BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034135
         (103 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis
           thaliana GN=LSF1 PE=1 SV=1
          Length = 591

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 41/45 (91%), Gaps = 1/45 (2%)

Query: 55  ALSSNSNSYLKMNLNEYMVTLEKPLGIRFALTVDGKIFVHALRKG 99
           A+SS+S  + KMNLNEYMVTLEKPLGIRFAL+ DGKIFVHA++KG
Sbjct: 62  AMSSSSTPF-KMNLNEYMVTLEKPLGIRFALSADGKIFVHAIKKG 105


>sp|P13944|COCA1_CHICK Collagen alpha-1(XII) chain OS=Gallus gallus GN=COL12A1 PE=1 SV=3
          Length = 3124

 Score = 30.4 bits (67), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 19   SFLEKNLFSINGVPKQLSFGRDRVKVRFSKKIVRVHALSSNSNSYLKMNLNEYMVTLEKP 78
            SF  K+     G  + ++F  D VK  F     +VH + ++SN  + ++ +E    LEKP
Sbjct: 2624 SFFNKD---TRGEVQTVTFDNDEVKKIFYGSFHKVHIVVTSSNVKIYIDCSE---ILEKP 2677

Query: 79   LGIRFALTVDGKIFVHALRKG 99
            +     +T DG   +  L KG
Sbjct: 2678 IKEAGNITTDGYEILGKLLKG 2698


>sp|Q8WIT2|MATK_STEPS Maturase K OS=Stewartia pseudocamellia GN=matK PE=3 SV=1
          Length = 508

 Score = 29.6 bits (65), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 56  LSSNSNSYLKMNLNEYMVTLEKPLGIRFALTVDGK 90
           L  N+N Y +M L  + V +E P  +R   +++GK
Sbjct: 87  LGHNTNLYFQMILEGFAVVVEIPFSLRLRFSLEGK 121


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.133    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,739,080
Number of Sequences: 539616
Number of extensions: 1130963
Number of successful extensions: 2783
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2777
Number of HSP's gapped (non-prelim): 9
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)