BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034139
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A6N|B Chain B, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|F Chain F, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|B Chain B, The Human Nucleosome Structure
pdb|3AFA|F Chain F, The Human Nucleosome Structure
pdb|3AV1|B Chain B, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|F Chain F, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|B Chain B, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|F Chain F, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AN2|B Chain B, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|F Chain F, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AYW|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 106
Score = 161 bits (408), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/82 (97%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 25 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 84
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 85 VTAMDVVYALKRQGRTLYGFGG 106
>pdb|1EQZ|D Chain D, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|H Chain H, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1F66|B Chain B, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|F Chain F, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1HQ3|D Chain D, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|H Chain H, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|D Chain D, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|H Chain H, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2CV5|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
pdb|2ARO|D Chain D, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|H Chain H, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|1U35|B Chain B, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|F Chain F, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|B Chain B, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|F Chain F, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|3NQU|B Chain B, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
pdb|3R45|B Chain B, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
pdb|4HGA|C Chain C, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 103
Score = 161 bits (408), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/82 (97%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 81
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82 VTAMDVVYALKRQGRTLYGFGG 103
>pdb|2HUE|C Chain C, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
pdb|3NQJ|B Chain B, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 84
Score = 161 bits (408), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 80/82 (97%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 3 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 62
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 63 VTAMDVVYALKRQGRTLYGFGG 84
>pdb|3AZL|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
Length = 106
Score = 161 bits (408), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 80/82 (97%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 25 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAQRKT 84
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 85 VTAMDVVYALKRQGRTLYGFGG 106
>pdb|1KX3|B Chain B, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|F Chain F, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|B Chain B, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|F Chain F, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|B Chain B, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|F Chain F, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1M18|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1P34|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1S32|B Chain B, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|F Chain F, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|B Chain B, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|F Chain F, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|BB Chain b, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|FF Chain f, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZLA|B Chain B, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|F Chain F, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|2FJ7|B Chain B, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|F Chain F, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2IO5|C Chain C, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NZD|B Chain B, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|F Chain F, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|B Chain B, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|F Chain F, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|B Chain B, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|F Chain F, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1C|B Chain B, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|F Chain F, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C9K|D Chain D, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|H Chain H, Model Of Histone Octamer Tubular Crystals
pdb|3KUY|B Chain B, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|F Chain F, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|B Chain B, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|F Chain F, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LEL|B Chain B, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|F Chain F, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|L Chain L, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|P Chain P, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3MGP|B Chain B, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|F Chain F, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|B Chain B, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|F Chain F, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|B Chain B, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|F Chain F, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|B Chain B, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|F Chain F, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3KXB|B Chain B, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|F Chain F, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|B Chain B, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|F Chain F, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|B Chain B, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|F Chain F, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|B Chain B, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|F Chain F, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|B Chain B, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|F Chain F, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|B Chain B, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|F Chain F, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|B Chain B, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|F Chain F, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|B Chain B, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|F Chain F, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|B Chain B, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|F Chain F, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|B Chain B, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|F Chain F, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|B Chain B, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|F Chain F, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|B Chain B, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|F Chain F, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|4H9N|B Chain B, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9O|B Chain B, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
pdb|4H9P|B Chain B, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9Q|B Chain B, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
pdb|4H9R|B Chain B, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 102
Score = 161 bits (408), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 80/82 (97%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 21 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 81 VTAMDVVYALKRQGRTLYGFGG 102
>pdb|3KWQ|B Chain B, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|F Chain F, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|4H9S|C Chain C, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|D Chain D, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 83
Score = 161 bits (408), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/82 (97%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 2 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 61
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 62 VTAMDVVYALKRQGRTLYGFGG 83
>pdb|1AOI|B Chain B, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|F Chain F, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 87
Score = 161 bits (407), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/82 (97%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 6 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 65
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 66 VTAMDVVYALKRQGRTLYGFGG 87
>pdb|2NQB|B Chain B, Drosophila Nucleosome Structure
pdb|2NQB|F Chain F, Drosophila Nucleosome Structure
Length = 103
Score = 161 bits (407), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/82 (97%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 81
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82 VTAMDVVYALKRQGRTLYGFGG 103
>pdb|3C1B|B Chain B, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|F Chain F, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 102
Score = 161 bits (407), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/82 (97%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 21 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 81 VTAMDVVYALKRQGRTLYGFGG 102
>pdb|2PYO|B Chain B, Drosophila Nucleosome Core
pdb|2PYO|F Chain F, Drosophila Nucleosome Core
Length = 102
Score = 161 bits (407), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/82 (97%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 21 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 81 VTAMDVVYALKRQGRTLYGFGG 102
>pdb|1P3P|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 160 bits (406), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGG+KRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 21 VLRDNIQGITKPAIRRLARRGGIKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 81 VTAMDVVYALKRQGRTLYGFGG 102
>pdb|3AZN|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 106
Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 25 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 84
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYAL+RQGRTLYGFGG
Sbjct: 85 VTAMDVVYALQRQGRTLYGFGG 106
>pdb|3AZM|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
Length = 106
Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+R+T
Sbjct: 25 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRQT 84
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 85 VTAMDVVYALKRQGRTLYGFGG 106
>pdb|3AZK|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
Length = 106
Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVL++FLENVIRDAVTYTEHA+RKT
Sbjct: 25 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLQVFLENVIRDAVTYTEHAKRKT 84
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 85 VTAMDVVYALKRQGRTLYGFGG 106
>pdb|3AZJ|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
Length = 106
Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGV+RISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 25 VLRDNIQGITKPAIRRLARRGGVQRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 84
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 85 VTAMDVVYALKRQGRTLYGFGG 106
>pdb|3AZI|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
Length = 106
Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 82/82 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGIT+PAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 25 VLRDNIQGITQPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 84
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 85 VTAMDVVYALKRQGRTLYGFGG 106
>pdb|1P3O|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 81/82 (98%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGG KRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 21 VLRDNIQGITKPAIRRLARRGGAKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 81 VTAMDVVYALKRQGRTLYGFGG 102
>pdb|1P3I|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 81/82 (98%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVK ISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 21 VLRDNIQGITKPAIRRLARRGGVKHISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 81 VTAMDVVYALKRQGRTLYGFGG 102
>pdb|1P3G|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 81/82 (98%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVK ISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 21 VLRDNIQGITKPAIRRLARRGGVKEISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 81 VTAMDVVYALKRQGRTLYGFGG 102
>pdb|1P3B|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 159 bits (401), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 81/82 (98%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVK ISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 21 VLRDNIQGITKPAIRRLARRGGVKAISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 81 VTAMDVVYALKRQGRTLYGFGG 102
>pdb|2HIO|D Chain D, Histone Octamer (Chicken), Chromosomal Protein
Length = 103
Score = 159 bits (401), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 81/82 (98%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 81
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQ RTLYGFGG
Sbjct: 82 VTAMDVVYALKRQERTLYGFGG 103
>pdb|4EO5|C Chain C, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 83
Score = 159 bits (401), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 81/82 (98%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 2 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 61
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQ RTLYGFGG
Sbjct: 62 VTAMDVVYALKRQPRTLYGFGG 83
>pdb|1P3F|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 158 bits (400), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 81/82 (98%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
VLRDNIQGITKPAIRRLARRGGVK ISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 21 VLRDNIQGITKPAIRRLARRGGVKCISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VTAMDVVYALKRQGRTLYGFGG
Sbjct: 81 VTAMDVVYALKRQGRTLYGFGG 102
>pdb|2YFW|B Chain B, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|D Chain D, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|F Chain F, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|H Chain H, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 103
Score = 151 bits (382), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/82 (90%), Positives = 79/82 (96%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
+LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEHA+RKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKT 81
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VT++DVVYALKRQGRTLYGFGG
Sbjct: 82 VTSLDVVYALKRQGRTLYGFGG 103
>pdb|1ID3|B Chain B, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|F Chain F, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 102
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/82 (89%), Positives = 79/82 (96%)
Query: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
+LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRD+VTYTEHA+RKT
Sbjct: 21 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT 80
Query: 82 VTAMDVVYALKRQGRTLYGFGG 103
VT++DVVYALKRQGRTLYGFGG
Sbjct: 81 VTSLDVVYALKRQGRTLYGFGG 102
>pdb|1HIO|D Chain D, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 76
Score = 149 bits (377), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 28 QGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV 87
QGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDV
Sbjct: 1 QGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDV 60
Query: 88 VYALKRQGRTLYGFGG 103
VYALKRQGRTLYGFGG
Sbjct: 61 VYALKRQGRTLYGFGG 76
>pdb|2YFV|B Chain B, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 74
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 71/74 (95%)
Query: 25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTA 84
DNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEHA+RKTVT+
Sbjct: 1 DNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTS 60
Query: 85 MDVVYALKRQGRTL 98
+DVVYALKRQGRTL
Sbjct: 61 LDVVYALKRQGRTL 74
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 60/63 (95%)
Query: 41 RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG 100
+GGVKRISGLIYEE R VLK FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRTLYG
Sbjct: 173 KGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYG 232
Query: 101 FGG 103
FGG
Sbjct: 233 FGG 235
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially
Unfolded Dimer Of The Centromere-specific Cse4/h4
Histone Variant
Length = 121
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/61 (85%), Positives = 57/61 (93%)
Query: 43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102
G KRISGLIYEE R VLK FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRTLYGFG
Sbjct: 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 120
Query: 103 G 103
G
Sbjct: 121 G 121
>pdb|3C9C|B Chain B, Structural Basis Of Histone H4 Recognition By P55
Length = 27
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 22 VLRDNIQGITKPAIRRLARRG 42
VLRDNIQGITKPAIRRLARRG
Sbjct: 7 VLRDNIQGITKPAIRRLARRG 27
>pdb|2XYI|B Chain B, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 20
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/20 (100%), Positives = 20/20 (100%)
Query: 27 IQGITKPAIRRLARRGGVKR 46
IQGITKPAIRRLARRGGVKR
Sbjct: 1 IQGITKPAIRRLARRGGVKR 20
>pdb|3CFV|E Chain E, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|F Chain F, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 18
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/18 (100%), Positives = 18/18 (100%)
Query: 25 DNIQGITKPAIRRLARRG 42
DNIQGITKPAIRRLARRG
Sbjct: 1 DNIQGITKPAIRRLARRG 18
>pdb|1KU5|A Chain A, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1KU5|B Chain B, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 70
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 35 IRRLARRGGVKRISGLIYEETRGVLKIFLEN----VIRDAVTYTEHARRKTVTAMDVVYA 90
+ RL R+ G +R+S E+ VL +LE + + AV + HA RKTV D+ A
Sbjct: 12 VDRLIRKAGAERVS----EQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLA 67
Query: 91 LK 92
+K
Sbjct: 68 IK 69
>pdb|3CFS|E Chain E, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 15
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 28 QGITKPAIRRLARRG 42
QGITKPAIRRLARRG
Sbjct: 1 QGITKPAIRRLARRG 15
>pdb|1TAF|B Chain B, Drosophila Tbp Associated Factors Dtafii42DTAFII62
HETEROTETRAMER
Length = 70
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVV 88
I+ +++ +A GV +S +E + I L+ +++DA + HA+R+ ++ D+
Sbjct: 6 SISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDID 65
Query: 89 YALK 92
+LK
Sbjct: 66 MSLK 69
>pdb|3B0C|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-W Complex, Crystal Form I
pdb|3B0D|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-W Complex, Crystal Form Ii
pdb|3B0D|B Chain B, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-W Complex, Crystal Form Ii
Length = 111
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 62 FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 95
+ + + D Y++HA RKTV DV ++RQG
Sbjct: 40 YFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG 73
>pdb|3VH5|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form I
pdb|3VH6|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form Ii
Length = 111
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 62 FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 95
+ + + D Y++HA RKTV DV ++RQG
Sbjct: 40 YFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG 73
>pdb|1HTA|A Chain A, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 69
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 35 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92
I R+ + G +R+S VL+ E + +AV +HA RKT+ A D+ A K
Sbjct: 9 IGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 66
>pdb|1B67|A Chain A, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 68
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 35 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92
I R+ + G +R+S VL+ E + +AV +HA RKT+ A D+ A K
Sbjct: 8 IGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65
>pdb|1BFM|A Chain A, Histone B From Methanothermus Fervidus
pdb|1BFM|B Chain B, Histone B From Methanothermus Fervidus
pdb|1A7W|A Chain A, Crystal Structure Of The Histone Hmfb From
Methanothermus Fervidus
Length = 69
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 37 RLARRGGVKRISGLIYEETRGVLKIFLENVIRD----AVTYTEHARRKTVTAMDVVYALK 92
R+ + G +R+S ++ R L LE + RD A+ HA RKT+ A D+ A++
Sbjct: 10 RIIKDAGAERVS----DDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDIELAVR 65
Query: 93 R 93
R
Sbjct: 66 R 66
>pdb|3B0B|B Chain B, Crystal Structure Of The Chicken Cenp-SCENP-X Complex
pdb|3B0B|A Chain A, Crystal Structure Of The Chicken Cenp-SCENP-X Complex
Length = 107
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 63 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 98
EN RD + HA+R T+T+ DV +R L
Sbjct: 56 CENFARDLEXFARHAKRSTITSEDVKLLARRSNSLL 91
>pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Variant Of
Histone Hmfb From Methanothermus Fervidus
Length = 69
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 35 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD----AVTYTEHARRKTVTAMDVVYA 90
I R+ + G +R+S ++ R L LE RD A+ HA RKT+ A D+ A
Sbjct: 8 IGRIIKDAGAERVS----DDARITLAKILEEXGRDIASEAIKLARHAGRKTIKAEDIELA 63
Query: 91 LKR 93
++R
Sbjct: 64 VRR 66
>pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda
Prote (Mortalin)
pdb|3N8E|B Chain B, Substrate Binding Domain Of The Human Heat Shock 70kda
Prote (Mortalin)
Length = 182
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80
A+ G R ++ + + G+ K +EN++++A Y E RRK
Sbjct: 119 AKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRK 160
>pdb|3VH5|A Chain A, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form I
pdb|3VH6|A Chain A, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form Ii
Length = 140
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 64 ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 98
EN RD + HA+R T+T+ DV +R L
Sbjct: 57 ENFARDLEMFARHAKRSTITSEDVKLLARRSNSLL 91
>pdb|3CFU|A Chain A, Crystal Structure Of The Yjha Protein From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr562
pdb|3CFU|B Chain B, Crystal Structure Of The Yjha Protein From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr562
Length = 159
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 29 GITKPAIRRLAR--RGGVKRISGLIYEET--------RGVLKIFLENVIRDAVTYT---E 75
G T + ++ R +G + G + EET R ++++ EN+ D+++Y
Sbjct: 11 GHTNFTVNKVDRVQKGEYXNVGGAVNEETKTIKDDEERLIIEVTXENIGEDSISYNFIGF 70
Query: 76 HARRKTVTAMDVVYALKRQGRTLYG 100
R K ++ V++++ +GR L G
Sbjct: 71 DLRDKNDQSVRPVFSIEEKGRILXG 95
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR---RKTVTAMDVVYALKRQGRTL 98
+ ISG + E+T K F+ VI+D + T R K V A D++Y + + R L
Sbjct: 474 AIGSISGTMSEDTE---KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFL 529
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR---RKTVTAMDVVYALKRQGRTL 98
+ ISG + E+T K F+ VI+D + T R K V A D++Y + + R L
Sbjct: 476 AIGSISGTMSEDTE---KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFL 531
>pdb|1TAF|A Chain A, Drosophila Tbp Associated Factors Dtafii42DTAFII62
HETEROTETRAMER
Length = 68
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 62 FLENVIRDAVTYTEHARRKTVTAMDV 87
++ +++ DA Y HAR+KT+ DV
Sbjct: 34 YVTSILDDAKVYANHARKKTIDLDDV 59
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 44 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA 77
VK + Y+E + +K E ++D V YTE A
Sbjct: 257 VKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDA 290
>pdb|3OA6|G Chain G, Human Msl3 Chromodomain Bound To Dna And H4k20me1
Peptide
Length = 24
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/11 (100%), Positives = 11/11 (100%)
Query: 22 VLRDNIQGITK 32
VLRDNIQGITK
Sbjct: 13 VLRDNIQGITK 23
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,158,437
Number of Sequences: 62578
Number of extensions: 66939
Number of successful extensions: 277
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 53
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)