Query 034126
Match_columns 103
No_of_seqs 113 out of 1019
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:06:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8n_N 30S ribosomal protein S 100.0 3.5E-46 1.2E-50 247.6 2.5 99 5-103 1-100 (100)
2 3bbn_N Ribosomal protein S14; 100.0 1.9E-45 6.7E-50 244.1 -5.3 99 4-103 1-100 (100)
3 2vqe_N 30S ribosomal protein S 99.9 1.3E-27 4.5E-32 145.8 4.6 53 51-103 9-61 (61)
4 2xzm_N RPS29E; ribosome, trans 99.4 7.4E-14 2.5E-18 83.2 3.6 35 58-92 12-48 (55)
5 3j20_P 30S ribosomal protein S 99.2 9.1E-12 3.1E-16 74.3 3.3 35 58-92 13-49 (56)
6 3iz6_N 40S ribosomal protein S 99.2 8.5E-12 2.9E-16 74.5 1.8 39 52-92 9-49 (56)
7 3u5c_d S36, YS29, 40S ribosoma 99.1 2.2E-11 7.6E-16 72.6 2.6 38 53-92 10-49 (56)
8 4e17_B Catenin alpha-1; four h 48.2 14 0.00049 19.9 2.3 31 4-34 3-33 (40)
9 2rig_A Interferon-gamma; cytok 48.0 17 0.00058 24.8 3.3 68 9-76 72-144 (144)
10 2og0_A Excisionase; protein-DN 46.2 11 0.00039 21.1 1.9 20 80-99 15-36 (52)
11 3tuf_A Stage III sporulation p 44.3 35 0.0012 24.3 4.6 42 5-53 86-127 (197)
12 1z4h_A TORI, TOR inhibition pr 38.5 6.6 0.00023 22.4 0.0 25 73-97 14-38 (66)
13 1y6u_A XIS, excisionase from t 37.4 20 0.00067 21.1 2.0 21 76-96 23-44 (70)
14 2kfs_A Conserved hypothetical 34.3 23 0.00078 24.2 2.2 24 77-100 39-62 (148)
15 4e18_B Catenin alpha-1; four h 30.2 47 0.0016 19.3 2.8 31 3-33 21-51 (59)
16 1pm6_A Excisionase; antiparall 29.5 26 0.00088 20.9 1.6 20 80-99 15-36 (72)
17 1j9i_A GPNU1 DBD;, terminase s 25.2 41 0.0014 18.8 2.0 25 75-100 8-32 (68)
18 1bw3_A Barwin, basic barley SE 24.3 7.1 0.00024 26.0 -1.7 39 57-103 77-118 (125)
19 2qzg_A Conserved uncharacteriz 22.8 1.1E+02 0.0039 19.2 3.8 29 26-54 62-93 (94)
No 1
>3r8n_N 30S ribosomal protein S14; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_N 1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N 2qbf_N 2qbh_N* 2qbj_N* 2qou_N* 2qow_N* 2qoy_N* 2qp0_N* 2vho_N 2vhp_N 2ykr_N ...
Probab=100.00 E-value=3.5e-46 Score=247.56 Aligned_cols=99 Identities=42% Similarity=0.581 Sum_probs=92.0
Q ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCCccccccccccCCCcchhhcccCccH
Q 034126 5 SEKR-NIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSR 83 (103)
Q Consensus 5 ~~~~-~~rd~krR~l~~k~e~~R~~lK~i~~n~~l~~~~r~~~~~~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lSR 83 (103)
|+++ |+||.+||+++++||.+|.+||++++|+++|.++|++|+.+|++||+|||||+++|||++|||||||+++|||||
T Consensus 1 akks~i~Rd~kRr~lv~ky~~kR~~LK~i~~n~~l~~~~R~~a~~kL~~LPRnSs~~r~~nRC~~tGR~rg~~r~f~lsR 80 (100)
T 3r8n_N 1 AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSR 80 (100)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTTGGGTTTTTSSSCC----CCSHHHHTCCSCSTTSGGGCCCCBTTTBCSSSCCGGGTSCH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccccchhhhcccccCCCCCceecCCCCchH
Confidence 3454 679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccccC
Q 034126 84 IVFRSLANQGMLMGVKKASW 103 (103)
Q Consensus 84 ~~fR~~a~~G~lpGv~KssW 103 (103)
++|||+|+.|+||||+||||
T Consensus 81 ~~fRe~a~~g~lpGv~KasW 100 (100)
T 3r8n_N 81 IKVREAAMRGEIPGLKKASW 100 (100)
T ss_dssp HHHHHHHHHSCSTTEEECCC
T ss_pred HHHHHHHHcCCCCCeeeccC
Confidence 99999999999999999999
No 2
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.9e-45 Score=244.13 Aligned_cols=99 Identities=33% Similarity=0.517 Sum_probs=95.8
Q ss_pred hhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCCccccccccccCCCcchhhcccCcc
Q 034126 4 VSEKR-NIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMS 82 (103)
Q Consensus 4 m~~~~-~~rd~krR~l~~k~e~~R~~lK~i~~n~~l~~~~r~~~~~~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lS 82 (103)
||+++ |+||++||+++++||.+|.+||++++|++ |.+++++++.+|++||+||++|+++|||++|||||||+++||||
T Consensus 1 Makks~i~Rd~kRr~l~~ky~~kR~~LK~~~~~~~-~~~~r~~a~~kL~~lPRns~~~r~~nRC~~tGR~rg~~r~fgls 79 (100)
T 3bbn_N 1 MARKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVT-SLSDKWEIHGKLQSPPRNSAPARLHRRCFLTGRPRANIRDFGLS 79 (100)
T ss_dssp -CCTTHHHHHHTTTSSTTTTSSSTTTTTTTTSSCC-SSSCCCSHHHHSCCSCSSCCGGGCCCCCSSSCCSSSBCTTTCSB
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCcccccccccccccCCCCCceeecccCcH
Confidence 88776 56999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccccC
Q 034126 83 RIVFRSLANQGMLMGVKKASW 103 (103)
Q Consensus 83 R~~fR~~a~~G~lpGv~KssW 103 (103)
|++|||+|+.|+||||+||||
T Consensus 80 R~~fRe~a~~g~lpGv~KssW 100 (100)
T 3bbn_N 80 GHILREMVHTCLLPGATRSSW 100 (100)
T ss_dssp TTHHHHHHTTTCSSSCEECCC
T ss_pred HHHHHHHHHcCCCCCeeeccC
Confidence 999999999999999999999
No 3
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=99.94 E-value=1.3e-27 Score=145.79 Aligned_cols=53 Identities=42% Similarity=0.684 Sum_probs=50.9
Q ss_pred hcCCCCCCccccccccccCCCcchhhcccCccHHHHHHhhhcCCCCCcccccC
Q 034126 51 ARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103 (103)
Q Consensus 51 ~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lSR~~fR~~a~~G~lpGv~KssW 103 (103)
...++++++++++|||.+|||+|||+|+|||||++|||+|+.|+||||+||||
T Consensus 9 k~~~~~~~~~r~~nRC~~~GR~rg~iRkfglcR~~FRe~A~~g~lpGv~KasW 61 (61)
T 2vqe_N 9 KAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 61 (61)
T ss_dssp GCCSCCSSGGGCCCCCTTTCCCTTCCTTTSSCHHHHHHHHHHTCSSSCEECCC
T ss_pred HhccCCCCCCCCceeeecCCCCceeeccCceeHHHHHHHHhCCccCCeEeeeC
Confidence 35778999999999999999999999999999999999999999999999999
No 4
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=99.43 E-value=7.4e-14 Score=83.21 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=33.2
Q ss_pred CccccccccccCCCcchhhcccC--ccHHHHHHhhhc
Q 034126 58 SFTRLRNRCIFTGRSRAVYEKFR--MSRIVFRSLANQ 92 (103)
Q Consensus 58 s~tri~nRC~~TGR~Rgv~r~f~--lSR~~fR~~a~~ 92 (103)
.+++.+|||.+|||++|++|+|| |||++|||+|+.
T Consensus 12 ~~~r~~nrC~~cGr~rg~iRkfgl~lcR~cFRe~A~~ 48 (55)
T 2xzm_N 12 NYGKDSKECRVCGARQGLITKYEMMTCRRCFREQAPH 48 (55)
T ss_dssp TSSGGGCCCTTTCCSSTTCCCSSSCCCHHHHHHHHHH
T ss_pred CCCCCceEeecCCCCcchHHHhCCchhhHHHHHHHHH
Confidence 46899999999999999999999 999999999985
No 5
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.20 E-value=9.1e-12 Score=74.33 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=32.2
Q ss_pred CccccccccccCCCcchhhcccCc--cHHHHHHhhhc
Q 034126 58 SFTRLRNRCIFTGRSRAVYEKFRM--SRIVFRSLANQ 92 (103)
Q Consensus 58 s~tri~nRC~~TGR~Rgv~r~f~l--SR~~fR~~a~~ 92 (103)
...+-.|+|.+|||++|++|+||| ||++|||+|+.
T Consensus 13 ~~grg~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A~~ 49 (56)
T 3j20_P 13 KFGKGARRCIRCGQYGPIIRIQGLMLCRHCFREVAPK 49 (56)
T ss_dssp SSSSTTCCCSSSCCSSSCCCTTTCCCCHHHHHHHHHH
T ss_pred ccCCCceEeecCCCCcccccccCChHHHHHHHHHHHh
Confidence 356788999999999999999999 99999999975
No 6
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=99.15 E-value=8.5e-12 Score=74.49 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=33.3
Q ss_pred cCCCCCCccccccccccCCCcchhhcccCc--cHHHHHHhhhc
Q 034126 52 RLPRNSSFTRLRNRCIFTGRSRAVYEKFRM--SRIVFRSLANQ 92 (103)
Q Consensus 52 ~lpr~ss~tri~nRC~~TGR~Rgv~r~f~l--SR~~fR~~a~~ 92 (103)
.-|++. -+-.|+|.+|||++|++|+||| ||++|||+|+.
T Consensus 9 sh~r~~--G~g~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A~~ 49 (56)
T 3iz6_N 9 SHPKNY--GAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKD 49 (56)
T ss_dssp CCCCCC--CCCCCCCSSCCCSCCCTTTTSCTTHHHHHHTTCCS
T ss_pred CCcccc--CCCcceeecCCCCcccccccCCcHHHHHHHHHHHh
Confidence 445543 3568999999999999999999 99999999975
No 7
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=99.12 E-value=2.2e-11 Score=72.63 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=33.0
Q ss_pred CCCCCCccccccccccCCCcchhhcccC--ccHHHHHHhhhc
Q 034126 53 LPRNSSFTRLRNRCIFTGRSRAVYEKFR--MSRIVFRSLANQ 92 (103)
Q Consensus 53 lpr~ss~tri~nRC~~TGR~Rgv~r~f~--lSR~~fR~~a~~ 92 (103)
-|++. .+-.|+|.+|||++|++|+|| |||++|||+|+.
T Consensus 10 hpr~~--G~gs~rC~vcGr~~g~iRkfGl~lcR~cfRe~A~~ 49 (56)
T 3u5c_d 10 HPRRY--GKGSRQCRVCSSHTGLIRKYGLNICRQCFREKAND 49 (56)
T ss_dssp CCCSS--SGGGCCCTTTCCCSSEECGGGCCEEHHHHHHHHHH
T ss_pred CCccc--CCCcceeecCCCCcccccccCcchhHHHHHHHHHh
Confidence 45543 466899999999999999999 999999999975
No 8
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=48.18 E-value=14 Score=19.90 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034126 4 VSEKRNIEDHKRRLLATKFELKRKLYKSLYR 34 (103)
Q Consensus 4 m~~~~~~rd~krR~l~~k~e~~R~~lK~i~~ 34 (103)
||....-||..+.+.+.+....|++|--++.
T Consensus 3 ~Ads~~tr~~rkerIv~eCnavrqALQdLls 33 (40)
T 4e17_B 3 IQDSSCTRDDRRERIVAECNAVRQALQDLLS 33 (40)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888999999999999999999987653
No 9
>2rig_A Interferon-gamma; cytokine; 2.30A {Oryctolagus cuniculus} SCOP: a.26.1.3
Probab=48.00 E-value=17 Score=24.80 Aligned_cols=68 Identities=22% Similarity=0.203 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH----hcCCCCCC-ccccccccccCCCcchhh
Q 034126 9 NIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKL----ARLPRNSS-FTRLRNRCIFTGRSRAVY 76 (103)
Q Consensus 9 ~~rd~krR~l~~k~e~~R~~lK~i~~n~~l~~~~r~~~~~~L----~~lpr~ss-~tri~nRC~~TGR~Rgv~ 76 (103)
.+++.-....|.....+..-+..+.+=+.-.+.+.-.|..+| +.|-..++ .-|-+.+|.+.||.++.|
T Consensus 72 ~Ik~~L~~~~f~~~~~kl~d~~~L~~i~vnD~~VQrKAi~EL~~V~~~lS~~~~~rKrkrsq~~f~g~~~s~~ 144 (144)
T 2rig_A 72 SIKEDIFVKFFNSNLTKMDDFQNLTRISVDDRLVQRKAVSELSNVLNFLSPKSNLKKRKRSQTLFRGRRASKY 144 (144)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhCccchhhHHHHhhhcccccccccC
Confidence 356666667777777777777777766666666666666555 33333333 367788999999987543
No 10
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=46.22 E-value=11 Score=21.12 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=18.2
Q ss_pred CccHHHHHHhhhcCCC--CCcc
Q 034126 80 RMSRIVFRSLANQGML--MGVK 99 (103)
Q Consensus 80 ~lSR~~fR~~a~~G~l--pGv~ 99 (103)
..|.-.++.+|..|.| |+++
T Consensus 15 ~~s~~Tl~r~ar~G~I~Pp~~K 36 (52)
T 2og0_A 15 PRSLETVRRWVRESRIFPPPVK 36 (52)
T ss_dssp CCCHHHHHHHHHTTCEESCCEE
T ss_pred CCCHHHHHHHHHCCCCCCcccc
Confidence 6899999999999999 8876
No 11
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=44.35 E-value=35 Score=24.31 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhcC
Q 034126 5 SEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARL 53 (103)
Q Consensus 5 ~~~~~~rd~krR~l~~k~e~~R~~lK~i~~n~~l~~~~r~~~~~~L~~l 53 (103)
+..++.||..|-+. ...|+.|+.|..++.+.+..|+.+|..|
T Consensus 86 ae~RL~REq~Rsk~-------~E~L~eII~n~n~S~eeK~eA~~ql~eL 127 (197)
T 3tuf_A 86 TTYRLDLEDARSKE-------REELNAIVSSDDATAKEKSEAYDKMTAL 127 (197)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 34556666666544 3568899999999999999998887654
No 12
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=38.54 E-value=6.6 Score=22.41 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=21.7
Q ss_pred chhhcccCccHHHHHHhhhcCCCCC
Q 034126 73 RAVYEKFRMSRIVFRSLANQGMLMG 97 (103)
Q Consensus 73 Rgv~r~f~lSR~~fR~~a~~G~lpG 97 (103)
.-|-..+|+||-.+.++...|.+|-
T Consensus 14 ~eva~~lgvsrstiy~~~~~g~fP~ 38 (66)
T 1z4h_A 14 KFIMADTGFGKTFIYDRIKSGDLPK 38 (66)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCC
Confidence 4566678999999999999999997
No 13
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=37.41 E-value=20 Score=21.12 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=17.6
Q ss_pred hcccCccHHHHHHhhhcC-CCC
Q 034126 76 YEKFRMSRIVFRSLANQG-MLM 96 (103)
Q Consensus 76 ~r~f~lSR~~fR~~a~~G-~lp 96 (103)
-..||+++-.+++|+..| ..|
T Consensus 23 AeylgIg~~~l~~L~~~~~~~~ 44 (70)
T 1y6u_A 23 SKYFRIGENKLRRLAEENKNAN 44 (70)
T ss_dssp HHHTCSCHHHHHHHHHHCTTCS
T ss_pred HHHHCcCHHHHHHHHHcCCCCC
Confidence 357899999999999998 544
No 14
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=34.26 E-value=23 Score=24.16 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.7
Q ss_pred cccCccHHHHHHhhhcCCCCCccc
Q 034126 77 EKFRMSRIVFRSLANQGMLMGVKK 100 (103)
Q Consensus 77 r~f~lSR~~fR~~a~~G~lpGv~K 100 (103)
...|+|+...+++...|.||+|+.
T Consensus 39 e~LgVs~srV~~LIr~G~L~AVr~ 62 (148)
T 2kfs_A 39 ELLGVPVSKVAQQLREGHLVAVRR 62 (148)
T ss_dssp HHHTCCHHHHHHHHHTTSCCCEEE
T ss_pred HHhCCCHHHHHHHHHCCCceEEEE
Confidence 467999999999999999999975
No 15
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=30.23 E-value=47 Score=19.29 Aligned_cols=31 Identities=13% Similarity=0.277 Sum_probs=19.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034126 3 TVSEKRNIEDHKRRLLATKFELKRKLYKSLY 33 (103)
Q Consensus 3 ~m~~~~~~rd~krR~l~~k~e~~R~~lK~i~ 33 (103)
.||...+-||..+.+.+.+....|++|--++
T Consensus 21 ~~Ads~~tr~~rke~Iv~eCnavrqALQdLl 51 (59)
T 4e18_B 21 LMADSSCTRDDRRERIVAECNAVRQALQDLL 51 (59)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999999999998765
No 16
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=29.47 E-value=26 Score=20.94 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=18.1
Q ss_pred CccHHHHHHhhhcCCC--CCcc
Q 034126 80 RMSRIVFRSLANQGML--MGVK 99 (103)
Q Consensus 80 ~lSR~~fR~~a~~G~l--pGv~ 99 (103)
..|.-.++.+|..|.| |+++
T Consensus 15 ~~s~~Tl~r~ar~G~I~Pp~~K 36 (72)
T 1pm6_A 15 PRSLETVRRWVRESRIFPPPVK 36 (72)
T ss_dssp CCCHHHHHHHHHHTCEESCCEE
T ss_pred CCCHHHHHHHHHCCCCCCchhh
Confidence 6899999999999999 8875
No 17
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=25.22 E-value=41 Score=18.84 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.1
Q ss_pred hhcccCccHHHHHHhhhcCCCCCccc
Q 034126 75 VYEKFRMSRIVFRSLANQGMLMGVKK 100 (103)
Q Consensus 75 v~r~f~lSR~~fR~~a~~G~lpGv~K 100 (103)
+-..+|+|+--++.....|. |-.++
T Consensus 8 ~a~~LgvS~~Tl~rw~~~G~-P~~~~ 32 (68)
T 1j9i_A 8 LADIFGASIRTIQNWQEQGM-PVLRG 32 (68)
T ss_dssp HHHHTTCCHHHHHHHTTTTC-CCSSC
T ss_pred HHHHHCcCHHHHHHHHHCCC-CeEee
Confidence 45678999999999999999 87664
No 18
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A
Probab=24.28 E-value=7.1 Score=26.01 Aligned_cols=39 Identities=18% Similarity=0.423 Sum_probs=28.1
Q ss_pred CCccccccccccCCCcchhhcccCcc-HHHHHHhhhcC--CCCCcccccC
Q 034126 57 SSFTRLRNRCIFTGRSRAVYEKFRMS-RIVFRSLANQG--MLMGVKKASW 103 (103)
Q Consensus 57 ss~tri~nRC~~TGR~Rgv~r~f~lS-R~~fR~~a~~G--~lpGv~KssW 103 (103)
+--++|.++|.-.| +-|| .-.|.+++..| .-+|+..-+|
T Consensus 77 sV~V~VvD~CP~gg--------LDLS~~~AF~~Ia~~g~G~~~G~i~V~w 118 (125)
T 1bw3_A 77 QITARIVDQCANGG--------LDLDWDTVFTKIDTNGIGYQQGHLNVNY 118 (125)
T ss_dssp EEEEEEEECCSSSS--------CCSCSSSSHHHHCSSCHHHHHSEEEEEE
T ss_pred EEEEEEEEeCCCCC--------CCCCCHHHHHHHhccCCcccCcEEEEEE
Confidence 34567788898533 8999 99999999855 4467665544
No 19
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=22.77 E-value=1.1e+02 Score=19.20 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=21.7
Q ss_pred HHHHHHHhhCCCCCHHHH---HHHHHHHhcCC
Q 034126 26 RKLYKSLYRDVNLPTEVR---EKYLCKLARLP 54 (103)
Q Consensus 26 R~~lK~i~~n~~l~~~~r---~~~~~~L~~lp 54 (103)
--+|-.|..|++.|...| |++.-+|..+|
T Consensus 62 Is~LDeISnDPNmP~htRT~IW~ivS~LEti~ 93 (94)
T 2qzg_A 62 IQYLDDISEDPNMPIHTRTQIWGIVSELETIK 93 (94)
T ss_dssp HHHHHHHTTCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHhccc
Confidence 356777888999999888 66767776654
Done!