BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034135
MSNPQLSSRRTTSFPSSSSFLEKNLFSINGVPKQLSFGRDRVKVRFSKKIVRVHALSSNS
NSYLKMNLNEYMVTLEKPLGIRFALTVDGKIFVHALRKGVIHR

High Scoring Gene Products

Symbol, full name Information P value
LSF1
AT3G01510 		protein from Arabidopsis thaliana 5.4e-14

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034135
        (103 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2084133 - symbol:LSF1 "AT3G01510" species:3702...   190  5.4e-14   1


>TAIR|locus:2084133 [details] [associations]
            symbol:LSF1 "AT3G01510" species:3702 "Arabidopsis
            thaliana" [GO:0006470 "protein dephosphorylation" evidence=IEA;IBA]
            [GO:0008138 "protein tyrosine/serine/threonine phosphatase
            activity" evidence=IEA;IBA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0005983
            "starch catabolic process" evidence=IMP] [GO:0043036 "starch grain"
            evidence=IDA] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0019252 "starch biosynthetic process" evidence=RCA] [GO:0043085
            "positive regulation of catalytic activity" evidence=RCA]
            InterPro:IPR000340 InterPro:IPR001478 InterPro:IPR020422
            Pfam:PF00782 PROSITE:PS00383 PROSITE:PS50054 PROSITE:PS50056
            GO:GO:0009570 EMBL:CP002686 GO:GO:0006470 GO:GO:0005983
            SUPFAM:SSF50156 EMBL:AC009325 GO:GO:0008138 GO:GO:0019203
            GO:GO:0009569 EMBL:AY086403 IPI:IPI00523353 RefSeq:NP_566139.1
            UniGene:At.41267 ProteinModelPortal:F4J117 SMR:F4J117 PRIDE:F4J117
            EnsemblPlants:AT3G01510.1 GeneID:821127 KEGG:ath:AT3G01510
            TAIR:At3g01510 HOGENOM:HOG000242759 OMA:WATWDLI Uniprot:F4J117
        Length = 591

 Score = 190 (71.9 bits), Expect = 5.4e-14, P = 5.4e-14
 Identities = 40/62 (64%), Positives = 51/62 (82%)

Query:    41 RVKVRFSKK---IVRVHALSSNSNSYLKMNLNEYMVTLEKPLGIRFALTVDGKIFVHALR 97
             R K  F+++   ++RV A+SS+S  + KMNLNEYMVTLEKPLGIRFAL+ DGKIFVHA++
Sbjct:    45 REKFGFNRRRRVVLRVVAMSSSSTPF-KMNLNEYMVTLEKPLGIRFALSADGKIFVHAIK 103

Query:    98 KG 99
             KG
Sbjct:   104 KG 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      103        89   0.00091  102 3  11 22  0.42    29
                                                     29  0.50    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  451 (48 KB)
  Total size of DFA:  79 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.61u 0.19s 9.80t   Elapsed:  00:00:00
  Total cpu time:  9.62u 0.19s 9.81t   Elapsed:  00:00:00
  Start:  Fri May 10 15:41:14 2013   End:  Fri May 10 15:41:14 2013

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