Query 034131
Match_columns 103
No_of_seqs 101 out of 125
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 17:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1914_A Signal recognition part 100.0 1.5E-36 5.2E-41 234.6 11.6 80 1-80 147-226 (232)
2 1914_A Signal recognition part 74.9 20 0.00068 27.3 8.5 74 1-77 20-114 (232)
3 4alg_A Bromodomain-containing 72.7 4.2 0.00015 28.3 4.0 50 3-79 88-137 (154)
4 2hc5_A ORF 99, hypothetical pr 62.8 32 0.0011 23.2 8.0 66 8-73 38-108 (117)
5 2kkc_A Sequestosome-1; P62, PB 46.3 24 0.00083 23.4 3.8 38 6-44 43-80 (102)
6 2l7q_A Conserved protein found 46.0 14 0.00049 25.8 2.7 24 23-46 42-65 (124)
7 1wmh_B Partitioning defective- 45.4 26 0.00089 22.8 3.8 33 5-39 28-60 (86)
8 1y88_A Hypothetical protein AF 42.6 44 0.0015 24.5 5.1 51 5-55 15-69 (199)
9 4dx8_A Integrin beta-1-binding 42.0 77 0.0026 22.8 6.1 37 37-73 108-148 (154)
10 2l3b_A Conserved protein found 41.2 15 0.00051 25.9 2.2 24 23-46 43-66 (130)
11 2jpi_A Hypothetical protein; a 39.5 84 0.0029 21.0 6.3 48 34-81 64-111 (118)
12 2ktr_A Sequestosome-1; autopha 38.3 37 0.0013 23.2 3.8 39 5-44 57-95 (117)
13 1k4n_A Protein EC4020, protein 35.9 27 0.00094 25.9 3.0 33 27-59 147-185 (192)
14 1vd2_A Protein kinase C, IOTA 31.8 50 0.0017 21.3 3.5 34 5-39 26-59 (89)
15 4gqo_A LMO0859 protein; virule 31.3 44 0.0015 24.8 3.6 24 5-28 168-191 (433)
16 2cx7_A Sterol carrier protein 29.6 1.2E+02 0.0042 19.9 5.6 28 7-34 5-38 (130)
17 2a6v_A EMP46P; beta sandwich, 29.2 51 0.0018 24.4 3.6 32 18-50 151-183 (226)
18 2al6_A Focal adhesion kinase 1 28.7 1.2E+02 0.0041 23.3 5.8 41 36-76 284-324 (375)
19 1elj_A Maltodextrin-binding pr 28.7 28 0.00097 25.6 2.1 16 5-20 132-147 (381)
20 3ehg_A Sensor kinase (YOCF pro 28.6 1.1E+02 0.0036 18.9 5.5 29 18-47 53-81 (128)
21 1eu8_A Trehalose/maltose bindi 27.9 29 0.00099 25.8 2.0 17 5-21 143-159 (409)
22 1i58_A Chemotaxis protein CHEA 27.8 1E+02 0.0036 20.1 4.7 28 22-49 76-103 (189)
23 3uf8_A Ubiquitin-like protein 25.7 51 0.0017 23.7 2.9 30 33-62 17-46 (209)
24 3ehh_A Sensor kinase (YOCF pro 25.1 1.5E+02 0.0052 19.5 5.6 32 15-47 140-171 (218)
25 2uvj_A TOGB, ABC type periplas 24.5 37 0.0013 25.1 2.1 16 5-20 139-154 (408)
26 3vlv_A ALGQ1; sugar binding pr 24.4 44 0.0015 25.9 2.6 20 4-23 154-173 (502)
27 2w7y_A FCSSBP, probable sugar 24.1 38 0.0013 25.3 2.1 17 5-21 180-196 (430)
28 4aq4_A SN-glycerol-3-phosphate 23.7 51 0.0018 24.0 2.7 18 5-22 148-165 (419)
29 2eob_A 1-phosphatidylinositol- 23.5 1.6E+02 0.0053 19.1 5.8 43 12-54 29-71 (124)
30 4fbn_A 1-phosphatidylinositol 23.3 2.2E+02 0.0074 20.7 6.2 44 12-55 132-175 (246)
31 2vt8_A HPI31, PI31, proteasome 23.3 67 0.0023 22.0 3.1 19 25-43 65-85 (153)
32 3a0y_A Sensor protein; ATP-LID 22.8 1.4E+02 0.0048 18.3 4.7 29 19-47 61-89 (152)
33 2zyo_A Solute-binding protein; 21.6 45 0.0015 24.6 2.0 15 5-19 145-159 (397)
34 3omb_A Extracellular solute-bi 21.5 55 0.0019 25.5 2.6 19 5-23 183-201 (535)
35 2gh9_A Maltose/maltodextrin-bi 21.5 46 0.0016 24.5 2.1 15 5-19 129-143 (386)
36 4dxa_B KREV interaction trappe 21.2 2E+02 0.007 21.3 5.7 32 32-63 277-308 (322)
37 4ew8_A Sensor protein DIVL; si 20.7 2.1E+02 0.007 19.5 5.7 31 19-49 169-199 (268)
38 4hw8_A Bacterial extracellular 20.6 57 0.002 24.3 2.4 20 5-24 165-184 (420)
39 2heu_A Sugar ABC transporter, 20.3 51 0.0017 24.5 2.1 16 5-20 147-162 (401)
40 2b3f_A Glucose-binding protein 20.2 51 0.0017 24.4 2.1 16 5-20 140-155 (400)
41 2gha_A Maltose ABC transporter 20.2 50 0.0017 24.2 2.0 18 5-22 125-142 (382)
42 2i6v_A General secretion pathw 20.1 1.5E+02 0.005 17.5 4.3 34 4-41 51-84 (87)
No 1
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=100.00 E-value=1.5e-36 Score=234.57 Aligned_cols=80 Identities=44% Similarity=0.749 Sum_probs=75.3
Q ss_pred CccccCHHHHHHHHHHHHhhCCCcceEEEeeecCCCeEEEEEecCCceEEEeccchHHHHHHHHHHHHHHHHHhCCCCCC
Q 034131 1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVD 80 (103)
Q Consensus 1 Mvy~~tw~eF~~~s~~Ly~a~P~kTRy~~KYr~~~g~LvLKvTDd~~cLkYkT~ka~dv~rle~l~~~l~~~Ma~~p~~~ 80 (103)
||||+||+||+++|++||+++|.+||||+||+|++|.||||||||.+||||+|++++||+|||+||++||++|++.+++.
T Consensus 147 M~y~~sw~eF~~~s~~Ly~a~P~~tRy~~KY~~~~g~LvLKvTD~~~cLkYrT~ka~dl~rle~l~~~lm~~Ma~~~~~~ 226 (232)
T 1914_A 147 MPQFQTWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKFHSQLMRLMVAKESRN 226 (232)
T ss_dssp ---CCSHHHHHHHHHHHHHHCTTTCEEEEEEETTTTEEEEEEECSSSEEEEEECBGGGHHHHHHHHHHHHHHHHCCCCCC
T ss_pred eeeeCCHHHHHHHHHHHHHhCCCceEEEEEEEcCCceEEEEEeeCCeEEEEECchHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987753
No 2
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=74.87 E-value=20 Score=27.32 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=49.3
Q ss_pred CccccCHHHHHHHHHHHHhhCC--CcceEEEeeec-----------------CCCeEEEEEecCCceEEEeccc-hHHHH
Q 034131 1 MVYVTSWDEFVGRSVQLYKADP--QSTRYCMKYRH-----------------CDGKLVLKVTDNKECLKFKTDQ-AQDAK 60 (103)
Q Consensus 1 Mvy~~tw~eF~~~s~~Ly~a~P--~kTRy~~KYr~-----------------~~g~LvLKvTDd~~cLkYkT~k-a~dv~ 60 (103)
||.+++ ++|+.+-..||+.+- -...+|+|--. .+-.+.+.+||+.. |+.|-- +.|+.
T Consensus 20 MVlLsN-deFL~eLtkLf~~~k~~GSV~lT~KR~~~~~~~~p~k~~~~~~~~~e~~cLIRAT~Gkk--KiSTvV~~~dl~ 96 (232)
T 1914_A 20 MVLLES-EQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRATDGKR--KISTVVSSKEVN 96 (232)
T ss_dssp CCEECH-HHHHHHHHHHHHHTSSSCCEEEEEEEEC------------CCCCCCCCEEEEEEESSSC--EEEEEEETTSHH
T ss_pred eEEeCH-HHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCCcccCCCCCCCCCccEEEEEeCCCc--cEEEEECHHHHH
Confidence 888886 999999999998875 45788888632 11247788888874 666643 35555
Q ss_pred HHH-HHHHHHHHHHhCCC
Q 034131 61 KME-KLNNIFFALMARGP 77 (103)
Q Consensus 61 rle-~l~~~l~~~Ma~~p 77 (103)
+|- .....+-..|.|..
T Consensus 97 ~F~~~Ya~VlKa~M~gLK 114 (232)
T 1914_A 97 KFQMAYSNLLRANMDGLK 114 (232)
T ss_dssp HHHHHHHHHHHHHSCCSB
T ss_pred HHHHHHHHHHHhcccccC
Confidence 665 33344455666653
No 3
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=72.67 E-value=4.2 Score=28.34 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=34.3
Q ss_pred cccCHHHHHHHHHHHHhhCCCcceEEEeeecCCCeEEEEEecCCceEEEeccchHHHHHHHHHHHHHHHHHhCCCCC
Q 034131 3 YVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDV 79 (103)
Q Consensus 3 y~~tw~eF~~~s~~Ly~a~P~kTRy~~KYr~~~g~LvLKvTDd~~cLkYkT~ka~dv~rle~l~~~l~~~Ma~~p~~ 79 (103)
++.+++||..-..++|. .|..|.-.......--..|...|-..++..|..
T Consensus 88 ~Y~s~~ef~~Dv~Lif~---------------------------Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 88 YYWAASECMQDFNTMFT---------------------------NCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp CCSSHHHHHHHHHHHHH---------------------------HHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred CCCCHHHHHHHHHHHHH---------------------------HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCch
Confidence 46788888888887775 566676655555555556667777778777644
No 4
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=62.84 E-value=32 Score=23.22 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhh-CCCcceEEEeeecCCCeEEEEEecCC---ceEEEeccchHH-HHHHHHHHHHHHHHH
Q 034131 8 DEFVGRSVQLYKA-DPQSTRYCMKYRHCDGKLVLKVTDNK---ECLKFKTDQAQD-AKKMEKLNNIFFALM 73 (103)
Q Consensus 8 ~eF~~~s~~Ly~a-~P~kTRy~~KYr~~~g~LvLKvTDd~---~cLkYkT~ka~d-v~rle~l~~~l~~~M 73 (103)
++..++.+.|=.. .+..+.+.+.+....|.+++||.|.. +-=++-.+.+-+ +.+|..+.|.|+..+
T Consensus 38 eel~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e~~Gll~D~~ 108 (117)
T 2hc5_A 38 TNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMTEFLGLFVDEK 108 (117)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEEEECHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCChHHHHHHHHHHHHhhceeecch
Confidence 4445555555443 45678888889999999999999984 556777777776 567777777776433
No 5
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=46.31 E-value=24 Score=23.42 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHhhCCCcceEEEeeecCCCeEEEEEec
Q 034131 6 SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTD 44 (103)
Q Consensus 6 tw~eF~~~s~~Ly~a~P~kTRy~~KYr~~~g~LvLKvTD 44 (103)
|.+++.+....||..-- ..-|++||+..+|-+|-=.+|
T Consensus 43 s~~~L~~~V~~lFp~l~-~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 43 PCERLLSRVAVLFPALR-PGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp HHHHHHHHHHHHCTTSC-SSCEEEEEECTTCCEEEECSH
T ss_pred cHHHHHHHHHHHccccC-CCcEEEEEECCCCCEEEecCH
Confidence 68999999999986433 235999999999977643333
No 6
>2l7q_A Conserved protein found in conjugate transposon; NESG, structural genomics, PSI-biology; NMR {Bacteroides vulgatus}
Probab=46.04 E-value=14 Score=25.79 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.4
Q ss_pred CcceEEEeeecCCCeEEEEEecCC
Q 034131 23 QSTRYCMKYRHCDGKLVLKVTDNK 46 (103)
Q Consensus 23 ~kTRy~~KYr~~~g~LvLKvTDd~ 46 (103)
..|||+|.|=.++|+=.||..|+.
T Consensus 42 ~~t~Y~IRYFQ~dGkG~L~~~~Gt 65 (124)
T 2l7q_A 42 IGTVYTLRYFQPDGKGSLKMEDGT 65 (124)
T ss_dssp SCCCCEEEEECCSSCEEEEETTSC
T ss_pred cccEEEEEEEeecCCeeEEecCCc
Confidence 469999999999999999997764
No 7
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=45.36 E-value=26 Score=22.80 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=27.2
Q ss_pred cCHHHHHHHHHHHHhhCCCcceEEEeeecCCCeEE
Q 034131 5 TSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLV 39 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a~P~kTRy~~KYr~~~g~Lv 39 (103)
.+|+||..-.+.|+.=. ..-|++.|...+|-|+
T Consensus 28 ~~fe~f~~lv~~lh~L~--~~~f~i~Y~D~dGDLl 60 (86)
T 1wmh_B 28 SGFQEFSRLLRAVHQIP--GLDVLLGYTDAHGDLL 60 (86)
T ss_dssp CCHHHHHHHHHHHTTCT--TCCCEEEEECTTSCEE
T ss_pred CCHHHHHHHHHHHcCCC--CCCEEEEEECCCCCEe
Confidence 58999999999999842 3569999999888764
No 8
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=42.58 E-value=44 Score=24.49 Aligned_cols=51 Identities=6% Similarity=-0.042 Sum_probs=37.5
Q ss_pred cCHHHHHHHHHHHHhhCCCcce--EEEeeecCCCeEEEEEecCC--ceEEEeccc
Q 034131 5 TSWDEFVGRSVQLYKADPQSTR--YCMKYRHCDGKLVLKVTDNK--ECLKFKTDQ 55 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a~P~kTR--y~~KYr~~~g~LvLKvTDd~--~cLkYkT~k 55 (103)
-+|.+|++.+..+|++.--.+. .++.|+..+|.+=|=+.++. ++++=|+.+
T Consensus 15 ~~g~~fE~~va~~L~~~Gy~i~~~v~v~~r~~dggIDIIA~k~~~~v~VEvK~r~ 69 (199)
T 1y88_A 15 ENLYFQGHMVARLLEEHGFETKTNVIVQGNCVEQEIDVVAERDGERYMIECKFHN 69 (199)
T ss_dssp -CHHHHHHHHHHHHHTTTCEEEEEEEEECSSSEEEEEEEEEETTEEEEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeecccCCCCCCcEEEEEEECCEEEEEEecccc
Confidence 3799999999999999998864 44588888887766666664 555545444
No 9
>4dx8_A Integrin beta-1-binding protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens} PDB: 4dx9_A
Probab=42.00 E-value=77 Score=22.78 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=29.0
Q ss_pred eEEEEEecCC----ceEEEeccchHHHHHHHHHHHHHHHHH
Q 034131 37 KLVLKVTDNK----ECLKFKTDQAQDAKKMEKLNNIFFALM 73 (103)
Q Consensus 37 ~LvLKvTDd~----~cLkYkT~ka~dv~rle~l~~~l~~~M 73 (103)
.|++|++|+. .|.-|-.++...-..|=...+..+...
T Consensus 108 vla~KT~~~~~~~~~~hv~Qc~s~~~A~~iC~~l~~~f~~~ 148 (154)
T 4dx8_A 108 LLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSV 148 (154)
T ss_dssp EEEEEEECTTSCCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCceEEEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 3799999884 899999999888888776676666543
No 10
>2l3b_A Conserved protein found in conjugate transposon; beta, structural genomics, PSI-biology; NMR {Bacteroides thetaiotaomicron}
Probab=41.19 E-value=15 Score=25.91 Aligned_cols=24 Identities=33% Similarity=0.611 Sum_probs=21.0
Q ss_pred CcceEEEeeecCCCeEEEEEecCC
Q 034131 23 QSTRYCMKYRHCDGKLVLKVTDNK 46 (103)
Q Consensus 23 ~kTRy~~KYr~~~g~LvLKvTDd~ 46 (103)
..|||+|.|=.++|+=+|+..|+.
T Consensus 43 ~~t~Y~IRYFQ~dGkG~L~~~dg~ 66 (130)
T 2l3b_A 43 EETKYFIRYFQPDGAGTLKMSDGT 66 (130)
T ss_dssp SSCCCEEEEECSSCCCEEEETTSC
T ss_pred cccEEEEEEEeecCCeeEEeCCCC
Confidence 469999999999999999997664
No 11
>2jpi_A Hypothetical protein; alpha-helix/beta-sheet, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Pseudomonas aeruginosa}
Probab=39.47 E-value=84 Score=21.03 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=40.8
Q ss_pred CCCeEEEEEecCCceEEEeccchHHHHHHHHHHHHHHHHHhCCCCCCC
Q 034131 34 CDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDL 81 (103)
Q Consensus 34 ~~g~LvLKvTDd~~cLkYkT~ka~dv~rle~l~~~l~~~Ma~~p~~~l 81 (103)
+.|.+.|...++..-+.-....+..|.+|+..+..-+..++.....++
T Consensus 64 p~G~~~l~a~~~~L~i~v~A~d~e~L~~lk~VVa~HL~rFa~re~l~i 111 (118)
T 2jpi_A 64 GDSNCELLAHPDHVLMILNSPDEDSLAHMQNVVADHLQRMANSESLEI 111 (118)
T ss_dssp SSSCEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHHTSTTSSCCC
T ss_pred CCeEEEEEecCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhccCCCcee
Confidence 568888999999988889999999999999999999999987654433
No 12
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=38.26 E-value=37 Score=23.19 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=28.5
Q ss_pred cCHHHHHHHHHHHHhhCCCcceEEEeeecCCCeEEEEEec
Q 034131 5 TSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTD 44 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a~P~kTRy~~KYr~~~g~LvLKvTD 44 (103)
.++++|.+....||..-. ..-|.+||+..+|-+|-=.+|
T Consensus 57 ~s~~~L~~kV~~lFp~L~-~~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALR-PGGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp CHHHHHHHHHHHHCTTSC-SSCEEEEEECTTCCEEEECSH
T ss_pred CCHHHHHHHHHHHccccC-CCcEEEEEECCCCCEEEecCH
Confidence 378899999999995322 234999999999977643333
No 13
>1k4n_A Protein EC4020, protein YECM; structural genomics, A NEW fold of protein, PSI, protein structure initiative; 1.60A {Escherichia coli} SCOP: d.32.1.5
Probab=35.86 E-value=27 Score=25.89 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=23.4
Q ss_pred EEEeeecCCC------eEEEEEecCCceEEEeccchHHH
Q 034131 27 YCMKYRHCDG------KLVLKVTDNKECLKFKTDQAQDA 59 (103)
Q Consensus 27 y~~KYr~~~g------~LvLKvTDd~~cLkYkT~ka~dv 59 (103)
+.+|.+.|.| .-+|-++|+.+|+||---+..++
T Consensus 147 ikvK~S~Pkge~ErL~NPTlA~~~~~i~IKfHP~sLk~I 185 (192)
T 1k4n_A 147 ISVKTSSPKGEHERLPNPTLAVTDGKTTIKFHPWSIEEI 185 (192)
T ss_dssp CEEEEC-------CCCCCCEEEESSSCEEEEESSCHHHH
T ss_pred cEEEeeCCCccCCcCCCCCEEEccCCEEEEECCcCHHHH
Confidence 7888888766 45777889999999987776655
No 14
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=31.82 E-value=50 Score=21.33 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=26.8
Q ss_pred cCHHHHHHHHHHHHhhCCCcceEEEeeecCCCeEE
Q 034131 5 TSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLV 39 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a~P~kTRy~~KYr~~~g~Lv 39 (103)
-+|+++.+.-.++|.-.+ ..-|++||...+|..+
T Consensus 26 i~~~~L~~kv~~~~~~~~-~~~f~lky~DEeGD~i 59 (89)
T 1vd2_A 26 ISFEGLCNEVRDMCSFDN-EQLFTMKWIDEEGDPC 59 (89)
T ss_dssp CCHHHHHHHHHHHTTCCS-SCCEEEEECCSSSCCE
T ss_pred CCHHHHHHHHHHHhCCCC-CCeEEEEEECCCCCcc
Confidence 378999999999988653 4668999998877654
No 15
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=31.28 E-value=44 Score=24.82 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=20.1
Q ss_pred cCHHHHHHHHHHHHhhCCCcceEE
Q 034131 5 TSWDEFVGRSVQLYKADPQSTRYC 28 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a~P~kTRy~ 28 (103)
+||+||++.++.|-.+.+...-+.
T Consensus 168 ~Twde~~~~~~~l~~~~~~~~~~~ 191 (433)
T 4gqo_A 168 KTYSEALEVGKKLKAKYPDKVLWA 191 (433)
T ss_dssp CBHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCceec
Confidence 699999999999999988754443
No 16
>2cx7_A Sterol carrier protein 2; sterol transfer, SCP-2, RSGI, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 1wfr_A
Probab=29.59 E-value=1.2e+02 Score=19.94 Aligned_cols=28 Identities=0% Similarity=-0.098 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhCCC------cceEEEeeecC
Q 034131 7 WDEFVGRSVQLYKADPQ------STRYCMKYRHC 34 (103)
Q Consensus 7 w~eF~~~s~~Ly~a~P~------kTRy~~KYr~~ 34 (103)
++||.++-.+.+.++|. +..-++.|.-.
T Consensus 5 S~ew~~~~~~~ln~~~~l~~~~k~~~~~~~~~i~ 38 (130)
T 2cx7_A 5 TEAWAQAYCRKLNESEAYRKAASTWEGSLALAVR 38 (130)
T ss_dssp SHHHHHHHHHHHHTCHHHHHHTTTCEEEEEEEEC
T ss_pred cHHHHHHHHHHHhcCHHHHHHHcCCcceEEEEEe
Confidence 68899999999999993 43346666553
No 17
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A
Probab=29.18 E-value=51 Score=24.35 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=23.0
Q ss_pred HhhCCCcceEEEeee-cCCCeEEEEEecCCceEE
Q 034131 18 YKADPQSTRYCMKYR-HCDGKLVLKVTDNKECLK 50 (103)
Q Consensus 18 y~a~P~kTRy~~KYr-~~~g~LvLKvTDd~~cLk 50 (103)
|+..+.-||+.++|. ..++.|.|-+ |+..|.+
T Consensus 151 ~rn~~~~t~~ri~Y~~~~~~~l~v~i-d~~~Cf~ 183 (226)
T 2a6v_A 151 YQDSMVPSTLRLTYNPLDNHLLKLQM-DNRVCFQ 183 (226)
T ss_dssp CSSCSSCEEEEEEEEGGGTSEEEEEE-TTEEEEE
T ss_pred ccCCCCCEEEEEEEEccCCCEEEEEE-cCCeeEE
Confidence 344566689999997 4567777766 6788976
No 18
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=28.71 E-value=1.2e+02 Score=23.29 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=35.3
Q ss_pred CeEEEEEecCCceEEEeccchHHHHHHHHHHHHHHHHHhCC
Q 034131 36 GKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARG 76 (103)
Q Consensus 36 g~LvLKvTDd~~cLkYkT~ka~dv~rle~l~~~l~~~Ma~~ 76 (103)
..+.|++.++..++.|.++...+...|..|+....++++..
T Consensus 284 ~~~~I~v~~~~~~~~f~~~t~~~a~~i~~Li~gY~rl~~~~ 324 (375)
T 2al6_A 284 GMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGA 324 (375)
T ss_dssp EEEEEEETTCSSCEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred eEEEEEECCCCCcEEEEeCCHHHHHHHHHHHhhheEEecCC
Confidence 35777878878999999999888999999999999999954
No 19
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=28.68 E-value=28 Score=25.60 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=13.8
Q ss_pred cCHHHHHHHHHHHHhh
Q 034131 5 TSWDEFVGRSVQLYKA 20 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a 20 (103)
+||+||++.++.|-.+
T Consensus 132 ~Twdel~~~a~~l~~~ 147 (381)
T 1elj_A 132 KTFDEMKAIMEKYYDP 147 (381)
T ss_dssp SSHHHHHHHHHHHCBG
T ss_pred ccHHHHHHHHHHhcCC
Confidence 6999999999999543
No 20
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=28.61 E-value=1.1e+02 Score=18.90 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=22.5
Q ss_pred HhhCCCcceEEEeeecCCCeEEEEEecCCc
Q 034131 18 YKADPQSTRYCMKYRHCDGKLVLKVTDNKE 47 (103)
Q Consensus 18 y~a~P~kTRy~~KYr~~~g~LvLKvTDd~~ 47 (103)
+...+. .++.+..+...+.+.|.|.||+.
T Consensus 53 ~k~~~~-~~i~i~~~~~~~~~~i~V~D~G~ 81 (128)
T 3ehg_A 53 VKHSQA-KTCRVDIQQLWKEVVITVSDDGT 81 (128)
T ss_dssp HHHTCC-SEEEEEEEEETTEEEEEEEESSC
T ss_pred HhcCCC-cEEEEEEEEeCCEEEEEEEECCc
Confidence 344443 68888888888999999999974
No 21
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=27.86 E-value=29 Score=25.76 Aligned_cols=17 Identities=18% Similarity=0.560 Sum_probs=15.2
Q ss_pred cCHHHHHHHHHHHHhhC
Q 034131 5 TSWDEFVGRSVQLYKAD 21 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a~ 21 (103)
+||+||++.++.|-...
T Consensus 143 ~Twdel~~~a~~l~~~~ 159 (409)
T 1eu8_A 143 ETWQELVEMAQKIQSGE 159 (409)
T ss_dssp SBHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 69999999999998765
No 22
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=27.78 E-value=1e+02 Score=20.07 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=24.4
Q ss_pred CCcceEEEeeecCCCeEEEEEecCCceE
Q 034131 22 PQSTRYCMKYRHCDGKLVLKVTDNKECL 49 (103)
Q Consensus 22 P~kTRy~~KYr~~~g~LvLKvTDd~~cL 49 (103)
|...++.+.....++.++|.|.||+.-+
T Consensus 76 ~~~~~I~I~~~~~~~~~~i~V~D~G~Gi 103 (189)
T 1i58_A 76 PPIGTLILSARHEGNNVVIEVEDDGRGI 103 (189)
T ss_dssp CSSEEEEEEEEEETTEEEEEEEECSSCC
T ss_pred CCCCeEEEEEEecCCEEEEEEEeCCCCc
Confidence 7778999999888999999999998654
No 23
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=25.65 E-value=51 Score=23.70 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=24.7
Q ss_pred cCCCeEEEEEecCCceEEEeccchHHHHHH
Q 034131 33 HCDGKLVLKVTDNKECLKFKTDQAQDAKKM 62 (103)
Q Consensus 33 ~~~g~LvLKvTDd~~cLkYkT~ka~dv~rl 62 (103)
++...|.|||.++...+.|+.....-+++|
T Consensus 17 ~~~~~i~ikv~~~~~~v~~~i~~~~~l~kl 46 (209)
T 3uf8_A 17 KPETHINLKVSDGSSEIFFKIKKTTPLRRL 46 (209)
T ss_dssp -CCSEEEEEEECSSCEEEEEEETTSCTHHH
T ss_pred CCCCcEEEEEEcCCCEEEEEEeeCCHHHHH
Confidence 467899999999888899999888866666
No 24
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=25.10 E-value=1.5e+02 Score=19.51 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=24.1
Q ss_pred HHHHhhCCCcceEEEeeecCCCeEEEEEecCCc
Q 034131 15 VQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKE 47 (103)
Q Consensus 15 ~~Ly~a~P~kTRy~~KYr~~~g~LvLKvTDd~~ 47 (103)
...+...|. .++.+......+.++|.|.||+.
T Consensus 140 ~Na~k~~~~-~~i~i~~~~~~~~~~i~V~D~G~ 171 (218)
T 3ehh_A 140 TNVVKHSQA-KTCRVDIQQLWKEVVITVSDDGT 171 (218)
T ss_dssp HHHHHHTCC-SEEEEEEEEETTEEEEEEEESSC
T ss_pred HHHHHhCCC-CEEEEEEEEeCCEEEEEEEECCc
Confidence 333445554 68888888888999999999974
No 25
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=24.49 E-value=37 Score=25.13 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=14.4
Q ss_pred cCHHHHHHHHHHHHhh
Q 034131 5 TSWDEFVGRSVQLYKA 20 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a 20 (103)
+||+||++.++.|-..
T Consensus 139 ~Twdel~~~a~~l~~~ 154 (408)
T 2uvj_A 139 KTWDELLAAGKVFKEK 154 (408)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 6999999999999875
No 26
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=24.42 E-value=44 Score=25.94 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=18.3
Q ss_pred ccCHHHHHHHHHHHHhhCCC
Q 034131 4 VTSWDEFVGRSVQLYKADPQ 23 (103)
Q Consensus 4 ~~tw~eF~~~s~~Ly~a~P~ 23 (103)
.+||+||++.++.|-.++|.
T Consensus 154 P~T~del~~~~~~~k~~~p~ 173 (502)
T 3vlv_A 154 PQTVDELYTVLKAFKEKDPN 173 (502)
T ss_dssp CCBHHHHHHHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHHhCCC
Confidence 47999999999999999996
No 27
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=24.12 E-value=38 Score=25.34 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=14.5
Q ss_pred cCHHHHHHHHHHHHhhC
Q 034131 5 TSWDEFVGRSVQLYKAD 21 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a~ 21 (103)
+||+||++.++.|-.+.
T Consensus 180 ~Twdel~~~~~~l~~~g 196 (430)
T 2w7y_A 180 NTWDDFTQAMASIRKQD 196 (430)
T ss_dssp CSHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 69999999999987644
No 28
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=23.70 E-value=51 Score=24.04 Aligned_cols=18 Identities=11% Similarity=0.423 Sum_probs=15.4
Q ss_pred cCHHHHHHHHHHHHhhCC
Q 034131 5 TSWDEFVGRSVQLYKADP 22 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a~P 22 (103)
.||+||++.++.|-.+.+
T Consensus 148 ~Twde~~~~a~~~~~~g~ 165 (419)
T 4aq4_A 148 KTWQDLADYAAKLKASGM 165 (419)
T ss_dssp SBHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 799999999999877654
No 29
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}
Probab=23.46 E-value=1.6e+02 Score=19.06 Aligned_cols=43 Identities=7% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHHhhCCCcceEEEeeecCCCeEEEEEecCCceEEEecc
Q 034131 12 GRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTD 54 (103)
Q Consensus 12 ~~s~~Ly~a~P~kTRy~~KYr~~~g~LvLKvTDd~~cLkYkT~ 54 (103)
+.|+.|+...|..==|.+.-+...|..+|-|-.+..+..|+..
T Consensus 29 ~eAe~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~~~v~H~~I~ 71 (124)
T 2eob_A 29 GEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKHCRIN 71 (124)
T ss_dssp HHHHHHHHHCCSSSEEEEECCTTSSCEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHhcCCCCCEEEEEecCCCCCEEEEEEeCCeEEEEEEE
Confidence 5788888887655667777766567777777666555555443
No 30
>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*
Probab=23.27 E-value=2.2e+02 Score=20.70 Aligned_cols=44 Identities=7% Similarity=0.178 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCCcceEEEeeecCCCeEEEEEecCCceEEEeccc
Q 034131 12 GRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQ 55 (103)
Q Consensus 12 ~~s~~Ly~a~P~kTRy~~KYr~~~g~LvLKvTDd~~cLkYkT~k 55 (103)
+.|+.|+...|..==|.+.-+...|..+|+|-.+..+.-|+...
T Consensus 132 ~~Ae~lL~~~~~~G~FLVR~s~~~g~y~Lsv~~~~~v~H~~I~~ 175 (246)
T 4fbn_A 132 AQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQ 175 (246)
T ss_dssp HHHHHHHHTSCCTTEEEEEECSSTTEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHhhCCCCCeEEEEecCCCCCEEEEEEeCCCeEEEEEEe
Confidence 56889998888656677776666688888888777666666554
No 31
>2vt8_A HPI31, PI31, proteasome inhibitor PI31 subunit; polymorphism, hydrolase inhibitor; 2.6A {Homo sapiens}
Probab=23.25 E-value=67 Score=22.05 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=15.4
Q ss_pred ceEEEeeecCCC--eEEEEEe
Q 034131 25 TRYCMKYRHCDG--KLVLKVT 43 (103)
Q Consensus 25 TRy~~KYr~~~g--~LvLKvT 43 (103)
--|++.|.|+.. ..+||+-
T Consensus 65 ~~Y~f~Y~h~~~~~~~lLk~~ 85 (153)
T 2vt8_A 65 DLYVLRYEYKDGSRKLLVKAI 85 (153)
T ss_dssp SEEEEEEEESCC-CEEEEEEE
T ss_pred CeEEEEeccCCCCCeEEEEEE
Confidence 579999999876 7777765
No 32
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=22.77 E-value=1.4e+02 Score=18.29 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=22.8
Q ss_pred hhCCCcceEEEeeecCCCeEEEEEecCCc
Q 034131 19 KADPQSTRYCMKYRHCDGKLVLKVTDNKE 47 (103)
Q Consensus 19 ~a~P~kTRy~~KYr~~~g~LvLKvTDd~~ 47 (103)
.+.|...++.+..+...+.+.|.|.|++.
T Consensus 61 ~~~~~~~~I~i~~~~~~~~~~i~i~D~G~ 89 (152)
T 3a0y_A 61 EATGENGKIKITSEDMYTKVRVSVWNSGP 89 (152)
T ss_dssp HHHCTTCEEEEEEEECSSEEEEEEEEESC
T ss_pred HhcCCCCEEEEEEEecCCEEEEEEEeCCC
Confidence 34455678888888888899999999864
No 33
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=21.63 E-value=45 Score=24.58 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=13.4
Q ss_pred cCHHHHHHHHHHHHh
Q 034131 5 TSWDEFVGRSVQLYK 19 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~ 19 (103)
+||+||++.++.|-.
T Consensus 145 ~Twdel~~~~~~l~~ 159 (397)
T 2zyo_A 145 ATYDELFQYAKANNK 159 (397)
T ss_dssp SBHHHHHHHHHHHCB
T ss_pred CCHHHHHHHHHHHhc
Confidence 699999999999964
No 34
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=21.51 E-value=55 Score=25.52 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=17.7
Q ss_pred cCHHHHHHHHHHHHhhCCC
Q 034131 5 TSWDEFVGRSVQLYKADPQ 23 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a~P~ 23 (103)
+||+||++.++.|-.++|.
T Consensus 183 ~Twdel~~~~~~~k~~~p~ 201 (535)
T 3omb_A 183 TTWDELENVLKAFKTQDPN 201 (535)
T ss_dssp CBHHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHhhCCC
Confidence 6999999999999999886
No 35
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=21.51 E-value=46 Score=24.45 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=13.1
Q ss_pred cCHHHHHHHHHHHHh
Q 034131 5 TSWDEFVGRSVQLYK 19 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~ 19 (103)
+||+||++.++.|-.
T Consensus 129 ~Twdel~~~~~~l~~ 143 (386)
T 2gh9_A 129 RTWEEFLALAQKLTT 143 (386)
T ss_dssp SSHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHhhh
Confidence 699999999999853
No 36
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=21.16 E-value=2e+02 Score=21.33 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=26.1
Q ss_pred ecCCCeEEEEEecCCceEEEeccchHHHHHHH
Q 034131 32 RHCDGKLVLKVTDNKECLKFKTDQAQDAKKME 63 (103)
Q Consensus 32 r~~~g~LvLKvTDd~~cLkYkT~ka~dv~rle 63 (103)
......++|++-|+..++.|.|.++-++.+|.
T Consensus 277 s~~~~~f~i~~~~~~~~~~~~t~q~~~i~~li 308 (322)
T 4dxa_B 277 GDTDTCFQIHSMENKMSFIVHTKQAGLVVKLL 308 (322)
T ss_dssp CSSTTEEEEEESSSCCEEEEECTTHHHHHHHH
T ss_pred cCCCCEEEEEECCCCccEEEEeCcHHHHHHHH
Confidence 35667899998888889999999998777663
No 37
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=20.71 E-value=2.1e+02 Score=19.45 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.3
Q ss_pred hhCCCcceEEEeeecCCCeEEEEEecCCceE
Q 034131 19 KADPQSTRYCMKYRHCDGKLVLKVTDNKECL 49 (103)
Q Consensus 19 ~a~P~kTRy~~KYr~~~g~LvLKvTDd~~cL 49 (103)
.+.+...++.+......+.++|.|.||+.-+
T Consensus 169 ~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi 199 (268)
T 4ew8_A 169 RQTPPGGRVTLSARRALGEVRLDVSDTGRGV 199 (268)
T ss_dssp HHSCTTCEEEEEEEECSSEEEEEEEESSCCC
T ss_pred HhCCCCCEEEEEEEecCCEEEEEEEcCCCCC
Confidence 4556667899988888999999999997654
No 38
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=20.61 E-value=57 Score=24.27 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=17.5
Q ss_pred cCHHHHHHHHHHHHhhCCCc
Q 034131 5 TSWDEFVGRSVQLYKADPQS 24 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a~P~k 24 (103)
+||+||++.++.|-...|..
T Consensus 165 ~Twdel~~~~~~l~~~~~~~ 184 (420)
T 4hw8_A 165 QTLEEVEANAAKLTDSKKKQ 184 (420)
T ss_dssp CBHHHHHHHHHHHCBTTTTB
T ss_pred CCHHHHHHHHHHHhccCCce
Confidence 69999999999999888753
No 39
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=20.33 E-value=51 Score=24.46 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=14.1
Q ss_pred cCHHHHHHHHHHHHhh
Q 034131 5 TSWDEFVGRSVQLYKA 20 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a 20 (103)
+||+||++.++.|-..
T Consensus 147 ~Twdel~~~~~~l~~~ 162 (401)
T 2heu_A 147 ETWDEFEQLVKDIVAK 162 (401)
T ss_dssp CSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6999999999998765
No 40
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=20.23 E-value=51 Score=24.43 Aligned_cols=16 Identities=25% Similarity=0.669 Sum_probs=14.0
Q ss_pred cCHHHHHHHHHHHHhh
Q 034131 5 TSWDEFVGRSVQLYKA 20 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a 20 (103)
+||+||++.++.|-..
T Consensus 140 ~Twdel~~~~~~l~~~ 155 (400)
T 2b3f_A 140 RTWDKFLATCQTLKQK 155 (400)
T ss_dssp SSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6999999999998654
No 41
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=20.16 E-value=50 Score=24.23 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=15.1
Q ss_pred cCHHHHHHHHHHHHhhCC
Q 034131 5 TSWDEFVGRSVQLYKADP 22 (103)
Q Consensus 5 ~tw~eF~~~s~~Ly~a~P 22 (103)
+||+||.+.++.|-...+
T Consensus 125 ~Twdel~~~~~~l~~~~~ 142 (382)
T 2gha_A 125 KTMDELIEIAKQIDEEFG 142 (382)
T ss_dssp SBHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhccCC
Confidence 699999999999976543
No 42
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=20.12 E-value=1.5e+02 Score=17.52 Aligned_cols=34 Identities=6% Similarity=-0.015 Sum_probs=17.2
Q ss_pred ccCHHHHHHHHHHHHhhCCCcceEEEeeecCCCeEEEE
Q 034131 4 VTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLK 41 (103)
Q Consensus 4 ~~tw~eF~~~s~~Ly~a~P~kTRy~~KYr~~~g~LvLK 41 (103)
+.+|++|.+. +...+....+.+.+......+.+.
T Consensus 51 v~~~~d~~~~----~~~~~~g~~v~l~v~R~g~~~~~~ 84 (87)
T 2i6v_A 51 LTDPNVMNTL----FQSMNEMTEMSLTVERDGQQHDVY 84 (87)
T ss_dssp TTCHHHHHHH----HHTGGGCSEEEEEEEETTEEEEEE
T ss_pred CCCHHHHHHH----HHhcCCCCEEEEEEEECCEEEEEE
Confidence 5789988643 333222344555554443344443
Done!