Query 034135
Match_columns 103
No_of_seqs 10 out of 12
Neff 1.5
Searched_HMMs 29240
Date Mon Mar 25 17:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmz_A INAD-like protein; PDZ 64.0 14 0.00049 22.9 4.7 39 62-100 8-57 (129)
2 3cbz_A Dishevelled-2; PDZ doma 54.7 17 0.0006 22.1 3.9 33 68-100 4-44 (108)
3 1kwa_A Hcask/LIN-2 protein; PD 54.7 8.3 0.00028 22.8 2.3 29 72-100 4-36 (88)
4 1n7e_A AMPA receptor interacti 52.5 12 0.0004 22.1 2.7 31 70-100 6-41 (97)
5 2k1h_A Uncharacterized protein 49.9 9.3 0.00032 25.2 2.1 39 6-45 23-64 (94)
6 1pqx_A Conserved hypothetical 48.1 9.5 0.00032 25.0 1.9 39 6-45 23-64 (91)
7 2ejy_A 55 kDa erythrocyte memb 47.3 18 0.00061 22.5 3.1 29 72-100 15-47 (97)
8 1v62_A KIAA1719 protein; struc 47.0 34 0.0012 21.1 4.3 32 69-100 15-53 (117)
9 2je6_I RRP4, exosome complex R 46.8 4.6 0.00016 29.8 0.3 23 74-96 179-201 (251)
10 2iwn_A Multiple PDZ domain pro 44.1 20 0.00069 20.5 2.8 32 69-100 4-44 (97)
11 2ja9_A Exosome complex exonucl 43.7 10 0.00035 26.8 1.7 21 75-95 117-137 (175)
12 1qav_A Alpha-1 syntrophin (res 43.6 28 0.00097 20.0 3.4 31 70-100 5-41 (90)
13 2qkv_A Inactivation-NO-after-p 42.9 32 0.0011 20.3 3.6 32 68-100 7-42 (96)
14 2opg_A Multiple PDZ domain pro 42.5 28 0.00094 20.3 3.2 31 70-100 5-41 (98)
15 2jil_A GRIP1 protein, glutamat 41.9 38 0.0013 19.6 3.8 31 70-100 4-43 (97)
16 2ba0_A Archeal exosome RNA bin 41.1 7.1 0.00024 28.3 0.5 23 74-96 160-182 (229)
17 2nn6_G Exosome complex exonucl 40.6 8.1 0.00028 29.6 0.8 22 74-95 234-255 (289)
18 3qqz_A Putative uncharacterize 39.9 16 0.00055 26.4 2.2 32 66-97 8-47 (255)
19 1uit_A Human discs large 5 pro 39.9 26 0.0009 21.3 3.0 24 77-100 30-53 (117)
20 2djt_A Unnamed protein product 39.3 27 0.00093 20.6 2.9 35 66-100 8-49 (104)
21 1wf8_A Neurabin-I; PDZ domain, 38.6 43 0.0015 20.0 3.7 36 65-100 5-51 (107)
22 2vwr_A Ligand of NUMB protein 36.4 45 0.0015 19.3 3.5 32 69-100 3-40 (95)
23 1wi2_A Riken cDNA 2700099C19; 35.7 20 0.00067 21.5 1.9 36 65-100 11-52 (104)
24 2csj_A TJP2 protein; PDZ domai 35.7 16 0.00054 22.4 1.4 35 66-100 11-57 (117)
25 2yt7_A Amyloid beta A4 precurs 34.6 49 0.0017 19.7 3.5 29 72-100 12-48 (101)
26 3egg_C Spinophilin; PP1, serin 34.1 1.1E+02 0.0036 20.7 5.6 33 68-100 79-122 (170)
27 2exu_A Transcription initiatio 31.5 17 0.0006 26.7 1.3 25 76-100 134-161 (200)
28 2qg1_A Multiple PDZ domain pro 30.4 23 0.00079 20.4 1.5 32 69-100 4-40 (92)
29 3gge_A PDZ domain-containing p 30.3 34 0.0012 22.2 2.4 24 77-100 16-39 (95)
30 2e7k_A Maguk P55 subfamily mem 30.1 46 0.0016 19.6 2.8 29 71-100 8-40 (91)
31 2w4f_A Protein LAP4; structura 30.0 60 0.0021 18.6 3.3 33 68-100 2-45 (97)
32 2fcf_A Multiple PDZ domain pro 30.0 34 0.0012 20.1 2.2 34 67-100 2-50 (103)
33 1qau_A Neuronal nitric oxide s 29.7 63 0.0022 19.2 3.4 32 69-100 1-37 (112)
34 2plg_A TLL0839 protein; hypoth 29.7 51 0.0018 23.6 3.5 63 34-97 53-121 (163)
35 2h2b_A Tight junction protein 28.5 68 0.0023 18.9 3.4 35 66-100 4-50 (107)
36 2q3g_A PDZ and LIM domain prot 27.6 74 0.0025 18.1 3.4 33 68-100 2-38 (89)
37 3ncq_A Nitrogen regulatory pro 26.7 22 0.00076 23.6 1.1 12 86-97 86-97 (119)
38 3t9z_A GLNK3, nitrogen regulat 26.6 22 0.00076 23.5 1.1 12 86-97 86-97 (118)
39 4e34_A Golgi-associated PDZ an 26.5 33 0.0011 19.5 1.7 30 71-100 4-39 (87)
40 2nn6_H Exosome complex exonucl 25.8 33 0.0011 26.3 2.0 20 78-97 205-224 (308)
41 3i4w_A Disks large homolog 4; 25.7 83 0.0028 18.2 3.4 30 71-100 13-46 (104)
42 2ism_A Putative oxidoreductase 25.5 34 0.0011 24.4 1.9 24 77-103 269-292 (352)
43 3mhy_A PII-like protein PZ; PI 25.1 30 0.001 22.3 1.4 11 87-97 87-97 (112)
44 3e17_A Tight junction protein 25.0 40 0.0014 19.7 1.9 19 82-100 14-32 (88)
45 1wdj_A Hypothetical protein TT 23.6 16 0.00054 23.9 -0.1 34 62-96 7-40 (187)
46 2ego_A General receptor for ph 22.5 41 0.0014 19.7 1.6 11 90-100 38-48 (96)
47 2yub_A LIMK-2, LIM domain kina 22.2 90 0.0031 19.6 3.3 30 69-98 12-53 (118)
48 2ehr_A INAD-like protein; PDZ 21.8 82 0.0028 19.0 2.9 37 64-100 10-61 (117)
49 3a9g_A Putative uncharacterize 21.8 50 0.0017 23.8 2.2 30 70-102 23-52 (354)
50 4aff_A Nitrogen regulatory pro 21.5 34 0.0012 22.4 1.2 11 87-97 87-97 (116)
51 1va8_A Maguk P55 subfamily mem 21.4 94 0.0032 18.8 3.2 22 78-100 38-59 (113)
52 3l7p_A Putative nitrogen regul 21.3 37 0.0013 22.2 1.3 14 84-97 87-100 (115)
53 3tsz_A Tight junction protein 21.2 88 0.003 23.8 3.6 23 78-100 20-42 (391)
54 2oml_A Ribosomal large subunit 20.8 26 0.00088 23.7 0.5 14 69-82 10-23 (189)
55 3shw_A Tight junction protein 20.8 85 0.0029 25.2 3.6 29 72-100 4-34 (468)
56 2uzc_A Human pdlim5, PDZ and L 20.8 1.2E+02 0.0042 17.0 3.4 32 69-100 3-38 (88)
57 3l4f_D SH3 and multiple ankyri 20.6 1.2E+02 0.004 19.3 3.6 32 69-100 27-76 (132)
58 2pkt_A PDZ and LIM domain prot 20.5 1.2E+02 0.0041 17.2 3.4 25 76-100 12-38 (91)
59 3das_A Putative oxidoreductase 20.3 53 0.0018 24.8 2.2 24 77-103 264-287 (347)
No 1
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=64.01 E-value=14 Score=22.86 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=26.6
Q ss_pred cccccccceeeeeecc----ceeeEEEEe-------eCCeEEeeeecccc
Q 034135 62 SYLKMNLNEYMVTLEK----PLGIRFALT-------VDGKIFVHALRKGV 100 (103)
Q Consensus 62 s~fKMNLNEYMVtleK----PLGIRFALt-------vdGKVfVHaLkKG~ 100 (103)
..-....+.|.|.+.| ++|+.++-. .++-++|..+..|+
T Consensus 8 ~~~~~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~s 57 (129)
T 2dmz_A 8 GSDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGS 57 (129)
T ss_dssp CCSSCCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTS
T ss_pred CCCCCCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCC
Confidence 3344567888999955 677777653 24578998877664
No 2
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=54.67 E-value=17 Score=22.13 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=23.4
Q ss_pred cceeeeeecc----ceeeEEEEee----CCeEEeeeecccc
Q 034135 68 LNEYMVTLEK----PLGIRFALTV----DGKIFVHALRKGV 100 (103)
Q Consensus 68 LNEYMVtleK----PLGIRFALtv----dGKVfVHaLkKG~ 100 (103)
++.|.|+|+| +||+.++-.. +.-+||.++..|+
T Consensus 4 ~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~s 44 (108)
T 3cbz_A 4 MNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGG 44 (108)
T ss_dssp CCEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTS
T ss_pred ceEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCC
Confidence 5788888885 4777765432 4578998887764
No 3
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=54.65 E-value=8.3 Score=22.82 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=19.2
Q ss_pred eeeecc----ceeeEEEEeeCCeEEeeeecccc
Q 034135 72 MVTLEK----PLGIRFALTVDGKIFVHALRKGV 100 (103)
Q Consensus 72 MVtleK----PLGIRFALtvdGKVfVHaLkKG~ 100 (103)
+|.|+| ++|+.+...-+|.++|..+..|+
T Consensus 4 ~V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gs 36 (88)
T 1kwa_A 4 LVQFQKNTDEPMGITLKMNELNHCIVARIMHGG 36 (88)
T ss_dssp EEEEEECSSSCCCEEEECSCGGGEEEEEECTTS
T ss_pred EEEEEeCCCCceeEEEEeCCCCCEEEEEECCCC
Confidence 355554 47777665445789998887764
No 4
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=52.49 E-value=12 Score=22.07 Aligned_cols=31 Identities=39% Similarity=0.619 Sum_probs=19.8
Q ss_pred eeeeeecc---ceeeEEEEeeC--CeEEeeeecccc
Q 034135 70 EYMVTLEK---PLGIRFALTVD--GKIFVHALRKGV 100 (103)
Q Consensus 70 EYMVtleK---PLGIRFALtvd--GKVfVHaLkKG~ 100 (103)
.|.|.+.| ++|+.+.-..+ +.++|..+..|+
T Consensus 6 ~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~s 41 (97)
T 1n7e_A 6 IYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGG 41 (97)
T ss_dssp EEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTS
T ss_pred EEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCC
Confidence 45566655 57777655443 578888877664
No 5
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=49.92 E-value=9.3 Score=25.18 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=28.2
Q ss_pred cccccccccCCC---hhhhhhccccccCcccccccccceEEEE
Q 034135 6 LSSRRTTSFPSS---SSFLEKNLFSINGVPKQLSFGRDRVKVR 45 (103)
Q Consensus 6 lssrrttsfpss---ssfleknlfsingvpkqlsfgrdrv~~~ 45 (103)
|....+..|++. .|=|-+.||.|.|| |..-||.|-|.|.
T Consensus 23 l~~g~s~~f~~~~a~~SPLA~~LF~i~gV-k~Vf~g~dFITVt 64 (94)
T 2k1h_A 23 RQDNSFTTYTAAQEGQPEFINRLFEIEGV-KSIFYVLDFISID 64 (94)
T ss_dssp CTTCCCCEECCCCTTSCHHHHHHHTSTTE-EEEEEETTEEEEE
T ss_pred cCCCCceecCCccccCCHHHHHhhCCCCe-eEEEEeCCEEEEe
Confidence 333335556654 36688899999998 6788999988765
No 6
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=48.07 E-value=9.5 Score=24.99 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=28.7
Q ss_pred cccccccccCCC---hhhhhhccccccCcccccccccceEEEE
Q 034135 6 LSSRRTTSFPSS---SSFLEKNLFSINGVPKQLSFGRDRVKVR 45 (103)
Q Consensus 6 lssrrttsfpss---ssfleknlfsingvpkqlsfgrdrv~~~ 45 (103)
|....+..|++. .|=|-+.||.|.|| +..-||.|-|.|.
T Consensus 23 l~~g~s~~F~~~~a~~SPLA~~LF~i~gV-k~Vf~g~dFITVt 64 (91)
T 1pqx_A 23 REGMTSDTYTKVDDSQPAFINDILKVEGV-KSIFHVMDFISVD 64 (91)
T ss_dssp SSCCCCEEESSSCSSCCHHHHHHHHSTTE-EEEEEETTEEEEE
T ss_pred cCCCCceEeCCccccCCHHHHHhhCCCCe-eEEEEeCCEEEEe
Confidence 444445666654 46788899999998 6788999988765
No 7
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=47.32 E-value=18 Score=22.50 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=20.0
Q ss_pred eeeecc----ceeeEEEEeeCCeEEeeeecccc
Q 034135 72 MVTLEK----PLGIRFALTVDGKIFVHALRKGV 100 (103)
Q Consensus 72 MVtleK----PLGIRFALtvdGKVfVHaLkKG~ 100 (103)
.|.++| +||+.+...-++.++|-.+..|+
T Consensus 15 ~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gs 47 (97)
T 2ejy_A 15 LIQFEKVTEEPMGICLKLNEKQSCTVARILHGG 47 (97)
T ss_dssp EEEEEECSSSCCSEEEEECTTCCEEEEEECSSS
T ss_pred EEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCC
Confidence 355555 77887776556779998877664
No 8
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=46.96 E-value=34 Score=21.09 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=20.9
Q ss_pred ceeeeeecc----ceeeEEEEeeC---CeEEeeeecccc
Q 034135 69 NEYMVTLEK----PLGIRFALTVD---GKIFVHALRKGV 100 (103)
Q Consensus 69 NEYMVtleK----PLGIRFALtvd---GKVfVHaLkKG~ 100 (103)
...+|.|+| +||+.+.-..+ |.+||..+..|+
T Consensus 15 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~s 53 (117)
T 1v62_A 15 GPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPAS 53 (117)
T ss_dssp SSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTS
T ss_pred CcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCC
Confidence 456677776 56666655433 459998887764
No 9
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=46.82 E-value=4.6 Score=29.83 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=15.7
Q ss_pred eeccceeeEEEEeeCCeEEeeee
Q 034135 74 TLEKPLGIRFALTVDGKIFVHAL 96 (103)
Q Consensus 74 tleKPLGIRFALtvdGKVfVHaL 96 (103)
+|.+++|+..|+..+|+|||.+-
T Consensus 179 ~l~~~~~~ei~vG~NG~IWi~~~ 201 (251)
T 2je6_I 179 TLTSKSGCSIFVANNGRIWATCP 201 (251)
T ss_dssp HHHTTC---CEECTTSEEEC---
T ss_pred HhcccCCeEEEEECCcEEEEeCC
Confidence 57789999999999999999853
No 10
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=44.11 E-value=20 Score=20.49 Aligned_cols=32 Identities=34% Similarity=0.489 Sum_probs=20.4
Q ss_pred ceeeeeeccc---eeeEEEEee------CCeEEeeeecccc
Q 034135 69 NEYMVTLEKP---LGIRFALTV------DGKIFVHALRKGV 100 (103)
Q Consensus 69 NEYMVtleKP---LGIRFALtv------dGKVfVHaLkKG~ 100 (103)
+++-|+++|+ +|+.+.-.. ++-++|..+..|+
T Consensus 4 ~~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s 44 (97)
T 2iwn_A 4 ETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSS 44 (97)
T ss_dssp EEEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTC
T ss_pred EEEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCC
Confidence 3556666665 777776542 3568888776654
No 11
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=43.66 E-value=10 Score=26.82 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.6
Q ss_pred eccceeeEEEEeeCCeEEeee
Q 034135 75 LEKPLGIRFALTVDGKIFVHA 95 (103)
Q Consensus 75 leKPLGIRFALtvdGKVfVHa 95 (103)
+.+-+++..|+..+|+|||.+
T Consensus 117 l~~~~~~ei~vG~NG~IWi~~ 137 (175)
T 2ja9_A 117 LAAHTKFEVAIGLNGKIWVKC 137 (175)
T ss_dssp HHTTCCCEEEEETTTEEEEEC
T ss_pred hhccCCeEEEEECCcEEEEec
Confidence 566789999999999999985
No 12
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=43.58 E-value=28 Score=19.98 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=20.2
Q ss_pred eeeeeecc----ceeeEEEEeeC--CeEEeeeecccc
Q 034135 70 EYMVTLEK----PLGIRFALTVD--GKIFVHALRKGV 100 (103)
Q Consensus 70 EYMVtleK----PLGIRFALtvd--GKVfVHaLkKG~ 100 (103)
++.|++.| ++|+.++-..+ .-++|..+..|+
T Consensus 5 ~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~s 41 (90)
T 1qav_A 5 RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGL 41 (90)
T ss_dssp CEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTS
T ss_pred cEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCC
Confidence 56777776 57777665433 358888876654
No 13
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=42.91 E-value=32 Score=20.34 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=19.8
Q ss_pred cceeeeeecc----ceeeEEEEeeCCeEEeeeecccc
Q 034135 68 LNEYMVTLEK----PLGIRFALTVDGKIFVHALRKGV 100 (103)
Q Consensus 68 LNEYMVtleK----PLGIRFALtvdGKVfVHaLkKG~ 100 (103)
..++.|++.| .+|+.+.-. +.-++|..+..|+
T Consensus 7 ~~~~~v~l~~~~~~glG~~~~~~-~~gv~V~~V~~~s 42 (96)
T 2qkv_A 7 LEKFNVDLMKKAGKELGLSLSPN-EIGCTIADLIQGQ 42 (96)
T ss_dssp CCCEEEEEECBTTBCCCEEEEEC-SSSEEEEEECTTS
T ss_pred CceEEEEEEeCCCCCccEEEEeC-CCcEEEEEeCCCC
Confidence 4556677754 577766553 3348888877664
No 14
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=42.53 E-value=28 Score=20.27 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=20.3
Q ss_pred eeeeeec---cceeeEEEEeeC---CeEEeeeecccc
Q 034135 70 EYMVTLE---KPLGIRFALTVD---GKIFVHALRKGV 100 (103)
Q Consensus 70 EYMVtle---KPLGIRFALtvd---GKVfVHaLkKG~ 100 (103)
++.|++. .++|+.+.-..| +-++|..+..|+
T Consensus 5 ~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~s 41 (98)
T 2opg_A 5 ETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEG 41 (98)
T ss_dssp EEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTS
T ss_pred EEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCC
Confidence 3445554 367887776665 578888877664
No 15
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=41.92 E-value=38 Score=19.62 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=20.2
Q ss_pred eeeeeecc---ceeeEEEEee------CCeEEeeeecccc
Q 034135 70 EYMVTLEK---PLGIRFALTV------DGKIFVHALRKGV 100 (103)
Q Consensus 70 EYMVtleK---PLGIRFALtv------dGKVfVHaLkKG~ 100 (103)
.+-|++.| ++|++++-.. +.-++|..+..|+
T Consensus 4 ~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~s 43 (97)
T 2jil_A 4 TVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGG 43 (97)
T ss_dssp EEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTS
T ss_pred EEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCC
Confidence 34455554 6788876654 3568888877664
No 16
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=41.10 E-value=7.1 Score=28.31 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=19.8
Q ss_pred eeccceeeEEEEeeCCeEEeeee
Q 034135 74 TLEKPLGIRFALTVDGKIFVHAL 96 (103)
Q Consensus 74 tleKPLGIRFALtvdGKVfVHaL 96 (103)
+|.+++|+..|+..+|+|||.+-
T Consensus 160 ~l~~~~~~ei~vG~NG~IWi~~~ 182 (229)
T 2ba0_A 160 LLKSELDVQIVVGQNGLIWVNGD 182 (229)
T ss_dssp HHHHHHTCEEEECTTSEEEEESC
T ss_pred HhcccCCeEEEEECCcEEEEeCC
Confidence 46678999999999999999753
No 17
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=40.62 E-value=8.1 Score=29.59 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.7
Q ss_pred eeccceeeEEEEeeCCeEEeee
Q 034135 74 TLEKPLGIRFALTVDGKIFVHA 95 (103)
Q Consensus 74 tleKPLGIRFALtvdGKVfVHa 95 (103)
+|.|++++..|+..+|+|||.+
T Consensus 234 ~L~~~~~~eI~vG~NG~IWI~~ 255 (289)
T 2nn6_G 234 EVGKLYPLEIVFGMNGRIWVKA 255 (289)
T ss_dssp HTTCSSSCCCEEETTTEEEECC
T ss_pred HhcccCCeEEEEECCcEEEEec
Confidence 3678899999999999999985
No 18
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=39.95 E-value=16 Score=26.44 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=21.3
Q ss_pred cccceeeeeec-cce-ee---EEEEeeC---CeEEeeeec
Q 034135 66 MNLNEYMVTLE-KPL-GI---RFALTVD---GKIFVHALR 97 (103)
Q Consensus 66 MNLNEYMVtle-KPL-GI---RFALtvd---GKVfVHaLk 97 (103)
.-|-||-|++| ||+ |+ =++||.| |++|+-.=+
T Consensus 8 ~~l~~y~~~~~~~~l~g~~~~lSGla~~~~~~~L~aV~d~ 47 (255)
T 3qqz_A 8 ASFQNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINK 47 (255)
T ss_dssp -CCTTCEEEEEEEECTTCCSCEEEEEEETTTTEEEEEEET
T ss_pred cCccceEEEEeceECCCcccCcceeEEeCCCCEEEEEECC
Confidence 35778889998 888 77 3566664 567764433
No 19
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=39.90 E-value=26 Score=21.26 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=18.3
Q ss_pred cceeeEEEEeeCCeEEeeeecccc
Q 034135 77 KPLGIRFALTVDGKIFVHALRKGV 100 (103)
Q Consensus 77 KPLGIRFALtvdGKVfVHaLkKG~ 100 (103)
.++|+.+....++-|+|..+..|+
T Consensus 30 ~~lG~~~~~~~~~gv~V~~V~~~s 53 (117)
T 1uit_A 30 EPLGISIVSGEKGGIYVSKVTVGS 53 (117)
T ss_dssp CCCCEEEEECTTSCEEEEEECTTS
T ss_pred CCccEEEEccCCCCEEEEEECCCC
Confidence 478888877767789998877664
No 20
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.30 E-value=27 Score=20.60 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=21.1
Q ss_pred cccceeeeeecc---ceeeEEEEee----CCeEEeeeecccc
Q 034135 66 MNLNEYMVTLEK---PLGIRFALTV----DGKIFVHALRKGV 100 (103)
Q Consensus 66 MNLNEYMVtleK---PLGIRFALtv----dGKVfVHaLkKG~ 100 (103)
..-.++.|+++| ++|+.++-.. ++.++|..+..|+
T Consensus 8 ~~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~s 49 (104)
T 2djt_A 8 QASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDG 49 (104)
T ss_dssp SCCCCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTC
T ss_pred CCCceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCC
Confidence 345677888875 4444444322 4568888876654
No 21
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=38.59 E-value=43 Score=19.97 Aligned_cols=36 Identities=33% Similarity=0.379 Sum_probs=23.0
Q ss_pred ccccceeeeeecc---ceeeEEEEe--------eCCeEEeeeecccc
Q 034135 65 KMNLNEYMVTLEK---PLGIRFALT--------VDGKIFVHALRKGV 100 (103)
Q Consensus 65 KMNLNEYMVtleK---PLGIRFALt--------vdGKVfVHaLkKG~ 100 (103)
..+++.+.|+|+| +||++++-. .+.-|||..+..|+
T Consensus 5 ~~~~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~s 51 (107)
T 1wf8_A 5 SSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGG 51 (107)
T ss_dssp CCCEEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTC
T ss_pred cCCceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCC
Confidence 3456667777755 677776651 23468888877664
No 22
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=36.39 E-value=45 Score=19.30 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=20.6
Q ss_pred ceeeeeeccc-----eeeEEEEee-CCeEEeeeecccc
Q 034135 69 NEYMVTLEKP-----LGIRFALTV-DGKIFVHALRKGV 100 (103)
Q Consensus 69 NEYMVtleKP-----LGIRFALtv-dGKVfVHaLkKG~ 100 (103)
+.+.|+|.|+ +|+.++-.. +.-|+|..+..|+
T Consensus 3 ~~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~s 40 (95)
T 2vwr_A 3 EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGG 40 (95)
T ss_dssp EEEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTS
T ss_pred EEEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCC
Confidence 4567888873 677664332 3358888877664
No 23
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=35.73 E-value=20 Score=21.49 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=21.5
Q ss_pred ccccceeeeeeccc----eeeEEEEeeC--CeEEeeeecccc
Q 034135 65 KMNLNEYMVTLEKP----LGIRFALTVD--GKIFVHALRKGV 100 (103)
Q Consensus 65 KMNLNEYMVtleKP----LGIRFALtvd--GKVfVHaLkKG~ 100 (103)
.+......|+|.|+ +|+.++-..+ .-++|..+..|+
T Consensus 11 ~~~~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~s 52 (104)
T 1wi2_A 11 LTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDS 52 (104)
T ss_dssp CCSSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTS
T ss_pred cCCCCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCC
Confidence 34445677888875 5555544322 248888776654
No 24
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=35.70 E-value=16 Score=22.40 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=21.4
Q ss_pred cccceeeeeec----cceeeEEEEeeC--------CeEEeeeecccc
Q 034135 66 MNLNEYMVTLE----KPLGIRFALTVD--------GKIFVHALRKGV 100 (103)
Q Consensus 66 MNLNEYMVtle----KPLGIRFALtvd--------GKVfVHaLkKG~ 100 (103)
....++.|+|+ .++|+.++-..| .-++|..+..|+
T Consensus 11 ~~~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~s 57 (117)
T 2csj_A 11 VIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGG 57 (117)
T ss_dssp EEEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTS
T ss_pred ccceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCC
Confidence 44556678886 456766654332 238888877664
No 25
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=34.61 E-value=49 Score=19.66 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=18.8
Q ss_pred eeeecc----ceeeEEEEeeCC----eEEeeeecccc
Q 034135 72 MVTLEK----PLGIRFALTVDG----KIFVHALRKGV 100 (103)
Q Consensus 72 MVtleK----PLGIRFALtvdG----KVfVHaLkKG~ 100 (103)
.|.++| +||++++-.-+| .++|..+..|+
T Consensus 12 ~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~s 48 (101)
T 2yt7_A 12 EVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGG 48 (101)
T ss_dssp EEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTS
T ss_pred EEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCC
Confidence 455553 688888644344 58998877654
No 26
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=34.08 E-value=1.1e+02 Score=20.70 Aligned_cols=33 Identities=36% Similarity=0.422 Sum_probs=21.2
Q ss_pred cceeeeeecc---ceeeEEEEe--------eCCeEEeeeecccc
Q 034135 68 LNEYMVTLEK---PLGIRFALT--------VDGKIFVHALRKGV 100 (103)
Q Consensus 68 LNEYMVtleK---PLGIRFALt--------vdGKVfVHaLkKG~ 100 (103)
+..+.|+|.| +||+.++-. -++-|||..+..|+
T Consensus 79 ~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gs 122 (170)
T 3egg_C 79 LELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGG 122 (170)
T ss_dssp SEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTS
T ss_pred ceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCC
Confidence 4445677764 677776651 13459998887764
No 27
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=31.50 E-value=17 Score=26.66 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.1
Q ss_pred ccceeeEEEEeeC---CeEEeeeecccc
Q 034135 76 EKPLGIRFALTVD---GKIFVHALRKGV 100 (103)
Q Consensus 76 eKPLGIRFALtvd---GKVfVHaLkKG~ 100 (103)
+.||+|.=++..| |-|||+|-++..
T Consensus 134 ~~~l~I~Si~~~d~lkGYIyVEA~~~~~ 161 (200)
T 2exu_A 134 KKKLKILSIFQRDNYTGRIYIEAPKQSV 161 (200)
T ss_dssp SSCCCCCEEECCTTSTTEEEEECSCHHH
T ss_pred CCCccEEEEEecCCCcEEEEEEECCHHH
Confidence 5799999999866 999999987654
No 28
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=30.41 E-value=23 Score=20.39 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=19.9
Q ss_pred ceeeeeecc----ceeeEEEEee-CCeEEeeeecccc
Q 034135 69 NEYMVTLEK----PLGIRFALTV-DGKIFVHALRKGV 100 (103)
Q Consensus 69 NEYMVtleK----PLGIRFALtv-dGKVfVHaLkKG~ 100 (103)
+.+.|+|+| ++|+.+.-.. +.-++|..+..|+
T Consensus 4 ~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~s 40 (92)
T 2qg1_A 4 DTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGG 40 (92)
T ss_dssp CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTS
T ss_pred eEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCC
Confidence 467788887 3666654322 2358888776654
No 29
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=30.34 E-value=34 Score=22.22 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=19.1
Q ss_pred cceeeEEEEeeCCeEEeeeecccc
Q 034135 77 KPLGIRFALTVDGKIFVHALRKGV 100 (103)
Q Consensus 77 KPLGIRFALtvdGKVfVHaLkKG~ 100 (103)
.|||+-++-+-+|.+||-.+..|.
T Consensus 16 ~~LG~tI~~~g~g~~~I~rI~~gg 39 (95)
T 3gge_A 16 DSLGLTITDNGVGYAFIKRIKDGG 39 (95)
T ss_dssp SCCCEEEECSSSSCCEEEEECTTS
T ss_pred CCceEEEEcCCCCcEEEEEEcCCC
Confidence 489988875567899999888765
No 30
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.11 E-value=46 Score=19.59 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=19.4
Q ss_pred eeeeecc----ceeeEEEEeeCCeEEeeeecccc
Q 034135 71 YMVTLEK----PLGIRFALTVDGKIFVHALRKGV 100 (103)
Q Consensus 71 YMVtleK----PLGIRFALtvdGKVfVHaLkKG~ 100 (103)
.+|.|.| +||+++.-. ++.++|..+..|+
T Consensus 8 r~v~l~k~~~~~lG~~i~~~-~~~v~V~~V~~~s 40 (91)
T 2e7k_A 8 RMVGIRKTAGEHLGVTFRVE-GGELVIARILHGG 40 (91)
T ss_dssp CBCCBCCCTTCCCCEEEEES-SSSEEEEEECSSS
T ss_pred EEEEEEECCCCcEeEEEEec-CCCEEEEEECCCC
Confidence 4567765 688887663 4668887776553
No 31
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=29.99 E-value=60 Score=18.63 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=19.6
Q ss_pred cceeeeeeccc---eeeEEEEe--------eCCeEEeeeecccc
Q 034135 68 LNEYMVTLEKP---LGIRFALT--------VDGKIFVHALRKGV 100 (103)
Q Consensus 68 LNEYMVtleKP---LGIRFALt--------vdGKVfVHaLkKG~ 100 (103)
+.+|.++++|. +|+.+.-. .++.++|..+..|+
T Consensus 2 ~~~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~s 45 (97)
T 2w4f_A 2 MEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEG 45 (97)
T ss_dssp -CEEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTS
T ss_pred ceEEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCC
Confidence 45777777764 55555432 23568887776654
No 32
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=29.98 E-value=34 Score=20.05 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=18.8
Q ss_pred ccceeeeeeccc----eeeEEEEe-----------eCCeEEeeeecccc
Q 034135 67 NLNEYMVTLEKP----LGIRFALT-----------VDGKIFVHALRKGV 100 (103)
Q Consensus 67 NLNEYMVtleKP----LGIRFALt-----------vdGKVfVHaLkKG~ 100 (103)
.|+.|.|.+.|. +|+.+.-. .++.++|..+..|+
T Consensus 2 ~ldp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~s 50 (103)
T 2fcf_A 2 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDS 50 (103)
T ss_dssp CCSCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSS
T ss_pred CCCCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCC
Confidence 466777877763 56655321 12358888776654
No 33
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=29.70 E-value=63 Score=19.20 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=20.5
Q ss_pred ceeeeeecc----ceeeEEEEeeC-CeEEeeeecccc
Q 034135 69 NEYMVTLEK----PLGIRFALTVD-GKIFVHALRKGV 100 (103)
Q Consensus 69 NEYMVtleK----PLGIRFALtvd-GKVfVHaLkKG~ 100 (103)
|-|.|.|.| ++|+++.-..+ +.++|..+..|+
T Consensus 1 n~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~s 37 (112)
T 1qau_A 1 NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGG 37 (112)
T ss_dssp CEEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTS
T ss_pred CEEEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCC
Confidence 446677743 57877766543 368888776664
No 34
>2plg_A TLL0839 protein; hypothetical, uncharacterized, DUF1821, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 2.60A {Synechococcus elongatus} SCOP: d.198.1.2
Probab=29.68 E-value=51 Score=23.59 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=39.2
Q ss_pred ccccccceEEEEee----hhheeeeeeeecCccccccccceeeeeec--cceeeEEEEeeCCeEEeeeec
Q 034135 34 QLSFGRDRVKVRFS----KKIVRVHALSSNSNSYLKMNLNEYMVTLE--KPLGIRFALTVDGKIFVHALR 97 (103)
Q Consensus 34 qlsfgrdrv~~~~s----k~~~R~l~~s~~~~s~fKMNLNEYMVtle--KPLGIRFALtvdGKVfVHaLk 97 (103)
|+..|--+|.|-++ +-++|+.+-...-...-.-.|-.|+...+ .=+|.|||+. +|.|++-+.+
T Consensus 53 ~~~~GSveV~V~l~g~~d~~~L~V~SPV~~lP~~~~~~l~~~LLE~N~~~t~~arFaI~-~n~V~~v~~r 121 (163)
T 2plg_A 53 MFRYGSAEVFVQLSGHTEEDFLTIWSPVLPLPVADELALYRKLLTLNWLTTFEAHFAIA-EEQVQVVASR 121 (163)
T ss_dssp EEEETTEEEEEEECCSSTTCEEEEEEEEEESCCTTHHHHHHHHHHHTTTTTTTCEEEEE-TTEEEEEEEE
T ss_pred EEEECCEEEEEEecCCCCCCEEEEEEEeccCchhhHHHHHHHHHHhccccccceEEEEE-CCEEEEEEEE
Confidence 45667778888887 66777776333211122233445555554 2478999998 5888887654
No 35
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=28.51 E-value=68 Score=18.88 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=21.6
Q ss_pred cccceeeeeeccc----eeeEEEEeeC--------CeEEeeeecccc
Q 034135 66 MNLNEYMVTLEKP----LGIRFALTVD--------GKIFVHALRKGV 100 (103)
Q Consensus 66 MNLNEYMVtleKP----LGIRFALtvd--------GKVfVHaLkKG~ 100 (103)
|....+.|+|+|. +|+.++-..+ ..++|..+..|+
T Consensus 4 ~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~s 50 (107)
T 2h2b_A 4 MIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGG 50 (107)
T ss_dssp CCEEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTS
T ss_pred ccceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCC
Confidence 4455667777765 5555543332 468888877665
No 36
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=27.63 E-value=74 Score=18.09 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=18.2
Q ss_pred cceeeeeeccce--eeEEEEee--CCeEEeeeecccc
Q 034135 68 LNEYMVTLEKPL--GIRFALTV--DGKIFVHALRKGV 100 (103)
Q Consensus 68 LNEYMVtleKPL--GIRFALtv--dGKVfVHaLkKG~ 100 (103)
++++-|+++++- |+++.-.. +.-++|..+..|+
T Consensus 2 ~~~~~v~~~~~~~~G~~l~gg~~~~~~v~V~~V~~~s 38 (89)
T 2q3g_A 2 MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGG 38 (89)
T ss_dssp EEEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTS
T ss_pred ccEEEEEEcCCCcccEEEECcCCCCCCEEEEEECCCC
Confidence 345666666554 44443222 3347888877664
No 37
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=26.69 E-value=22 Score=23.55 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=8.8
Q ss_pred eeCCeEEeeeec
Q 034135 86 TVDGKIFVHALR 97 (103)
Q Consensus 86 tvdGKVfVHaLk 97 (103)
-=||||||--+.
T Consensus 86 ~GDGkIFV~~Ve 97 (119)
T 3ncq_A 86 PGDGKIFIIPVE 97 (119)
T ss_dssp TTCCEEEEEECS
T ss_pred CCCCEEEEEEhH
Confidence 358999997654
No 38
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=26.63 E-value=22 Score=23.51 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=8.8
Q ss_pred eeCCeEEeeeec
Q 034135 86 TVDGKIFVHALR 97 (103)
Q Consensus 86 tvdGKVfVHaLk 97 (103)
-=||||||--+.
T Consensus 86 ~GDGkIFV~~Ve 97 (118)
T 3t9z_A 86 FGDGRIFVIPVE 97 (118)
T ss_dssp TTCCEEEEEECC
T ss_pred CCCeEEEEEEhH
Confidence 349999997654
No 39
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=26.52 E-value=33 Score=19.49 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=16.4
Q ss_pred eeeeecc----ceeeEEEEeeC--CeEEeeeecccc
Q 034135 71 YMVTLEK----PLGIRFALTVD--GKIFVHALRKGV 100 (103)
Q Consensus 71 YMVtleK----PLGIRFALtvd--GKVfVHaLkKG~ 100 (103)
+.|+|.| ++|+.+.-..+ .-++|..+..|+
T Consensus 4 ~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gs 39 (87)
T 4e34_A 4 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQ 39 (87)
T ss_dssp EEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTS
T ss_pred EEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCC
Confidence 3455554 45555543321 238888777664
No 40
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=25.81 E-value=33 Score=26.33 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.5
Q ss_pred ceeeEEEEeeCCeEEeeeec
Q 034135 78 PLGIRFALTVDGKIFVHALR 97 (103)
Q Consensus 78 PLGIRFALtvdGKVfVHaLk 97 (103)
+.|+..|+..+|+|||.+-.
T Consensus 205 ~~g~eI~vG~NG~IWi~~~~ 224 (308)
T 2nn6_H 205 PCGASVILGNNGFIWIYPTP 224 (308)
T ss_dssp BTTBEEEEETTTEEEEECCC
T ss_pred CCCcEEEEeCCCEEEEcCCc
Confidence 47999999999999998754
No 41
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=25.69 E-value=83 Score=18.24 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=18.4
Q ss_pred eeeeecc---ceeeEEEEeeCC-eEEeeeecccc
Q 034135 71 YMVTLEK---PLGIRFALTVDG-KIFVHALRKGV 100 (103)
Q Consensus 71 YMVtleK---PLGIRFALtvdG-KVfVHaLkKG~ 100 (103)
..|++.| ++|+.+.-..++ -++|..+..|+
T Consensus 13 ~~v~l~k~~~glG~~~~~~~~~~gv~V~~V~~~s 46 (104)
T 3i4w_A 13 RRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGG 46 (104)
T ss_dssp EEEEEECBTTBTSEEEEECC-CCCEEEEEECTTS
T ss_pred EEEEEEeCCCccCEEEECCCCCCCEEEEEECCCC
Confidence 3455544 677777665554 58888776654
No 42
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=25.51 E-value=34 Score=24.43 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=19.3
Q ss_pred cceeeEEEEeeCCeEEeeeeccccccC
Q 034135 77 KPLGIRFALTVDGKIFVHALRKGVIHR 103 (103)
Q Consensus 77 KPLGIRFALtvdGKVfVHaLkKG~ihr 103 (103)
-|.|+-| .+|++||-.+..+.|+|
T Consensus 269 ap~G~~~---~~G~l~v~~~~~~~v~~ 292 (352)
T 2ism_A 269 PPGNLAF---FRGDLYVAGLRGQALLR 292 (352)
T ss_dssp CEEEEEE---ETTEEEEEETTTTEEEE
T ss_pred CCcceEE---ECCEEEEEECCCCEEEE
Confidence 5889998 69999998887776653
No 43
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=25.14 E-value=30 Score=22.27 Aligned_cols=11 Identities=55% Similarity=0.776 Sum_probs=8.5
Q ss_pred eCCeEEeeeec
Q 034135 87 VDGKIFVHALR 97 (103)
Q Consensus 87 vdGKVfVHaLk 97 (103)
=||||||--+.
T Consensus 87 GdGkIfV~~v~ 97 (112)
T 3mhy_A 87 GDGKIFVLDIA 97 (112)
T ss_dssp TCCEEEEEECS
T ss_pred CCeEEEEEEhH
Confidence 48999997654
No 44
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=24.98 E-value=40 Score=19.74 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=13.2
Q ss_pred EEEEeeCCeEEeeeecccc
Q 034135 82 RFALTVDGKIFVHALRKGV 100 (103)
Q Consensus 82 RFALtvdGKVfVHaLkKG~ 100 (103)
+|++.+.|-|||..+..|+
T Consensus 14 ~~G~~~~~gv~V~~V~~gs 32 (88)
T 3e17_A 14 EYGLRLGSQIFVKEMTRTG 32 (88)
T ss_dssp CCCEEEEEEEEEEEECTTS
T ss_pred CCCEEEeCCEEEEEECCCC
Confidence 4445556789998887764
No 45
>1wdj_A Hypothetical protein TT1808; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.52.1.27
Probab=23.62 E-value=16 Score=23.93 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=25.9
Q ss_pred cccccccceeeeeeccceeeEEEEeeCCeEEeeee
Q 034135 62 SYLKMNLNEYMVTLEKPLGIRFALTVDGKIFVHAL 96 (103)
Q Consensus 62 s~fKMNLNEYMVtleKPLGIRFALtvdGKVfVHaL 96 (103)
..-+|++.||.--.+-+-|.|+-+.+||.|++ +-
T Consensus 7 ~~~~~T~eey~~l~~~~~~~r~El~i~G~i~~-~~ 40 (187)
T 1wdj_A 7 LARPVSEEELRRLSELNPGYQWERSPEGRLWV-SP 40 (187)
T ss_dssp CSSCCCHHHHHHHHHHSTTEEEEECTTSCEEE-EE
T ss_pred CCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEe-CC
Confidence 34578999998655523489999989999998 53
No 46
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=22.49 E-value=41 Score=19.67 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=7.0
Q ss_pred eEEeeeecccc
Q 034135 90 KIFVHALRKGV 100 (103)
Q Consensus 90 KVfVHaLkKG~ 100 (103)
-++|..+..|+
T Consensus 38 ~~~V~~V~~~s 48 (96)
T 2ego_A 38 VTFVARVHESS 48 (96)
T ss_dssp EEEEEEECTTC
T ss_pred CeEEEEECCCC
Confidence 56777766554
No 47
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.22 E-value=90 Score=19.63 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=20.7
Q ss_pred ceeeeeecc-------ceeeEEEEeeC-----CeEEeeeecc
Q 034135 69 NEYMVTLEK-------PLGIRFALTVD-----GKIFVHALRK 98 (103)
Q Consensus 69 NEYMVtleK-------PLGIRFALtvd-----GKVfVHaLkK 98 (103)
-.++|++.+ ++|+++.++.+ .-|+|..+..
T Consensus 12 ~~~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~ 53 (118)
T 2yub_A 12 LPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNR 53 (118)
T ss_dssp SCCEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCT
T ss_pred CCceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecC
Confidence 346777776 47899987742 4577877665
No 48
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=21.78 E-value=82 Score=18.97 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=22.1
Q ss_pred cccccceeeeeeccc----eeeEEEEeeC-----------CeEEeeeecccc
Q 034135 64 LKMNLNEYMVTLEKP----LGIRFALTVD-----------GKIFVHALRKGV 100 (103)
Q Consensus 64 fKMNLNEYMVtleKP----LGIRFALtvd-----------GKVfVHaLkKG~ 100 (103)
.......+.|+|.|. ||+.++-..| .-|+|..+..|+
T Consensus 10 ~~~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~s 61 (117)
T 2ehr_A 10 FSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDS 61 (117)
T ss_dssp SSCBCCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSS
T ss_pred cccCCCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCC
Confidence 345566788888765 4544432221 358888776664
No 49
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=21.77 E-value=50 Score=23.76 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=20.2
Q ss_pred eeeeeeccceeeEEEEeeCCeEEeeeecccccc
Q 034135 70 EYMVTLEKPLGIRFALTVDGKIFVHALRKGVIH 102 (103)
Q Consensus 70 EYMVtleKPLGIRFALtvdGKVfVHaLkKG~ih 102 (103)
.+.-.++.|-||.|+ .||++||--.. |.|.
T Consensus 23 ~va~~l~~P~~ia~~--pdG~l~V~e~~-g~I~ 52 (354)
T 3a9g_A 23 EVASDLEVPWSIAPL--GGGRYLVTERP-GRLV 52 (354)
T ss_dssp EEECSCSCEEEEEEE--ETTEEEEEETT-TEEE
T ss_pred EEeCCCCCCeEEEEc--CCCeEEEEeCC-CEEE
Confidence 333447899998764 68999986544 5543
No 50
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=21.52 E-value=34 Score=22.42 Aligned_cols=11 Identities=55% Similarity=0.824 Sum_probs=8.5
Q ss_pred eCCeEEeeeec
Q 034135 87 VDGKIFVHALR 97 (103)
Q Consensus 87 vdGKVfVHaLk 97 (103)
=||||||--+.
T Consensus 87 GDGkIFV~~Ve 97 (116)
T 4aff_A 87 GDGKIFVSPVD 97 (116)
T ss_dssp TCEEEEEEECS
T ss_pred CCeEEEEEEhH
Confidence 48999997654
No 51
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=21.39 E-value=94 Score=18.80 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=13.6
Q ss_pred ceeeEEEEeeCCeEEeeeecccc
Q 034135 78 PLGIRFALTVDGKIFVHALRKGV 100 (103)
Q Consensus 78 PLGIRFALtvdGKVfVHaLkKG~ 100 (103)
++|+.+.-. ++.++|..+..|+
T Consensus 38 ~lG~~i~~~-~~gv~V~~V~~~s 59 (113)
T 1va8_A 38 PLGATVRNE-MDSVIISRIVKGG 59 (113)
T ss_dssp CCCEEEEEC-SSSEEEEEECTTS
T ss_pred ceeEEEEeC-CCCEEEEEeCCCC
Confidence 566665443 5667887776553
No 52
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=21.28 E-value=37 Score=22.19 Aligned_cols=14 Identities=43% Similarity=0.593 Sum_probs=7.6
Q ss_pred EEeeCCeEEeeeec
Q 034135 84 ALTVDGKIFVHALR 97 (103)
Q Consensus 84 ALtvdGKVfVHaLk 97 (103)
+.-=||||||--+.
T Consensus 87 g~~GDGkIFV~~ve 100 (115)
T 3l7p_A 87 GEVGDGKIFVSPVD 100 (115)
T ss_dssp C----CEEEEEECS
T ss_pred CCCCCcEEEEEEhH
Confidence 44469999997654
No 53
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=21.19 E-value=88 Score=23.84 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.2
Q ss_pred ceeeEEEEeeCCeEEeeeecccc
Q 034135 78 PLGIRFALTVDGKIFVHALRKGV 100 (103)
Q Consensus 78 PLGIRFALtvdGKVfVHaLkKG~ 100 (103)
+||+.+.-.-++.|||..+..|+
T Consensus 20 ~lG~~i~gg~~~gi~V~~V~~gs 42 (391)
T 3tsz_A 20 SVGLRLAGGNDVGIFVAGVLEDS 42 (391)
T ss_dssp SCCEEEEEETTTEEEEEEECTTC
T ss_pred ceeEEEEecCCCCEEEEEECCCC
Confidence 78988877678899999888775
No 54
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=20.84 E-value=26 Score=23.69 Aligned_cols=14 Identities=14% Similarity=0.365 Sum_probs=11.9
Q ss_pred ceeeeeeccceeeE
Q 034135 69 NEYMVTLEKPLGIR 82 (103)
Q Consensus 69 NEYMVtleKPLGIR 82 (103)
++.++.+|||-|+-
T Consensus 10 d~~~lvvnKP~G~~ 23 (189)
T 2oml_A 10 PTRVILFNKPYDVL 23 (189)
T ss_dssp CCCEEEEEECTTBC
T ss_pred CCeEEEEECCCCCE
Confidence 57788999999983
No 55
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=20.84 E-value=85 Score=25.19 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=21.2
Q ss_pred eeeecc--ceeeEEEEeeCCeEEeeeecccc
Q 034135 72 MVTLEK--PLGIRFALTVDGKIFVHALRKGV 100 (103)
Q Consensus 72 MVtleK--PLGIRFALtvdGKVfVHaLkKG~ 100 (103)
+|.++| ++|+...-.-++-|||..+..|+
T Consensus 4 ~V~l~k~~~lG~~i~gg~~~Gi~V~~V~~gs 34 (468)
T 3shw_A 4 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDS 34 (468)
T ss_dssp EEEEECCSSCCEEEEEETTTEEEEEEECSSS
T ss_pred EEEEecCCccceEEEccCcCCEEEEEECCCC
Confidence 466665 77777765557789999888775
No 56
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=20.78 E-value=1.2e+02 Score=16.98 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=17.9
Q ss_pred ceeeeeecc--ceeeEEEEee--CCeEEeeeecccc
Q 034135 69 NEYMVTLEK--PLGIRFALTV--DGKIFVHALRKGV 100 (103)
Q Consensus 69 NEYMVtleK--PLGIRFALtv--dGKVfVHaLkKG~ 100 (103)
+++-|++.. |+|+++.-.. +..++|..+..|+
T Consensus 3 ~~~~v~l~~~~~~G~~l~~g~~~~~~~~V~~V~~~s 38 (88)
T 2uzc_A 3 SNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGG 38 (88)
T ss_dssp CEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTS
T ss_pred cEEEEEEcCCCcccEEEECcCCCCCCeEEEEECCCC
Confidence 344555544 4565554333 3358888877664
No 57
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=20.56 E-value=1.2e+02 Score=19.26 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=20.7
Q ss_pred ceeeeeecc----ceeeEEEEeeCC--------------eEEeeeecccc
Q 034135 69 NEYMVTLEK----PLGIRFALTVDG--------------KIFVHALRKGV 100 (103)
Q Consensus 69 NEYMVtleK----PLGIRFALtvdG--------------KVfVHaLkKG~ 100 (103)
.+-+|+|.| ++|+.+.-..+. -|+|..+..|+
T Consensus 27 ~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gs 76 (132)
T 3l4f_D 27 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGG 76 (132)
T ss_dssp CCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTS
T ss_pred CCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCC
Confidence 455677766 567776666542 27888877664
No 58
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=20.54 E-value=1.2e+02 Score=17.23 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=16.1
Q ss_pred ccceeeEEEEeeC--CeEEeeeecccc
Q 034135 76 EKPLGIRFALTVD--GKIFVHALRKGV 100 (103)
Q Consensus 76 eKPLGIRFALtvd--GKVfVHaLkKG~ 100 (103)
+.|+|+++.-..+ ..++|.....|+
T Consensus 12 ~~~~G~~l~~~~~~~~g~~V~~V~~~s 38 (91)
T 2pkt_A 12 PGPWGFRLVGGKDFEQPLAISRVTPGS 38 (91)
T ss_dssp SSCCSEEEEEEGGGTEEEEEEEECTTS
T ss_pred CCCCCEEEEccCCCCCCeEEEEECCCC
Confidence 3567777765544 467887776654
No 59
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=20.30 E-value=53 Score=24.80 Aligned_cols=24 Identities=33% Similarity=0.722 Sum_probs=19.7
Q ss_pred cceeeEEEEeeCCeEEeeeeccccccC
Q 034135 77 KPLGIRFALTVDGKIFVHALRKGVIHR 103 (103)
Q Consensus 77 KPLGIRFALtvdGKVfVHaLkKG~ihr 103 (103)
-|.|+-|. +|.+|+-+|+-+.|.|
T Consensus 264 ap~G~~~~---~g~~~~~~l~~~~l~~ 287 (347)
T 3das_A 264 SPSGIAYA---EGSVWMAGLRGERLWR 287 (347)
T ss_dssp CEEEEEEE---TTEEEEEESTTCSEEE
T ss_pred CCcceEEE---cCceeeccccCCEEEE
Confidence 58899986 8999999998776653
Done!