BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034131
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SMU7|SRP09_ARATH Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana
GN=SRP9 PE=3 SV=1
Length = 103
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 98/103 (95%)
Query: 1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
MVY+ SWDEFV RSVQL++ADP+STRY MKYRHCDGKLVLKVTDNKECLKFKTDQAQ+AK
Sbjct: 1 MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60
Query: 61 KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
KMEKLNNIFF LMARGPDVDLSEVTGKEQME QPAKKGRGRKQ
Sbjct: 61 KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103
>sp|O04438|SRP09_MAIZE Signal recognition particle 9 kDa protein OS=Zea mays GN=SRP9 PE=3
SV=1
Length = 103
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 84/103 (81%), Positives = 94/103 (91%)
Query: 1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
MVYV SW+EFV RSVQL++ DP +TRY MKYRHC+GKLVLKVTD++ECLKFKTDQAQDAK
Sbjct: 1 MVYVDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAK 60
Query: 61 KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
KMEKLNNIFFALM RGPDVD+SEV+GKEQ E Q AKKGRGR+Q
Sbjct: 61 KMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103
>sp|Q55GL2|SRP09_DICDI Signal recognition particle 9 kDa protein OS=Dictyostelium
discoideum GN=srp9 PE=3 SV=1
Length = 75
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 54/73 (73%)
Query: 2 VYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKK 61
+Y+ WDEF +S QLY+ DP+ TR+ K+RH +GK+VLKVT++ LKF+TD+ D K+
Sbjct: 1 MYIEDWDEFYDKSEQLYRTDPKRTRFSFKFRHVEGKVVLKVTNDTVNLKFQTDKENDFKR 60
Query: 62 MEKLNNIFFALMA 74
++++N++FF L
Sbjct: 61 IDQINSLFFRLTT 73
>sp|P34642|SRP09_CAEEL Signal recognition particle 9 kDa protein OS=Caenorhabditis
elegans GN=ZK512.4 PE=3 SV=1
Length = 76
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
M Y TSWDEF + +L+ A+P+ R+ KY H G+LVLK+TD+ CL++ T+Q QD K
Sbjct: 1 MTYFTSWDEFAKAAERLHSANPEKCRFVTKYNHTKGQLVLKLTDDVVCLQYSTNQLQDVK 60
Query: 61 KMEKLNNIFF 70
K+EKL++
Sbjct: 61 KLEKLSSTLL 70
>sp|P49962|SRP09_MOUSE Signal recognition particle 9 kDa protein OS=Mus musculus GN=Srp9
PE=1 SV=2
Length = 86
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 6 SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
+W+EF + +LY ADP R +KYRH DG L +KVTD+ CL ++TDQAQD KK+EK
Sbjct: 6 TWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKF 65
Query: 66 NNIFFALMA 74
++ LM
Sbjct: 66 HSQLMRLMV 74
>sp|P49458|SRP09_HUMAN Signal recognition particle 9 kDa protein OS=Homo sapiens GN=SRP9
PE=1 SV=2
Length = 86
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%)
Query: 6 SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
+W+EF + +LY ADP R +KYRH DG L +KVTD+ CL +KTDQAQD KK+EK
Sbjct: 6 TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKF 65
Query: 66 NNIFFALMA 74
++ LM
Sbjct: 66 HSQLMRLMV 74
>sp|P21262|SRP09_CANFA Signal recognition particle 9 kDa protein OS=Canis familiaris
GN=SRP9 PE=1 SV=2
Length = 86
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 6 SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
+W+EF + +LY ADP R +KYRH DG L +KVTD+ CL ++TDQAQD KK+EK
Sbjct: 6 TWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVKKIEKF 65
Query: 66 NNIFFALMA 74
++ LM
Sbjct: 66 HSQLMRLMV 74
>sp|Q4R6I6|SRP09_MACFA Signal recognition particle 9 kDa protein OS=Macaca fascicularis
GN=SRP9 PE=3 SV=1
Length = 86
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 6 SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
+W+EF + +LY ADP R +KYRH DG L +KVTD+ CL +KT+QAQD KK+EK
Sbjct: 6 TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTEQAQDVKKIEKF 65
Query: 66 NNIFFALMA 74
++ LM
Sbjct: 66 HSQLMRLMV 74
>sp|Q9VSC1|SRP09_DROME Signal recognition particle 9 kDa protein OS=Drosophila
melanogaster GN=Srp9 PE=3 SV=1
Length = 77
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
MV+V +WD+F +Y A+PQ+ R MKY H G ++LK+TDN +C+++K + D +
Sbjct: 1 MVFVKNWDDFEIAVENMYLANPQNCRLTMKYAHSKGHILLKMTDNVKCVQYKAENMPDLR 60
Query: 61 KMEKLNNIFFALMA 74
K+EK+ + MA
Sbjct: 61 KIEKITSNLVGHMA 74
>sp|O13804|YE07_SCHPO Uncharacterized protein C17H9.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.07 PE=4 SV=1
Length = 120
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYR---HCDGKLVLKVTDNKE--CLKFKTDQ 55
MVY+ + +EF +S L +A P++T+ +KYR L+ K ++ CLK++TD+
Sbjct: 1 MVYLQTVNEFFTQSKSLTEAYPKTTKLSIKYRTNEQSQNYLIAKAFESASGICLKYRTDK 60
Query: 56 AQDAKKMEKLNN 67
A + ++ + N
Sbjct: 61 AAELGRLLLIAN 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,892,157
Number of Sequences: 539616
Number of extensions: 1216698
Number of successful extensions: 2612
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2601
Number of HSP's gapped (non-prelim): 12
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)