCEECT
T ss_pred CCCCCcCCcChhhCC-ccCcc-CEEe-ecCCEecc
Confidence 334456678999998 32221 2333 59999985
No 160
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=64.34 E-value=2.1 Score=25.48 Aligned_cols=46 Identities=17% Similarity=0.455 Sum_probs=26.8
Q ss_pred CCccccccccccccCC-CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSD-ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVC 69 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~C 69 (103)
.+...|..|.. .|.. ......-.||.+||..|........ ..|-.|
T Consensus 17 ~~~~~C~~C~~-~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~v----RVC~~C 63 (120)
T 1y02_A 17 GLEPSCKSCGA-HFANTARKQTCLDCKKNFCMTCSSQVGNGP----RLCLLC 63 (120)
T ss_dssp ---CCCTTTCC-CCSSGGGCEECTTTCCEECGGGEEC----C----CEEHHH
T ss_pred cccCcccCcCC-ccccccccccCCCCCCeeCHHHhCCCCCCc----eECHHH
Confidence 44568999988 4433 3345556799999999975533222 456555
No 161
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=64.12 E-value=6.7 Score=22.95 Aligned_cols=40 Identities=23% Similarity=0.490 Sum_probs=27.3
Q ss_pred CccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
....|+-|-. .+.....+. .-+..||..| +.|-.|+..+.
T Consensus 60 ~~~~C~~C~~-~I~~~~~v~--a~~~~wH~~C------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGG-KIADRFLLY--AMDSYWHSRC------------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSS-BCCSSSEEE--ETTEEEETTT------------SBCTTTCCBGG
T ss_pred cCCcCcCCCC-CcCCcEEEE--eCCcEEcccc------------cCcCcCCCccc
Confidence 3568999998 443332233 3677888888 67999988774
No 162
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=59.01 E-value=4.8 Score=21.10 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=5.0
Q ss_pred CCCCCCCCCCC
Q 034125 64 CACPVCPFQMP 74 (103)
Q Consensus 64 ~~CP~Cr~~~~ 74 (103)
+.|..|+..+.
T Consensus 28 F~C~~C~~~L~ 38 (76)
T 1iml_A 28 LKCEKCGKTLT 38 (76)
T ss_dssp CBCTTTCCBCC
T ss_pred CCccccCccCC
Confidence 34555544443
No 163
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=56.84 E-value=2.3 Score=30.00 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred CccccccccccccCC-CCceEecCCCchhhHHHHHHHHHhc---CCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSD-ESAMIRMQCSHIFHADCITPWLEER---LGKSCACPVCPFQ 72 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Cl~~~~~~~---~~~~~~CP~Cr~~ 72 (103)
+...|.+|.. .|.. .....+..||++||..|....+... ......|-.|-..
T Consensus 374 ~~~~c~~c~~-~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 374 HVMMCMNCGC-DFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCC-CCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 3467999998 4433 2334445799999999987654222 1123567777443
No 164
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=56.79 E-value=2.2 Score=18.74 Aligned_cols=12 Identities=42% Similarity=1.085 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCC
Q 034125 64 CACPVCPFQMPL 75 (103)
Q Consensus 64 ~~CP~Cr~~~~~ 75 (103)
..||+|+..++.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 689999886653
No 165
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.67 E-value=9.1 Score=19.61 Aligned_cols=41 Identities=17% Similarity=0.417 Sum_probs=26.0
Q ss_pred ccccccccccccCC-CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSD-ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 21 ~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
...|..|-. .+.. +..+. .-+..||..| +.|-.|...+...
T Consensus 5 ~~~C~~C~~-~I~~~~~~~~--a~~~~~H~~C------------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGE-TVMPGSRKLE--YGGQTWHEHC------------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCC-BCCSSSCEEC--STTCCEETTT------------CBCTTTCCBTTTS
T ss_pred CCCCccCCC-ccccCccEEE--ECccccCccc------------CeECCCCCcCCCC
Confidence 457888888 4333 22222 4567788777 6788888777543
No 166
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.62 E-value=11 Score=19.33 Aligned_cols=39 Identities=23% Similarity=0.652 Sum_probs=23.2
Q ss_pred ccccccccccccCC-CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSD-ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 21 ~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
...|..|-. .+.. ...+. .-+..||..| +.|-.|...+.
T Consensus 5 ~~~C~~C~~-~I~~~~~~~~--a~~~~~H~~C------------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGE-DVVGDGAGVV--ALDRVFHVGC------------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCS-CCCSSSCCEE--CSSSEECTTT------------CBCSSSCCBCT
T ss_pred CCCCccCCC-ccCCCceEEE--ECCCeEcccC------------CcccccCCcCC
Confidence 356777877 3332 22333 3466677766 56888877764
No 167
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=53.65 E-value=6 Score=22.95 Aligned_cols=25 Identities=20% Similarity=0.636 Sum_probs=16.0
Q ss_pred ecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 40 RMQCSHIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 40 ~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
+..||+.|. ...+....||.|+...
T Consensus 70 C~~CG~~F~---------~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVFK---------AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBCC---------CCSSCCSSCSSSCCCC
T ss_pred hhhCcCeec---------ccCCCCCCCcCCCCCc
Confidence 446999881 1222347899998753
No 168
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=52.27 E-value=7.9 Score=19.55 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=26.3
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
...|+.|-. .+. +..+ ..-+..||..| +.|-.|+..+..
T Consensus 5 ~~~C~~C~~-~I~-~~~~--~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRR-PIE-GRVV--NAMGKQWHVEH------------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTE-ECC-SCEE--CCTTSBEETTT------------CBCTTTCCBCSS
T ss_pred CCCCcccCC-Eec-ceEE--EECccccccCc------------CEECCCCCCCCC
Confidence 357888888 443 4332 24567788777 679999887754
No 169
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.15 E-value=10 Score=20.51 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=28.7
Q ss_pred CccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
....|+.|-. .+ .+..+. .-+..||..| +.|-.|+..+...
T Consensus 24 ~~~~C~~C~~-~I-~~~~v~--a~~~~~H~~C------------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQ-VI-RGPFLV--ALGKSWHPEE------------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCC-BC-CSCEEE--ETTEEECTTT------------CBCSSSCCBCSSS
T ss_pred CCCCCccCCC-Ee-cceEEE--ECCccccccC------------CccCCCCCCCCCC
Confidence 3557999998 44 344333 4678888887 6799998887643
No 170
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=51.52 E-value=2.6 Score=18.63 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=17.6
Q ss_pred cccccccccccCCCCceEecCCCchhhHHHH
Q 034125 22 AECAICLEKEYSDESAMIRMQCSHIFHADCI 52 (103)
Q Consensus 22 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl 52 (103)
..|+.|....|... .+. .-|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~E-k~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTE-KVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGG-CCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecce-eEE--ECCeEecccCC
Confidence 47999998444443 222 35777887773
No 171
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.51 E-value=11 Score=19.32 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=26.2
Q ss_pred ccccccccccccCCC-CceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDE-SAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
...|+.|-. .+... ..+. .-+..||..| +.|-.|+..+...
T Consensus 5 ~~~C~~C~~-~I~~~~~~~~--a~~~~~H~~C------------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKK-TIMPGTRKME--YKGSSWHETC------------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCC-CCCSSSCEEE--ETTEEEETTT------------TCCSSSCCCCCSS
T ss_pred CCCCccCCC-cccCCceEEE--ECcCeecccC------------CcccccCCccCCC
Confidence 357888888 43332 2333 3567788777 5788888877543
No 172
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.51 E-value=22 Score=18.14 Aligned_cols=39 Identities=23% Similarity=0.536 Sum_probs=25.8
Q ss_pred ccccccccccccCC---CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSD---ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 21 ~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
...|..|-. .+.. ...+. .-+..||..| +.|-.|+..+.
T Consensus 5 ~~~C~~C~~-~I~~~~~~~~~~--a~~~~wH~~C------------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTN-PISGLGGTKYIS--FEERQWHNDC------------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTB-CCCCSSSCSCEE--CSSCEECTTT------------CBCSSSCCBCT
T ss_pred CCCCcCCCc-cccCCCCcceEE--ECCcccCccc------------CEeccCCCcCC
Confidence 457888888 4332 13333 3577788777 67888988775
No 173
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.92 E-value=12 Score=19.10 Aligned_cols=40 Identities=18% Similarity=0.418 Sum_probs=26.0
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
...|..|-. .+. +..+. .-+..||..| +.|-.|+..+...
T Consensus 5 ~~~C~~C~~-~I~-~~~~~--a~~~~~H~~C------------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGE-FII-GRVIK--AMNNSWHPEC------------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCC-BCC-SCCEE--ETTEEECTTT------------SBCSSSCCBCSSS
T ss_pred CCcCccCCC-Eec-ceEEE--ECcccccccC------------CEeCCCCCcCCCC
Confidence 457888888 333 33333 3566788777 5788888777543
No 174
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.73 E-value=16 Score=18.52 Aligned_cols=39 Identities=18% Similarity=0.522 Sum_probs=25.3
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
...|..|-. .+. +..+. .-+..||..| +.|-.|+..+..
T Consensus 5 ~~~C~~C~~-~I~-~~~~~--a~~~~~H~~C------------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKK-PIT-TGGVT--YREQPWHKEC------------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCC-BCC-SSEEE--SSSSEEETTT------------SBCSSSCCBCTT
T ss_pred CCCCcccCC-eec-cceEE--ECccccCCCC------------CccCCCCCcCCc
Confidence 356888888 333 33332 4577788777 578888887753
No 175
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=47.71 E-value=10 Score=21.93 Aligned_cols=24 Identities=13% Similarity=0.457 Sum_probs=19.1
Q ss_pred ccccccccccccCCCCceEecCCCchhh
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFH 48 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~ 48 (103)
...|..|.. .+.....|.|||++|
T Consensus 24 ~~~C~~C~~----~~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGT----IQENWVCLSCYQVYC 47 (109)
T ss_dssp TCCCTTTCC----CSSEEEETTTCCEEE
T ss_pred CCcCccccC----CCCeeeeeecCcccc
Confidence 457999988 455677889999987
No 176
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=46.81 E-value=7.6 Score=20.28 Aligned_cols=50 Identities=18% Similarity=0.436 Sum_probs=27.5
Q ss_pred CCccccccccccccCCCCceEec--CCCchhhHHHHHHHHHhc----CCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRM--QCSHIFHADCITPWLEER----LGKSCACPVCP 70 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Cl~~~~~~~----~~~~~~CP~Cr 70 (103)
++...| ||-. ....+..+..= .|...||..|+.---... ......||.||
T Consensus 8 e~~v~C-~C~~-~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 8 EAKVRC-ICSS-TMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp SCEECC-TTCC-CSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred CCCEEe-ECCC-CcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 444556 7966 33344444432 388899999974211111 01247788885
No 177
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.81 E-value=17 Score=18.43 Aligned_cols=38 Identities=21% Similarity=0.605 Sum_probs=25.1
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
...|+.|-. .+. +..+. .-+..||..| +.|..|+..+.
T Consensus 5 ~~~C~~C~~-~I~-~~~~~--a~~~~~H~~C------------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNK-AIT-SGGIT--YQDQPWHADC------------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCC-CCC-TTCEE--ETTEEECTTT------------TBCTTTCCBCT
T ss_pred cCCCcccCC-EeC-cceEE--ECccccccCc------------CEECCCCCCCC
Confidence 457888888 333 33333 3567788777 57888888775
No 178
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.19 E-value=14 Score=19.39 Aligned_cols=38 Identities=24% Similarity=0.637 Sum_probs=26.5
Q ss_pred cccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 22 AECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 22 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
..|+.|.. .+. +..+. .-+..||..| +.|-.|+..+..
T Consensus 16 ~~C~~C~~-~I~-~~~v~--a~~~~wH~~C------------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQ-FIE-GEVVS--ALGKTYHPDC------------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCC-BCC-SCCEE--ETTEEECTTT------------SSCSSSCCCCCS
T ss_pred CcCccccC-Eec-cceEE--ECCceeCccC------------CccccCCCCCCC
Confidence 47899988 433 44333 3577788877 679999887753
No 179
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.15 E-value=28 Score=18.18 Aligned_cols=38 Identities=21% Similarity=0.470 Sum_probs=25.3
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
...|+.|-. .+. +..+. .-+..||..| +.|-.|...+.
T Consensus 15 ~~~C~~C~~-~I~-~~~~~--a~~~~~H~~C------------F~C~~C~~~L~ 52 (81)
T 1x6a_A 15 GEFCHGCSL-LMT-GPFMV--AGEFKYHPEC------------FACMSCKVIIE 52 (81)
T ss_dssp SCBCTTTCC-BCC-SCCBC--CTTCCBCTTS------------CBCTTTCCBCC
T ss_pred CCcCccCCC-CcC-ceEEE--ECCceecccc------------CCccCCCCccC
Confidence 347888888 433 33333 3567788777 67888988775
No 180
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.65 E-value=16 Score=18.95 Aligned_cols=37 Identities=16% Similarity=0.469 Sum_probs=23.6
Q ss_pred cccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 22 AECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 22 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
..|+-|-. .+. +..+. .-+..||..| +.|-.|...+.
T Consensus 6 ~~C~~C~~-~I~-~~~v~--a~~~~wH~~C------------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEK-YIT-GRVLE--AGEKHYHPSC------------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCC-CCS-SCCBC--CSSCCBCTTT------------SCCSSSCCCCC
T ss_pred CCcccCCC-Eec-CeeEE--eCCCCCCCCc------------CEeCCCCCCCC
Confidence 46888877 332 23322 4567788777 57888877765
No 181
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.79 E-value=16 Score=18.93 Aligned_cols=40 Identities=18% Similarity=0.471 Sum_probs=26.3
Q ss_pred ccccccccccccCC---CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSD---ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 21 ~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
...|+.|-. .+.. ...+. .-+..||..| +.|-.|+..+..
T Consensus 5 ~~~C~~C~~-~I~~~g~~~~~~--a~~~~wH~~C------------F~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSK-PISGLTGAKFIC--FQDSQWHSEC------------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCC-CCCTTTTCCEEE--ETTEEEEGGG------------CBCTTTCCBCSS
T ss_pred CCCCccCCC-cccCCCCceeEE--ECCcccCccc------------CChhhCCCcCCC
Confidence 357888888 3332 13333 3577788888 678999887753
No 182
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=41.23 E-value=5.1 Score=21.27 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=25.3
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
...|..|-. .+.....+. .-+..||..| +.|-.|...+...
T Consensus 7 ~~~C~~C~~-~I~~~~~~~--a~~~~~H~~C------------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGR-TVYHAEEVQ--CDGRSFHRCC------------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCC-BCSSTTEEE--ETTEEEESSS------------EECSSSCCEECSS
T ss_pred CCcCcCcCc-cccCceeEE--eCCccccccc------------CccCCCCCCCCCC
Confidence 457888888 443344333 3566778777 5688887766543
No 183
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=40.82 E-value=27 Score=19.05 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=22.1
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
-+.|..|.. .+....... .=+..||..|..+. -...|..|...|.
T Consensus 33 CF~C~~C~~-~L~~~~~~~--~~g~~yC~~cy~~~------~~~~C~~C~~~I~ 77 (101)
T 2cup_A 33 CFRCAKCLH-PLANETFVA--KDNKILCNKCTTRE------DSPKCKGCFKAIV 77 (101)
T ss_dssp TCCCSSSCC-CTTSSCCEE--ETTEEECHHHHTTC------CCCBCSSSCCBCC
T ss_pred CCcccccCC-CCCcCeeEC--cCCEEEChhHhhhh------cCCccccCCCccc
Confidence 355666666 332221111 23455666665321 1256777877665
No 184
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=40.18 E-value=1.1 Score=24.55 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=12.4
Q ss_pred CCCchhhHHHHHHHH
Q 034125 42 QCSHIFHADCITPWL 56 (103)
Q Consensus 42 ~C~H~f~~~Cl~~~~ 56 (103)
.|++.||..|...|-
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 589999999987663
No 185
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=39.90 E-value=25 Score=18.57 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=28.9
Q ss_pred ccccccccccC-CCCceEecCCCchhhHHHHHHHHHhc-CCCCCCCCCCCC
Q 034125 23 ECAICLEKEYS-DESAMIRMQCSHIFHADCITPWLEER-LGKSCACPVCPF 71 (103)
Q Consensus 23 ~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~~~~~~~-~~~~~~CP~Cr~ 71 (103)
.-.||.. .+. ....+..-.|.-.||..|+.--.... ......||.|+.
T Consensus 11 ~yCiC~~-~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 11 VYCVCRL-PYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp EETTTTE-ECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred eEEECCC-cCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 3448887 333 33445555689999999995422111 113478999964
No 186
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.61 E-value=27 Score=18.14 Aligned_cols=39 Identities=18% Similarity=0.520 Sum_probs=25.7
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
...|+.|-. .+. +..+. .-+..||..| +.|-.|+..+..
T Consensus 15 ~~~C~~C~~-~I~-~~~v~--a~~~~~H~~C------------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSK-TLT-QGGVT--YRDQPWHREC------------LVCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCC-CCC-SCCEE--SSSSEECTTT------------CBCSSSCCBCTT
T ss_pred CCcCCCCCC-Eec-CcEEE--ECCchhhhhh------------CCcccCCCcCCC
Confidence 357888888 333 33333 4577788777 678889887753
No 187
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=39.19 E-value=27 Score=20.82 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=18.5
Q ss_pred CccccccccccccCCCCceEecCCCchhh
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHIFH 48 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~ 48 (103)
....|..|.. .......|.|||+.|
T Consensus 33 ~~~~C~~C~~----~~~LwlCL~CG~vgC 57 (129)
T 2g45_A 33 CGWKCSKCDM----RENLWLNLTDGSILC 57 (129)
T ss_dssp CBCCCSSSSC----CSSEEEETTTCCEEE
T ss_pred CCCcCccccC----cCceEEeccCCcccc
Confidence 4557999988 356678888999744
No 188
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.93 E-value=42 Score=17.42 Aligned_cols=42 Identities=17% Similarity=0.460 Sum_probs=27.4
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
...|+.|-. .+.....+. ..-+..||..| +.|-.|+..+...
T Consensus 15 ~~~C~~C~~-~I~~~~~~~-~a~~~~~H~~C------------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFK-AIVAGDQNV-EYKGTVWHKDC------------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCC-BCCSSSCEE-ECSSCEEETTT------------CCCSSSCCCCTTS
T ss_pred CCcCccCCc-ccccCceEE-EECcccccccc------------CchhhCCCccCCC
Confidence 457999988 444323222 13577788877 6799998877543
No 189
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.87 E-value=21 Score=18.72 Aligned_cols=41 Identities=20% Similarity=0.471 Sum_probs=27.1
Q ss_pred CccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
....|+.|-. .+. +..+. .-+..||..| +.|..|...+...
T Consensus 14 ~~~~C~~C~~-~I~-~~~~~--a~~~~~H~~C------------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 14 TLEKCATCSQ-PIL-DRILR--AMGKAYHPGC------------FTCVVCHRGLDGI 54 (81)
T ss_dssp SCCBCTTTCC-BCC-SCCEE--ETTEEECTTT------------CBCSSSCCBCTTS
T ss_pred CCCccccCCC-eec-ceeEE--ECCccccHHh------------cCcccCCCccCCC
Confidence 4467888888 433 33333 3567788777 6799998877533
No 190
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=37.79 E-value=17 Score=20.99 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=22.5
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhc
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEER 59 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~ 59 (103)
.+-+.|..|.. .+..+.... ..=+..||..|....+..+
T Consensus 34 ~~CF~C~~C~~-~L~~g~~f~-~~~g~~yC~~cy~~~~~~~ 72 (123)
T 2l3k_A 34 LECFKCAACQK-HFSVGDRYL-LINSDIVCEQDIYEWTKIN 72 (123)
T ss_dssp TTTCBCTTTCC-BCCTTCEEE-ECSSSEEEGGGHHHHHHHH
T ss_pred cccCccccCCC-CCCCCCcEE-eeCCEEEcHHHhHHHhccc
Confidence 45567777777 432333222 2346677778877766554
No 191
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.06 E-value=28 Score=19.95 Aligned_cols=51 Identities=10% Similarity=0.060 Sum_probs=29.2
Q ss_pred ccccccccccccCC-CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSD-ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLPS 77 (103)
Q Consensus 21 ~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~~ 77 (103)
-+.|..|.. .+.. +.... ..=+..||..|....+..+ ..|-.|...|....
T Consensus 32 CF~C~~C~~-~L~~~~~~~~-~~~g~~yC~~cy~~~f~~~----~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQA-QLGDIGTSSY-TKSGMILCRNDYIRLFGNS----GAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCC-CTTTSEECCE-EETTEEECHHHHHHHHCCC----CSSSCSSCCSCCEE
T ss_pred CCCcCCCCC-cccccCCeEE-EECCeeecHHHHHHHcCCC----CccccCCCCcCchh
Confidence 356777776 3321 11111 1345678888876654432 37999988887543
No 192
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=36.31 E-value=47 Score=18.18 Aligned_cols=34 Identities=18% Similarity=0.472 Sum_probs=23.0
Q ss_pred CCccccccccccccCCCCceEec--CCCchhhHHHHHH
Q 034125 19 DEEAECAICLEKEYSDESAMIRM--QCSHIFHADCITP 54 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Cl~~ 54 (103)
...+.|.||.. . ..+..+..- .|.-.||..|...
T Consensus 15 R~~l~C~iC~~-~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 15 RWKLTCYLCKQ-K-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCCBTTTTB-C-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred HhcCCCcCCCC-C-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 45789999986 1 124334433 3888999999865
No 193
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.22 E-value=28 Score=18.20 Aligned_cols=40 Identities=20% Similarity=0.457 Sum_probs=25.4
Q ss_pred ccccccccccccCC-CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSD-ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 21 ~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
...|..|-. .+.. +..+. .-+..||..| +.|-.|...+..
T Consensus 15 ~~~C~~C~~-~I~~~~~~~~--a~~~~~H~~C------------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQ-LIGHDSRELF--YEDRHFHEGC------------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCC-BCCSSCCBCC--CSSCCCBTTT------------SBCTTTCCBCSS
T ss_pred CCcCccCCC-ccccCcEEEE--eCCccccccC------------CeecCCCCccCC
Confidence 347888888 4332 22222 2467788777 678899887754
No 194
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=35.90 E-value=35 Score=20.95 Aligned_cols=11 Identities=27% Similarity=1.011 Sum_probs=7.0
Q ss_pred CCCCCCCCCCC
Q 034125 64 CACPVCPFQMP 74 (103)
Q Consensus 64 ~~CP~Cr~~~~ 74 (103)
..|..|...+.
T Consensus 120 ~kC~~C~~~I~ 130 (182)
T 2jtn_A 120 TKCAACQLGIP 130 (182)
T ss_dssp CCCTTTCCCCC
T ss_pred cccccCCCccC
Confidence 45777766664
No 195
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.56 E-value=26 Score=18.22 Aligned_cols=39 Identities=18% Similarity=0.485 Sum_probs=25.6
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
...|+.|-. .+. +..+. .-+..||..| +.|-.|+..+..
T Consensus 15 ~~~C~~C~~-~I~-~~~v~--a~~~~~H~~C------------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNR-PVL-ENYLS--AMDTVWHPEC------------FVCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCC-BCC-SSCEE--ETTEEECTTT------------CBCSSSCCBSCS
T ss_pred CCccccCCC-eec-ceeEE--ECCCeEecCc------------CChhhCCCCCCC
Confidence 357888888 333 33333 3566788777 678999887754
No 196
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.15 E-value=24 Score=18.70 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=19.0
Q ss_pred CCCCCCCccccccccccccCCCC--ceEecCCCchhhH
Q 034125 14 RSNHTDEEAECAICLEKEYSDES--AMIRMQCSHIFHA 49 (103)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~~~~--~~~~~~C~H~f~~ 49 (103)
..........|..|.. ...... .... .|+..||.
T Consensus 8 ~~~~~~~~~rC~~C~k-k~gL~~~egf~C-rCg~~FC~ 43 (67)
T 1x4w_A 8 SRSKQKSRRRCFQCQT-KLELVQQELGSC-RCGYVFCM 43 (67)
T ss_dssp CCCSCSCTTBCSSSCC-BCCHHHHHHHCC-SSSCCCCT
T ss_pred CccCCccCCcchhhCC-eecccccCceEe-cCCCEehh
Confidence 3344455678999988 322110 0222 58888874
No 197
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=32.08 E-value=29 Score=17.35 Aligned_cols=42 Identities=21% Similarity=0.635 Sum_probs=26.8
Q ss_pred CccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
....|..|.. .+.....+.. .-+..||..| +.|-.|...+..
T Consensus 10 ~~~~C~~C~~-~i~~~e~~~~-~~~~~~H~~C------------F~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKG-GFAPAEKIVN-SNGELYHEQC------------FVCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCC-BCCTTCEEEE-ETTEEEETTT------------SSCTTTCCCCGG
T ss_pred CCccchhcCc-cccCCceEEE-eCcCeeCcCC------------CcccCCCCCCCC
Confidence 3457999988 4443332221 3566788777 578889877643
No 198
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=31.09 E-value=28 Score=19.48 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=18.8
Q ss_pred ccccccccccccCCCCceEecC--CCchhhH
Q 034125 21 EAECAICLEKEYSDESAMIRMQ--CSHIFHA 49 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~--C~H~f~~ 49 (103)
...|..|.. . .......|. |||++|.
T Consensus 25 ~~~C~~C~~-~--~~~lw~CL~~~Cg~vgCg 52 (97)
T 2uzg_A 25 LGTCQDCKV-Q--GPNLWACLENRCSYVGCG 52 (97)
T ss_dssp TTCCSSSCC-C--CSSCEEECCTTCCCEECC
T ss_pred CCcCcCcCC-C--CCCceeeecccCCCcccC
Confidence 457999985 1 344578888 9999873
No 199
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.82 E-value=27 Score=19.74 Aligned_cols=37 Identities=5% Similarity=0.092 Sum_probs=18.5
Q ss_pred CCccccccccccccCC-CCceEecCCCchhhHHHHHHHHH
Q 034125 19 DEEAECAICLEKEYSD-ESAMIRMQCSHIFHADCITPWLE 57 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Cl~~~~~ 57 (103)
.+-+.|..|.. .+.. +.... ..=+..||..|..+.+.
T Consensus 28 ~~CF~C~~C~~-~L~~~g~~~~-~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 28 EDCLSCDLCGC-RLGEVGRRLY-YKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTTCCCSSSCS-CCCCSSSCCC-CBTTBCCCHHHHHHHHT
T ss_pred HhcCcccccCC-chhcCCCeeE-EECCeeechHHHHHHhC
Confidence 34566777766 3332 11111 12355677777665444
No 200
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=30.60 E-value=48 Score=18.80 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=19.6
Q ss_pred CCCchhhHHHHH------HHHHhc-CCCCCCCCCCCCC
Q 034125 42 QCSHIFHADCIT------PWLEER-LGKSCACPVCPFQ 72 (103)
Q Consensus 42 ~C~H~f~~~Cl~------~~~~~~-~~~~~~CP~Cr~~ 72 (103)
.|...||..|+. ..+... ......||.|...
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 489999999952 122221 1235789999643
No 201
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.23 E-value=46 Score=16.61 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=13.2
Q ss_pred CccCCCCCCCCCCCccccccccc
Q 034125 7 GACGEGQRSNHTDEEAECAICLE 29 (103)
Q Consensus 7 ~~~~~~~~~~~~~~~~~C~IC~~ 29 (103)
|+.+.............|.+|-.
T Consensus 4 g~~~~~~~~~~~~~~~~C~~C~~ 26 (77)
T 2cot_A 4 GSSGRSEWQQRERRRYKCDECGK 26 (77)
T ss_dssp CCCCCCCSCCCCSCSSBCSSSCC
T ss_pred CCCCCCcCcCCCCCCEECCCCCc
Confidence 33333333344456678888877
No 202
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.04 E-value=31 Score=17.75 Aligned_cols=40 Identities=20% Similarity=0.482 Sum_probs=26.3
Q ss_pred ccccccccccccCC----CCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSD----ESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 21 ~~~C~IC~~~~~~~----~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
...|+.|-. .+.. ...+. .-+..||..| +.|-.|+..+..
T Consensus 15 ~~~C~~C~~-~I~~~g~~~~~~~--a~~~~~H~~C------------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKN-PITGFGKGSSVVA--YEGQSWHDYC------------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCC-CCCCCSSCCCEEE--ETTEEEETTT------------CBCSSSCCBCTT
T ss_pred CccCcccCC-cccCCCCCceeEE--ECcceeCccc------------CEehhcCCCCCC
Confidence 457888888 3332 13333 3567788877 679999887753
No 203
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.96 E-value=40 Score=16.66 Aligned_cols=12 Identities=17% Similarity=0.606 Sum_probs=9.2
Q ss_pred CCCccccccccc
Q 034125 18 TDEEAECAICLE 29 (103)
Q Consensus 18 ~~~~~~C~IC~~ 29 (103)
..++..||+|-.
T Consensus 33 lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 33 LPDDWACPVCGA 44 (52)
T ss_dssp SCTTCCCSSSCC
T ss_pred CCCCCcCCCCCC
Confidence 356678999987
No 204
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=29.56 E-value=47 Score=25.71 Aligned_cols=58 Identities=17% Similarity=0.364 Sum_probs=36.9
Q ss_pred CCCCCCccccccccccccCCCC-------ceEecCCCch--------------------hhHHHHHHHHHhc----CCCC
Q 034125 15 SNHTDEEAECAICLEKEYSDES-------AMIRMQCSHI--------------------FHADCITPWLEER----LGKS 63 (103)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~~~~-------~~~~~~C~H~--------------------f~~~Cl~~~~~~~----~~~~ 63 (103)
.....+-..|+=|+. ++..+. .+.+..||.. +|..|...+-.-. .-+.
T Consensus 105 ~~i~pD~a~C~~Cl~-e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp 183 (761)
T 3vth_A 105 VPVSPDMGVCEDCLR-ELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQP 183 (761)
T ss_dssp CCCCCCBCCCHHHHH-HHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTT
T ss_pred cccCCCccccHHHHH-HhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCC
Confidence 345577789999998 655432 2444557654 4888998876432 1245
Q ss_pred CCCCCCCCCC
Q 034125 64 CACPVCPFQM 73 (103)
Q Consensus 64 ~~CP~Cr~~~ 73 (103)
..||.|.=.+
T Consensus 184 ~aC~~CGP~l 193 (761)
T 3vth_A 184 VACFDCGPSL 193 (761)
T ss_dssp CCCTTTSCCE
T ss_pred CcCCccCCee
Confidence 7899995433
No 205
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=29.37 E-value=2.6 Score=23.22 Aligned_cols=18 Identities=28% Similarity=0.693 Sum_probs=13.1
Q ss_pred eEecCCCchhhHHHHHHH
Q 034125 38 MIRMQCSHIFHADCITPW 55 (103)
Q Consensus 38 ~~~~~C~H~f~~~Cl~~~ 55 (103)
+....|++.||..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 333349999998888776
No 206
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.47 E-value=1.4 Score=30.38 Aligned_cols=48 Identities=15% Similarity=0.319 Sum_probs=27.5
Q ss_pred CCccccccccccccCCCCceEe--cCCC--chhhHHHHHHHHHhcCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIR--MQCS--HIFHADCITPWLEERLGKSCACPVCPFQ 72 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~--~~C~--H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~ 72 (103)
+....||||-. ..... .+.. -.=| +.+|..|-..|--.+ ..||.|...
T Consensus 180 ~~~~~CPvCGs-~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R----~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGS-PPMAG-MIRQGGKETGLRYLSCSLCACEWHYVR----IKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCC-CEEEE-EEEC----CCEEEEEETTTCCEEECCT----TSCSSSCCC
T ss_pred ccCCCCCCCCC-cCcee-EEeecCCCCCcEEEEeCCCCCEEeecC----cCCcCCCCC
Confidence 67789999988 32111 1110 0112 345556666675555 789999654
No 207
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.46 E-value=13 Score=19.72 Aligned_cols=11 Identities=36% Similarity=0.932 Sum_probs=8.4
Q ss_pred CCCCCCCCCCC
Q 034125 64 CACPVCPFQMP 74 (103)
Q Consensus 64 ~~CP~Cr~~~~ 74 (103)
..||.|+..+.
T Consensus 9 L~CP~ck~~L~ 19 (69)
T 2pk7_A 9 LACPICKGPLK 19 (69)
T ss_dssp CCCTTTCCCCE
T ss_pred eeCCCCCCcCe
Confidence 67888887764
No 208
>1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} SCOP: j.40.1.1 PDB: 1tvt_A
Probab=27.66 E-value=42 Score=18.02 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=13.5
Q ss_pred cccCcCccCCCCCCCCCCCccccccccc
Q 034125 2 RELSRGACGEGQRSNHTDEEAECAICLE 29 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~C~IC~~ 29 (103)
+..++|+.+.........--+.|.+|+.
T Consensus 15 q~ssgg~pg~ntg~q~~rccyHCqvCF~ 42 (75)
T 1tvs_A 15 QKSSGGVPGQNTGGQEARPNYHCQLCFL 42 (75)
T ss_dssp TCCCCCCCCCCCSSSSSCCCSSSHHHHH
T ss_pred hhccCCCCCccCCcccccceeeehhhhc
Confidence 3444444444444444444555556655
No 209
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=27.43 E-value=45 Score=18.26 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=8.6
Q ss_pred CCCccccccccc
Q 034125 18 TDEEAECAICLE 29 (103)
Q Consensus 18 ~~~~~~C~IC~~ 29 (103)
..++..||+|-.
T Consensus 57 lPddW~CPvCga 68 (81)
T 2kn9_A 57 IPDDWSCPDCGA 68 (81)
T ss_dssp SCTTCCCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 345668999876
No 210
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.34 E-value=79 Score=16.99 Aligned_cols=28 Identities=14% Similarity=0.402 Sum_probs=17.7
Q ss_pred CCccccccccccccCCCCceEecCCCchhhH
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHA 49 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~ 49 (103)
.....|..|.. .+... .... .|+..||.
T Consensus 23 ~~~~RC~~C~k-kvgL~-~f~C-rCg~~FCs 50 (74)
T 1wfp_A 23 STATRCLSCNK-KVGVT-GFKC-RCGSTFCG 50 (74)
T ss_dssp CCCCBCSSSCC-BCTTT-CEEC-TTSCEECT
T ss_pred ccCccchhhcC-ccccc-ceEe-ccCCEecc
Confidence 45678999987 32222 2333 69999985
No 211
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=27.28 E-value=46 Score=20.13 Aligned_cols=48 Identities=13% Similarity=0.385 Sum_probs=30.6
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
.+-+.|..|.. .+.... .. .=+..||..|....+. ..|..|...|...
T Consensus 31 ~~CF~C~~C~~-~L~~~~-f~--~~g~~yC~~~y~~~f~------~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHV-PLAERC-FS--RGESVYCKDDFFKRFG------TKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCC-BCCSCC-EE--SSSCEECHHHHHHHHS------CBCTTTCCBCCTT
T ss_pred cccCccCCCCC-cCCCCC-cc--cCCeeeeccccccccc------ccccccccccCCC
Confidence 45677888877 443322 22 3567788888765433 5699998877643
No 212
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.07 E-value=1.9 Score=24.79 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=21.8
Q ss_pred ccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034125 21 EAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQM 73 (103)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~ 73 (103)
+..||+|.. .+... =++.+|..|-..+.. . ..||-|..++
T Consensus 32 ~~~CP~Cq~-eL~~~-------g~~~hC~~C~~~f~~-~----a~CPdC~q~L 71 (101)
T 2jne_A 32 ELHCPQCQH-VLDQD-------NGHARCRSCGEFIEM-K----ALCPDCHQPL 71 (101)
T ss_dssp CCBCSSSCS-BEEEE-------TTEEEETTTCCEEEE-E----EECTTTCSBC
T ss_pred cccCccCCC-cceec-------CCEEECccccchhhc-c----ccCcchhhHH
Confidence 479999998 33221 122234444332222 2 5799998766
No 213
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=26.59 E-value=34 Score=17.06 Aligned_cols=40 Identities=15% Similarity=0.375 Sum_probs=26.6
Q ss_pred cccccccccccCC-CCceEecCCCchhh--HHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 034125 22 AECAICLEKEYSD-ESAMIRMQCSHIFH--ADCITPWLEERLGKSCACPVCPFQMPLP 76 (103)
Q Consensus 22 ~~C~IC~~~~~~~-~~~~~~~~C~H~f~--~~Cl~~~~~~~~~~~~~CP~Cr~~~~~~ 76 (103)
..|+-|-. .+.. +..+. .-+..|| ..| +.|-.|+.++...
T Consensus 3 ~~C~~C~~-~I~~~~~~v~--a~~~~wH~~~~C------------F~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHN-AIDPEVQRVT--YNNFSWHASTEC------------FLCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSS-EECTTSCEEE--ETTEEEETTTTT------------SBCTTTCCBCTTS
T ss_pred CCCcCCCC-eeccCceEEE--ECCCccCCCCCC------------EECCCCCCcCCCC
Confidence 46888888 4443 33333 3577888 878 6799998887533
No 214
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=26.53 E-value=49 Score=25.21 Aligned_cols=58 Identities=19% Similarity=0.440 Sum_probs=35.9
Q ss_pred CCCCCCccccccccccccCCCC-------ceEecCCCch--------------------hhHHHHHHHHHhc----CCCC
Q 034125 15 SNHTDEEAECAICLEKEYSDES-------AMIRMQCSHI--------------------FHADCITPWLEER----LGKS 63 (103)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~~~~-------~~~~~~C~H~--------------------f~~~Cl~~~~~~~----~~~~ 63 (103)
.....+...|+=|+. ++..+. .+.+..||.. +|..|...+-.-. .-+.
T Consensus 11 ~~i~pD~a~C~~Cl~-e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp 89 (657)
T 3ttc_A 11 TQIVPDAATCPACLA-EMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQP 89 (657)
T ss_dssp -CCCCCBCCCHHHHH-HHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTT
T ss_pred cccCCchhhhHHHHH-HhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCC
Confidence 445678889999998 654322 1333445543 4788988876432 1255
Q ss_pred CCCCCCCCCC
Q 034125 64 CACPVCPFQM 73 (103)
Q Consensus 64 ~~CP~Cr~~~ 73 (103)
..||.|-=.+
T Consensus 90 ~aCp~CGP~l 99 (657)
T 3ttc_A 90 VACPECGPYL 99 (657)
T ss_dssp CCCTTTSCCE
T ss_pred CcCcccCccc
Confidence 7899995433
No 215
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=25.40 E-value=13 Score=15.82 Aligned_cols=13 Identities=46% Similarity=1.050 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCC
Q 034125 64 CACPVCPFQMPLP 76 (103)
Q Consensus 64 ~~CP~Cr~~~~~~ 76 (103)
..||+|...++..
T Consensus 7 vqcpvcqq~mpaa 19 (29)
T 3vhs_A 7 VQCPVCQQMMPAA 19 (29)
T ss_dssp EECTTTCCEEEGG
T ss_pred eeChHHHHhCcHH
Confidence 5799998766543
No 216
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=25.38 E-value=67 Score=24.89 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=35.6
Q ss_pred CCCCCccccccccccccCCCC-------ceEecCCCch--------------------hhHHHHHHHHHhc----CCCCC
Q 034125 16 NHTDEEAECAICLEKEYSDES-------AMIRMQCSHI--------------------FHADCITPWLEER----LGKSC 64 (103)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~-------~~~~~~C~H~--------------------f~~~Cl~~~~~~~----~~~~~ 64 (103)
....+-..|+=|+. ++..+. .+.+..||.. .|..|...+-.-. .-+..
T Consensus 101 ~i~pD~a~C~~Cl~-e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~ 179 (772)
T 4g9i_A 101 IIPPDIAICDDCLR-ELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPT 179 (772)
T ss_dssp CCCCCCCCCHHHHH-HHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTC
T ss_pred ccCCchhhhHHHHH-HhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCC
Confidence 34577789999998 654432 2334456654 4888988876332 12457
Q ss_pred CCCCCCCC
Q 034125 65 ACPVCPFQ 72 (103)
Q Consensus 65 ~CP~Cr~~ 72 (103)
.||.|-=.
T Consensus 180 aC~~CGP~ 187 (772)
T 4g9i_A 180 ACPVCGPS 187 (772)
T ss_dssp CCTTTSCC
T ss_pred CCccCCce
Confidence 89999543
No 217
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.69 E-value=56 Score=16.52 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCC
Q 034125 63 SCACPVCPFQMPL 75 (103)
Q Consensus 63 ~~~CP~Cr~~~~~ 75 (103)
...||.|+..+..
T Consensus 6 ~k~CP~C~~~Iek 18 (60)
T 1wd2_A 6 TKECPKCHVTIEK 18 (60)
T ss_dssp CCCCTTTCCCCSS
T ss_pred ceECcCCCCeeEe
Confidence 4679998877754
No 218
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.44 E-value=18 Score=20.52 Aligned_cols=12 Identities=33% Similarity=0.874 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCC
Q 034125 63 SCACPVCPFQMP 74 (103)
Q Consensus 63 ~~~CP~Cr~~~~ 74 (103)
+..||+|...+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 367999988765
No 219
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=23.74 E-value=51 Score=24.07 Aligned_cols=45 Identities=20% Similarity=0.449 Sum_probs=28.2
Q ss_pred ccccccccC-CCCceEecCCCchhhHHHHHHHHHhc-CCCCCCCCCCC
Q 034125 25 AICLEKEYS-DESAMIRMQCSHIFHADCITPWLEER-LGKSCACPVCP 70 (103)
Q Consensus 25 ~IC~~~~~~-~~~~~~~~~C~H~f~~~Cl~~~~~~~-~~~~~~CP~Cr 70 (103)
.||.. .+. .+..+.+-.|...||..|+.---... ......||.|+
T Consensus 40 C~C~~-~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~ 86 (488)
T 3kv5_D 40 CVCRQ-PYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCA 86 (488)
T ss_dssp TTTTE-ECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHH
T ss_pred EeCCC-cCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCc
Confidence 48988 332 34455555699999999995422211 11347899996
No 220
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.64 E-value=30 Score=18.16 Aligned_cols=11 Identities=27% Similarity=0.334 Sum_probs=9.2
Q ss_pred CCCCCCCCCCC
Q 034125 64 CACPVCPFQMP 74 (103)
Q Consensus 64 ~~CP~Cr~~~~ 74 (103)
..||.|+.++.
T Consensus 11 L~CP~ck~~L~ 21 (67)
T 2jny_A 11 LACPKDKGPLR 21 (67)
T ss_dssp CBCTTTCCBCE
T ss_pred hCCCCCCCcCe
Confidence 68999998764
No 221
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.55 E-value=56 Score=17.47 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCCC
Q 034125 62 KSCACPVCPFQMPL 75 (103)
Q Consensus 62 ~~~~CP~Cr~~~~~ 75 (103)
....|+.|...+..
T Consensus 55 k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 55 QVFPCKYCPATFYS 68 (85)
T ss_dssp SSEECTTSSCEESS
T ss_pred CccCCCCCCCEeCC
Confidence 44789999876643
No 222
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=23.53 E-value=50 Score=25.46 Aligned_cols=37 Identities=22% Similarity=0.642 Sum_probs=25.2
Q ss_pred ccccccccccccCC-------CCceEecCCCchhhHHHHHHHHHh
Q 034125 21 EAECAICLEKEYSD-------ESAMIRMQCSHIFHADCITPWLEE 58 (103)
Q Consensus 21 ~~~C~IC~~~~~~~-------~~~~~~~~C~H~f~~~Cl~~~~~~ 58 (103)
..+||+|+- .... .....-+.|+-.||..|+..+.+.
T Consensus 13 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 13 TATCPVCFA-SASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CCSSCCBSC-CCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred cccccHHHH-HHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 347888887 4321 122455689988999999977654
No 223
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=23.38 E-value=43 Score=16.79 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=9.0
Q ss_pred CCCccccccccc
Q 034125 18 TDEEAECAICLE 29 (103)
Q Consensus 18 ~~~~~~C~IC~~ 29 (103)
..++..||+|-.
T Consensus 33 lP~dw~CP~Cga 44 (55)
T 2v3b_B 33 IPADWVCPDCGV 44 (55)
T ss_dssp SCTTCCCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 355668999986
No 224
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.82 E-value=47 Score=18.88 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=29.0
Q ss_pred CCccccccccccccCCCCceEecCCCchhhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 034125 19 DEEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEERLGKSCACPVCPFQMPL 75 (103)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~~ 75 (103)
.+-+.|..|.. .+... ... ..=+..||..|..+.. . ..|..|...|..
T Consensus 28 ~~CF~C~~C~~-~L~~~-~f~-~~~g~~yC~~cy~~~~--~----~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDS-ILAGE-IYV-MVNDKPVCKPCYVKNH--A----VVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCC-BCTTS-EEE-EETTEEEEHHHHHHHS--C----CBCTTTCSBCCT
T ss_pred CCCCCcCCCCC-CCCcC-EEE-eECCEEechHHhCcCc--C----ccCcccCCcCCc
Confidence 34567888877 43322 211 2356678888875532 2 569999888764
No 225
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=22.72 E-value=42 Score=20.77 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=5.6
Q ss_pred CchhhHHHHHH
Q 034125 44 SHIFHADCITP 54 (103)
Q Consensus 44 ~H~f~~~Cl~~ 54 (103)
+..||..|..+
T Consensus 54 g~~yC~~cy~~ 64 (192)
T 1b8t_A 54 DEIYCKSCYGK 64 (192)
T ss_dssp TEEEEHHHHHH
T ss_pred CEeeChhhhHh
Confidence 44455555544
No 226
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=22.68 E-value=32 Score=18.07 Aligned_cols=11 Identities=27% Similarity=0.787 Sum_probs=8.9
Q ss_pred CCCCCCCCCCC
Q 034125 64 CACPVCPFQMP 74 (103)
Q Consensus 64 ~~CP~Cr~~~~ 74 (103)
..||.|+..+.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2hf1_A 9 LVCPLCKGPLV 19 (68)
T ss_dssp CBCTTTCCBCE
T ss_pred eECCCCCCcCe
Confidence 57999998764
No 227
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=22.57 E-value=77 Score=15.24 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=24.8
Q ss_pred CccccccccccccCCCCceEecCCCchhhHHHHHHHHHhc
Q 034125 20 EEAECAICLEKEYSDESAMIRMQCSHIFHADCITPWLEER 59 (103)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Cl~~~~~~~ 59 (103)
+...|..|.. . ..+..+.-+=|+..|-.|-..|....
T Consensus 3 ~~~~C~~C~t-t--~Tp~WR~gp~G~~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 3 EARECVNCGA-T--ATPLWRRDRTGHYLCNACGLYHKMNG 39 (46)
T ss_dssp CSCCCTTTCC-C--CCSSCBCCTTCCCBCSHHHHHHHHTC
T ss_pred CCCCCCCcCC-C--CCCcCccCCCCCccchHHHHHHHHcC
Confidence 4567888887 2 33444545667788889998776655
No 228
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.88 E-value=33 Score=18.05 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=9.1
Q ss_pred CCCCCCCCCCC
Q 034125 64 CACPVCPFQMP 74 (103)
Q Consensus 64 ~~CP~Cr~~~~ 74 (103)
..||.|+.++.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2jr6_A 9 LVCPVTKGRLE 19 (68)
T ss_dssp CBCSSSCCBCE
T ss_pred eECCCCCCcCe
Confidence 68999998764
No 229
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.74 E-value=42 Score=16.84 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=9.7
Q ss_pred CCCCccccccccc
Q 034125 17 HTDEEAECAICLE 29 (103)
Q Consensus 17 ~~~~~~~C~IC~~ 29 (103)
...++..||+|-.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 3456679999976
No 230
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=21.58 E-value=31 Score=15.30 Aligned_cols=9 Identities=44% Similarity=1.010 Sum_probs=7.2
Q ss_pred ccccccccc
Q 034125 21 EAECAICLE 29 (103)
Q Consensus 21 ~~~C~IC~~ 29 (103)
--+|++|+.
T Consensus 9 fhecalcys 17 (36)
T 2jyp_A 9 FHECALCYS 17 (36)
T ss_dssp TTCCSSSTT
T ss_pred cchheeEEe
Confidence 457999998
No 231
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.34 E-value=43 Score=16.56 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=9.4
Q ss_pred CCCCccccccccc
Q 034125 17 HTDEEAECAICLE 29 (103)
Q Consensus 17 ~~~~~~~C~IC~~ 29 (103)
...++..||+|-.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 3356678999976
No 232
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.18 E-value=95 Score=15.78 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=23.9
Q ss_pred cccccccccccCCCCceEecCCC-chhhHHHHHH
Q 034125 22 AECAICLEKEYSDESAMIRMQCS-HIFHADCITP 54 (103)
Q Consensus 22 ~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Cl~~ 54 (103)
..|..|.. ....+.....+.|. .-+|..|...
T Consensus 12 ~~Cd~C~~-~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 12 VECSYCHS-ESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SCCSSSCC-CSSCSCEEEESSCSSCEECHHHHHH
T ss_pred CCCcCCCC-cceecceEEecCCCCchhHHHHHhC
Confidence 78999998 54566667777785 4489999764
No 233
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=20.95 E-value=36 Score=21.06 Aligned_cols=20 Identities=20% Similarity=0.765 Sum_probs=11.9
Q ss_pred CCchhhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 034125 43 CSHIFHADCITPWLEERLGKSCACPVCPFQMP 74 (103)
Q Consensus 43 C~H~f~~~Cl~~~~~~~~~~~~~CP~Cr~~~~ 74 (103)
-++.||..| +.|-.|...+.
T Consensus 89 ~~~~~H~~C------------F~C~~C~~~L~ 108 (188)
T 1rut_X 89 QGNVYHLKC------------FTCSTCRNRLV 108 (188)
T ss_dssp TTEEECGGG------------CBCTTTCCBCC
T ss_pred CCCEEeCCC------------CeECCCCCCCC
Confidence 455666665 45666766553
No 234
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.79 E-value=49 Score=17.46 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=9.0
Q ss_pred CCCccccccccc
Q 034125 18 TDEEAECAICLE 29 (103)
Q Consensus 18 ~~~~~~C~IC~~ 29 (103)
..++..||+|-.
T Consensus 37 lPddw~CP~Cga 48 (70)
T 1dx8_A 37 LSDSFMCPACRS 48 (70)
T ss_dssp SCTTCBCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 345668999987
No 235
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.06 E-value=51 Score=12.16 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCCC
Q 034125 64 CACPVCPFQMPLPS 77 (103)
Q Consensus 64 ~~CP~Cr~~~~~~~ 77 (103)
..|+.|...+....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 3 HKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCSSCCCCCCTTT
T ss_pred CcCCCCCcccCCHH
Confidence 57999987775443
Done!