Query 034136
Match_columns 103
No_of_seqs 120 out of 261
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 10:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2039 Pcp Pyrrolidone-carbox 99.9 4.3E-25 9.4E-30 168.7 5.5 77 14-98 36-112 (207)
2 PRK13194 pyrrolidone-carboxyla 99.8 2E-21 4.3E-26 148.2 7.4 75 14-96 36-110 (208)
3 PRK13193 pyrrolidone-carboxyla 99.8 2E-21 4.3E-26 148.3 7.3 80 10-98 33-112 (209)
4 PRK13195 pyrrolidone-carboxyla 99.8 5.9E-21 1.3E-25 147.4 7.4 80 10-98 34-116 (222)
5 PRK13196 pyrrolidone-carboxyla 99.8 1.1E-20 2.5E-25 144.0 7.3 77 14-98 37-115 (211)
6 PF01470 Peptidase_C15: Pyrogl 99.8 1.6E-20 3.4E-25 141.6 5.6 81 9-98 32-112 (202)
7 TIGR00504 pyro_pdase pyrogluta 99.8 5.2E-20 1.1E-24 140.4 7.6 77 14-98 34-110 (212)
8 PRK13197 pyrrolidone-carboxyla 99.8 5.5E-19 1.2E-23 134.9 7.3 74 15-96 38-111 (215)
9 cd00501 Peptidase_C15 Pyroglut 99.7 4.4E-17 9.5E-22 121.1 7.5 77 14-98 36-112 (194)
10 KOG4755 Predicted pyroglutamyl 97.0 0.00035 7.6E-09 54.4 1.4 81 2-95 46-142 (213)
11 PF06162 DUF976: Caenorhabditi 96.7 0.0034 7.3E-08 47.4 4.9 66 18-93 62-127 (166)
12 PRK07077 hypothetical protein; 42.3 36 0.00078 26.6 3.6 17 45-61 52-68 (238)
13 PRK14697 bifunctional 5'-methy 41.1 37 0.00079 25.8 3.4 18 44-61 66-83 (233)
14 COG1219 ClpX ATP-dependent pro 37.8 15 0.00032 31.4 0.8 55 20-74 186-254 (408)
15 PF05726 Pirin_C: Pirin C-term 37.7 4.9 0.00011 26.9 -1.7 22 81-102 69-90 (104)
16 TIGR01704 MTA/SAH-Nsdase 5'-me 34.7 54 0.0012 24.6 3.4 17 45-61 65-81 (228)
17 PRK06026 5'-methylthioadenosin 33.3 59 0.0013 25.1 3.4 14 45-58 59-72 (212)
18 PRK10528 multifunctional acyl- 33.2 21 0.00046 25.7 0.9 50 18-72 48-98 (191)
19 PRK06714 S-adenosylhomocystein 32.9 59 0.0013 25.0 3.4 18 44-61 66-83 (236)
20 TIGR00639 PurN phosphoribosylg 31.5 51 0.0011 24.6 2.8 49 45-93 78-129 (190)
21 PRK08236 hypothetical protein; 30.2 66 0.0014 24.4 3.2 17 45-61 52-68 (212)
22 PF07484 Collar: Phage Tail Co 30.2 20 0.00043 22.2 0.3 13 72-84 45-57 (57)
23 COG0775 Pfs Nucleoside phospho 30.0 74 0.0016 24.5 3.5 21 44-64 67-88 (234)
24 PF00551 Formyl_trans_N: Formy 27.0 41 0.00089 24.4 1.5 50 45-94 78-130 (181)
25 PF08410 DUF1737: Domain of un 26.1 39 0.00084 21.1 1.1 22 79-100 26-47 (54)
26 TIGR00758 UDG_fam4 uracil-DNA 26.1 68 0.0015 23.3 2.6 29 24-60 86-114 (173)
27 PRK06698 bifunctional 5'-methy 24.4 91 0.002 25.8 3.3 17 44-60 66-82 (459)
28 PLN02584 5'-methylthioadenosin 24.3 1.7E+02 0.0038 22.6 4.7 17 44-60 87-103 (249)
29 PRK05634 nucleosidase; Provisi 24.0 58 0.0013 24.1 1.9 18 44-61 47-64 (185)
30 PF03167 UDG: Uracil DNA glyco 23.0 96 0.0021 20.5 2.7 31 23-61 71-101 (152)
31 PRK07164 5'-methylthioadenosin 20.1 1.4E+02 0.0031 22.7 3.4 19 45-63 70-88 (218)
No 1
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.3e-25 Score=168.72 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=72.6
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (103)
Q Consensus 14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g 93 (103)
..+-.|+|++..+.+.|.+.|++ .+||+||++|||+||+.||+||||||++|||||||+|+||.|+||.++|
T Consensus 36 V~~~~lP~~f~~s~~~l~~~i~~--------~qPd~vl~iG~A~GR~~iT~ERVAINv~DarIpDN~G~qpiDepI~~dG 107 (207)
T COG2039 36 VKGRILPVVFKKSIDALVQAIAE--------VQPDLVLAIGQAGGRTKITPERVAINVDDARIPDNAGNQPIDEPIDPDG 107 (207)
T ss_pred EEEEEcCccHHHHHHHHHHHHHh--------hCCCeEEEecccCCCCcCChhheeeccccccCCCCCCCCcCCCccCCCC
Confidence 45678999999999999999977 8999999999999999999999999999999999999999999999999
Q ss_pred Cceee
Q 034136 94 GGISR 98 (103)
Q Consensus 94 p~~~~ 98 (103)
|.+-+
T Consensus 108 paAYf 112 (207)
T COG2039 108 PAAYF 112 (207)
T ss_pred chhhh
Confidence 98644
No 2
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.85 E-value=2e-21 Score=148.17 Aligned_cols=75 Identities=28% Similarity=0.299 Sum_probs=70.7
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (103)
Q Consensus 14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g 93 (103)
....+|+|+++++.+.|.+++++ .+||+|||||+++||+.|++||+|+|++||++|||+|++|.++||+++|
T Consensus 36 v~~~~LPV~~~~~~~~l~~~l~~--------~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~~g 107 (208)
T PRK13194 36 VFGRVLPVSFKRAREELEKVLDE--------IKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEPIVEGA 107 (208)
T ss_pred EEEEEeCCchHhHHHHHHHHHHH--------hCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCcccCCC
Confidence 45679999999999999888877 7899999999999999999999999999999999999999999999999
Q ss_pred Cce
Q 034136 94 GGI 96 (103)
Q Consensus 94 p~~ 96 (103)
|..
T Consensus 108 p~~ 110 (208)
T PRK13194 108 PAA 110 (208)
T ss_pred CCc
Confidence 975
No 3
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.85 E-value=2e-21 Score=148.27 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=72.9
Q ss_pred ceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceecee
Q 034136 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV 89 (103)
Q Consensus 10 ~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI 89 (103)
+..+ ...+|+|+++.+.+.|.+++++ .+||+|||+|+++||+.|++||+|+|++|||+|||+|++|.+++|
T Consensus 33 ~~~v-~~~~LPv~~~~~~~~l~~~~~~--------~~Pd~vl~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~~~I 103 (209)
T PRK13193 33 KEEV-KGVILPVEYEKIEDLIVTKIRE--------MKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEKI 103 (209)
T ss_pred CceE-EEEEeCCcHHHHHHHHHHHHHH--------HCCCEEEEecccCCcCceEEEEEEEccCcCcCCccCCCCcCCCcc
Confidence 4444 4589999999999999888876 789999999999999999999999999999999999999999999
Q ss_pred ecCCCceee
Q 034136 90 VLEDGGISR 98 (103)
Q Consensus 90 ~~~gp~~~~ 98 (103)
+++||.+-+
T Consensus 104 ~~~gp~~~~ 112 (209)
T PRK13193 104 DPLGQDGIF 112 (209)
T ss_pred cCCCcceee
Confidence 999997644
No 4
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.84 E-value=5.9e-21 Score=147.38 Aligned_cols=80 Identities=18% Similarity=0.095 Sum_probs=71.2
Q ss_pred ceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCC---CCCCCCCCcee
Q 034136 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFL---CPDQLGWQPQQ 86 (103)
Q Consensus 10 ~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfr---iPDn~G~qP~~ 86 (103)
|..+. ..+|+|+++.+.+.|.+++++ .+||+|||+|||+||+.|++||+|+|++|+| +|||+|+||.+
T Consensus 34 ~~~v~-~~~lPv~f~~~~~~l~~~i~~--------~~Pd~Vi~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~ 104 (222)
T PRK13195 34 GATVI-SRIVPNTFFESIAAAQQAIAE--------IEPALVIMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVG 104 (222)
T ss_pred CeEEE-EEEeCeEehHHHHHHHHHHHH--------HCCCEEEEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCC
Confidence 34433 368999999999999888866 7899999999999999999999999999975 99999999999
Q ss_pred ceeecCCCceee
Q 034136 87 IPVVLEDGGISR 98 (103)
Q Consensus 87 ~pI~~~gp~~~~ 98 (103)
+||+++||.+-+
T Consensus 105 ~~I~~~gp~ay~ 116 (222)
T PRK13195 105 EPTDPAGPVAYH 116 (222)
T ss_pred CcccCCCcceee
Confidence 999999998644
No 5
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.83 E-value=1.1e-20 Score=144.04 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=71.6
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceecee--ec
Q 034136 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV--VL 91 (103)
Q Consensus 14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI--~~ 91 (103)
....+|+|+++.+.+.|.+++++ .+||+|||+|+|+||+.|+|||+|+|++||++|||+|++|.++|| ++
T Consensus 37 v~~~~LPV~~~~~~~~l~~~~~~--------~~Pd~vi~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~~i~~~~ 108 (211)
T PRK13196 37 VHSALLPVEPRAAMAALSRLLDE--------LQPSAVLLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDTPVCTEP 108 (211)
T ss_pred EEEEEeCCChhHHHHHHHHHHHH--------hCCCEEEEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCCCcccCC
Confidence 55689999999999999888876 789999999999999999999999999999999999999999999 98
Q ss_pred CCCceee
Q 034136 92 EDGGISR 98 (103)
Q Consensus 92 ~gp~~~~ 98 (103)
+||..-+
T Consensus 109 ~gp~~y~ 115 (211)
T PRK13196 109 DAPAAYL 115 (211)
T ss_pred CCcccee
Confidence 9987654
No 6
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=99.82 E-value=1.6e-20 Score=141.61 Aligned_cols=81 Identities=31% Similarity=0.423 Sum_probs=59.8
Q ss_pred CceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceece
Q 034136 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (103)
Q Consensus 9 ~~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~p 88 (103)
.+..+ ...+|+|+++.|.+.+.+++++ .+||+|||+|+++||+.|+|||+|+|..|||+|||+|++|.+++
T Consensus 32 ~~~~v-~~~~lPV~~~~~~~~l~~~l~~--------~~PdlVIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~ 102 (202)
T PF01470_consen 32 GGAEV-HTRELPVSYEKAFEALEELLEE--------HQPDLVIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEP 102 (202)
T ss_dssp TTEEE-EEEEE-SSHHHHHHHHHHHHHH--------H--SEEEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-
T ss_pred CCceE-EEEEecCchHhHHHHHHHHHHh--------cCCcEEEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCcc
Confidence 34444 5789999999999999888877 68999999999999999999999999999999999999999999
Q ss_pred eecCCCceee
Q 034136 89 VVLEDGGISR 98 (103)
Q Consensus 89 I~~~gp~~~~ 98 (103)
|+++||..-+
T Consensus 103 i~~~gp~~~~ 112 (202)
T PF01470_consen 103 IVPDGPEAYF 112 (202)
T ss_dssp SSTTS-SEEE
T ss_pred ccCCCcccee
Confidence 9999998654
No 7
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=99.81 E-value=5.2e-20 Score=140.39 Aligned_cols=77 Identities=26% Similarity=0.291 Sum_probs=71.2
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (103)
Q Consensus 14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g 93 (103)
....+|+|+++.+.+.|.+++++ .+||+|||||+++||+.|+|||+|+|++|+|+|||+|++|.++||+++|
T Consensus 34 i~~~~lPV~~~~~~~~l~~~l~~--------~~Pd~vi~~G~a~g~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~g 105 (212)
T TIGR00504 34 VVAEILPNTFFEAIEALQQAIDE--------IEPDIVIMLGLAPGRSMITVERVAINVNDARIPDNAGEQPIDEPIVPDG 105 (212)
T ss_pred EEEEEeCCChHHHHHHHHHHHHH--------HCCCEEEEeccCCCcCceeeEEeEeccCcCCCCCCCCCccCCCcccCCC
Confidence 34577999999999999898876 7899999999999999999999999999999999999999999999999
Q ss_pred Cceee
Q 034136 94 GGISR 98 (103)
Q Consensus 94 p~~~~ 98 (103)
|..-+
T Consensus 106 p~~~~ 110 (212)
T TIGR00504 106 PAAYF 110 (212)
T ss_pred Cceee
Confidence 97653
No 8
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.77 E-value=5.5e-19 Score=134.86 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=69.5
Q ss_pred eEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCCC
Q 034136 15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDG 94 (103)
Q Consensus 15 ~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~gp 94 (103)
...+|+|+++.+.+.|.+++++ .+||+|||||+++||+.|+|||+|+|..|+++|||+|++|.++||+++||
T Consensus 38 ~~~~lPV~y~~~~~~l~~~l~~--------~~Pd~vih~G~a~~~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp 109 (215)
T PRK13197 38 IKRQLPTVFGKSAEVLKEAIEE--------VQPDAVICIGQAGGRTDITPERVAINIDDARIPDNEGNQPIDEPIVEDGP 109 (215)
T ss_pred EEEEECCChHHHHHHHHHHHHH--------hCCCEEEEeccCCCCCcEEeEeeecccCCccCCCCCCCCcCCCcccCCCC
Confidence 4468999999999999888866 78999999999999999999999999999999999999999999999999
Q ss_pred ce
Q 034136 95 GI 96 (103)
Q Consensus 95 ~~ 96 (103)
..
T Consensus 110 ~~ 111 (215)
T PRK13197 110 AA 111 (215)
T ss_pred ce
Confidence 75
No 9
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=99.70 E-value=4.4e-17 Score=121.11 Aligned_cols=77 Identities=27% Similarity=0.288 Sum_probs=70.5
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (103)
Q Consensus 14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g 93 (103)
....+|+|+++.+.+.+.+++++ .+|+++||||++++++.|++||+|+|..++++|||+|++|.++||.++|
T Consensus 36 i~~~~lpv~y~~~~~~~~~~~~~--------~~pd~vlhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~g 107 (194)
T cd00501 36 VVGLELPVVFQKAVEVLPELIEE--------HKPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGG 107 (194)
T ss_pred EEEEEcCccHHHHHHHHHHHHHH--------hCCCEEEEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccCCC
Confidence 34568999999999999888766 7899999999999999999999999999999999999999999999999
Q ss_pred Cceee
Q 034136 94 GGISR 98 (103)
Q Consensus 94 p~~~~ 98 (103)
|..-.
T Consensus 108 ~~~~~ 112 (194)
T cd00501 108 PAAYF 112 (194)
T ss_pred CCeee
Confidence 97643
No 10
>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00035 Score=54.41 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=57.7
Q ss_pred cccCCCCCceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEe------------
Q 034136 2 LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV------------ 69 (103)
Q Consensus 2 ~~~~~~~~~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvai------------ 69 (103)
++++|+++.+....|+.++...+.+.+-+++ .. ...||+|..+....+++|+.|+
T Consensus 46 ~k~~~~s~~l~~~~~~sy~~v~~~i~e~~~~------------~~-~~aIhl~sh~~knti~i~~~af~~gy~~~d~~g~ 112 (213)
T KOG4755|consen 46 VKKGGVSKYLCFKMCTSYETVDEIILELWEE------------HL-QSAIHLGSHSQKNTIQIEQSAFSSGYTQKDKCGK 112 (213)
T ss_pred HHcCCceecceecceechhhHhHHHHHhhcc------------ce-eEEEEecccccCcEEEEEEecccCCccchhhccc
Confidence 4556678888888888555444444433322 33 6778888888777788887777
Q ss_pred ----eccCCCCCCCCCCCceeceeecCCCc
Q 034136 70 ----NEATFLCPDQLGWQPQQIPVVLEDGG 95 (103)
Q Consensus 70 ----N~~dfriPDn~G~qP~~~pI~~~gp~ 95 (103)
|.+.|+.||+-||++++-+++...-+
T Consensus 113 vp~~nkv~~~~~d~~~~s~i~c~~vv~~v~ 142 (213)
T KOG4755|consen 113 VPEGNKVKCDGPDTGGRSCINCEIVVKDVN 142 (213)
T ss_pred ccCCceeEeccccccccccccHHHHHHhhh
Confidence 77888999999999999888765443
No 11
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.70 E-value=0.0034 Score=47.40 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=54.2
Q ss_pred EEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136 18 VLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (103)
Q Consensus 18 VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g 93 (103)
=+++|++.+.+.+.++- + .+|+++||||.++-...|.+|+.|+-- -+.-||-.|+.|.+-.+--++
T Consensus 62 K~~~sYe~V~ekvpel~-~--------~~~~~viHL~~Hs~kNtI~ieq~AFsd-GY~~~D~nG~vPegnkv~~~~ 127 (166)
T PF06162_consen 62 KMEVSYEEVDEKVPELW-K--------EQPDFVIHLASHSVKNTIYIEQKAFSD-GYCQPDKNGCVPEGNKVKCES 127 (166)
T ss_pred eccchHHHHHHHhHHHH-h--------hCCCeEEEecCCCCcceEEEEehhhcC-CCcCCCCCCcCCCCCeeccCc
Confidence 67888888888885544 2 469999999999999999999999853 367799999999998884443
No 12
>PRK07077 hypothetical protein; Provisional
Probab=42.31 E-value=36 Score=26.62 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.9
Q ss_pred CCccEEEEeeecCCCcc
Q 034136 45 NEQVIWIHVGVNSGSSK 61 (103)
Q Consensus 45 ~~p~~vl~lG~a~gr~~ 61 (103)
.+++.+|.+|.+||-..
T Consensus 52 ~~~~~vIs~G~AGgL~p 68 (238)
T PRK07077 52 RGCAGIVSFGVAGGLDP 68 (238)
T ss_pred cCCCEEEEEEeccccCC
Confidence 77999999999998754
No 13
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=41.05 E-value=37 Score=25.81 Aligned_cols=18 Identities=22% Similarity=0.232 Sum_probs=15.6
Q ss_pred CCCccEEEEeeecCCCcc
Q 034136 44 NNEQVIWIHVGVNSGSSK 61 (103)
Q Consensus 44 ~~~p~~vl~lG~a~gr~~ 61 (103)
+.+|+.+|++|.+|+-..
T Consensus 66 ~f~~~~II~~G~AG~l~~ 83 (233)
T PRK14697 66 KFDVDAIINTGVAGGLHP 83 (233)
T ss_pred hcCCCEEEEEecccCCCC
Confidence 378999999999999753
No 14
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.81 E-value=15 Score=31.36 Aligned_cols=55 Identities=22% Similarity=0.435 Sum_probs=41.8
Q ss_pred eecccchHHHHHHHHHHhhcc--------cCC------CCCccEEEEeeecCCCcccceeeEEeeccCC
Q 034136 20 EAAGDGALPTLLKTLESSISQ--------TNT------NNEQVIWIHVGVNSGSSKFALERRAVNEATF 74 (103)
Q Consensus 20 eVs~~~a~~~L~~~ie~~~~~--------~~~------~~~p~~vl~lG~a~gr~~i~lErvaiN~~df 74 (103)
+|||+|+.+.|.+.||..++. ++. +....++||-|...|-..|---|.+-+..-|
T Consensus 186 DVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF 254 (408)
T COG1219 186 DVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGF 254 (408)
T ss_pred ccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccc
Confidence 799999999999999987765 111 5567899999999888877766665554444
No 15
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=37.67 E-value=4.9 Score=26.94 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=13.5
Q ss_pred CCCceeceeecCCCceeeeeec
Q 034136 81 GWQPQQIPVVLEDGGISRSRQV 102 (103)
Q Consensus 81 G~qP~~~pI~~~gp~~~~~~~~ 102 (103)
|-+|.+|||+.-||..+..+|-
T Consensus 69 ~GePl~Epi~~~GpFVmnt~ee 90 (104)
T PF05726_consen 69 GGEPLNEPIVQYGPFVMNTREE 90 (104)
T ss_dssp EE----S--EEETTEEESSHHH
T ss_pred EccCCCCCEEEECCcccCCHHH
Confidence 5689999999999999988764
No 16
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=34.72 E-value=54 Score=24.59 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=15.0
Q ss_pred CCccEEEEeeecCCCcc
Q 034136 45 NEQVIWIHVGVNSGSSK 61 (103)
Q Consensus 45 ~~p~~vl~lG~a~gr~~ 61 (103)
.+|+++|.+|.+||-..
T Consensus 65 ~~p~~II~~G~aG~l~~ 81 (228)
T TIGR01704 65 CKPDVIINTGSAGGLAP 81 (228)
T ss_pred CCCCEEEEEeeccCCCC
Confidence 78999999999999653
No 17
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=33.25 E-value=59 Score=25.12 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=12.9
Q ss_pred CCccEEEEeeecCC
Q 034136 45 NEQVIWIHVGVNSG 58 (103)
Q Consensus 45 ~~p~~vl~lG~a~g 58 (103)
.+|+.+|.+|.|||
T Consensus 59 ~~pd~IIn~GvAGg 72 (212)
T PRK06026 59 DLPDLVVSLGSAGS 72 (212)
T ss_pred CCCCEEEEecccCC
Confidence 45999999999999
No 18
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=33.17 E-value=21 Score=25.72 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=31.9
Q ss_pred EEeecccchHHHHHHHHHHhhcccCCCCCccE-EEEeeecCCCcccceeeEEeecc
Q 034136 18 VLEAAGDGALPTLLKTLESSISQTNTNNEQVI-WIHVGVNSGSSKFALERRAVNEA 72 (103)
Q Consensus 18 VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~-vl~lG~a~gr~~i~lErvaiN~~ 72 (103)
-.-++|+.+...+ +.+++.+. ..+||+ +|++|.+.-...+++|+..-|+.
T Consensus 48 N~Gi~G~tt~~~~-~rl~~~l~----~~~pd~Vii~~GtND~~~~~~~~~~~~~l~ 98 (191)
T PRK10528 48 NASISGDTSQQGL-ARLPALLK----QHQPRWVLVELGGNDGLRGFPPQQTEQTLR 98 (191)
T ss_pred ecCcCcccHHHHH-HHHHHHHH----hcCCCEEEEEeccCcCccCCCHHHHHHHHH
Confidence 3446666666555 44444332 245665 89999999777777777766654
No 19
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=32.86 E-value=59 Score=24.97 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=15.4
Q ss_pred CCCccEEEEeeecCCCcc
Q 034136 44 NNEQVIWIHVGVNSGSSK 61 (103)
Q Consensus 44 ~~~p~~vl~lG~a~gr~~ 61 (103)
.-+|+++|++|.+||-..
T Consensus 66 ~f~~~~IIn~G~aG~l~~ 83 (236)
T PRK06714 66 EFQPDELFMTGICGSLSN 83 (236)
T ss_pred hCCCCEEEEEEcccCCCC
Confidence 378999999999999654
No 20
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=31.49 E-value=51 Score=24.62 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=35.4
Q ss_pred CCccEEEEeeecC--CCcccc-eeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136 45 NEQVIWIHVGVNS--GSSKFA-LERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (103)
Q Consensus 45 ~~p~~vl~lG~a~--gr~~i~-lErvaiN~~dfriPDn~G~qP~~~pI~~~g 93 (103)
.+||+++.+|-.. ...-+. ...-.+|+-..-.|..+|..|....|..+.
T Consensus 78 ~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~ 129 (190)
T TIGR00639 78 HEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGV 129 (190)
T ss_pred cCCCEEEEeCcchhCCHHHHhhccCCEEEEeCCcccCCCCccHHHHHHHcCC
Confidence 7899998877533 222232 233489999999999999999888776554
No 21
>PRK08236 hypothetical protein; Provisional
Probab=30.22 E-value=66 Score=24.40 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=14.9
Q ss_pred CCccEEEEeeecCCCcc
Q 034136 45 NEQVIWIHVGVNSGSSK 61 (103)
Q Consensus 45 ~~p~~vl~lG~a~gr~~ 61 (103)
.+|+.+|++|.+||-..
T Consensus 52 ~~p~~vI~~GvAGgl~~ 68 (212)
T PRK08236 52 APYDLVVSAGIAGGFPG 68 (212)
T ss_pred cCCCEEEEEecccCCCC
Confidence 38999999999999864
No 22
>PF07484 Collar: Phage Tail Collar Domain; InterPro: IPR011083 This entry is represented by a domain found in Bacteriophage T4, Gp12. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This region is occasionally found in conjunction with IPR005003 from INTERPRO. Most of the proteins appear to be phage tail proteins; however some appear to be involved in other processes. For instance the RhiB protein (Q03314 from SWISSPROT) from Rhizobium leguminosarum may be involved in plant-microbe interactions []. A related protein, microcystin related protein (MrpB, Q9L3N1 from SWISSPROT) is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate (P10930 from SWISSPROT) suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop [] and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologues but the intervening sequence is not. Much of the function of P10930 from SWISSPROT appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the collar and may bind SO4. The long unconserved region maybe due to domain swapping in and out of a loop or due to rapid evolution.; PDB: 1OCY_A 2XGF_C 1H6W_A.
Probab=30.18 E-value=20 Score=22.18 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=6.5
Q ss_pred cCCCCCCCCCCCc
Q 034136 72 ATFLCPDQLGWQP 84 (103)
Q Consensus 72 ~dfriPDn~G~qP 84 (103)
..|++||-+|.-|
T Consensus 45 ~~F~lPDlRG~~~ 57 (57)
T PF07484_consen 45 TTFNLPDLRGRFP 57 (57)
T ss_dssp SSBB--B-TT-EE
T ss_pred CCcCCCccCCCCC
Confidence 3589999999754
No 23
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=29.99 E-value=74 Score=24.45 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.6
Q ss_pred CCCccEEEEeeecCCCcc-cce
Q 034136 44 NNEQVIWIHVGVNSGSSK-FAL 64 (103)
Q Consensus 44 ~~~p~~vl~lG~a~gr~~-i~l 64 (103)
..+|++||.+|.+||... .++
T Consensus 67 ~~~p~~iI~~G~aGgl~~~~~i 88 (234)
T COG0775 67 KFSPDAVINTGSAGGLVSSLAI 88 (234)
T ss_pred hcCCCEEEEeeeccCcCCCCcc
Confidence 588999999999999876 443
No 24
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=27.02 E-value=41 Score=24.38 Aligned_cols=50 Identities=14% Similarity=0.136 Sum_probs=34.4
Q ss_pred CCccEEEEeeecC--CCcccce-eeEEeeccCCCCCCCCCCCceeceeecCCC
Q 034136 45 NEQVIWIHVGVNS--GSSKFAL-ERRAVNEATFLCPDQLGWQPQQIPVVLEDG 94 (103)
Q Consensus 45 ~~p~~vl~lG~a~--gr~~i~l-ErvaiN~~dfriPDn~G~qP~~~pI~~~gp 94 (103)
.+||++++.|=.. ...-++. ..-++|+-..-.|.-+|..|....|..+..
T Consensus 78 ~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~ 130 (181)
T PF00551_consen 78 LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPSLLPKYRGASPIQWAILNGEK 130 (181)
T ss_dssp TT-SEEEESS-SS---HHHHHHSTTSEEEEESSSTTTTBSSTHHHHHHHHTSS
T ss_pred hccceeehhhhHHHhhhhhhhcccccEEEEeecCCccCCCcchhhhhhcCCcc
Confidence 8899988877432 2222221 334799999999999999999888876554
No 25
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=26.08 E-value=39 Score=21.09 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=16.3
Q ss_pred CCCCCceeceeecCCCceeeee
Q 034136 79 QLGWQPQQIPVVLEDGGISRSR 100 (103)
Q Consensus 79 n~G~qP~~~pI~~~gp~~~~~~ 100 (103)
|.||+|...|...-++......
T Consensus 26 ~~GW~l~GsP~~t~~~~~~~~~ 47 (54)
T PF08410_consen 26 NEGWQLYGSPTYTFDGGGMICG 47 (54)
T ss_pred HcCCEecCCceEEECCCcEEEE
Confidence 6799999999887766544443
No 26
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4. This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The member from Thermus thermophilus HB8 is known to act as uracil-DNA glycosylase, an enzyme of DNA base excision repair. Its appearance as a domain of phage DNA polymerases could be consistent with uracil-DNA glycosylase activity.
Probab=26.06 E-value=68 Score=23.26 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=23.3
Q ss_pred cchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCc
Q 034136 24 DGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSS 60 (103)
Q Consensus 24 ~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~ 60 (103)
+.|.++|.+.|+. .+|.++|.+|...-+.
T Consensus 86 ~~c~~~l~~eI~~--------v~P~~Iv~lG~~a~~~ 114 (173)
T TIGR00758 86 EACAPYLVKQIEL--------IRPKVIICLGRTAAQS 114 (173)
T ss_pred HHHHHHHHHHHHh--------cCCCEEEEECHHHHHH
Confidence 4588899888866 6799999999876543
No 27
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=24.43 E-value=91 Score=25.82 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.1
Q ss_pred CCCccEEEEeeecCCCc
Q 034136 44 NNEQVIWIHVGVNSGSS 60 (103)
Q Consensus 44 ~~~p~~vl~lG~a~gr~ 60 (103)
..+|+.+|++|.|||-.
T Consensus 66 ~~~~~~ii~~G~aG~l~ 82 (459)
T PRK06698 66 KFDVDAIINTGVAGGLH 82 (459)
T ss_pred hcCCCEEEEEecccCCC
Confidence 37899999999999975
No 28
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=24.30 E-value=1.7e+02 Score=22.59 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=14.9
Q ss_pred CCCccEEEEeeecCCCc
Q 034136 44 NNEQVIWIHVGVNSGSS 60 (103)
Q Consensus 44 ~~~p~~vl~lG~a~gr~ 60 (103)
..+|+++|.+|.+|+-.
T Consensus 87 ~~~~~~II~~G~aG~l~ 103 (249)
T PLN02584 87 ALKPDLIINAGTAGGFK 103 (249)
T ss_pred hcCCCEEEEEecccCcC
Confidence 37899999999999954
No 29
>PRK05634 nucleosidase; Provisional
Probab=24.02 E-value=58 Score=24.08 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=15.3
Q ss_pred CCCccEEEEeeecCCCcc
Q 034136 44 NNEQVIWIHVGVNSGSSK 61 (103)
Q Consensus 44 ~~~p~~vl~lG~a~gr~~ 61 (103)
+.+|+.+|.+|.+|+-..
T Consensus 47 ~~~p~~iIn~G~AG~l~~ 64 (185)
T PRK05634 47 GVLPPRVVNIGTAGALRD 64 (185)
T ss_pred CCCCCEEEEeecccCCCc
Confidence 478999999999999554
No 30
>PF03167 UDG: Uracil DNA glycosylase superfamily; InterPro: IPR005122 This entry represents various uracil-DNA glycosylases and related DNA glycosylases (3.2.2 from EC), such as uracil-DNA glycosylase [], thermophilic uracil-DNA glycosylase [], G:T/U mismatch-specific DNA glycosylase (Mug) [], and single-strand selective monofunctional uracil-DNA glycosylase (SMUG1) []. These proteins have a 3-layer alpha/beta/alpha structure. Uracil-DNA glycosylases are DNA repair enzymes that excise uracil residues from DNA by cleaving the N-glycosylic bond, initiating the base excision repair pathway. Uracil in DNA can arise either through the deamination of cytosine to form mutagenic U:G mispairs, or through the incorporation of dUMP by DNA polymerase to form U:A pairs []. These aberrant uracil residues are genotoxic []. The sequence of uracil-DNA glycosylase is extremely well conserved [] in bacteria and eukaryotes as well as in herpes viruses. More distantly related uracil-DNA glycosylases are also found in poxviruses []. In eukaryotic cells, UNG activity is found in both the nucleus and the mitochondria. Human UNG1 protein is transported to both the mitochondria and the nucleus []. The N-terminal 77 amino acids of UNG1 seem to be required for mitochondrial localization, but the presence of a mitochondrial transit peptide has not been directly demonstrated. The most N-terminal conserved region contains an aspartic acid residue which has been proposed, based on X-ray structures [] to act as a general base in the catalytic mechanism. ; PDB: 1UI0_A 1UI1_A 2C2P_A 2C2Q_A 1MTL_B 1MWI_A 1MUG_A 1MWJ_A 1OKB_B 1OE6_A ....
Probab=22.96 E-value=96 Score=20.46 Aligned_cols=31 Identities=23% Similarity=0.114 Sum_probs=22.0
Q ss_pred ccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcc
Q 034136 23 GDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSK 61 (103)
Q Consensus 23 ~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~ 61 (103)
...+...|.+.|+- .+|.++|++|...-+.-
T Consensus 71 ~~~~~~~l~~~l~~--------~~p~iii~lG~~a~~~~ 101 (152)
T PF03167_consen 71 IKECEPFLEEELEI--------IKPKIIICLGKEAFKAL 101 (152)
T ss_dssp TTCSHHHHHHHHHH--------HSSSEEEEESHHHHHHH
T ss_pred HHhhhhhHHHHHHh--------cCCCEEEEEchHHHHHH
Confidence 44567778777755 56999999998755443
No 31
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=20.10 E-value=1.4e+02 Score=22.72 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=15.9
Q ss_pred CCccEEEEeeecCCCcccc
Q 034136 45 NEQVIWIHVGVNSGSSKFA 63 (103)
Q Consensus 45 ~~p~~vl~lG~a~gr~~i~ 63 (103)
.+|+.+|.+|.+|+-..+.
T Consensus 70 ~~~~~iI~~G~aG~l~~~~ 88 (218)
T PRK07164 70 YQIEIIINYGAVGSNINID 88 (218)
T ss_pred cCCCEEEEEEcccCcCCCC
Confidence 6799999999999984444
Done!