BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034128
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DHM|A Chain A, Solution Structure Of The Bola Protein From Escherichia
Coli
Length = 107
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 61/97 (62%), Gaps = 7/97 (7%)
Query: 3 SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPK 62
S G++ ++ R R+E KLR+A + LE+ D S++H A E+HF + +VS +
Sbjct: 2 SSGSSGMMIRE-RIEEKLRAAFQPVFLEVVDESYRHNVPAG------SESHFKVVLVSDR 54
Query: 63 FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
F G+ +NRHRM+Y L++EL++ +HAL++ T +E
Sbjct: 55 FTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKE 91
>pdb|1V60|A Chain A, Solution Structure Of Bola1 Protein From Mus Musculus
Length = 123
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
Query: 16 METKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMV 75
+ KL AL VLE+ + S GHA S ETHF + +VS +FEG + + RHR+V
Sbjct: 31 IRAKLEQALSPEVLELRNES---GGHAVPAGS---ETHFRVAVVSSRFEGMSPLQRHRLV 84
Query: 76 YQVLSDELNSGLHALSIVAKTPQE 99
++ LS+EL +HAL+I AKTP +
Sbjct: 85 HEALSEELAGPVHALAIQAKTPAQ 108
>pdb|2KDN|A Chain A, Solution Structure Of Pfe0790c, A Putative Bola-Like
Protein From The Protozoan Parasite Plasmodium
Falciparum
Length = 108
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 16 METKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMV 75
+E KL SAL+ T LE+ D K G T FD IVS FE K L++RHR+V
Sbjct: 29 IEDKLSSALKPTFLELVD-----------KSCGCG-TSFDAVIVSNNFEDKKLLDRHRLV 76
Query: 76 YQVLSDELNSGLHALSIVAKTPQE 99
+L +EL + +HA S+ TP E
Sbjct: 77 NTILKEELQN-IHAFSMKCHTPLE 99
>pdb|1XS3|A Chain A, Solution Structure Analysis Of The Xc975 Protein
Length = 80
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 53 HFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEA 100
HF+ +VSP F GK + RHRMVY L + + +HAL + TP EA
Sbjct: 33 HFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDEA 80
>pdb|1V9J|A Chain A, Solution Structure Of A Bola-Like Protein From Mus
Musculus
Length = 113
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 3 SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPK 62
S GA + A + KLR LEA +E++D + N T F + +VS K
Sbjct: 22 SEGAATMELSADYLREKLRQDLEAEHVEVEDTT-----------LNRCATSFRVLVVSAK 70
Query: 63 FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
FEGK L+ RHR+V + L++EL +HA TP++
Sbjct: 71 FEGKPLLQRHRLVNECLAEELPH-IHAFEQKTLTPEQ 106
>pdb|3TR3|A Chain A, Structure Of A Bola Protein Homologue From Coxiella
Burnetii
pdb|3TR3|B Chain B, Structure Of A Bola Protein Homologue From Coxiella
Burnetii
Length = 82
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 53 HFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
HF+ ++ P FEG+ + RHR+VY L S +HALS+ TP E
Sbjct: 32 HFEAVVLCPTFEGQTALTRHRLVYNALGSHXQSDIHALSLKTYTPDE 78
>pdb|3O2E|A Chain A, Crystal Structure Of A Bol-Like Protein From Babesia Bovis
Length = 105
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 3 SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPK 62
++G +++++++ +E +LRS L L++ D +S F+ IVS +
Sbjct: 16 TQGPGSMVSKSI-VEERLRSMLSPQFLKVTD------------NSGGCGAAFNAYIVSQQ 62
Query: 63 FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAALK 103
FEGK L++R R+V ++ E+ +HA ++ TP E K
Sbjct: 63 FEGKGLLDRQRLVNSAIAAEMPQ-IHAFTMKCLTPGEWEAK 102
>pdb|2KZ0|A Chain A, Solution Structure Of A Bola Protein (Ech_0303) From
Ehrlichia Chaffeensis. Seattle Structural Genomics
Center For Infectious Disease Target Ehcha.10365.A
Length = 76
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 7/49 (14%)
Query: 44 VKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSI 92
V D+N H+ +K++S +F+GK+ + +HRM+Y+VL D LN +HA+ I
Sbjct: 30 VGDNN----HYSIKVISSQFQGKSKLEQHRMIYKVL-DGLN--IHAIQI 71
>pdb|1NY8|A Chain A, Solution Structure Of Protein Yrba From Escherichia Coli:
Northeast Structural Genomics Consortium Target Er115
Length = 97
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 52 THFDLKIVSPKFEGKNLVNRHRMVYQVLSDEL-NSGLHALSIVAKTPQEAA 101
+HF + V F+G + V + + VY L + + ++ +HA+SI A TP E A
Sbjct: 31 SHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWA 81
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 63 FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
FE ++ R R Q D+L +G A +I+A+ PQE
Sbjct: 562 FETEDFDVRSRTSVQTEDDQLIAGQSARAIMAQLPQE 598
>pdb|3LGD|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGD|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGG|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
pdb|3LGG|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
Length = 508
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 8 AVIARAMRMETKLRSALEATVLEIDDVSHKHAGHA 42
AVIA ++RM LR V D V H+ GH+
Sbjct: 273 AVIAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHS 307
>pdb|2X0D|A Chain A, Apo Structure Of Wsaf
pdb|2X0D|B Chain B, Apo Structure Of Wsaf
Length = 413
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 53 HFDLKIVSPKFEGKNLVNRHRMVYQVLSDELN 84
HF L++++ K+E K+L N H + + ++LN
Sbjct: 336 HFGLRVITNKYENKDLSNWHSNIVSL--EQLN 365
>pdb|2X0E|A Chain A, Complex Structure Of Wsaf With Dtdp
pdb|2X0E|B Chain B, Complex Structure Of Wsaf With Dtdp
pdb|2X0F|A Chain A, Structure Of Wsaf In Complex With Dtdp-Beta-L-Rha
pdb|2X0F|B Chain B, Structure Of Wsaf In Complex With Dtdp-Beta-L-Rha
Length = 413
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 53 HFDLKIVSPKFEGKNLVNRH 72
HF L++++ K+E K+L N H
Sbjct: 336 HFGLRVITNKYENKDLSNWH 355
>pdb|3RHG|A Chain A, Crystal Structure Of Amidohydrolase Pmi1525 (Target
Efi-500319) From Proteus Mirabilis Hi4320
Length = 365
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 62 KFEGKNLVNRHRMVYQVLSDELNSGLHALSIVA 94
KFEGK L + + +++ DELN G+ I A
Sbjct: 129 KFEGKRLADDIDAMAKMIDDELNIGIDGTDIRA 161
>pdb|1VB3|A Chain A, Crystal Structure Of Threonine Synthase From Escherichia
Coli
Length = 428
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 37 KHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKT 96
K G+AAV D + +T +LK + E V Y+ L D+LN G + L +
Sbjct: 324 KELGYAAVDDETTQQTMRELKELGYTSEPHAAV-----AYRALRDQLNPGEYGLFLGTAH 378
Query: 97 P 97
P
Sbjct: 379 P 379
>pdb|3ZNH|A Chain A, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 183
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 43 AVKDSNSGETHFDLKIVSPKFE 64
AV +SG+THFD + P+FE
Sbjct: 141 AVNLLHSGQTHFDALRILPQFE 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.126 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,672,691
Number of Sequences: 62578
Number of extensions: 95936
Number of successful extensions: 260
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 23
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)