BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034140
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CIB6|TM230_MOUSE Transmembrane protein 230 OS=Mus musculus GN=Tmem230 PE=1 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 5/78 (6%)
Query: 28 PIKEIVLAVSLLVFGTFGIICGTIMAY---NRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
P K I LA L + GTF II G+++ ++ G DRA V ++G ++F+PGFY+ RI
Sbjct: 42 PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99
Query: 85 AYYAYKGYKGFSFNNIPS 102
AYYA KGY+G+S+++IP
Sbjct: 100 AYYASKGYRGYSYDDIPD 117
>sp|Q5ZLH4|TM230_CHICK Transmembrane protein 230 OS=Gallus gallus GN=TMEM230 PE=2 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 53/78 (67%), Gaps = 5/78 (6%)
Query: 28 PIKEIVLAVSLLVFGTFGIICGTIMA---YNRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
P K I LAV L + GTF II G ++ ++ G DRA V ++G ++F+PGFY+ RI
Sbjct: 42 PYKAIALAVVLFMIGTFLIIIGALLLAGYISKGGTDRAIPVL--IIGILVFLPGFYHLRI 99
Query: 85 AYYAYKGYKGFSFNNIPS 102
AYYA KGY+G+S+++IP
Sbjct: 100 AYYASKGYRGYSYDDIPD 117
>sp|Q5BJP5|TM230_RAT Transmembrane protein 230 OS=Rattus norvegicus GN=Tmem230 PE=2 SV=1
Length = 120
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 28 PIKEIVLAVSLLVFGTFGIICGTIMAY---NRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
P K I LA L + GTF II G+++ ++ G DRA V ++G ++F+PGFY+ RI
Sbjct: 42 PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99
Query: 85 AYYAYKGYKGFSFNNIP 101
AYYA KGY+G+S+++IP
Sbjct: 100 AYYASKGYRGYSYDDIP 116
>sp|Q5R8X3|TM230_PONAB Transmembrane protein 230 OS=Pongo abelii GN=TMEM230 PE=2 SV=1
Length = 120
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 5/78 (6%)
Query: 28 PIKEIVLAVSLLVFGTFGIICGTIMAY---NRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
P K I LA L + G F II G+++ ++ G DRA V ++G ++F+PGFY+ RI
Sbjct: 42 PYKAIALATGLFLIGAFLIIIGSLLLSGYISKGGADRAIPVL--IIGILVFLPGFYHLRI 99
Query: 85 AYYAYKGYKGFSFNNIPS 102
AYYA KGY+G+S+++IP
Sbjct: 100 AYYASKGYRGYSYDDIPD 117
>sp|Q96A57|TM230_HUMAN Transmembrane protein 230 OS=Homo sapiens GN=TMEM230 PE=1 SV=1
Length = 120
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 5/78 (6%)
Query: 28 PIKEIVLAVSLLVFGTFGIICGTIMAY---NRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
P K I LA L + G F II G+++ ++ G DRA V ++G ++F+PGFY+ RI
Sbjct: 42 PYKAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99
Query: 85 AYYAYKGYKGFSFNNIPS 102
AYYA KGY+G+S+++IP
Sbjct: 100 AYYASKGYRGYSYDDIPD 117
>sp|Q5E975|TM230_BOVIN Transmembrane protein 230 OS=Bos taurus GN=TMEM230 PE=2 SV=1
Length = 120
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 5/78 (6%)
Query: 28 PIKEIVLAVSLLVFGTFGIICGTIMA---YNRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
P K I LA L + G F II G+++ ++ G DRA V ++G ++F+PGFY+ RI
Sbjct: 42 PYKAIALATVLFLIGAFLIIIGSLLLAGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99
Query: 85 AYYAYKGYKGFSFNNIPS 102
AYYA KGY+G+S+++IP
Sbjct: 100 AYYASKGYRGYSYDDIPD 117
>sp|Q05B54|TM134_BOVIN Transmembrane protein 134 OS=Bos taurus GN=TMEM134 PE=2 SV=2
Length = 195
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 67 FAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 101
F V G +L +PG Y+ Y A KG++GF F +P
Sbjct: 157 FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLP 191
>sp|Q9H6X4|TM134_HUMAN Transmembrane protein 134 OS=Homo sapiens GN=TMEM134 PE=2 SV=1
Length = 195
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 62 AHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 101
+ +FF V G +L +PG Y+ Y A KG++GF F +P
Sbjct: 153 SSAIFF-VPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLP 191
>sp|Q8R0J4|TM134_MOUSE Transmembrane protein 134 OS=Mus musculus GN=Tmem134 PE=2 SV=1
Length = 195
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 62 AHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 101
+ +FF V G +L +PG Y+ Y A KG +GF F +P
Sbjct: 153 SSAIFF-VPGILLLVPGVYHVIFIYCAVKGRRGFQFFYLP 191
>sp|P30961|YCIB_BRAJA Probable intracellular septation protein A OS=Bradyrhizobium
japonicum (strain USDA 110) GN=bll0472 PE=3 SV=2
Length = 200
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 17 METSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLG 71
M SY V PI IV V +LVFGT ++ + +V +G+F A+LG
Sbjct: 46 MIASYVVTRHIPIMAIVTGVIVLVFGTLTLVLHD-ETFIKVKPTIIYGLFAAILG 99
>sp|P45037|CCMF_HAEIN Cytochrome c-type biogenesis protein CcmF OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ccmF PE=3
SV=1
Length = 648
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 33 VLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGY 92
+LA SL + GTF + G +++ + D G++ +L ++ + G +A YAYKG
Sbjct: 281 ILAFSLCLLGTFLVRSGILVSVHAFASDPTRGLY--ILAYLVVVIG---GSLALYAYKGS 335
Query: 93 KGFSFNN 99
+ S +N
Sbjct: 336 QIRSRDN 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.145 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,343,823
Number of Sequences: 539616
Number of extensions: 1345949
Number of successful extensions: 4026
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 4011
Number of HSP's gapped (non-prelim): 36
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)