Query 034136
Match_columns 103
No_of_seqs 120 out of 261
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 17:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034136.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034136hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a2za_ c.56.4.1 (A:) Pyrrolid 99.8 1.9E-20 1.4E-24 140.3 7.3 77 14-98 37-113 (220)
2 d1iofa_ c.56.4.1 (A:) Pyrrolid 99.8 8.5E-19 6.2E-23 129.5 7.7 76 15-98 37-112 (208)
3 d1iu8a_ c.56.4.1 (A:) Pyrrolid 99.7 1.1E-18 7.7E-23 129.0 6.7 76 14-97 33-108 (206)
4 d1auga_ c.56.4.1 (A:) Pyrrolid 99.7 4.7E-18 3.4E-22 125.6 7.7 77 14-98 38-114 (210)
5 d2ch5a2 c.55.1.5 (A:1-117) N-a 33.7 12 0.00091 22.6 2.4 41 21-61 40-81 (117)
6 d2blna2 c.65.1.1 (A:1-203) Pol 29.9 11 0.0008 25.1 1.8 51 45-95 74-127 (203)
7 d1s3la_ d.159.1.7 (A:) Putativ 28.3 21 0.0015 22.1 2.9 16 45-60 26-41 (165)
8 d1uf3a_ d.159.1.6 (A:) Hypothe 27.3 17 0.0012 22.5 2.2 31 24-59 15-45 (228)
9 d1vk2a_ c.18.1.2 (A:) Thermoph 26.2 15 0.0011 24.0 1.9 32 23-62 102-133 (191)
10 d1c2ya_ c.16.1.1 (A:) Lumazine 24.6 45 0.0033 21.8 4.2 33 16-55 48-80 (155)
11 d2nxfa1 d.159.1.12 (A:3-322) U 24.3 21 0.0015 22.6 2.3 27 25-56 33-59 (320)
12 d2yvta1 d.159.1.6 (A:4-260) Un 23.2 25 0.0018 21.9 2.5 28 25-60 16-43 (257)
13 g1h6w.2 d.231.1.1 (A:328-396,B 21.5 15 0.0011 22.0 1.0 12 72-83 61-72 (79)
14 d1fmta2 c.65.1.1 (A:1-206) Met 21.3 26 0.0019 22.9 2.3 51 45-95 80-133 (206)
No 1
>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=99.81 E-value=1.9e-20 Score=140.28 Aligned_cols=77 Identities=26% Similarity=0.196 Sum_probs=71.6
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (103)
Q Consensus 14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g 93 (103)
....+|+|+++++.+.|.+++++ .+|++|||||+++||+.|++||+|+|+.|+++|||+|++|.++||.++|
T Consensus 37 i~~~~LPV~~~~~~~~l~~~~~~--------~~pd~vi~~G~a~~~~~i~lE~~A~N~~~~~~pDn~G~~p~~~~i~~~g 108 (220)
T d1a2za_ 37 VYGRVLPVSVKRATIELKRYLEE--------IKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDA 108 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSCTTS
T ss_pred EEEEEcceeHHHHHHHHHHHHHh--------CCceEEEEEeecCCCceeEEEEEEEeCCCCccccccCCccCCCCccCCC
Confidence 34689999999999999888877 7899999999999999999999999999999999999999999999999
Q ss_pred Cceee
Q 034136 94 GGISR 98 (103)
Q Consensus 94 p~~~~ 98 (103)
|..-+
T Consensus 109 p~~~~ 113 (220)
T d1a2za_ 109 PLAYM 113 (220)
T ss_dssp CSEEE
T ss_pred Cceee
Confidence 98644
No 2
>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=99.75 E-value=8.5e-19 Score=129.51 Aligned_cols=76 Identities=33% Similarity=0.284 Sum_probs=71.1
Q ss_pred eEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCCC
Q 034136 15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDG 94 (103)
Q Consensus 15 ~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~gp 94 (103)
...+|||+++++.+.+.+++++ .+||++||||++++|+.|+|||+|+|..++++|||+|++|.+++|+++||
T Consensus 37 ~~~~LpV~~~~~~~~l~~l~~~--------~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~g~ 108 (208)
T d1iofa_ 37 FGRVLPVVFGKAKEVLEKTLEE--------IKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGAP 108 (208)
T ss_dssp EEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSSTTSC
T ss_pred EEEecceeHHHHHHHHHHHHHh--------CCCcEEEEEeecCCcceEEeEeEEeccCCCccCCccCCcCCCCCccCCCc
Confidence 5689999999999999888876 78999999999999999999999999999999999999999999999999
Q ss_pred ceee
Q 034136 95 GISR 98 (103)
Q Consensus 95 ~~~~ 98 (103)
..-+
T Consensus 109 ~~~~ 112 (208)
T d1iofa_ 109 TAYF 112 (208)
T ss_dssp SEEE
T ss_pred ceee
Confidence 8654
No 3
>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.74 E-value=1.1e-18 Score=128.98 Aligned_cols=76 Identities=29% Similarity=0.322 Sum_probs=71.1
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (103)
Q Consensus 14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g 93 (103)
....+|+|+++++.+.+.+.+++ .+|++|||||++++++.|+||++|+|..++++|||+|++|.+++|.++|
T Consensus 33 i~~~~LpV~~~~~~~~~~~~~~~--------~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~g 104 (206)
T d1iu8a_ 33 VVGEILPVSFKRAREKLLKVLDD--------VRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVEGG 104 (206)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTC
T ss_pred EEEEEeeccHHHHHHHHHHHHHh--------cCCcEEEEEEecCCccceeeEEEEEecCCCccccCCCCCCCCCcccCCC
Confidence 46789999999999999888877 7899999999999999999999999999999999999999999999999
Q ss_pred Ccee
Q 034136 94 GGIS 97 (103)
Q Consensus 94 p~~~ 97 (103)
|..-
T Consensus 105 ~~~~ 108 (206)
T d1iu8a_ 105 PAAY 108 (206)
T ss_dssp CSEE
T ss_pred ccce
Confidence 9764
No 4
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=99.72 E-value=4.7e-18 Score=125.63 Aligned_cols=77 Identities=21% Similarity=0.162 Sum_probs=71.5
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (103)
Q Consensus 14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g 93 (103)
....+|+|+.+++.+.+.+++++ .+|++|||||++++++.|++||+|+|+.++++|||+|++|.+++|.++|
T Consensus 38 i~~~~lpV~~~~~~~~~~~~~~~--------~~p~~vih~G~~~~~~~i~lE~~A~N~~~~~~pDn~G~~p~~~~i~~~g 109 (210)
T d1auga_ 38 IVSEQVPTVFYKSLAVLREAIKK--------HQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGG 109 (210)
T ss_dssp EEEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSBEEBSEEESCBCCSSCCTTSCCCCSBCSSTTS
T ss_pred EEEEEccccHHHHHHHHHHHHHh--------CCCcEEEEEEecCCcceEEeeeEeeccCcccccccCCCCCCCCcccCCC
Confidence 35689999999999999888877 7899999999999999999999999999999999999999999999999
Q ss_pred Cceee
Q 034136 94 GGISR 98 (103)
Q Consensus 94 p~~~~ 98 (103)
|..-+
T Consensus 110 ~~~~~ 114 (210)
T d1auga_ 110 PAAYW 114 (210)
T ss_dssp CSEEE
T ss_pred CceeE
Confidence 97544
No 5
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.72 E-value=12 Score=22.59 Aligned_cols=41 Identities=5% Similarity=0.075 Sum_probs=26.0
Q ss_pred ecccchHHHHHHHHHHhhcc-cCCCCCccEEEEeeecCCCcc
Q 034136 21 AAGDGALPTLLKTLESSISQ-TNTNNEQVIWIHVGVNSGSSK 61 (103)
Q Consensus 21 Vs~~~a~~~L~~~ie~~~~~-~~~~~~p~~vl~lG~a~gr~~ 61 (103)
++.+.+.+.|.++++.++.+ ..+...+...+++|.+|....
T Consensus 40 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~i~~i~~GlAG~~~~ 81 (117)
T d2ch5a2 40 IGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE 81 (117)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTTCH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCccccEEEEEeeccCcc
Confidence 45566777777777665543 222344667899999996443
No 6
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.90 E-value=11 Score=25.14 Aligned_cols=51 Identities=16% Similarity=0.022 Sum_probs=36.9
Q ss_pred CCccEEEEeeecCCCcc--cce-eeEEeeccCCCCCCCCCCCceeceeecCCCc
Q 034136 45 NEQVIWIHVGVNSGSSK--FAL-ERRAVNEATFLCPDQLGWQPQQIPVVLEDGG 95 (103)
Q Consensus 45 ~~p~~vl~lG~a~gr~~--i~l-ErvaiN~~dfriPDn~G~qP~~~pI~~~gp~ 95 (103)
.+||+++++|-..=-+. ++. ..-++|+-....|..+|.-|..-.|..+...
T Consensus 74 ~~~Dlii~~g~~~ii~~~il~~~~~~~iN~H~slLP~yrG~~p~~wai~~g~~~ 127 (203)
T d2blna2 74 LSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETE 127 (203)
T ss_dssp TCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSCTTTTEESCHHHHHHHTTCSE
T ss_pred hcccceeeeecccchhcccchhhHHHHHHHhhhcchhhhhhhhhhhhhhccccc
Confidence 78999999984322222 222 2347999999999999999998888765543
No 7
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}
Probab=28.29 E-value=21 Score=22.14 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=12.8
Q ss_pred CCccEEEEeeecCCCc
Q 034136 45 NEQVIWIHVGVNSGSS 60 (103)
Q Consensus 45 ~~p~~vl~lG~a~gr~ 60 (103)
.++|.++|+|=..+..
T Consensus 26 ~~~D~ii~~GD~~~~~ 41 (165)
T d1s3la_ 26 ENVETVIHCGDFVSLF 41 (165)
T ss_dssp SCCSEEEECSCCCSTH
T ss_pred cCCCEEEECCCccCHH
Confidence 6899999999766543
No 8
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=27.26 E-value=17 Score=22.51 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCC
Q 034136 24 DGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGS 59 (103)
Q Consensus 24 ~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr 59 (103)
-|-++.|.+.++.+. +.++|+|+++|=--.+
T Consensus 15 hg~~eale~~~~~~~-----~~~~D~vv~~GDl~~~ 45 (228)
T d1uf3a_ 15 MGDLEALEKFVKLAP-----DTGADAIALIGNLMPK 45 (228)
T ss_dssp TTCHHHHHHHHTHHH-----HHTCSEEEEESCSSCT
T ss_pred CCCHHHHHHHHHHHh-----hcCCCEEEECCCCCCC
Confidence 466666755554422 2679999999975443
No 9
>d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermotoga maritima [TaxId: 2336]}
Probab=26.16 E-value=15 Score=24.03 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=24.6
Q ss_pred ccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCccc
Q 034136 23 GDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKF 62 (103)
Q Consensus 23 ~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i 62 (103)
.+.|..+|.+.|+- .+|.++|++|..+-++-+
T Consensus 102 i~~C~p~L~~ei~~--------i~Pkiii~lG~~a~~~ll 133 (191)
T d1vk2a_ 102 QAACGHFLLAQIEI--------INPDVIVALGATALSFFV 133 (191)
T ss_dssp HHHHHHHHHHHHHH--------HCCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHHHhh--------hccceeeeeccHHHHHHh
Confidence 45588899888866 679999999987655444
No 10
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=24.61 E-value=45 Score=21.80 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=19.7
Q ss_pred EEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeee
Q 034136 16 CTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGV 55 (103)
Q Consensus 16 ~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~ 55 (103)
+++++|.|-==++...+.+-+ ..++|.+|+||.
T Consensus 48 i~~~~VPGa~EiP~~~~~l~~-------~~~~daiIaLG~ 80 (155)
T d1c2ya_ 48 IDVVWVPGAYELGVTAQALGK-------SGKYHAIVCLGA 80 (155)
T ss_dssp CEEEEESSHHHHHHHHHHHHH-------TTCCSEEEEEEE
T ss_pred cEEEEeccHHHHHHHHHHHHh-------cCCCCeEEEEEE
Confidence 566677643333333333322 367999999996
No 11
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=24.34 E-value=21 Score=22.59 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHhhcccCCCCCccEEEEeeec
Q 034136 25 GALPTLLKTLESSISQTNTNNEQVIWIHVGVN 56 (103)
Q Consensus 25 ~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a 56 (103)
.++..|.++++. +. ..+||+||+.|=-
T Consensus 33 ~~~~~l~~~v~~-i~----~~~~DfVv~~GDl 59 (320)
T d2nxfa1 33 GSADLLRDAVLQ-WR----RERVQCVVQLGDI 59 (320)
T ss_dssp HHHHHHHHHHHH-HH----HTTCSEEEECSCC
T ss_pred HHHHHHHHHHHH-Hh----hCCCCEEEECCCC
Confidence 455666665544 22 3779999999953
No 12
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]}
Probab=23.21 E-value=25 Score=21.88 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCc
Q 034136 25 GALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSS 60 (103)
Q Consensus 25 ~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~ 60 (103)
.+++.|.+.+.+ .+||+||+.|==....
T Consensus 16 ~~l~~l~~~~~~--------~~~D~vli~GDl~~~~ 43 (257)
T d2yvta1 16 DLLPKLKGVIAE--------KQPDILVVVGNILKNE 43 (257)
T ss_dssp GGHHHHHHHHHH--------HCCSEEEEESCCCCCH
T ss_pred HHHHHHHHHHhh--------cCCCEEEEecccCCCC
Confidence 455566565544 6799999999765443
No 13
>g1h6w.2 d.231.1.1 (A:328-396,B:518-527) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]}
Probab=21.54 E-value=15 Score=21.98 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=9.7
Q ss_pred cCCCCCCCCCCC
Q 034136 72 ATFLCPDQLGWQ 83 (103)
Q Consensus 72 ~dfriPDn~G~q 83 (103)
.+|++||-+|-.
T Consensus 61 ~tF~lPDlRG~~ 72 (79)
T g1h6w.2 61 SNPGLPDMRSLN 72 (79)
T ss_dssp SSBBCCBCCCCE
T ss_pred CcccCCCCCCce
Confidence 369999999954
No 14
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}
Probab=21.26 E-value=26 Score=22.90 Aligned_cols=51 Identities=24% Similarity=0.149 Sum_probs=37.1
Q ss_pred CCccEEEEeeecCCCccccee--e-EEeeccCCCCCCCCCCCceeceeecCCCc
Q 034136 45 NEQVIWIHVGVNSGSSKFALE--R-RAVNEATFLCPDQLGWQPQQIPVVLEDGG 95 (103)
Q Consensus 45 ~~p~~vl~lG~a~gr~~i~lE--r-vaiN~~dfriPDn~G~qP~~~pI~~~gp~ 95 (103)
.+||+++++|-..=-+.=-++ + -++|+-...+|..+|.-|..-.|.-+.+.
T Consensus 80 ~~~d~~v~~~~~~ii~~~il~~~k~g~iN~Hps~LP~yRG~~pi~wai~nge~~ 133 (206)
T d1fmta2 80 LQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAE 133 (206)
T ss_dssp TTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSE
T ss_pred hcceEEEeeccccccchhhHhcCCCCeeecCchhhHhhhhhhhhhhHHHcCCce
Confidence 689999988865532221111 3 38999999999999999988777766553
Done!