Query 034128
Match_columns 103
No_of_seqs 106 out of 1037
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dhm_A Protein BOLA; stationar 100.0 5.7E-37 2E-41 207.6 9.5 87 10-102 8-94 (107)
2 1v60_A BOLA1, riken cDNA 18100 100.0 3.5E-36 1.2E-40 208.0 11.6 92 5-102 20-111 (123)
3 1v9j_A BOLA-like protein riken 100.0 8.8E-35 3E-39 198.4 6.8 90 1-102 20-109 (113)
4 2kdn_A Putative uncharacterize 100.0 5.9E-34 2E-38 193.0 9.9 83 7-102 20-102 (108)
5 3o2e_A BOLA-like protein; ssgc 100.0 3.5E-34 1.2E-38 193.3 7.9 82 9-103 21-102 (105)
6 3tr3_A BOLA; cellular processe 100.0 7.2E-33 2.5E-37 179.7 7.8 79 9-102 3-81 (82)
7 1xs3_A Hypothetical protein XC 100.0 3.6E-32 1.2E-36 175.6 7.0 77 9-100 4-80 (80)
8 1ny8_A Protein YRBA; structure 100.0 2.6E-31 8.9E-36 177.1 6.3 76 11-102 6-82 (97)
9 2kz0_A BOLA family protein; BO 100.0 1.3E-30 4.4E-35 167.0 5.1 76 6-97 1-76 (76)
10 1ylq_A Putative nucleotidyltra 96.4 0.029 9.8E-07 35.5 8.2 77 12-101 3-80 (96)
11 2rff_A Putative nucleotidyltra 90.9 0.42 1.5E-05 31.0 4.9 76 12-102 18-94 (111)
12 1xhj_A Nitrogen fixation prote 54.1 11 0.00039 23.6 3.0 18 9-26 55-72 (88)
13 2ljk_A Protein C17ORF37; MIEN1 46.5 24 0.00082 23.3 3.8 30 5-34 33-62 (117)
14 1no5_A Hypothetical protein HI 46.1 52 0.0018 20.5 8.4 61 10-81 11-71 (114)
15 1ghh_A DINI, DNA-damage-induci 37.2 73 0.0025 19.6 7.3 57 5-84 14-72 (81)
16 2eln_A Zinc finger protein 406 34.2 13 0.00045 19.0 0.8 27 50-76 6-34 (38)
17 2lvu_A Zinc finger and BTB dom 39.7 8.9 0.0003 16.5 0.0 19 57-75 6-24 (26)
18 2elx_A Zinc finger protein 406 32.9 8.6 0.00029 17.8 -0.1 24 52-75 6-29 (35)
19 2hjj_A Hypothetical protein YK 31.7 29 0.00098 22.0 2.2 19 28-61 26-44 (87)
20 2m0e_A Zinc finger and BTB dom 31.5 35 0.0012 14.3 2.4 18 59-76 8-25 (29)
21 2elr_A Zinc finger protein 406 30.2 10 0.00035 17.7 -0.1 25 52-76 8-32 (36)
22 2kvh_A Zinc finger and BTB dom 30.1 10 0.00034 16.5 -0.1 19 57-75 7-25 (27)
23 1klr_A Zinc finger Y-chromosom 29.4 40 0.0014 14.3 2.0 18 59-76 8-25 (30)
24 2lvr_A Zinc finger and BTB dom 35.4 11 0.00039 16.4 0.0 22 55-76 5-26 (30)
25 2oka_A Hypothetical protein; P 29.1 1.1E+02 0.0039 19.5 5.3 29 5-33 14-44 (104)
26 2elp_A Zinc finger protein 406 28.5 19 0.00064 16.9 0.8 25 52-76 8-33 (37)
27 2p0g_A Selenoprotein W-related 28.4 1.2E+02 0.0041 19.4 5.1 28 5-32 12-39 (105)
28 2fa8_A Hypothetical protein AT 27.8 90 0.0031 20.0 4.2 30 5-34 16-47 (105)
29 2npb_A Selenoprotein W; struct 27.6 1.1E+02 0.0038 19.1 4.6 28 5-32 11-39 (96)
30 2els_A Zinc finger protein 406 27.2 14 0.00048 17.2 0.1 25 52-76 8-32 (36)
31 1fv5_A First zinc finger of U- 27.0 13 0.00043 19.0 -0.1 24 50-73 5-28 (36)
32 2lvt_A Zinc finger and BTB dom 33.0 13 0.00046 16.2 0.0 20 57-76 6-25 (29)
33 3hfe_A Potassium voltage-gated 26.9 45 0.0015 17.1 2.0 19 3-21 2-20 (31)
34 3nyb_A Poly(A) RNA polymerase 26.3 2E+02 0.0068 21.3 7.9 44 12-63 45-88 (323)
35 3d7a_A UPF0201 protein PH1010; 26.2 1.3E+02 0.0046 19.8 5.0 21 13-33 20-40 (138)
36 1va1_A Transcription factor SP 25.6 22 0.00075 16.8 0.7 25 52-76 7-33 (37)
37 2elm_A Zinc finger protein 406 25.6 12 0.00042 17.8 -0.3 24 52-75 8-32 (37)
38 1ard_A Yeast transcription fac 25.6 35 0.0012 14.4 1.4 18 59-76 8-25 (29)
39 3bej_E Nuclear receptor coacti 25.1 48 0.0017 16.2 1.9 15 67-81 7-21 (26)
40 2elt_A Zinc finger protein 406 24.6 16 0.00056 16.8 0.1 25 52-76 8-32 (36)
41 2kvf_A Zinc finger and BTB dom 24.5 7.6 0.00026 17.0 -1.2 20 56-75 6-25 (28)
42 1iio_A Conserved hypothetical 24.1 42 0.0014 21.1 1.9 25 5-29 1-25 (84)
43 2gco_A H9, RHO-related GTP-bin 23.8 49 0.0017 21.7 2.4 37 34-70 3-42 (201)
44 2elo_A Zinc finger protein 406 23.4 16 0.00055 17.0 -0.1 25 52-76 8-32 (37)
45 2epw_A Zinc finger protein 268 23.3 21 0.00072 17.6 0.4 24 52-75 11-34 (46)
46 2ab3_A ZNF29; zinc finger prot 23.0 9.8 0.00034 16.5 -1.0 16 60-75 11-26 (29)
47 2ely_A Zinc finger protein 224 23.0 26 0.0009 17.3 0.7 25 52-76 11-35 (46)
48 2emp_A Zinc finger protein 347 22.7 21 0.00072 17.7 0.3 25 52-76 11-35 (46)
49 2yu5_A Zinc finger protein 473 22.6 22 0.00077 17.4 0.4 24 52-75 11-34 (44)
50 1zfd_A SWI5; DNA binding motif 22.6 31 0.0011 15.3 0.9 17 59-75 11-27 (32)
51 2elq_A Zinc finger protein 406 22.5 18 0.00061 16.8 -0.0 24 52-75 8-31 (36)
52 1srk_A Zinc finger protein ZFP 22.5 11 0.00037 17.5 -0.9 24 52-75 6-29 (35)
53 3r8n_K 30S ribosomal protein S 22.4 1.7E+02 0.0057 19.0 4.9 63 21-97 12-77 (117)
54 3vu7_H DNA repair protein REV1 22.2 58 0.002 21.5 2.5 31 50-80 19-49 (124)
55 2epp_A POZ-, at HOOK-, and zin 22.1 22 0.00075 20.6 0.3 28 50-77 10-37 (66)
56 3byp_A CZRB protein; membrane 21.6 89 0.003 18.4 3.1 24 11-34 61-84 (94)
57 2eo4_A 150AA long hypothetical 21.6 1.7E+02 0.0058 18.8 5.0 44 8-59 57-100 (149)
58 2a5j_A RAS-related protein RAB 21.5 73 0.0025 20.5 2.9 21 50-70 18-38 (191)
59 3dex_A SAV_2001; alpha-beta pr 20.9 1.8E+02 0.006 18.8 5.3 28 5-32 21-50 (107)
60 2eom_A ZFP-95, zinc finger pro 20.8 30 0.001 17.1 0.7 25 52-76 11-35 (46)
61 1bhi_A CRE-BP1, ATF-2; CRE bin 20.7 28 0.00094 16.3 0.5 25 53-77 6-32 (38)
62 1rik_A E6APC1 peptide; E6-bind 20.7 14 0.00047 16.1 -0.7 17 59-75 8-24 (29)
63 2emx_A Zinc finger protein 268 20.7 22 0.00077 17.3 0.1 25 52-76 9-33 (44)
64 1rim_A E6APC2 peptide; E6-bind 20.6 16 0.00055 17.0 -0.4 18 59-76 8-25 (33)
65 2m0f_A Zinc finger and BTB dom 20.6 17 0.00057 15.6 -0.4 18 59-76 8-25 (29)
66 2yu8_A Zinc finger protein 347 20.4 24 0.00082 17.4 0.2 25 52-76 11-35 (46)
67 2emj_A Zinc finger protein 28 20.2 21 0.0007 17.8 -0.1 25 52-76 11-35 (46)
No 1
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}
Probab=100.00 E-value=5.7e-37 Score=207.57 Aligned_cols=87 Identities=38% Similarity=0.587 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcce
Q 034128 10 IARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHA 89 (103)
Q Consensus 10 ~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iHA 89 (103)
|+++++|+++|+++|+|+.|+|.|+|++|+||. | |+ +||+|+|||+.|+||++|+||||||++|+++|+++|||
T Consensus 8 m~~~~~I~~~L~~~l~p~~l~V~d~S~~H~~~~----G-~g-sHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IHA 81 (107)
T 2dhm_A 8 MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPA----G-SE-SHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHA 81 (107)
T ss_dssp CCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCC----C-SC-CCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCC
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEECcccccCCC----C-CC-ceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcce
Confidence 568899999999999999999999999999975 2 35 99999999999999999999999999999999977999
Q ss_pred EEEEecChhHHhh
Q 034128 90 LSIVAKTPQEAAL 102 (103)
Q Consensus 90 lsi~t~tp~Ew~~ 102 (103)
|+|+||||+||++
T Consensus 82 Lsi~t~TP~Ew~~ 94 (107)
T 2dhm_A 82 LALHTYTIKEWEG 94 (107)
T ss_dssp CEEEEECHHHHHT
T ss_pred EEEEecCHHHHHh
Confidence 9999999999985
No 2
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=100.00 E-value=3.5e-36 Score=208.02 Aligned_cols=92 Identities=41% Similarity=0.550 Sum_probs=84.6
Q ss_pred CCcchhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhc
Q 034128 5 GANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELN 84 (103)
Q Consensus 5 ~~~~~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~ 84 (103)
.++...+++++|+++|+++|+|+.|+|+|+|++|+||. | |+ +||+|+|||+.|+||++|+||||||++|+++|+
T Consensus 20 ~~~~~~~~~~~I~~~L~~~l~p~~l~V~DeS~~H~~~~----G-~g-sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~ 93 (123)
T 1v60_A 20 GSAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPA----G-SE-THFRVAVVSSRFEGMSPLQRHRLVHEALSEELA 93 (123)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCT----T-CC-SEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCcHHHHHHHHHHhhCCCeEEEEEECcccccCCC----C-CC-CeEEEEEEehhhCCCCHHHHHHHHHHHHHHHHc
Confidence 34456778999999999999999999999999999875 2 34 999999999999999999999999999999999
Q ss_pred CCcceEEEEecChhHHhh
Q 034128 85 SGLHALSIVAKTPQEAAL 102 (103)
Q Consensus 85 ~~iHAlsi~t~tp~Ew~~ 102 (103)
++||||+|+||||+||++
T Consensus 94 ~~IHALsi~t~TP~Ew~~ 111 (123)
T 1v60_A 94 GPVHALAIQAKTPAQWRE 111 (123)
T ss_dssp TTCSEEEEEEECTTTTTT
T ss_pred CCcceeEeEecCHHHHHh
Confidence 779999999999999986
No 3
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=100.00 E-value=8.8e-35 Score=198.45 Aligned_cols=90 Identities=37% Similarity=0.534 Sum_probs=80.5
Q ss_pred CCCCCCcchhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Q 034128 1 MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLS 80 (103)
Q Consensus 1 ~~~~~~~~~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~ 80 (103)
|++++...+++.+++|+++|+++|+|+.|+|+|+|. +||| +||+|+|||+.|+||++|+|||+||++|+
T Consensus 20 ~~~~~~~~M~m~~~~I~~~L~~~l~p~~l~V~DeS~----------~G~g-sHF~v~IVS~~F~Gks~V~RHRlVy~aL~ 88 (113)
T 1v9j_A 20 RGSEGAATMELSADYLREKLRQDLEAEHVEVEDTTL----------NRCA-TSFRVLVVSAKFEGKPLLQRHRLVNECLA 88 (113)
T ss_dssp SCCCCSSSSSSCHHHHHHHHHHHHTCSEEEEEECCS----------SSSC-CCEEEEEECSHHHHSCHHHHHHHHHHHTT
T ss_pred ccCcccccccCcHHHHHHHHHhhCCCcEEEEEeccC----------CCCC-ceEEEEEEchhhCCCCHHHHHHHHHHHHH
Confidence 445555556578999999999999999999999982 3346 99999999999999999999999999999
Q ss_pred HHhcCCcceEEEEecChhHHhh
Q 034128 81 DELNSGLHALSIVAKTPQEAAL 102 (103)
Q Consensus 81 ~~i~~~iHAlsi~t~tp~Ew~~ 102 (103)
++|+. ||||+|+||||+||++
T Consensus 89 eei~~-IHALsi~t~TP~Ew~~ 109 (113)
T 1v9j_A 89 EELPH-IHAFEQKTLTPEQWTR 109 (113)
T ss_dssp TTGGG-CSSEEEEEECHHHHHH
T ss_pred HHHhc-CceEEEEecChHHHHH
Confidence 99994 9999999999999986
No 4
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}
Probab=100.00 E-value=5.9e-34 Score=193.02 Aligned_cols=83 Identities=42% Similarity=0.600 Sum_probs=76.7
Q ss_pred cchhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 034128 7 NAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSG 86 (103)
Q Consensus 7 ~~~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~ 86 (103)
.+.|+.+++|+++|+++|+|+.|+|.|+| +||| +||+|+|||+.|+||++|+||||||++|+++|+.
T Consensus 20 ~~~Mm~~~~I~~~L~~~l~p~~l~V~DeS-----------~G~g-sHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~- 86 (108)
T 2kdn_A 20 QGHMCIQKVIEDKLSSALKPTFLELVDKS-----------CGCG-TSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQN- 86 (108)
T ss_dssp TTSCSHHHHHHHHHHHHHCCSEEEEEECC-----------CSSS-CCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGG-
T ss_pred cCCCCcHHHHHHHHHhhCCCcEEEEEeCC-----------CCCC-ceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHhc-
Confidence 34467899999999999999999999998 2356 9999999999999999999999999999999994
Q ss_pred cceEEEEecChhHHhh
Q 034128 87 LHALSIVAKTPQEAAL 102 (103)
Q Consensus 87 iHAlsi~t~tp~Ew~~ 102 (103)
||||+|+||||+||++
T Consensus 87 IHALsi~t~TP~Ew~~ 102 (108)
T 2kdn_A 87 IHAFSMKCHTPLEYDK 102 (108)
T ss_dssp CSCEEEEEECHHHHHH
T ss_pred CceEEEEecChHHHHH
Confidence 9999999999999985
No 5
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=100.00 E-value=3.5e-34 Score=193.30 Aligned_cols=82 Identities=34% Similarity=0.547 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcc
Q 034128 9 VIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLH 88 (103)
Q Consensus 9 ~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iH 88 (103)
.|+++++|+++|+++|+|+.|+|.|+| +||| +||+|+|||+.|+|||+|+|||+||++|+++|+ +||
T Consensus 21 ~M~~~~~I~~kL~~~l~p~~l~V~D~S-----------~g~g-sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~-~IH 87 (105)
T 3o2e_A 21 SMVSKSIVEERLRSMLSPQFLKVTDNS-----------GGCG-AAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMP-QIH 87 (105)
T ss_dssp CCCCHHHHHHHHHHHHCCSEEEEEECC-----------BTTB-EEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGG-GEE
T ss_pred cCcHHHHHHHHHHhhCCCCEEEEEECC-----------CCCC-cEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHh-cCc
Confidence 378899999999999999999999998 2346 999999999999999999999999999999998 899
Q ss_pred eEEEEecChhHHhhC
Q 034128 89 ALSIVAKTPQEAALK 103 (103)
Q Consensus 89 Alsi~t~tp~Ew~~~ 103 (103)
||+|+||||+||+++
T Consensus 88 ALsi~t~TP~Ew~~~ 102 (105)
T 3o2e_A 88 AFTMKCLTPGEWEAK 102 (105)
T ss_dssp EEEEEEECHHHHHHT
T ss_pred eeEEEeCCHHHHHHh
Confidence 999999999999864
No 6
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=99.98 E-value=7.2e-33 Score=179.70 Aligned_cols=79 Identities=28% Similarity=0.541 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcc
Q 034128 9 VIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLH 88 (103)
Q Consensus 9 ~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iH 88 (103)
.|+.+++|+++|+++|+|+.|+|.+. || +||+|+|||+.|+|||+|+|||+||++|+++|+++||
T Consensus 3 ~Mm~~~~I~~~L~~~l~~~~l~V~~g--------------~g-shf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~~~iH 67 (82)
T 3tr3_A 3 AMVTTHDIKQWIETGLSESRVISAEG--------------DG-HHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIH 67 (82)
T ss_dssp -CCCHHHHHHHHHHHSTTCEEEEEEE--------------CS-SEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGTTTCS
T ss_pred ccchHHHHHHHHHhhCCCcEEEEEcC--------------CC-CeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 35678999999999999999999932 35 8999999999999999999999999999999987899
Q ss_pred eEEEEecChhHHhh
Q 034128 89 ALSIVAKTPQEAAL 102 (103)
Q Consensus 89 Alsi~t~tp~Ew~~ 102 (103)
||+|+||||+||++
T Consensus 68 AL~i~t~Tp~Ew~~ 81 (82)
T 3tr3_A 68 ALSLKTYTPDEYER 81 (82)
T ss_dssp EEEEEEECHHHHHC
T ss_pred eEEEEeCCHHHHhc
Confidence 99999999999975
No 7
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=99.97 E-value=3.6e-32 Score=175.61 Aligned_cols=77 Identities=34% Similarity=0.585 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcc
Q 034128 9 VIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLH 88 (103)
Q Consensus 9 ~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iH 88 (103)
+|..+++|+++|+++|+|+.|+|.+ +|| +||+|+|||+.|+|||+|+|||+||++|+++|+++||
T Consensus 4 ~mm~~~~I~~~L~~~l~~~~l~V~G--------------~~g-sHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~~~iH 68 (80)
T 1xs3_A 4 RPLDAETIRKLIESGLPEARVDVQG--------------EDG-VHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIH 68 (80)
T ss_dssp SCCHHHHHHHHHHHHSSSCEEEEES--------------CTT-SCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCS
T ss_pred ccCCHHHHHHHHHhhCCCcEEEEEc--------------CCC-CEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHcCCcc
Confidence 3667899999999999999999992 135 8999999999999999999999999999999997799
Q ss_pred eEEEEecChhHH
Q 034128 89 ALSIVAKTPQEA 100 (103)
Q Consensus 89 Alsi~t~tp~Ew 100 (103)
||+|+||||+||
T Consensus 69 ALsi~t~Tp~E~ 80 (80)
T 1xs3_A 69 ALQLKTLTPDEA 80 (80)
T ss_dssp CCEEEEECGGGC
T ss_pred eEEEEecCCCCC
Confidence 999999999997
No 8
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=99.97 E-value=2.6e-31 Score=177.10 Aligned_cols=76 Identities=29% Similarity=0.443 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhc-CCcce
Q 034128 11 ARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELN-SGLHA 89 (103)
Q Consensus 11 ~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~-~~iHA 89 (103)
+.+++|+++|+++|+|+.|+|.+ || +||+|+|||+.|+|||+|+||||||++|+++|+ ++|||
T Consensus 6 m~~~~I~~~L~~~l~p~~l~V~G---------------~g-sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHA 69 (97)
T 1ny8_A 6 MENNEIQSVLMNALSLQEVHVSG---------------DG-SHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHA 69 (97)
T ss_dssp CCCHHHHHHHHHHHCCSEEEEEE---------------SS-SEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSE
T ss_pred cCHHHHHHHHHhhCCCcEEEEEc---------------CC-ceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcce
Confidence 35689999999999999999991 24 899999999999999999999999999999998 57999
Q ss_pred EEEEecChhHHhh
Q 034128 90 LSIVAKTPQEAAL 102 (103)
Q Consensus 90 lsi~t~tp~Ew~~ 102 (103)
|+|+||||+||++
T Consensus 70 Lsi~t~TP~Ew~~ 82 (97)
T 1ny8_A 70 VSIKAYTPAEWAR 82 (97)
T ss_dssp EEEEECCHHHHHH
T ss_pred EEeEecChHHHHh
Confidence 9999999999985
No 9
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=99.96 E-value=1.3e-30 Score=166.99 Aligned_cols=76 Identities=24% Similarity=0.540 Sum_probs=70.9
Q ss_pred CcchhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcC
Q 034128 6 ANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNS 85 (103)
Q Consensus 6 ~~~~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~ 85 (103)
+|.+|..+++|+++|+++|+|+.|+|.|+| | || +||+|+|||+.|+|||+|+|||+||++|+++
T Consensus 1 ~g~M~m~~~~I~~~L~~~l~~~~l~V~d~S-----------G-~g-~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e--- 64 (76)
T 2kz0_A 1 PGSMTVTQSQLELLIRNAFPEAEITVTSLV-----------G-DN-NHYSIKVISSQFQGKSKLEQHRMIYKVLDGL--- 64 (76)
T ss_dssp CCCSSCTTHHHHHHHHHHCTTEEEEEECCS-----------S-TT-SCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS---
T ss_pred CCcCcccHHHHHHHHHhhCCCcEEEEEECC-----------C-Cc-cEEEEEEEchHhCCCCHHHHHHHHHHHhccC---
Confidence 467777889999999999999999999998 2 35 8999999999999999999999999999999
Q ss_pred CcceEEEEecCh
Q 034128 86 GLHALSIVAKTP 97 (103)
Q Consensus 86 ~iHAlsi~t~tp 97 (103)
+||||+|+||||
T Consensus 65 ~iHALsi~t~tp 76 (76)
T 2kz0_A 65 NIHAIQIQTGCK 76 (76)
T ss_dssp CCCSSSEEECCC
T ss_pred CceEEEEEEeCC
Confidence 799999999998
No 10
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.36 E-value=0.029 Score=35.51 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCcc-ceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcceE
Q 034128 12 RAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGE-THFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHAL 90 (103)
Q Consensus 12 ~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~e-sHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iHAl 90 (103)
..++|++.|+..+++..+.+...- ++|+.... |.++|.|+.+. +.+...+-++... |.+.+ .-+.+
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~--------ArG~~~~~~SDiDllV~~~~--~~~~~~~~~l~~~-l~~~~--~~~~v 69 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSV--------VEGDYSIGLSDIDVAIVSDV--FEDRNRKLEFFGK-ITKKF--FDSPF 69 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHH--------HHCCSSSCCCSEEEEEECGG--GGSHHHHHHHHHH-HHHHT--TTCSE
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEE--------EeCCCCCCCCceEEEEEeCC--CCCHHHHHHHHHH-HHHhh--cCCCe
Confidence 467899999988988888888653 23433355 89999999986 5666666665544 44441 23578
Q ss_pred EEEecChhHHh
Q 034128 91 SIVAKTPQEAA 101 (103)
Q Consensus 91 si~t~tp~Ew~ 101 (103)
.+..+||+||+
T Consensus 70 d~~v~~~~~~~ 80 (96)
T 1ylq_A 70 EFHILTKKEWK 80 (96)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEECHHHHc
Confidence 99999999985
No 11
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=90.87 E-value=0.42 Score=31.01 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcC-CCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcceE
Q 034128 12 RAMRMETKLRSAL-EATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHAL 90 (103)
Q Consensus 12 ~~~~I~~~L~~~l-~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iHAl 90 (103)
...++...|.+.+ +...+-++..- ++|+....|.++|.|+.+...+...+.+- ..|.+.+. ..+
T Consensus 18 ~l~~~~~~l~~~~~~v~~v~LFGS~--------ArG~~~~~SDIDl~V~~~~~~~~~~~~~~----~~l~~~l~---~~V 82 (111)
T 2rff_A 18 LAKEIVEEVASSFPNLEEVYIFGSR--------ARGDYLDTSDIDILFVFKGIKEMNVFDRM----YMVSRFIR---GNV 82 (111)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEESHH--------HHSCCCTTCCEEEEEEESSCTTCCHHHHH----HHHGGGCC---SSE
T ss_pred HHHHHHHHHHHHcCCccEEEEEeee--------ecCCCCCCCCEEEEEEecCCCChhHHHHH----HHHHHHhC---CCE
Confidence 3445555666677 44567777542 22322234999999998877666555543 33444443 357
Q ss_pred EEEecChhHHhh
Q 034128 91 SIVAKTPQEAAL 102 (103)
Q Consensus 91 si~t~tp~Ew~~ 102 (103)
.+.+++|++|++
T Consensus 83 Dlv~~~~~~~~~ 94 (111)
T 2rff_A 83 DYIVLDEGEKDR 94 (111)
T ss_dssp EEEEEEGGGGGG
T ss_pred EEEECCHHHHHH
Confidence 888889999874
No 12
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=54.08 E-value=11 Score=23.63 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHhcCCC
Q 034128 9 VIARAMRMETKLRSALEA 26 (103)
Q Consensus 9 ~~~~~~~I~~~L~~~l~~ 26 (103)
.++...-|+++|++.+|.
T Consensus 55 ~~TLk~gIE~~L~~~vPe 72 (88)
T 1xhj_A 55 TITLKAGIERALHEEVPG 72 (88)
T ss_dssp HHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 456678999999999954
No 13
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=46.48 E-value=24 Score=23.29 Aligned_cols=30 Identities=7% Similarity=0.021 Sum_probs=24.7
Q ss_pred CCcchhhHHHHHHHHHHhcCCCceEEEEec
Q 034128 5 GANAVIARAMRMETKLRSALEATVLEIDDV 34 (103)
Q Consensus 5 ~~~~~~~~~~~I~~~L~~~l~~~~v~V~d~ 34 (103)
+.+.++.++..+.+.|.+.|+...|...-.
T Consensus 33 ~~C~~~~ra~~laqeLl~tFp~~~V~l~pg 62 (117)
T 2ljk_A 33 EPCGFEATYLELASAVKEQYPGIEIESRLG 62 (117)
T ss_dssp TTTTCHHHHHHHHHHHTTTCSSSCCEEEEC
T ss_pred CCCCCHHHHHHHHHHHHhhCCcceEEEecC
Confidence 456789999999999999999877766644
No 14
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=46.12 E-value=52 Score=20.51 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHH
Q 034128 10 IARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSD 81 (103)
Q Consensus 10 ~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~ 81 (103)
....+.|++.|+..++...+.++..- ++|+....|.++|.|+.+. +.+...+-+ +...|.+
T Consensus 11 ~~~~~~i~~~l~~~~~v~~v~LFGS~--------ArG~~~~~SDIDl~V~~~~--~~~~~~~~~-l~~~l~~ 71 (114)
T 1no5_A 11 SEELAIVKTILQQLVPDYTVWAFGSR--------VKGKAKKYSDLDLAIISEE--PLDFLARDR-LKEAFSE 71 (114)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEGGG--------TTTCCCTTCCEEEEEECSS--CCCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecc--------CCCCCCCCCCeEEEEEeCC--CCCHHHHHH-HHHHHHh
Confidence 34567888889888888899998763 2333223499999999885 345444433 4445544
No 15
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=37.20 E-value=73 Score=19.63 Aligned_cols=57 Identities=12% Similarity=0.228 Sum_probs=41.4
Q ss_pred CCcchhhHHHHHHHHHHhcCCCc--eEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q 034128 5 GANAVIARAMRMETKLRSALEAT--VLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDE 82 (103)
Q Consensus 5 ~~~~~~~~~~~I~~~L~~~l~~~--~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~ 82 (103)
+.|.+.....++.++|...||.. .|.|.-.| . ..+.|. |-+. .-+..|..+|.+-
T Consensus 14 p~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~s--------------~-n~lsV~-------g~~k-~dKe~i~eiLqE~ 70 (81)
T 1ghh_A 14 PAGAIDALAGELSRRIQYAFPDNEGHVSVRYAA--------------A-NNLSVI-------GATK-EDKQRISEILQET 70 (81)
T ss_dssp CTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEES--------------S-CEEEEE-------SCCH-HHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhCCCCCceEEEeecC--------------C-Cceeec-------CCCh-hHHHHHHHHHHHH
Confidence 46888889999999999999997 89998775 1 344442 2222 2467788888776
Q ss_pred hc
Q 034128 83 LN 84 (103)
Q Consensus 83 i~ 84 (103)
+.
T Consensus 71 we 72 (81)
T 1ghh_A 71 WE 72 (81)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 16
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.22 E-value=13 Score=19.02 Aligned_cols=27 Identities=11% Similarity=-0.034 Sum_probs=21.2
Q ss_pred ccceeEEEE--ECCCCCCCCHHHHHHHHH
Q 034128 50 GETHFDLKI--VSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 50 ~esHf~i~I--vS~~F~G~s~l~RhrlVy 76 (103)
++.-|.... ....|..++.|++|..+.
T Consensus 6 gekp~~C~~~~C~k~F~~~~~L~~H~r~H 34 (38)
T 2eln_A 6 SGILLKCPTDGCDYSTPDKYKLQAHLKVH 34 (38)
T ss_dssp CCCCEECSSSSCCCEESCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence 345677665 788999999999998764
No 17
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.66 E-value=8.9 Score=16.51 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=14.6
Q ss_pred EEECCCCCCCCHHHHHHHH
Q 034128 57 KIVSPKFEGKNLVNRHRMV 75 (103)
Q Consensus 57 ~IvS~~F~G~s~l~RhrlV 75 (103)
.+....|...+.|.+|..+
T Consensus 6 ~~C~k~f~~~~~l~~H~~~ 24 (26)
T 2lvu_A 6 ERCGKRFVQSSQLANHIRH 24 (26)
Confidence 3456788888999999765
No 18
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.86 E-value=8.6 Score=17.75 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=19.7
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMV 75 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlV 75 (103)
.-|...+....|...+.|++|..+
T Consensus 6 k~~~C~~C~k~f~~~~~L~~H~~~ 29 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIRLRSHIRE 29 (35)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHH
T ss_pred CCeECCCCcchhCCHHHHHHHHHH
Confidence 456667788899999999999875
No 19
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=31.73 E-value=29 Score=21.96 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=14.4
Q ss_pred eEEEEecCccccCCccccCCCCccceeEEEEECC
Q 034128 28 VLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSP 61 (103)
Q Consensus 28 ~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~ 61 (103)
.|-|+|+- | +||+++|-.+
T Consensus 26 NVfIEDDq--------------G-~HFRlVVR~~ 44 (87)
T 2hjj_A 26 NITLEDDQ--------------G-SHFRLVVRDT 44 (87)
T ss_dssp TEEEESCS--------------S-SCCEEEEECS
T ss_pred cceeecCC--------------C-CeEEEEEEcC
Confidence 47788873 3 8999999853
No 20
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.46 E-value=35 Score=14.30 Aligned_cols=18 Identities=17% Similarity=0.205 Sum_probs=14.8
Q ss_pred ECCCCCCCCHHHHHHHHH
Q 034128 59 VSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 59 vS~~F~G~s~l~RhrlVy 76 (103)
....|...+.|.+|..+.
T Consensus 8 C~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 8 CDKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCCCCCTTTHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHh
Confidence 456899999999998765
No 21
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.17 E-value=10 Score=17.65 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=19.3
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlVy 76 (103)
.-|...+....|...+.|++|+.+.
T Consensus 8 ~~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTLKSHKLLH 32 (36)
T ss_dssp SSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred CCeecCcCCCCcCchHHHHHHHHHh
Confidence 3455556778999999999998764
No 22
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.07 E-value=10 Score=16.49 Aligned_cols=19 Identities=5% Similarity=0.121 Sum_probs=14.6
Q ss_pred EEECCCCCCCCHHHHHHHH
Q 034128 57 KIVSPKFEGKNLVNRHRMV 75 (103)
Q Consensus 57 ~IvS~~F~G~s~l~RhrlV 75 (103)
......|...+.|.+|+.+
T Consensus 7 ~~C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvh_A 7 SLCPQRSRDFSAMTKHLRT 25 (27)
T ss_dssp SSSSCEESSHHHHHHHHHH
T ss_pred CCcChhhCCHHHHHHHHHH
Confidence 3455678999999999764
No 23
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=29.39 E-value=40 Score=14.26 Aligned_cols=18 Identities=6% Similarity=-0.055 Sum_probs=14.5
Q ss_pred ECCCCCCCCHHHHHHHHH
Q 034128 59 VSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 59 vS~~F~G~s~l~RhrlVy 76 (103)
....|...+.|.+|..+.
T Consensus 8 C~k~f~~~~~l~~H~~~h 25 (30)
T 1klr_A 8 CEFRSADSSNLKTHIKTK 25 (30)
T ss_dssp SSCCCSCSHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHH
Confidence 456899999999998754
No 24
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=35.40 E-value=11 Score=16.42 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=16.1
Q ss_pred EEEEECCCCCCCCHHHHHHHHH
Q 034128 55 DLKIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 55 ~i~IvS~~F~G~s~l~RhrlVy 76 (103)
........|...+.|++|..+.
T Consensus 5 ~C~~C~k~f~~~~~l~~H~~~h 26 (30)
T 2lvr_A 5 VCIHCQRQFADPGALQRHVRIH 26 (30)
Confidence 3345567888999999997654
No 25
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=29.12 E-value=1.1e+02 Score=19.48 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=22.8
Q ss_pred CCcchhhHHHHHHHHHHhcCCC--ceEEEEe
Q 034128 5 GANAVIARAMRMETKLRSALEA--TVLEIDD 33 (103)
Q Consensus 5 ~~~~~~~~~~~I~~~L~~~l~~--~~v~V~d 33 (103)
+.+.++.++..+.+.|.+.|+. ..|+..-
T Consensus 14 ~~C~~~~Ra~~laqeLl~tF~~~l~~v~l~P 44 (104)
T 2oka_A 14 TQCQWLLRAAWLAQELLSTFADDLGKVCLEP 44 (104)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTTCSEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHcCcccceEEEEe
Confidence 4577899999999999999987 4555443
No 26
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.47 E-value=19 Score=16.86 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCCC-CHHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGK-NLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~IvS~~F~G~-s~l~RhrlVy 76 (103)
.-|...+....|... +.|++|..+.
T Consensus 8 k~~~C~~C~k~f~~~~~~L~~H~~~H 33 (37)
T 2elp_A 8 RAMKCPYCDFYFMKNGSDLQRHIWAH 33 (37)
T ss_dssp CCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred CCeECCCCChhhccCHHHHHHHHHhc
Confidence 456667788899999 9999998765
No 27
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=28.40 E-value=1.2e+02 Score=19.43 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=21.9
Q ss_pred CCcchhhHHHHHHHHHHhcCCCceEEEE
Q 034128 5 GANAVIARAMRMETKLRSALEATVLEID 32 (103)
Q Consensus 5 ~~~~~~~~~~~I~~~L~~~l~~~~v~V~ 32 (103)
+.+.++.++..+.+.|.+.|+..--+|.
T Consensus 12 ~~C~w~~Ra~~laqeLl~tF~~~l~~v~ 39 (105)
T 2p0g_A 12 RQCNWMLRSAWLSQELLHTFSEEIEYVA 39 (105)
T ss_dssp TTTTCHHHHHHHHHHHHHHTTTTEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHcCcccceEE
Confidence 4577899999999999999998433333
No 28
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=27.85 E-value=90 Score=19.98 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=23.1
Q ss_pred CCcchhhHHHHHHHHHHhcCCC--ceEEEEec
Q 034128 5 GANAVIARAMRMETKLRSALEA--TVLEIDDV 34 (103)
Q Consensus 5 ~~~~~~~~~~~I~~~L~~~l~~--~~v~V~d~ 34 (103)
+.+.++.++..+.+.|.+.|+. ..|...-.
T Consensus 16 ~~C~~~~Ra~~laqeLl~tF~~~l~~V~l~P~ 47 (105)
T 2fa8_A 16 TQCNWLLRAGWMAQEILQTFASDIGEVSLIPS 47 (105)
T ss_dssp TTTTCHHHHHHHHHHHHHHHGGGCSEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCcccceEEEEcC
Confidence 4567889999999999999987 45555433
No 29
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=27.58 E-value=1.1e+02 Score=19.11 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=22.2
Q ss_pred CCcchhhHHHHHHHHHHhcCCCc-eEEEE
Q 034128 5 GANAVIARAMRMETKLRSALEAT-VLEID 32 (103)
Q Consensus 5 ~~~~~~~~~~~I~~~L~~~l~~~-~v~V~ 32 (103)
+.+.++.++..+++.|.+.||.. .|++.
T Consensus 11 ~~C~y~~ra~~laqeLl~~Fp~~l~V~~~ 39 (96)
T 2npb_A 11 GACGYKPKYLQLKEKLEHEFPGCLDICGE 39 (96)
T ss_dssp CCSCHHHHHHHHHHHHHHHSBTTEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHhCCcceEEEEE
Confidence 46778999999999999999873 44444
No 30
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.15 E-value=14 Score=17.22 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=20.1
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlVy 76 (103)
.-|...+....|...+.|++|+.+.
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2els_A 8 KIFTCEYCNKVFKFKHSLQAHLRIH 32 (36)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHH
T ss_pred CCEECCCCCceeCCHHHHHHHHHHh
Confidence 4566667788999999999998764
No 31
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=27.05 E-value=13 Score=19.04 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=20.9
Q ss_pred ccceeEEEEECCCCCCCCHHHHHH
Q 034128 50 GETHFDLKIVSPKFEGKNLVNRHR 73 (103)
Q Consensus 50 ~esHf~i~IvS~~F~G~s~l~Rhr 73 (103)
||.-|........|.-.+.|++|+
T Consensus 5 gekp~~C~~CgK~F~~~s~L~~H~ 28 (36)
T 1fv5_A 5 KPARFMCLPCGIAFSSPSTLEAHQ 28 (36)
T ss_dssp SCCCCEETTTTEECSCHHHHHHHH
T ss_pred CccCeECCCCCCccCCHhHccCcC
Confidence 456788888889999999999998
No 32
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.96 E-value=13 Score=16.22 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=15.1
Q ss_pred EEECCCCCCCCHHHHHHHHH
Q 034128 57 KIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 57 ~IvS~~F~G~s~l~RhrlVy 76 (103)
.+....|...+.|.+|..+.
T Consensus 6 ~~C~k~f~~~~~l~~H~~~H 25 (29)
T 2lvt_A 6 VMCGKAFTQASSLIAHVRQH 25 (29)
Confidence 34567788899999997654
No 33
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=26.91 E-value=45 Score=17.13 Aligned_cols=19 Identities=42% Similarity=0.613 Sum_probs=14.5
Q ss_pred CCCCcchhhHHHHHHHHHH
Q 034128 3 SRGANAVIARAMRMETKLR 21 (103)
Q Consensus 3 ~~~~~~~~~~~~~I~~~L~ 21 (103)
.+|++++.++..+++++|.
T Consensus 2 ~~g~nTIGaRLnRvE~k~t 20 (31)
T 3hfe_A 2 ARGSNTIGARLNRVEDKVT 20 (31)
T ss_dssp ---CCSHHHHHHHHHHHHH
T ss_pred CcCcchHHHHHHHHHHHHH
Confidence 4788999999999999985
No 34
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=26.25 E-value=2e+02 Score=21.30 Aligned_cols=44 Identities=9% Similarity=-0.011 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCC
Q 034128 12 RAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKF 63 (103)
Q Consensus 12 ~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F 63 (103)
..++|++.|+..+|...|.+...+.. |-+.-.|.+++.|++|..
T Consensus 45 ~~~~l~~~~~~~~p~~~v~~fGS~~~--------g~~~~~SDiDl~v~~~~~ 88 (323)
T 3nyb_A 45 TISTIREAVKQLWPDADLHVFGSYST--------DLYLPGSDIDCVVTSELG 88 (323)
T ss_dssp HHHHHHHHHHTTCTTCCEEEESTTTT--------TCCCTTSCEEEEECSSCC
T ss_pred HHHHHHHHHHHHCCCCEEEEeCcccc--------CCCCCCCCceEEEecCCC
Confidence 45778888888888889999987632 211123899999999874
No 35
>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A {Pyrococcus horikoshii}
Probab=26.20 E-value=1.3e+02 Score=19.85 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCCceEEEEe
Q 034128 13 AMRMETKLRSALEATVLEIDD 33 (103)
Q Consensus 13 ~~~I~~~L~~~l~~~~v~V~d 33 (103)
.+++.+.|.+-||+..+++.+
T Consensus 20 ~eKV~~Al~nifp~~~i~~~~ 40 (138)
T 3d7a_A 20 IRKVKKAMLNLIPGLQFEAFD 40 (138)
T ss_dssp HHHHHHHHHHHSTTCEEEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEe
Confidence 578999999999988888776
No 36
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=25.61 E-value=22 Score=16.84 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=19.2
Q ss_pred ceeEEEE--ECCCCCCCCHHHHHHHHH
Q 034128 52 THFDLKI--VSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~I--vS~~F~G~s~l~RhrlVy 76 (103)
.-|...+ ....|...+.|++|..+.
T Consensus 7 k~~~C~~~~C~k~f~~~~~L~~H~~~H 33 (37)
T 1va1_A 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33 (37)
T ss_dssp CCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence 4455554 678999999999998764
No 37
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.60 E-value=12 Score=17.82 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=19.7
Q ss_pred ceeEEEEECCCCCCCCHHHHH-HHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRH-RMV 75 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~Rh-rlV 75 (103)
.-|........|...+.|++| +.+
T Consensus 8 k~~~C~~C~k~f~~~~~L~~H~~~~ 32 (37)
T 2elm_A 8 HLYYCSQCHYSSITKNCLKRHVIQK 32 (37)
T ss_dssp CEEECSSSSCEEECHHHHHHHHHHH
T ss_pred cCeECCCCCcccCCHHHHHHHHHHH
Confidence 457777788999999999999 654
No 38
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.57 E-value=35 Score=14.43 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=14.2
Q ss_pred ECCCCCCCCHHHHHHHHH
Q 034128 59 VSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 59 vS~~F~G~s~l~RhrlVy 76 (103)
....|...+.|.+|..+.
T Consensus 8 C~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 8 CTRAFARQEHLKRHYRSH 25 (29)
T ss_dssp TCCBCSSHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHh
Confidence 356799999999998763
No 39
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=25.05 E-value=48 Score=16.25 Aligned_cols=15 Identities=27% Similarity=0.700 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHH
Q 034128 67 NLVNRHRMVYQVLSD 81 (103)
Q Consensus 67 s~l~RhrlVy~~L~~ 81 (103)
++-+||+.+.++|.+
T Consensus 7 sL~EkHkILHrLLQ~ 21 (26)
T 3bej_E 7 SLTERHKILHRLLQE 21 (26)
T ss_pred hHHHHHHHHHHHHHc
Confidence 577899999999875
No 40
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.65 E-value=16 Score=16.85 Aligned_cols=25 Identities=16% Similarity=-0.081 Sum_probs=20.3
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlVy 76 (103)
.-|...+....|...+.|.+|+.+.
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2elt_A 8 KPYKCPQCSYASAIKANLNVHLRKH 32 (36)
T ss_dssp CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHc
Confidence 4566777888999999999998764
No 41
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.46 E-value=7.6 Score=16.98 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=14.5
Q ss_pred EEEECCCCCCCCHHHHHHHH
Q 034128 56 LKIVSPKFEGKNLVNRHRMV 75 (103)
Q Consensus 56 i~IvS~~F~G~s~l~RhrlV 75 (103)
..+....|...+.|.+|+.+
T Consensus 6 C~~C~k~f~~~~~l~~H~~~ 25 (28)
T 2kvf_A 6 CSVCGKRFSLKHQMETHYRV 25 (28)
T ss_dssp CSSSCCEESCHHHHHHHHTT
T ss_pred CCCCCcccCCHHHHHHHHHh
Confidence 33455678889999999753
No 42
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=24.09 E-value=42 Score=21.06 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=19.6
Q ss_pred CCcchhhHHHHHHHHHHhcCCCceE
Q 034128 5 GANAVIARAMRMETKLRSALEATVL 29 (103)
Q Consensus 5 ~~~~~~~~~~~I~~~L~~~l~~~~v 29 (103)
|+...|++.++|+++|..+|..+..
T Consensus 1 ~~~~~m~~~~ei~~qi~~a~~~a~F 25 (84)
T 1iio_A 1 GSHMKMGVKEDIRGQIIGALAGADF 25 (84)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTSSS
T ss_pred CCccchhhHHHHHHHHHHHHcCCCC
Confidence 4567789999999999988766543
No 43
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=23.83 E-value=49 Score=21.70 Aligned_cols=37 Identities=27% Similarity=0.198 Sum_probs=22.2
Q ss_pred cCccccCCccccC---CCCccceeEEEEECCCCCCCCHHH
Q 034128 34 VSHKHAGHAAVKD---SNSGETHFDLKIVSPKFEGKNLVN 70 (103)
Q Consensus 34 ~S~~H~gH~~~~~---~~~~esHf~i~IvS~~F~G~s~l~ 70 (103)
.|+.|.||+.... .+-....++|.|+.+.=.|||.|-
T Consensus 3 ~~~~~~~~~~~~~~~~~~m~~~~~ki~vvG~~~~GKSsli 42 (201)
T 2gco_A 3 SSHHHHHHSSGLVPRGSHMAAIRKKLVIVGDGACGKTCLL 42 (201)
T ss_dssp -----CCCCTTCCC-----CCEEEEEEEEESTTSSHHHHH
T ss_pred cccccccccCCcccCCCCCcccceEEEEECCCCCCHHHHH
Confidence 3566777775332 212246899999999999999863
No 44
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.41 E-value=16 Score=17.04 Aligned_cols=25 Identities=12% Similarity=0.289 Sum_probs=20.1
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlVy 76 (103)
.-|...+....|...+.|.+|..+.
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~~~h 32 (37)
T 2elo_A 8 RSYSCPVCEKSFSEDRLIKSHIKTN 32 (37)
T ss_dssp CCCEETTTTEECSSHHHHHHHHHHH
T ss_pred CCcCCCCCCCccCCHHHHHHHHHHH
Confidence 4566667788999999999998764
No 45
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.28 E-value=21 Score=17.59 Aligned_cols=24 Identities=13% Similarity=-0.003 Sum_probs=20.2
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMV 75 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlV 75 (103)
.-|.-.+....|...+.|++|..+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~ 34 (46)
T 2epw_A 11 KPCKCTECGKAFCWKSQLIMHQRT 34 (46)
T ss_dssp CSEECSSSCCEESSSHHHHHHHHH
T ss_pred CCeeCCCCCCccCCHHHHHHHHHH
Confidence 457777788999999999999865
No 46
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=22.99 E-value=9.8 Score=16.52 Aligned_cols=16 Identities=25% Similarity=0.609 Sum_probs=12.7
Q ss_pred CCCCCCCCHHHHHHHH
Q 034128 60 SPKFEGKNLVNRHRMV 75 (103)
Q Consensus 60 S~~F~G~s~l~RhrlV 75 (103)
...|...+.|.+|+.+
T Consensus 11 ~k~f~~~~~l~~H~~~ 26 (29)
T 2ab3_A 11 GRSFNDRRKLNRHKKI 26 (29)
T ss_dssp CEEESSHHHHHHHHGG
T ss_pred cCccCCHHHHHHHHHH
Confidence 4578899999999754
No 47
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=22.97 E-value=26 Score=17.32 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=20.1
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlVy 76 (103)
.-|.-.+....|...+.|++|..+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ely_A 11 KPFKCVECGKGFSRRSALNVHHKLH 35 (46)
T ss_dssp CSBCCSSSCCCBSSTTHHHHHHHHH
T ss_pred CCcccCccCcccCCHHHHHHHHHHc
Confidence 4466667788999999999998764
No 48
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.68 E-value=21 Score=17.66 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlVy 76 (103)
.-|.-.+....|...+.|++|..+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2emp_A 11 KPYMCNECGKAFSVYSSLTTHQVIH 35 (46)
T ss_dssp CSEECSSSCCEESCHHHHHHHHHHH
T ss_pred cCeECCCCCchhCCHHHHHHHHHHc
Confidence 4577777889999999999998765
No 49
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.63 E-value=22 Score=17.35 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMV 75 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlV 75 (103)
.-|...+....|...+.|++|..+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~ 34 (44)
T 2yu5_A 11 NPFKCSKCDRVFTQRNYLVQHERT 34 (44)
T ss_dssp CSEECSSSSCEESSSHHHHHHHHH
T ss_pred CCeECCCCCchhCCHHHHHHHhHh
Confidence 457777888999999999999865
No 50
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.55 E-value=31 Score=15.29 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.0
Q ss_pred ECCCCCCCCHHHHHHHH
Q 034128 59 VSPKFEGKNLVNRHRMV 75 (103)
Q Consensus 59 vS~~F~G~s~l~RhrlV 75 (103)
....|...+.|++|+.+
T Consensus 11 C~k~f~~~~~L~~H~~~ 27 (32)
T 1zfd_A 11 CDKAFVRNHDLIRHKKS 27 (32)
T ss_dssp CCCCBSSSHHHHHHHGG
T ss_pred CCCccCCHHHHHHHHHH
Confidence 45789999999999865
No 51
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.51 E-value=18 Score=16.83 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=20.0
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMV 75 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlV 75 (103)
.-|...+....|...+.|++|..+
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~~~ 31 (36)
T 2elq_A 8 KPFKCSLCEYATRSKSNLKAHMNR 31 (36)
T ss_dssp CSEECSSSSCEESCHHHHHHHHHH
T ss_pred CCccCCCCCchhCCHHHHHHHHHH
Confidence 457777788999999999999765
No 52
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=22.50 E-value=11 Score=17.50 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=19.3
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMV 75 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlV 75 (103)
.-|...+....|...+.|.+|..+
T Consensus 6 k~~~C~~C~k~f~~~~~l~~H~~~ 29 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANCARHLKV 29 (35)
T ss_dssp SCEECSSSCCEESSHHHHHHHHGG
T ss_pred cCeeCCCCCcccCCHHHHHHHHHH
Confidence 456666788899999999999764
No 53
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=22.41 E-value=1.7e+02 Score=19.00 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=39.9
Q ss_pred HhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCC---CCHHHHHHHHHHHHHHHhcCCcceEEEEecCh
Q 034128 21 RSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEG---KNLVNRHRMVYQVLSDELNSGLHALSIVAKTP 97 (103)
Q Consensus 21 ~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G---~s~l~RhrlVy~~L~~~i~~~iHAlsi~t~tp 97 (103)
.+.|+.+.|.|+|.+.. .-+...-=+--|.| .+...-+.....+.+.....++..|.|....|
T Consensus 12 ~as~NNTivtiTD~~G~--------------~i~~~S~G~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~ 77 (117)
T 3r8n_K 12 HASFNNTIVTITDRQGN--------------ALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGP 77 (117)
T ss_dssp EECSSCEEEEEECTTSC--------------CSEEEETGGGSCCGGGGSSHHHHHHHHHHHHHHHTTSCCCEEEEEEECS
T ss_pred EcccCCEEEEEEcCCCC--------------EEEEEcCCccccCCCccCCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCC
Confidence 46789999999999722 11111111123444 34466666666777666666899999998776
No 54
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=22.19 E-value=58 Score=21.53 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=16.4
Q ss_pred ccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Q 034128 50 GETHFDLKIVSPKFEGKNLVNRHRMVYQVLS 80 (103)
Q Consensus 50 ~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~ 80 (103)
.++-+.+..--|.|.|.+.|..=|.+.+.|-
T Consensus 19 ~~~~~~~~p~~P~f~g~t~l~evK~lL~~Wv 49 (124)
T 3vu7_H 19 SDPAGCVRPPAPNLAGAVEFNDVKTLLREWI 49 (124)
T ss_dssp -----------CCCSSSCSHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCccCCCcCHHHHHHHHHHHH
Confidence 4467888888899999999988877666554
No 55
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.14 E-value=22 Score=20.60 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=22.5
Q ss_pred ccceeEEEEECCCCCCCCHHHHHHHHHH
Q 034128 50 GETHFDLKIVSPKFEGKNLVNRHRMVYQ 77 (103)
Q Consensus 50 ~esHf~i~IvS~~F~G~s~l~RhrlVy~ 77 (103)
++.-|........|.-.+.|++|+.+..
T Consensus 10 ~ekpy~C~~CgK~F~~~s~L~~H~r~Ht 37 (66)
T 2epp_A 10 EAGILPCGLCGKVFTDANRLRQHEAQHG 37 (66)
T ss_dssp CCCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred CccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence 3455666678889999999999998864
No 56
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=21.57 E-value=89 Score=18.36 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhcCCCceEEEEec
Q 034128 11 ARAMRMETKLRSALEATVLEIDDV 34 (103)
Q Consensus 11 ~~~~~I~~~L~~~l~~~~v~V~d~ 34 (103)
...++|++.|++.|+...+.|.=+
T Consensus 61 ~i~~~ie~~l~~~~~~~~vtIh~e 84 (94)
T 3byp_A 61 RLCDELERALAQAFPGLQATIHVE 84 (94)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeC
Confidence 456889999999998766665544
No 57
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=21.57 E-value=1.7e+02 Score=18.79 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=28.1
Q ss_pred chhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEE
Q 034128 8 AVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIV 59 (103)
Q Consensus 8 ~~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~Iv 59 (103)
.++....++.+.|.+.|.+..+.+.-.....+ |. ...|+.+-|+
T Consensus 57 ~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~-------gq-~v~HlHiHvi 100 (149)
T 2eo4_A 57 ELAKVVKLVSLGIKDAVKADGLRLLTNIGRSA-------GQ-VIFHLHVHII 100 (149)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCCSGGG-------TC-CSCSCCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEecCcCC-------CC-CcCEEEEEEE
Confidence 34566778888898899888777764432221 11 2367777777
No 58
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=21.45 E-value=73 Score=20.52 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.4
Q ss_pred ccceeEEEEECCCCCCCCHHH
Q 034128 50 GETHFDLKIVSPKFEGKNLVN 70 (103)
Q Consensus 50 ~esHf~i~IvS~~F~G~s~l~ 70 (103)
....|+|.|+.+.=.|||.|-
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli 38 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLL 38 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHH
Confidence 457899999999999999973
No 59
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=20.95 E-value=1.8e+02 Score=18.78 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=22.5
Q ss_pred CCcchhhHHHHHHHHHHhcCCCc--eEEEE
Q 034128 5 GANAVIARAMRMETKLRSALEAT--VLEID 32 (103)
Q Consensus 5 ~~~~~~~~~~~I~~~L~~~l~~~--~v~V~ 32 (103)
+.+..+.++..+.+.|.+.|+.. .|...
T Consensus 21 ~~C~w~lRa~~laqeLl~tF~~~l~eVsL~ 50 (107)
T 3dex_A 21 TQCRWLPRAAWLAQELLTTFETELTELALK 50 (107)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHhcccccceEEEE
Confidence 45778899999999999999987 44444
No 60
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.75 E-value=30 Score=17.14 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=19.9
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlVy 76 (103)
.-|...+....|...+.|++|+.+.
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2eom_A 11 RGHRCSDCGKFFLQASNFIQHRRIH 35 (46)
T ss_dssp SSCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred CCcCCCCCCCeeCChHHHHHHHHHh
Confidence 3455667788999999999998764
No 61
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.68 E-value=28 Score=16.30 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=18.6
Q ss_pred eeEEEE--ECCCCCCCCHHHHHHHHHH
Q 034128 53 HFDLKI--VSPKFEGKNLVNRHRMVYQ 77 (103)
Q Consensus 53 Hf~i~I--vS~~F~G~s~l~RhrlVy~ 77 (103)
-|...+ ....|...+.|++|..+..
T Consensus 6 ~~~C~~~~C~k~f~~~~~L~~H~~~H~ 32 (38)
T 1bhi_A 6 PFLCTAPGCGQRFTNEDHLAVHKHKHE 32 (38)
T ss_dssp CEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred ceECCCCCCCcccCCHHHHHHHHHHhC
Confidence 455553 6678999999999987653
No 62
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.68 E-value=14 Score=16.06 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=13.4
Q ss_pred ECCCCCCCCHHHHHHHH
Q 034128 59 VSPKFEGKNLVNRHRMV 75 (103)
Q Consensus 59 vS~~F~G~s~l~RhrlV 75 (103)
....|...+.|.+|..+
T Consensus 8 C~k~f~~~~~l~~H~~~ 24 (29)
T 1rik_A 8 CPKRFMRSDHLTLHILL 24 (29)
T ss_dssp SSCEESCSHHHHHHHTG
T ss_pred CCchhCCHHHHHHHHHH
Confidence 45678999999999754
No 63
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.66 E-value=22 Score=17.35 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlVy 76 (103)
.-|.-.+....|...+.|++|+.+.
T Consensus 9 k~~~C~~C~k~f~~~~~L~~H~~~H 33 (44)
T 2emx_A 9 KPFGCSCCEKAFSSKSYLLVHQQTH 33 (44)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHHH
T ss_pred cCccCCCCCcccCCHHHHHHHHHHh
Confidence 4577777889999999999998764
No 64
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=20.61 E-value=16 Score=16.96 Aligned_cols=18 Identities=11% Similarity=0.277 Sum_probs=14.8
Q ss_pred ECCCCCCCCHHHHHHHHH
Q 034128 59 VSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 59 vS~~F~G~s~l~RhrlVy 76 (103)
....|...+.|++|..+.
T Consensus 8 C~k~F~~~~~L~~H~~~H 25 (33)
T 1rim_A 8 CPKRFMRSDHLSKHITLH 25 (33)
T ss_dssp SCCCCSSHHHHHHHHHHH
T ss_pred CCchhCCHHHHHHHHHHh
Confidence 456899999999998764
No 65
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.59 E-value=17 Score=15.59 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=14.1
Q ss_pred ECCCCCCCCHHHHHHHHH
Q 034128 59 VSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 59 vS~~F~G~s~l~RhrlVy 76 (103)
....|...+.|.+|..+.
T Consensus 8 C~k~f~~~~~l~~H~~~H 25 (29)
T 2m0f_A 8 CGKQFTTSGNLKRHLRIH 25 (29)
T ss_dssp TSCEESCHHHHHHHHHHH
T ss_pred CCCccCChhHHHHHHHHh
Confidence 345788899999998764
No 66
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.40 E-value=24 Score=17.43 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlVy 76 (103)
.-|.-.+....|...+.|++|+.+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2yu8_A 11 KPYKCNECGKVFTQNSHLARHRRVH 35 (46)
T ss_dssp SSEECSSSCCEESSSHHHHHHTHHH
T ss_pred CCeECCcCCchhCCHHHHHHHHHhc
Confidence 4577777889999999999998765
No 67
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=20.19 E-value=21 Score=17.76 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCCCHHHHHHHHH
Q 034128 52 THFDLKIVSPKFEGKNLVNRHRMVY 76 (103)
Q Consensus 52 sHf~i~IvS~~F~G~s~l~RhrlVy 76 (103)
.-|.-.+....|...+.|++|..+.
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2emj_A 11 KPFECAECGKSFSISSQLATHQRIH 35 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred CCEECCCCCcccCCHHHHHHHHHHh
Confidence 4577777889999999999998764
Done!