Query 034140
Match_columns 103
No_of_seqs 101 out of 126
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 10:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4753 Predicted membrane pro 100.0 9.1E-39 2E-43 227.2 2.6 103 1-103 19-123 (124)
2 PF05915 DUF872: Eukaryotic pr 100.0 4.2E-34 9.1E-39 201.6 9.8 77 26-102 38-114 (115)
3 PF11239 DUF3040: Protein of u 93.0 0.32 6.9E-06 31.8 5.1 60 11-80 19-80 (82)
4 COG1575 MenA 1,4-dihydroxy-2-n 89.9 1 2.3E-05 36.7 6.0 71 3-82 66-138 (303)
5 PF04156 IncA: IncA protein; 89.1 0.88 1.9E-05 33.1 4.7 53 30-82 3-60 (191)
6 PF04713 Pox_I5: Poxvirus prot 88.7 3.1 6.8E-05 27.9 6.6 60 27-86 2-71 (77)
7 PF11381 DUF3185: Protein of u 88.3 0.37 8E-06 30.6 1.9 47 34-80 3-57 (59)
8 PRK10591 hypothetical protein; 86.6 2.7 5.8E-05 29.1 5.5 54 36-91 12-70 (92)
9 PF14927 Neurensin: Neurensin 85.7 1.4 2.9E-05 32.4 3.9 26 27-52 42-68 (140)
10 PF14145 YrhK: YrhK-like prote 83.6 3.1 6.7E-05 26.1 4.4 43 34-78 7-49 (59)
11 PF07214 DUF1418: Protein of u 82.9 5.2 0.00011 27.8 5.6 53 37-91 13-70 (96)
12 PHA02974 putative IMV membrane 80.8 7.9 0.00017 26.2 5.7 57 30-86 5-72 (81)
13 PF03729 DUF308: Short repeat 78.9 2.4 5.2E-05 25.4 2.6 44 41-87 2-45 (72)
14 PF11384 DUF3188: Protein of u 77.0 5.2 0.00011 24.4 3.7 38 44-81 5-42 (49)
15 PHA03062 putative IMV membrane 77.0 16 0.00035 24.5 6.3 60 27-86 3-72 (78)
16 PHA03048 IMV membrane protein; 74.1 6.5 0.00014 27.2 3.9 42 38-79 14-55 (93)
17 PHA02680 ORF090 IMV phosphoryl 72.9 7.9 0.00017 26.7 4.1 20 38-57 14-33 (91)
18 COG3374 Predicted membrane pro 72.2 9.1 0.0002 29.7 4.8 48 34-81 8-61 (197)
19 PHA03048 IMV membrane protein; 71.7 8.6 0.00019 26.6 4.1 38 16-56 30-67 (93)
20 PF06168 DUF981: Protein of un 69.9 9.3 0.0002 29.3 4.4 49 34-82 7-60 (191)
21 PF05817 Ribophorin_II: Oligos 69.0 20 0.00042 32.0 6.7 38 19-56 536-573 (636)
22 PF09788 Tmemb_55A: Transmembr 66.5 8.4 0.00018 31.0 3.6 48 35-82 198-251 (256)
23 PF12158 DUF3592: Protein of u 65.0 19 0.0004 24.4 4.8 27 27-53 117-146 (148)
24 PRK11463 fxsA phage T7 F exclu 64.3 36 0.00078 24.8 6.4 59 29-87 29-97 (148)
25 KOG4753 Predicted membrane pro 64.0 5.4 0.00012 28.9 1.9 35 24-58 48-82 (124)
26 PHA03055 Hypothetical protein; 62.5 45 0.00097 22.5 6.0 53 34-86 9-71 (79)
27 PHA02898 virion envelope prote 62.2 15 0.00033 25.3 3.8 19 38-56 14-32 (92)
28 PF13349 DUF4097: Domain of un 62.1 6.1 0.00013 27.3 1.9 23 30-52 2-24 (166)
29 PF11297 DUF3098: Protein of u 61.4 18 0.0004 23.6 3.9 25 36-60 8-32 (69)
30 PF05767 Pox_A14: Poxvirus vir 60.0 22 0.00048 24.6 4.3 21 38-58 14-34 (92)
31 PF06609 TRI12: Fungal trichot 59.9 14 0.00031 32.5 4.2 49 33-81 241-291 (599)
32 TIGR00304 conserved hypothetic 59.7 26 0.00056 23.4 4.5 26 30-55 5-30 (77)
33 PF08006 DUF1700: Protein of u 59.2 15 0.00033 26.7 3.7 25 64-88 143-167 (181)
34 PF09656 PGPGW: Putative trans 59.1 23 0.00049 22.0 3.9 34 37-75 3-36 (53)
35 PF01773 Nucleos_tra2_N: Na+ d 59.1 5.6 0.00012 25.9 1.2 22 24-45 17-39 (75)
36 PRK05760 F0F1 ATP synthase sub 59.1 42 0.00091 23.6 5.8 25 63-87 33-57 (124)
37 PF15471 TMEM171: Transmembran 58.7 5.2 0.00011 32.9 1.2 21 34-54 20-40 (319)
38 PHA02680 ORF090 IMV phosphoryl 57.6 22 0.00048 24.5 3.9 37 16-55 30-68 (91)
39 COG3030 FxsA Protein affecting 55.7 54 0.0012 24.5 6.1 26 62-87 73-98 (158)
40 PRK10588 hypothetical protein; 55.1 17 0.00038 25.2 3.2 34 17-50 5-38 (97)
41 PF02293 AmiS_UreI: AmiS/UreI 54.8 23 0.0005 26.7 4.1 43 35-79 3-45 (166)
42 PF07332 DUF1469: Protein of u 54.0 64 0.0014 21.6 6.8 58 32-90 41-98 (121)
43 PF05957 DUF883: Bacterial pro 53.5 15 0.00033 24.1 2.6 12 26-37 71-82 (94)
44 PRK00159 putative septation in 53.1 31 0.00067 23.5 4.1 42 32-74 34-82 (87)
45 PRK10209 acid-resistance membr 52.9 34 0.00073 25.4 4.7 51 37-91 23-73 (190)
46 TIGR02112 cyd_oper_ybgE cyd op 52.8 27 0.00058 24.0 3.8 31 20-50 4-34 (93)
47 PHA02898 virion envelope prote 52.2 18 0.00039 25.0 2.8 38 16-56 30-68 (92)
48 PF00854 PTR2: POT family; In 49.9 29 0.00063 27.2 4.1 43 29-75 1-43 (372)
49 KOG2447 Oligosaccharyltransfer 49.6 49 0.0011 27.1 5.4 37 19-55 186-222 (287)
50 TIGR00751 menA 1,4-dihydroxy-2 49.4 61 0.0013 25.6 5.9 18 65-82 109-126 (284)
51 PF13127 DUF3955: Protein of u 49.1 54 0.0012 20.7 4.6 52 30-82 2-55 (63)
52 PF05745 CRPA: Chlamydia 15 kD 48.2 37 0.00081 25.2 4.1 39 31-69 61-99 (150)
53 KOG4539 Uncharacterized conser 47.6 3.3 7.2E-05 33.2 -1.5 31 64-94 161-191 (274)
54 PF03729 DUF308: Short repeat 47.2 59 0.0013 19.1 5.7 47 34-80 21-69 (72)
55 TIGR02611 conserved hypothetic 46.7 62 0.0013 23.3 5.0 44 25-73 15-58 (121)
56 PRK10132 hypothetical protein; 45.8 24 0.00053 24.6 2.8 13 25-37 83-95 (108)
57 PRK10404 hypothetical protein; 45.5 25 0.00055 24.1 2.8 12 26-37 78-89 (101)
58 COG5120 GOT1 Membrane protein 45.5 28 0.00061 25.2 3.1 38 38-75 33-77 (129)
59 PF03381 CDC50: LEM3 (ligand-e 42.6 30 0.00065 27.4 3.2 32 27-58 238-269 (278)
60 KOG3882 Tetraspanin family int 42.0 30 0.00064 25.8 3.0 48 32-79 14-68 (237)
61 PF08391 Ly49: Ly49-like prote 41.6 8.7 0.00019 27.4 0.0 15 27-41 2-16 (119)
62 PRK10209 acid-resistance membr 41.5 80 0.0017 23.3 5.2 45 39-86 83-127 (190)
63 COG1495 DsbB Disulfide bond fo 41.3 1.2E+02 0.0026 22.3 6.1 49 39-88 19-77 (170)
64 PF11271 DUF3068: Protein of u 41.3 30 0.00065 27.4 3.0 22 33-54 2-23 (301)
65 KOG1172 Na+-independent Cl/HCO 40.6 97 0.0021 29.0 6.4 60 19-78 615-683 (876)
66 KOG2927 Membrane component of 40.0 74 0.0016 27.0 5.2 12 84-95 245-256 (372)
67 PF06341 DUF1056: Protein of u 39.7 1E+02 0.0022 19.9 4.7 24 29-54 11-34 (63)
68 PF04186 FxsA: FxsA cytoplasmi 39.4 59 0.0013 22.7 4.0 23 63-85 69-91 (119)
69 PF04103 CD20: CD20-like famil 39.1 10 0.00022 25.8 0.0 25 33-57 1-25 (150)
70 PF12666 PrgI: PrgI family pro 37.9 1.1E+02 0.0023 19.7 4.9 26 68-99 49-74 (93)
71 PF13807 GNVR: G-rich domain o 37.7 93 0.002 19.7 4.4 24 18-41 45-69 (82)
72 PRK02935 hypothetical protein; 37.4 78 0.0017 22.5 4.3 39 34-77 15-53 (110)
73 PF13038 DUF3899: Domain of un 35.9 53 0.0011 21.3 3.1 16 33-48 7-22 (92)
74 PF11127 DUF2892: Protein of u 35.9 65 0.0014 19.6 3.4 45 39-89 14-58 (66)
75 PF04156 IncA: IncA protein; 35.8 67 0.0015 23.2 3.9 18 32-49 12-29 (191)
76 COG2034 Predicted membrane pro 35.7 88 0.0019 21.3 4.2 27 30-56 6-32 (85)
77 PRK13499 rhamnose-proton sympo 35.3 42 0.00092 27.7 3.1 30 20-49 313-342 (345)
78 PF02544 Steroid_dh: 3-oxo-5-a 35.2 1.6E+02 0.0035 20.8 7.3 70 25-96 1-75 (150)
79 KOG3088 Secretory carrier memb 34.6 1.5E+02 0.0033 24.6 6.1 70 26-97 122-199 (313)
80 COG3247 HdeD Uncharacterized c 34.3 75 0.0016 24.2 4.1 19 24-42 14-33 (185)
81 PF12158 DUF3592: Protein of u 34.2 58 0.0013 21.9 3.2 27 29-55 2-28 (148)
82 PRK12585 putative monovalent c 33.9 1.2E+02 0.0025 23.7 5.1 21 33-53 7-27 (197)
83 PF13630 SdpI: SdpI/YhfL prote 33.8 1.1E+02 0.0025 18.6 4.4 31 24-54 18-50 (76)
84 PRK02868 hypothetical protein; 33.3 2.5E+02 0.0054 22.3 7.0 59 27-85 74-155 (245)
85 PF09900 DUF2127: Predicted me 33.3 1E+02 0.0023 22.0 4.5 46 27-77 63-108 (141)
86 TIGR00766 ribonuclease, putati 33.2 2.1E+02 0.0046 21.7 6.5 34 24-57 191-224 (263)
87 TIGR02830 spore_III_AG stage I 32.9 33 0.00071 26.1 1.9 21 32-52 3-23 (186)
88 PF13129 DUF3953: Protein of u 32.9 87 0.0019 18.2 3.4 36 38-76 2-37 (42)
89 COG5454 Predicted secreted pro 32.9 20 0.00043 24.6 0.6 18 85-102 66-83 (89)
90 PF15099 PIRT: Phosphoinositid 32.8 29 0.00063 25.3 1.6 26 33-58 82-107 (129)
91 PF06570 DUF1129: Protein of u 32.5 2.1E+02 0.0045 21.2 6.4 26 31-56 80-105 (206)
92 TIGR00680 kdpA K+-transporting 31.9 1.9E+02 0.0041 25.9 6.6 54 24-82 249-302 (563)
93 PF08449 UAA: UAA transporter 31.9 80 0.0017 24.4 4.0 29 22-50 57-85 (303)
94 PF03209 PUCC: PUCC protein; 31.7 1.4E+02 0.003 25.4 5.7 31 24-56 47-77 (403)
95 PRK02251 putative septation in 31.4 1.2E+02 0.0025 20.7 4.2 21 31-51 34-54 (87)
96 PHA02702 ORF033 IMV membrane p 31.1 1.7E+02 0.0036 19.7 6.7 55 33-87 7-69 (78)
97 PF04133 Vps55: Vacuolar prote 30.1 1.1E+02 0.0024 21.6 4.2 33 37-77 6-38 (120)
98 PF02038 ATP1G1_PLM_MAT8: ATP1 28.4 72 0.0016 19.7 2.6 16 32-47 19-34 (50)
99 PF11023 DUF2614: Protein of u 27.7 83 0.0018 22.5 3.1 38 34-76 14-51 (114)
100 PF07331 TctB: Tripartite tric 27.1 1.6E+02 0.0034 19.9 4.4 19 32-50 39-57 (141)
101 PF05313 Pox_P21: Poxvirus P21 27.0 1.5E+02 0.0033 22.9 4.7 73 9-91 18-107 (189)
102 PF11368 DUF3169: Protein of u 26.7 1.9E+02 0.0041 22.1 5.2 37 65-101 132-168 (248)
103 PF14802 TMEM192: TMEM192 fami 26.7 1.8E+02 0.0038 22.8 5.1 31 24-54 16-46 (236)
104 PF14927 Neurensin: Neurensin 26.6 1.1E+02 0.0024 22.4 3.7 51 3-55 12-64 (140)
105 COG1113 AnsP Gamma-aminobutyra 26.5 76 0.0016 27.6 3.2 27 19-45 324-352 (462)
106 PF06738 DUF1212: Protein of u 26.5 2.2E+02 0.0049 20.4 5.4 16 24-39 98-113 (193)
107 COG1030 NfeD Membrane-bound se 26.5 88 0.0019 27.0 3.6 27 24-50 218-252 (436)
108 PRK10836 lysine transporter; P 25.6 2E+02 0.0043 23.8 5.5 26 64-93 449-474 (489)
109 PF11874 DUF3394: Domain of un 25.6 77 0.0017 24.2 2.8 19 64-82 33-51 (183)
110 PHA02844 putative transmembran 25.3 1E+02 0.0023 20.5 3.1 18 27-44 46-63 (75)
111 PF14007 YtpI: YtpI-like prote 25.0 2.2E+02 0.0049 19.2 6.8 62 26-93 23-85 (89)
112 PF14143 YrhC: YrhC-like prote 25.0 2.1E+02 0.0045 18.8 5.4 18 65-82 40-57 (72)
113 PF12821 DUF3815: Protein of u 24.9 1.6E+02 0.0036 20.2 4.2 30 63-92 73-102 (130)
114 PF04178 Got1: Got1/Sft2-like 24.7 1.5E+02 0.0033 20.4 4.0 22 37-58 28-49 (118)
115 COG4575 ElaB Uncharacterized c 24.6 80 0.0017 22.2 2.6 11 26-36 81-91 (104)
116 PF03631 Virul_fac_BrkB: Virul 24.5 2.4E+02 0.0051 21.1 5.3 35 23-57 185-219 (260)
117 PF10173 Mit_KHE1: Mitochondri 24.4 29 0.00064 26.1 0.4 31 65-95 149-179 (187)
118 COG4682 Predicted membrane pro 24.4 1.8E+02 0.0038 21.3 4.3 44 27-72 7-52 (128)
119 PLN02922 prenyltransferase 23.8 2.4E+02 0.0051 22.7 5.5 18 65-82 123-140 (315)
120 PF06781 UPF0233: Uncharacteri 23.7 1.7E+02 0.0037 19.8 4.0 22 31-52 33-54 (87)
121 PF09600 Cyd_oper_YbgE: Cyd op 23.6 2.2E+02 0.0049 18.9 4.5 23 28-50 1-23 (82)
122 PF04144 SCAMP: SCAMP family; 23.5 3.1E+02 0.0066 20.2 7.2 36 62-97 65-102 (177)
123 PF15048 OSTbeta: Organic solu 23.5 1.8E+02 0.0038 21.1 4.2 32 23-56 29-62 (125)
124 PF07556 DUF1538: Protein of u 23.2 1.1E+02 0.0024 23.8 3.3 35 24-58 15-49 (212)
125 COG4666 TRAP-type uncharacteri 23.1 2.3E+02 0.005 25.8 5.6 54 29-83 565-618 (642)
126 PF03814 KdpA: Potassium-trans 22.9 2.2E+02 0.0048 25.4 5.4 52 24-80 241-292 (552)
127 PF11321 DUF3123: Protein of u 22.5 37 0.00081 24.2 0.6 26 6-31 24-51 (113)
128 COG2149 Predicted membrane pro 22.4 3.1E+02 0.0066 19.8 5.5 38 19-56 44-81 (120)
129 PF06422 PDR_CDR: CDR ABC tran 22.3 79 0.0017 21.3 2.1 40 12-51 32-73 (103)
130 PF06432 GPI2: Phosphatidylino 22.3 3.1E+02 0.0067 21.6 5.8 66 10-76 9-81 (282)
131 KOG2952 Cell cycle control pro 21.9 78 0.0017 26.7 2.4 29 30-58 307-335 (351)
132 PRK11049 D-alanine/D-serine/gl 21.3 1.1E+02 0.0024 25.1 3.2 29 8-37 322-352 (469)
133 PF11947 DUF3464: Protein of u 21.0 1.2E+02 0.0026 22.5 3.0 35 24-60 92-126 (153)
134 PF05255 UPF0220: Uncharacteri 21.0 2.1E+02 0.0046 21.2 4.4 34 20-53 7-47 (166)
135 PF13150 DUF3989: Protein of u 20.9 1.7E+02 0.0037 19.5 3.5 26 31-56 30-55 (85)
136 PRK12671 putative monovalent c 20.6 1.5E+02 0.0033 21.1 3.4 52 25-76 5-65 (120)
137 PLN02833 glycerol acyltransfer 20.3 1.5E+02 0.0033 24.6 3.8 33 8-42 57-89 (376)
138 PF07062 Clc-like: Clc-like; 20.3 1.2E+02 0.0026 23.5 3.0 22 30-51 2-23 (211)
139 TIGR00765 yihY_not_rbn YihY fa 20.2 1.9E+02 0.0042 22.0 4.1 34 23-56 185-218 (259)
No 1
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.1e-39 Score=227.16 Aligned_cols=103 Identities=69% Similarity=1.106 Sum_probs=100.0
Q ss_pred CceecccccccCCCccccccccc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccchhHHHHHHHHHhccc
Q 034140 1 MAYVDHAFSISDEDIMMETSYTV-NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVG-GDRAHGVFFAVLGAILFIPG 78 (103)
Q Consensus 1 ~~y~~~~~s~s~dd~~~~~q~~~-~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~-~d~~~~~~~lilG~l~fIPG 78 (103)
|+|.||++|.+|.|..+|.|++. |+++|||+|++|++|+++|+.++.+|.+++.++++ +|++|+++|+++|+||||||
T Consensus 19 ~~y~~~~~s~~Dsd~~~~~~~~~s~tr~P~k~i~lavvL~~fg~Lli~lg~fl~~~~~~ag~~~~gv~f~V~G~L~FiPG 98 (124)
T KOG4753|consen 19 MAYSDHAFSISDSDIQIDYSYKVSNTRHPVKEIALAVVLLVFGLLLIGLGFFLAGGRVEAGDRSQGVFFFVLGILLFIPG 98 (124)
T ss_pred hhhcccccccccccceeecccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHheecceeeCCCcceEEEehhhhHhcccc
Confidence 78999999999999999999998 77999999999999999999999999999999998 89999999999999999999
Q ss_pred hHHHHHHHHHHcCCCCcccccCCCC
Q 034140 79 FYYTRIAYYAYKGYKGFSFNNIPSV 103 (103)
Q Consensus 79 ~Yh~~iay~a~~G~~Gysf~~IP~~ 103 (103)
+||+|+|||||||+|||||++||+.
T Consensus 99 fYh~riayyA~KGyrGf~F~~iP~f 123 (124)
T KOG4753|consen 99 FYHTRIAYYAYKGYRGFSFSNIPSF 123 (124)
T ss_pred hheEeeEEEeeccccccccccCCCC
Confidence 9999999999999999999999974
No 2
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=100.00 E-value=4.2e-34 Score=201.56 Aligned_cols=77 Identities=53% Similarity=1.005 Sum_probs=74.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHHHHHHHHHcCCCCcccccCCC
Q 034140 26 RPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPS 102 (103)
Q Consensus 26 kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~~iay~a~~G~~Gysf~~IP~ 102 (103)
|+|||+|++|++||++|++|+++|+++++++++++++|+++++|+|+||||||+||+|++||||||+|||||+|||+
T Consensus 38 k~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~Gysf~~IP~ 114 (115)
T PF05915_consen 38 KIPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKGYSFDDIPD 114 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCCCCHhhCCC
Confidence 44599999999999999999999999999999989999999999999999999999999999999999999999997
No 3
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=93.02 E-value=0.32 Score=31.84 Aligned_cols=60 Identities=22% Similarity=0.366 Sum_probs=39.8
Q ss_pred cCCCccccccccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchH
Q 034140 11 SDEDIMMETSYTV--NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFY 80 (103)
Q Consensus 11 s~dd~~~~~q~~~--~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Y 80 (103)
.+||.-...+... +++...|..+++..++++|.++++.|..... .++.++|+++-.-|.+
T Consensus 19 ~~~DP~fa~~l~~~~~~~~~~r~~~~~~~~~v~gl~llv~G~~~~~----------~~~~v~G~~v~~~~~~ 80 (82)
T PF11239_consen 19 RADDPRFAARLRSGRPRRPSRRRRVLGVLLVVVGLALLVAGVVLSQ----------PPLGVAGFVVMVAGAV 80 (82)
T ss_pred HhcCcHHHHHhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHH
Confidence 3455544556554 4455556678899999999999999996532 2366777666555543
No 4
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=89.92 E-value=1 Score=36.74 Aligned_cols=71 Identities=14% Similarity=0.059 Sum_probs=47.2
Q ss_pred eecccccccCCCccccccccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchH
Q 034140 3 YVDHAFSISDEDIMMETSYTV--NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFY 80 (103)
Q Consensus 3 y~~~~~s~s~dd~~~~~q~~~--~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Y 80 (103)
|-|+.=+..+++.....|-.. +++.+.|.+....+.++.|..++.+.+... +.+.++.+|.+|+.-|.-
T Consensus 66 Y~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~---------s~~~~l~lG~l~~~~g~~ 136 (303)
T COG1575 66 YFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAAL---------SDWLVLLLGLLCIAAGIL 136 (303)
T ss_pred hhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHheee
Confidence 445544444433434445443 888999998888888888888777665432 225589999999887765
Q ss_pred HH
Q 034140 81 YT 82 (103)
Q Consensus 81 h~ 82 (103)
||
T Consensus 137 YT 138 (303)
T COG1575 137 YT 138 (303)
T ss_pred ec
Confidence 54
No 5
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.14 E-value=0.88 Score=33.12 Aligned_cols=53 Identities=21% Similarity=0.385 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CccchhHHHHHHHHHhccchHHH
Q 034140 30 KEIVLAVSLLVFGTFGIICGTIMAYNRVGG-----DRAHGVFFAVLGAILFIPGFYYT 82 (103)
Q Consensus 30 K~I~lA~~L~~~G~~ll~~g~l~~~~~~~~-----d~~~~~~~lilG~l~fIPG~Yh~ 82 (103)
+..+++++++++|+++++.|...+.-...+ ...=+..++.+|+++|.=|.+..
T Consensus 3 ~~~i~~i~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 3 KQRIISIILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCL 60 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666655555543322110 01112456667888887777654
No 6
>PF04713 Pox_I5: Poxvirus protein I5; InterPro: IPR006803 This entry represents the Poxvirus protein I5.
Probab=88.75 E-value=3.1 Score=27.88 Aligned_cols=60 Identities=25% Similarity=0.480 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-----cch---h--HHHHHHHHHhccchHHHHHHH
Q 034140 27 PPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDR-----AHG---V--FFAVLGAILFIPGFYYTRIAY 86 (103)
Q Consensus 27 iPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~-----~~~---~--~~lilG~l~fIPG~Yh~~iay 86 (103)
.++|++.-++.+.+.=.++++.|..+.+-...+.+ |.. + .+=.++.+.||||.=-++-+|
T Consensus 2 ~~~kev~s~IgiTlL~llMvisG~ali~k~~ap~~~v~~rS~~~~rVl~~le~vailifIPGTIiLY~aY 71 (77)
T PF04713_consen 2 LSAKEVFSAIGITLLMLLMVISGGALIFKRIAPHRSVMMRSATFNRVLTFLEYVAILIFIPGTIILYSAY 71 (77)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhChHHHhhccCCcceehhhhhhhHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 46899999999999999999999988876655421 211 1 445789999999975554444
No 7
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=88.29 E-value=0.37 Score=30.63 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--------cCCCccchhHHHHHHHHHhccchH
Q 034140 34 LAVSLLVFGTFGIICGTIMAYNR--------VGGDRAHGVFFAVLGAILFIPGFY 80 (103)
Q Consensus 34 lA~~L~~~G~~ll~~g~l~~~~~--------~~~d~~~~~~~lilG~l~fIPG~Y 80 (103)
+++.|++.|.+|+..|.-..-.. .+....+.+.+++.|..+++-|.+
T Consensus 3 igi~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl~ 57 (59)
T PF11381_consen 3 IGIALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGLF 57 (59)
T ss_pred eeehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHHh
Confidence 46789999999999998543221 122345568999999999988764
No 8
>PRK10591 hypothetical protein; Provisional
Probab=86.59 E-value=2.7 Score=29.05 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC-----CCccchhHHHHHHHHHhccchHHHHHHHHHHcC
Q 034140 36 VSLLVFGTFGIICGTIMAYNRVG-----GDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKG 91 (103)
Q Consensus 36 ~~L~~~G~~ll~~g~l~~~~~~~-----~d~~~~~~~lilG~l~fIPG~Yh~~iay~a~~G 91 (103)
+.|=++|.+|++...+-...+.. +...-.+.++++|+.|.+|-.- .+.|.+.+|
T Consensus 12 lilE~lGi~LLv~a~Lsindyl~lP~~l~~~~aai~mif~Gi~lmiPAav--~ivWR~a~~ 70 (92)
T PRK10591 12 LILEVLGMLLLVVAYLSLNDYLSLPEPLSTPTAAILMIFLGVLLMLPAAV--VIIWRVAKG 70 (92)
T ss_pred HHHHHHHHHHHHHHHHHHcccccCCccccCchHHHHHHHHHHHHhhHHHH--HHHHHHHHH
Confidence 34667899999999887665433 2223346899999999999764 455555544
No 9
>PF14927 Neurensin: Neurensin
Probab=85.65 E-value=1.4 Score=32.40 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=19.8
Q ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHH
Q 034140 27 PPIK-EIVLAVSLLVFGTFGIICGTIM 52 (103)
Q Consensus 27 iPwK-~I~lA~~L~~~G~~ll~~g~l~ 52 (103)
.=|| ...+++.+++.|++++++|.++
T Consensus 42 ~~wkV~~i~g~l~Ll~Gi~~l~vgY~v 68 (140)
T PF14927_consen 42 VCWKVGFISGLLLLLLGIVALTVGYLV 68 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3344 4778888889999999998864
No 10
>PF14145 YrhK: YrhK-like protein
Probab=83.63 E-value=3.1 Score=26.06 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccc
Q 034140 34 LAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPG 78 (103)
Q Consensus 34 lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG 78 (103)
+..+.-++|.++.++|+.++.-+ ....-+..++++|++.|.=+
T Consensus 7 ~~~~~d~~~~~~FliGSilfl~~--~~~~~g~wlFiiGS~~f~i~ 49 (59)
T PF14145_consen 7 ISTVNDFIGGLLFLIGSILFLPE--SLYTAGTWLFIIGSILFLIR 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHH
Confidence 34466677888888888877653 22344578888999887643
No 11
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=82.85 E-value=5.2 Score=27.80 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccC-----CCccchhHHHHHHHHHhccchHHHHHHHHHHcC
Q 034140 37 SLLVFGTFGIICGTIMAYNRVG-----GDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKG 91 (103)
Q Consensus 37 ~L~~~G~~ll~~g~l~~~~~~~-----~d~~~~~~~lilG~l~fIPG~Yh~~iay~a~~G 91 (103)
.|=++|.+|++++.+-...+.. +...-++.++++|+.|.+|-.- .+.|.+.+|
T Consensus 13 ilE~lG~~LLv~a~Lsin~~l~LP~~l~~~~aai~MIf~Gi~lMlPAav--~ivWR~a~~ 70 (96)
T PF07214_consen 13 ILEVLGMILLVLAYLSINDYLSLPAPLSTPTAAIAMIFVGIGLMLPAAV--NIVWRVAKG 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHcccccCcccccCchHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4567899999999987655433 1223347999999999999763 445555543
No 12
>PHA02974 putative IMV membrane protein; Provisional
Probab=80.76 E-value=7.9 Score=26.20 Aligned_cols=57 Identities=23% Similarity=0.466 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc------c---ch-h-HHHHHHHHHhccchHHHHHHH
Q 034140 30 KEIVLAVSLLVFGTFGIICGTIMAYNRVGGDR------A---HG-V-FFAVLGAILFIPGFYYTRIAY 86 (103)
Q Consensus 30 K~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~------~---~~-~-~~lilG~l~fIPG~Yh~~iay 86 (103)
|+...++.+.+.=.++++.|..+.+-...+.+ + .+ . .+=.++++.|+||.=.++-+|
T Consensus 5 ~e~~~~IgiTlL~llMiisG~aLi~k~~~P~~~~v~~ss~tf~rvv~~lE~vailifiPGti~LYsAY 72 (81)
T PHA02974 5 RETLIFIGITILVVLLIISGFSLILRLIPGVYSSVIRSSFTAGKILRFMEIFSTIMFIPGIIILYAAY 72 (81)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHhhcCchhhhhhhHHHHHHHHHHHHHHHHHhheeccHHHHHHHH
Confidence 44444577777777778888777765544331 1 11 1 455789999999976665555
No 13
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=78.90 E-value=2.4 Score=25.43 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHHHHHHH
Q 034140 41 FGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYY 87 (103)
Q Consensus 41 ~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~~iay~ 87 (103)
.|.+++++|.+++..|.. +......++|...++-|..+...++.
T Consensus 2 ~Gil~iv~Gi~~l~~p~~---~~~~~~~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDA---SLAALAIILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466667777776665432 32345567777777777777765554
No 14
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=76.98 E-value=5.2 Score=24.41 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHH
Q 034140 44 FGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYY 81 (103)
Q Consensus 44 ~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh 81 (103)
.|+.+|.+.+....++|+-++.|.+.+|+...+-|.+-
T Consensus 5 ~Li~iglv~l~~r~~~~~i~~lP~~~~Gi~Lii~g~v~ 42 (49)
T PF11384_consen 5 FLILIGLVALFSRNGSDRIQALPAILIGIGLIISGGVG 42 (49)
T ss_pred HHHHHHHHHHHhcCCccchhccHHHHHhHHHHhhhhhh
Confidence 34444444444444568888899999999887777653
No 15
>PHA03062 putative IMV membrane protein; Provisional
Probab=76.95 E-value=16 Score=24.50 Aligned_cols=60 Identities=25% Similarity=0.465 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----ccch----h-HHHHHHHHHhccchHHHHHHH
Q 034140 27 PPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD-----RAHG----V-FFAVLGAILFIPGFYYTRIAY 86 (103)
Q Consensus 27 iPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d-----~~~~----~-~~lilG~l~fIPG~Yh~~iay 86 (103)
.+-|++..|+.+.+.=.++++.|..+.+-...+. ||.+ . .+=.++.++||||.=.++-+|
T Consensus 3 l~~~~l~s~Ig~TlL~llMivsG~ali~k~~~p~r~~~~RS~~~~rVl~~lE~va~lifIPgti~LY~aY 72 (78)
T PHA03062 3 LSTKEIFSAIGLTLLALLMIVSGGALLFKSLAPHRVVMMRSATFNKVVSFLEYVAILIFVPGTIALYSAY 72 (78)
T ss_pred chHHHHHHHHHHHHHHHHHHHhChHHHHhhcCccceeeehhhhhHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3457788888888888888998888777654432 2221 1 455789999999976555555
No 16
>PHA03048 IMV membrane protein; Provisional
Probab=74.12 E-value=6.5 Score=27.21 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccch
Q 034140 38 LLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGF 79 (103)
Q Consensus 38 L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~ 79 (103)
.++.|++|++.++...+-..+.+.+.-.+.=.+.++||+=|.
T Consensus 14 vli~GIiLL~~aCIfAfidfsK~k~~~~~wRalsii~FIlgi 55 (93)
T PHA03048 14 ALIGGIILLAASCIFAFVDFSKNKATVTVWRALSGIAFVLGI 55 (93)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCcchhHHHHHHHHHHHHH
Confidence 355677777777665544333222212233344444444443
No 17
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=72.91 E-value=7.9 Score=26.68 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 034140 38 LLVFGTFGIICGTIMAYNRV 57 (103)
Q Consensus 38 L~~~G~~ll~~g~l~~~~~~ 57 (103)
.++.|++|++.++...+-..
T Consensus 14 vli~GIiLL~~ACIFAfidF 33 (91)
T PHA02680 14 VLICGVLLLTAACVFAFVDF 33 (91)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 45677777777776655433
No 18
>COG3374 Predicted membrane protein [Function unknown]
Probab=72.16 E-value=9.1 Score=29.71 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCc----c--chhHHHHHHHHHhccchHH
Q 034140 34 LAVSLLVFGTFGIICGTIMAYNRVGGDR----A--HGVFFAVLGAILFIPGFYY 81 (103)
Q Consensus 34 lA~~L~~~G~~ll~~g~l~~~~~~~~d~----~--~~~~~lilG~l~fIPG~Yh 81 (103)
|+..|+..|.++.+.+.....+..+.++ . -..|++.+|+..++-|.|-
T Consensus 8 L~~~L~~L~~~~~l~ay~~~~~~~~~~k~~~~~k~~~~p~~~lG~~~~itGl~g 61 (197)
T COG3374 8 LALMLFILGVTLFLLAYAVLKNFLGSRKNDGFNKSFAAPAAGLGIFILITGLWG 61 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchHHHHHHHHHHHHHHh
Confidence 6788999999999888888777655322 2 2359999999998766653
No 19
>PHA03048 IMV membrane protein; Provisional
Probab=71.75 E-value=8.6 Score=26.60 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=25.5
Q ss_pred ccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034140 16 MMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNR 56 (103)
Q Consensus 16 ~~~~q~~~~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~ 56 (103)
|+|.+-.+++..+||+ |+..-|++|.+++ +|++++.+.
T Consensus 30 fidfsK~k~~~~~wRa--lsii~FIlgivl~-lG~~ifsmy 67 (93)
T PHA03048 30 FVDFSKNKATVTVWRA--LSGIAFVLGIVMT-IGMLIYSMW 67 (93)
T ss_pred hhhhhcCCCcchhHHH--HHHHHHHHHHHHH-HHHHHHHHH
Confidence 4555544566688886 5667788887764 588777653
No 20
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=69.86 E-value=9.3 Score=29.29 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC---CCccchh-HHH-HHHHHHhccchHHH
Q 034140 34 LAVSLLVFGTFGIICGTIMAYNRVG---GDRAHGV-FFA-VLGAILFIPGFYYT 82 (103)
Q Consensus 34 lA~~L~~~G~~ll~~g~l~~~~~~~---~d~~~~~-~~l-ilG~l~fIPG~Yh~ 82 (103)
+.+.|+.+|..++........+..+ .+..+++ +++ ++|...++.|.|-+
T Consensus 7 L~~~L~~l~~~~~~~ay~~~~~~~~~~~~~~~~~~~~~f~~lG~~~litGl~~~ 60 (191)
T PF06168_consen 7 LTLMLFTLGAGLLLIAYYVYKNFRGGRKRSLNRSWAPFFGALGLFALITGLWGT 60 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhHHHHHHHHHHHHHHHHHHhe
Confidence 5677888888888887766655543 1222333 555 99999998777644
No 21
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=69.00 E-value=20 Score=31.95 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=31.7
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034140 19 TSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNR 56 (103)
Q Consensus 19 ~q~~~~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~ 56 (103)
-+|.+|+|.|=+.|.+++.++++-..++.++.+...|.
T Consensus 536 H~Fr~~eK~pp~~vS~~F~~~vlapl~~Ll~~W~~lG~ 573 (636)
T PF05817_consen 536 HIFREPEKRPPKIVSLVFTGLVLAPLLVLLILWLKLGA 573 (636)
T ss_pred eecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 35777899999999999999999888888888776653
No 22
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=66.46 E-value=8.4 Score=30.97 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-----Cccchh-HHHHHHHHHhccchHHH
Q 034140 35 AVSLLVFGTFGIICGTIMAYNRVGG-----DRAHGV-FFAVLGAILFIPGFYYT 82 (103)
Q Consensus 35 A~~L~~~G~~ll~~g~l~~~~~~~~-----d~~~~~-~~lilG~l~fIPG~Yh~ 82 (103)
++..+++|++++++++.+..|.... .-.-.| .++++++++++=+.|+.
T Consensus 198 ~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~yy~ 251 (256)
T PF09788_consen 198 AIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSIYYC 251 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhheeE
Confidence 3445566666666666655554331 122233 67778888877776653
No 23
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=65.02 E-value=19 Score=24.38 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHH---HHHHHHHHHHHH
Q 034140 27 PPIKEIVLAVSLLVF---GTFGIICGTIMA 53 (103)
Q Consensus 27 iPwK~I~lA~~L~~~---G~~ll~~g~l~~ 53 (103)
.||+...++..++++ |++++.+|.+++
T Consensus 117 ~~~~~~~~~~~~~~~~~lG~~~~~~gl~~~ 146 (148)
T PF12158_consen 117 RPWSGLWLMFIFGFGFILGLIFFLVGLFML 146 (148)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455334444443333 888888888765
No 24
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=64.28 E-value=36 Score=24.75 Aligned_cols=59 Identities=20% Similarity=0.345 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHH--------hccC-CCccchhHHHHHHHHHhccchHHHHHHHH
Q 034140 29 IKEIVLAVSLLVFGTFGIIC-GTIMAY--------NRVG-GDRAHGVFFAVLGAILFIPGFYYTRIAYY 87 (103)
Q Consensus 29 wK~I~lA~~L~~~G~~ll~~-g~l~~~--------~~~~-~d~~~~~~~lilG~l~fIPG~Yh~~iay~ 87 (103)
|-++++-+.-.++|..++-- |.-.+. |... .+-.++..+++.|++.++||+-...+.-.
T Consensus 29 ~~tl~lvi~t~~lG~~l~r~~G~~~l~~~~~~~~~G~~p~~~l~~~~~~~~gg~LLi~PGf~tD~~Gll 97 (148)
T PRK11463 29 GWTLLLVILTSVLGVLLARSQGFKTLLRAQRKLARGELPAAELLDGLLLAVAGVLLLLPGFVTDILGLL 97 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcHHHHHHhHHHHHHHHHHHccHHHHHHHHHH
Confidence 45566666666667666532 222221 1111 11234567889999999999988766544
No 25
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=64.00 E-value=5.4 Score=28.90 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=29.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 034140 24 NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVG 58 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~ 58 (103)
+..+-|+++++++.||++|+.++++|..+..+.-+
T Consensus 48 ~k~i~lavvL~~fg~Lli~lg~fl~~~~~~ag~~~ 82 (124)
T KOG4753|consen 48 VKEIALAVVLLVFGLLLIGLGFFLAGGRVEAGDRS 82 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHheecceeeCCCc
Confidence 44689999999999999999999999888766544
No 26
>PHA03055 Hypothetical protein; Provisional
Probab=62.47 E-value=45 Score=22.47 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC-----ccch----h-HHHHHHHHHhccchHHHHHHH
Q 034140 34 LAVSLLVFGTFGIICGTIMAYNRVGGD-----RAHG----V-FFAVLGAILFIPGFYYTRIAY 86 (103)
Q Consensus 34 lA~~L~~~G~~ll~~g~l~~~~~~~~d-----~~~~----~-~~lilG~l~fIPG~Yh~~iay 86 (103)
.++.+.+.=.++++.|..+.+-...+. ||.+ . .+=.++.++||||.=.++-+|
T Consensus 9 ~~Ig~TlL~llMiisG~ali~k~~~p~r~~~~RS~~~~rVl~~lE~va~lifIPgti~LY~aY 71 (79)
T PHA03055 9 TAIGITVLMLLMVISGTAMIVKELNPNDIFTMQSLKFNRAVTIFKYIGLFIYIPGTIILYATY 71 (79)
T ss_pred HHHHHHHHHHHHHHhccHHHhhhcCccceeeehhhhhHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 346666666677777777666544332 2221 1 455789999999976665555
No 27
>PHA02898 virion envelope protein; Provisional
Probab=62.20 E-value=15 Score=25.34 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 034140 38 LLVFGTFGIICGTIMAYNR 56 (103)
Q Consensus 38 L~~~G~~ll~~g~l~~~~~ 56 (103)
.++.|++||+.++...+-.
T Consensus 14 vli~GIiLL~~ACIfAfid 32 (92)
T PHA02898 14 VVAFGIILLIVACICAYIE 32 (92)
T ss_pred HHHHHHHHHHHHHHHheeh
Confidence 3566777777777655433
No 28
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=62.10 E-value=6.1 Score=27.33 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034140 30 KEIVLAVSLLVFGTFGIICGTIM 52 (103)
Q Consensus 30 K~I~lA~~L~~~G~~ll~~g~l~ 52 (103)
|.+..++.|+++|++++.+|+..
T Consensus 2 k~~~i~~~l~viG~il~~~g~~~ 24 (166)
T PF13349_consen 2 KLLIIGLILIVIGIILIGIGFFS 24 (166)
T ss_pred eEehHHHHHHHHHHHHHHHHHhh
Confidence 44667888889999999888654
No 29
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=61.41 E-value=18 Score=23.63 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCC
Q 034140 36 VSLLVFGTFGIICGTIMAYNRVGGD 60 (103)
Q Consensus 36 ~~L~~~G~~ll~~g~l~~~~~~~~d 60 (103)
..|+.+|..++++|.++.++.-+.|
T Consensus 8 yill~iG~~vIilGfilMsg~~s~d 32 (69)
T PF11297_consen 8 YILLAIGIAVIILGFILMSGGGSDD 32 (69)
T ss_pred HHHHHHHHHHHHHHHHheeCCCCCC
Confidence 3578899999999999888754433
No 30
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=59.98 E-value=22 Score=24.56 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 034140 38 LLVFGTFGIICGTIMAYNRVG 58 (103)
Q Consensus 38 L~~~G~~ll~~g~l~~~~~~~ 58 (103)
.++.|.+|++.++...+-..+
T Consensus 14 vli~GiiLL~~aCIfAfidfs 34 (92)
T PF05767_consen 14 VLIGGIILLIAACIFAFIDFS 34 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhhc
Confidence 456777777777766554433
No 31
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=59.95 E-value=14 Score=32.52 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC-CccchhHHHHHHHHHhcc-chHH
Q 034140 33 VLAVSLLVFGTFGIICGTIMAYNRVGG-DRAHGVFFAVLGAILFIP-GFYY 81 (103)
Q Consensus 33 ~lA~~L~~~G~~ll~~g~l~~~~~~~~-d~~~~~~~lilG~l~fIP-G~Yh 81 (103)
.++.+|++.|++|+.+|+-+.-+...+ ++.+-++.+++|+.+++- ++|+
T Consensus 241 ~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE 291 (599)
T PF06609_consen 241 WIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWE 291 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhh
Confidence 478899999999999999753322122 345557889999887653 3343
No 32
>TIGR00304 conserved hypothetical protein TIGR00304. The member of this family from Pyrococcus horikoshii scores only 13.91 bits, largely because it is at least 15 residues shorter than other members of this family of small proteins and is penalized for not matching to the N-terminal section of the model. Cutoff scores are set so this hit is between noise and trusted cutoffs.
Probab=59.68 E-value=26 Score=23.41 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034140 30 KEIVLAVSLLVFGTFGIICGTIMAYN 55 (103)
Q Consensus 30 K~I~lA~~L~~~G~~ll~~g~l~~~~ 55 (103)
+-+.+++.|.++|..++++|.++..+
T Consensus 5 ~li~~Gi~LIfiGfilv~lG~~l~~~ 30 (77)
T TIGR00304 5 ILIPLGIILIVIGFLLTFLGGALTAG 30 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788899999999999999998664
No 33
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=59.24 E-value=15 Score=26.66 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHhccchHHHHHHHHH
Q 034140 64 GVFFAVLGAILFIPGFYYTRIAYYA 88 (103)
Q Consensus 64 ~~~~lilG~l~fIPG~Yh~~iay~a 88 (103)
++.++.+|+++..-+.+-+...+..
T Consensus 143 ~i~~~glGlll~~~~~~l~k~~~~~ 167 (181)
T PF08006_consen 143 GIGLFGLGLLLIVITFYLTKLFIKL 167 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665555554444433
No 34
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=59.14 E-value=23 Score=22.00 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHh
Q 034140 37 SLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILF 75 (103)
Q Consensus 37 ~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~f 75 (103)
.+.++|.++++.|..+..-+ .+++.++++|....
T Consensus 3 ~v~v~G~~lv~~Gii~~~lP-----GpG~l~i~~GL~iL 36 (53)
T PF09656_consen 3 GVGVLGWVLVVAGIIMLPLP-----GPGLLVIFLGLAIL 36 (53)
T ss_pred hhhhHHHHHHHHHHHhhcCC-----CCcHHHHHHHHHHH
Confidence 45678999999999876433 23678888887764
No 35
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=59.09 E-value=5.6 Score=25.91 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=13.2
Q ss_pred CCCCChHHHHHHHHH-HHHHHHH
Q 034140 24 NNRPPIKEIVLAVSL-LVFGTFG 45 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L-~~~G~~l 45 (103)
++++|||+|..++.| +++|..+
T Consensus 17 rk~I~wr~V~~gl~lQ~~la~~v 39 (75)
T PF01773_consen 17 RKAIKWRTVIWGLGLQFVLALFV 39 (75)
T ss_dssp GGG--HHHHHHHHHHHHHHHHHH
T ss_pred CCcCChHHHHHHHHHHHHHHHHH
Confidence 668999998887765 3444433
No 36
>PRK05760 F0F1 ATP synthase subunit I; Validated
Probab=59.07 E-value=42 Score=23.61 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHhccchHHHHHHHH
Q 034140 63 HGVFFAVLGAILFIPGFYYTRIAYY 87 (103)
Q Consensus 63 ~~~~~lilG~l~fIPG~Yh~~iay~ 87 (103)
.++..+.=|.++++|..|..+.+..
T Consensus 33 ~a~Sal~Ggl~~~lP~~~Fa~~~fr 57 (124)
T PRK05760 33 WGYSALIGGLIAVLANAYFAHCAFR 57 (124)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999988874
No 37
>PF15471 TMEM171: Transmembrane protein family 171
Probab=58.74 E-value=5.2 Score=32.87 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034140 34 LAVSLLVFGTFGIICGTIMAY 54 (103)
Q Consensus 34 lA~~L~~~G~~ll~~g~l~~~ 54 (103)
+.++||++|.+|+..|.++..
T Consensus 20 liFFLfvFGavllCvG~lLsI 40 (319)
T PF15471_consen 20 LIFFLFVFGAVLLCVGVLLSI 40 (319)
T ss_pred EEehhHHHhHHHHHHHHHHHH
Confidence 457899999999999987653
No 38
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=57.55 E-value=22 Score=24.52 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=22.7
Q ss_pred cccccccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034140 16 MMETSYTV--NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYN 55 (103)
Q Consensus 16 ~~~~q~~~--~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~ 55 (103)
|+|.+-.+ |...+||+ ++..-|++|.+++ +|.+++.+
T Consensus 30 fidFSK~~s~~~~~~wRa--lSii~FIlG~vl~-lGilifs~ 68 (91)
T PHA02680 30 FVDFSKNTSNVTDYVWRA--LSVTCFIVGAVLL-LGLFVFSM 68 (91)
T ss_pred hhhhhccCCCCcchhHHH--HHHHHHHHHHHHH-HHHHHHHH
Confidence 44544322 45688886 4566778887765 45666654
No 39
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=55.70 E-value=54 Score=24.53 Aligned_cols=26 Identities=27% Similarity=0.646 Sum_probs=20.2
Q ss_pred cchhHHHHHHHHHhccchHHHHHHHH
Q 034140 62 AHGVFFAVLGAILFIPGFYYTRIAYY 87 (103)
Q Consensus 62 ~~~~~~lilG~l~fIPG~Yh~~iay~ 87 (103)
.++.-+++.|++.++||+-...+..+
T Consensus 73 l~g~~~~vagiLLl~PGFvTd~lGll 98 (158)
T COG3030 73 LDGLLLIIAGILLLIPGFVTDILGLL 98 (158)
T ss_pred HHhHHHHHHHHHHHcchHHHHHHHHH
Confidence 34567889999999999988766543
No 40
>PRK10588 hypothetical protein; Provisional
Probab=55.12 E-value=17 Score=25.16 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=27.1
Q ss_pred cccccccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 034140 17 METSYTVNNRPPIKEIVLAVSLLVFGTFGIICGT 50 (103)
Q Consensus 17 ~~~q~~~~~kiPwK~I~lA~~L~~~G~~ll~~g~ 50 (103)
+|.-+..-+|.|+|+..+..++...|+++.=-..
T Consensus 5 i~~ly~l~dK~plRaLSliLAl~la~~v~w~P~~ 38 (97)
T PRK10588 5 IDKLYAVMDKRPLRALSLVMALLLAGCMFWDPSR 38 (97)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHcCHHH
Confidence 4555566789999999999999999988865544
No 41
>PF02293 AmiS_UreI: AmiS/UreI family transporter; InterPro: IPR003211 Helicobacter pylori is a Gram-negative, ureolytic bacteria that can colonise the human stomach. It does not survive in a medium with a pH less than 4.0 unless urea is present, preferring a neutral pH. Gastric juice urea is able to rapidly access intrabacterial urease when the periplasmic pH falls below approximately 6.2 owing to pH-gating of a urea channel, UreI. UreI is a six-transmembrane segment protein that is homologous to the amiS genes of the amidase gene cluster and to UreI of Helicobacter hepaticus and Streptococcus salivarius. UreI in H. pylori and H. hepaticus can transport urea only at acidic pH, whereas that of S. salivarius is open at both neutral and acidic pH []. The amiS gene encodes an 18kDa protein with a high content of hydrophobic residues. It has six transmembrane helices. AmiB and AmiS resemble two components of an ABC transporter system []. This family includes UreI and proton gated urea channel as well as putative amide transporters [].; GO: 0006810 transport, 0016020 membrane
Probab=54.79 E-value=23 Score=26.66 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccch
Q 034140 35 AVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGF 79 (103)
Q Consensus 35 A~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~ 79 (103)
++.|+.+|.+|+.=|..+ .++++ +|+-++.=++.|.+.++=..
T Consensus 3 gv~LLyVGaVL~~NGl~l-Lgki~-~k~~av~NlfvG~l~li~~~ 45 (166)
T PF02293_consen 3 GVGLLYVGAVLFLNGLWL-LGKID-DKSAAVINLFVGGLQLIINL 45 (166)
T ss_pred cchHHHHHHHHHHHHHHH-hCCcC-ccchhhhhHHHHHHHHHHHH
Confidence 445666666666655543 33433 34434444444544444333
No 42
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=53.98 E-value=64 Score=21.59 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHHHHHHHHHc
Q 034140 32 IVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYK 90 (103)
Q Consensus 32 I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~~iay~a~~ 90 (103)
.+++.++.++|..++..+.......... -+..+++++.+.+.++=+..-........+
T Consensus 41 ~~~a~vl~~~~l~~l~~al~~~l~~~~~-~~~~~a~liv~~~~l~la~i~~~~~~~~l~ 98 (121)
T PF07332_consen 41 LVLAAVLALLALLFLLVALVFALWEALG-LPPWLAFLIVAGLYLLLALILLLIGRRRLR 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666543221 122357777777766666555555555555
No 43
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=53.46 E-value=15 Score=24.09 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=9.5
Q ss_pred CCChHHHHHHHH
Q 034140 26 RPPIKEIVLAVS 37 (103)
Q Consensus 26 kiPwK~I~lA~~ 37 (103)
.-||+++.+|+.
T Consensus 71 e~P~~svgiAag 82 (94)
T PF05957_consen 71 ENPWQSVGIAAG 82 (94)
T ss_pred HChHHHHHHHHH
Confidence 469999888765
No 44
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=53.08 E-value=31 Score=23.54 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC--CC-----ccchhHHHHHHHHH
Q 034140 32 IVLAVSLLVFGTFGIICGTIMAYNRVG--GD-----RAHGVFFAVLGAIL 74 (103)
Q Consensus 32 I~lA~~L~~~G~~ll~~g~l~~~~~~~--~d-----~~~~~~~lilG~l~ 74 (103)
..+.+.|+++|++=+++-.+. .+.+. .+ -.-+..++++|+++
T Consensus 34 ~~~m~glm~~GllWlvvyYl~-~~~~P~m~~lG~WN~~IGFg~~i~G~lm 82 (87)
T PRK00159 34 VVLMLGLMLIGLAWLVVNYLA-GPAIPWMADLGPWNYAIGFALMITGLLM 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCCCCCcccCchhHHHHHHHHHHHHHH
Confidence 667788999999998888763 22222 11 11234667777765
No 45
>PRK10209 acid-resistance membrane protein; Provisional
Probab=52.85 E-value=34 Score=25.38 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHHHHHHHHHcC
Q 034140 37 SLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKG 91 (103)
Q Consensus 37 ~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~~iay~a~~G 91 (103)
.+++.|..+++.|.+.+..|.. +......++|...++-|..+.. .+...|+
T Consensus 23 ~~li~Gil~ivlGi~~l~~P~~---~~~~~~~~~g~~ll~~Gi~~l~-~~~~~~~ 73 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFPFV---SGDALSTVVGILLICSGIALIV-GLFANRS 73 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHccc
Confidence 3566677777777777766532 2122446688888888888876 3333343
No 46
>TIGR02112 cyd_oper_ybgE cyd operon protein YbgE. This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.
Probab=52.79 E-value=27 Score=24.02 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=24.1
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 034140 20 SYTVNNRPPIKEIVLAVSLLVFGTFGIICGT 50 (103)
Q Consensus 20 q~~~~~kiPwK~I~lA~~L~~~G~~ll~~g~ 50 (103)
-+..-+|.|+|+..+..+|...|+++.=-..
T Consensus 4 ly~~~dK~~lraLSlilAl~la~~v~w~P~~ 34 (93)
T TIGR02112 4 LYELMDKGLLRALSFILAFLLAGCVFWDPNR 34 (93)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHcCHHH
Confidence 3445679999999999999999888755444
No 47
>PHA02898 virion envelope protein; Provisional
Probab=52.23 E-value=18 Score=24.99 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=24.0
Q ss_pred cccccccc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034140 16 MMETSYTV-NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNR 56 (103)
Q Consensus 16 ~~~~q~~~-~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~ 56 (103)
|+|.+-.+ |+..+||+ ++..-|++|.+++ +|++++.+.
T Consensus 30 fidfSK~~~~~~~~wRa--lSii~FIlgivl~-lG~~ifs~y 68 (92)
T PHA02898 30 YIELSKSEKPADSALRS--ISIISFILAIILI-LGIIFFKGY 68 (92)
T ss_pred eehhhcCCCcchhHHHH--HHHHHHHHHHHHH-HHHHHHHHH
Confidence 44544333 44678986 4667778887764 577776653
No 48
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=49.89 E-value=29 Score=27.20 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHh
Q 034140 29 IKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILF 75 (103)
Q Consensus 29 wK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~f 75 (103)
+|+|.++.++.++|.+++++.+.-.. .+.+...+++.+|..+.
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~----~~~~~~~~~~~~gL~li 43 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPS----LPSGIQLGLFYIGLALI 43 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSS----C------CHHHHHHHHH
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcch----hhhhHHHHHHHHHHHHH
Confidence 58999999999999999888774321 12233356666666554
No 49
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=49.60 E-value=49 Score=27.12 Aligned_cols=37 Identities=5% Similarity=0.054 Sum_probs=28.8
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034140 19 TSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYN 55 (103)
Q Consensus 19 ~q~~~~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~ 55 (103)
-+|..|+|.|=|-+...+...++=..+..++.+.-.|
T Consensus 186 HiFr~PeKRp~~~lS~iFt~iiv~pll~Llv~W~klg 222 (287)
T KOG2447|consen 186 HIFRAPEKRPAKPLSDIFTGIIVSPLLGLLVLWLKLG 222 (287)
T ss_pred hhccCCCcCccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577799999999998888888877777777765544
No 50
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=49.44 E-value=61 Score=25.63 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=10.8
Q ss_pred hHHHHHHHHHhccchHHH
Q 034140 65 VFFAVLGAILFIPGFYYT 82 (103)
Q Consensus 65 ~~~lilG~l~fIPG~Yh~ 82 (103)
++++++|.+++.-|..|+
T Consensus 109 ~~~l~lg~~~~~~~~~Yt 126 (284)
T TIGR00751 109 FWFIALGALCIAAAITYT 126 (284)
T ss_pred HHHHHHHHHHHHHhHhhc
Confidence 366677777665554443
No 51
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=49.11 E-value=54 Score=20.69 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--cchhHHHHHHHHHhccchHHH
Q 034140 30 KEIVLAVSLLVFGTFGIICGTIMAYNRVGGDR--AHGVFFAVLGAILFIPGFYYT 82 (103)
Q Consensus 30 K~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~--~~~~~~lilG~l~fIPG~Yh~ 82 (103)
|...++.++++.|.+++++....- .+++.|. -....++-+|.+++.-|.=..
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~~~~-syVd~~G~L~EpFfLiPlg~l~~~~g~~~~ 55 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFNIIG-SYVDEDGVLHEPFFLIPLGYLFLLIGIISL 55 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHhccc-ceECCCCeEecccHHHHHHHHHHHHHHHHH
Confidence 567788899999999988877542 2344221 112455677777776665433
No 52
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=48.18 E-value=37 Score=25.21 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHH
Q 034140 31 EIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAV 69 (103)
Q Consensus 31 ~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~li 69 (103)
+=|.-+.|.++|.+|++.|+.+.+--.+.-..+++-|+|
T Consensus 61 SrAfqItl~VlGiiLviagl~l~fil~~~lg~naf~~~I 99 (150)
T PF05745_consen 61 SRAFQITLVVLGIILVIAGLALTFILHSQLGNNAFLFII 99 (150)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhehhhhcCccchhhH
Confidence 456667888888888888877665443333333444443
No 53
>KOG4539 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.57 E-value=3.3 Score=33.22 Aligned_cols=31 Identities=32% Similarity=0.599 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHhccchHHHHHHHHHHcCCCC
Q 034140 64 GVFFAVLGAILFIPGFYYTRIAYYAYKGYKG 94 (103)
Q Consensus 64 ~~~~lilG~l~fIPG~Yh~~iay~a~~G~~G 94 (103)
.+||+++-.|-=|||||-++-||+-||.+.|
T Consensus 161 TipfiliPLiPNiPgFyl~yRaY~n~rA~qG 191 (274)
T KOG4539|consen 161 TIPFILIPLIPNIPGFYLLYRAYSNWRALQG 191 (274)
T ss_pred cchheeeccCCCCCcceehhhhhhhHHHHhh
Confidence 3688888888889999999999999988766
No 54
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=47.16 E-value=59 Score=19.14 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCc--cchhHHHHHHHHHhccchH
Q 034140 34 LAVSLLVFGTFGIICGTIMAYNRVGGDR--AHGVFFAVLGAILFIPGFY 80 (103)
Q Consensus 34 lA~~L~~~G~~ll~~g~l~~~~~~~~d~--~~~~~~lilG~l~fIPG~Y 80 (103)
......++|..++..|..........++ .+....++.|++..+=|.+
T Consensus 21 ~~~~~~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~~Gi~ 69 (72)
T PF03729_consen 21 LAALAIILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIVLGII 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Confidence 3344566777777777766655444221 2446778888887766543
No 55
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=46.74 E-value=62 Score=23.32 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=31.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHH
Q 034140 25 NRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAI 73 (103)
Q Consensus 25 ~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l 73 (103)
.|-|..-...-+..+++|.++++.|.++..-| .+++..+++|..
T Consensus 15 ~k~p~~~~~~ri~v~v~G~~~~~~Gi~ml~lP-----GpG~l~i~iGl~ 58 (121)
T TIGR02611 15 AKRRAYGFVVRPLVLVVGWVVLIVGIITIPLP-----GPGWLTIFIGLA 58 (121)
T ss_pred hhCcccchHHHHHHHHHHHHHHHHHHHHhccC-----CchHHHHHHHHH
Confidence 35566666777889999999999999987432 345666666654
No 56
>PRK10132 hypothetical protein; Provisional
Probab=45.81 E-value=24 Score=24.56 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=9.7
Q ss_pred CCCChHHHHHHHH
Q 034140 25 NRPPIKEIVLAVS 37 (103)
Q Consensus 25 ~kiPwK~I~lA~~ 37 (103)
+.-||+++.+|..
T Consensus 83 ~~~Pw~svgiaag 95 (108)
T PRK10132 83 RERPWCSVGTAAA 95 (108)
T ss_pred HhCcHHHHHHHHH
Confidence 3579999887654
No 57
>PRK10404 hypothetical protein; Provisional
Probab=45.50 E-value=25 Score=24.12 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=9.1
Q ss_pred CCChHHHHHHHH
Q 034140 26 RPPIKEIVLAVS 37 (103)
Q Consensus 26 kiPwK~I~lA~~ 37 (103)
.-||+++.+|..
T Consensus 78 e~Pw~avGiaag 89 (101)
T PRK10404 78 EKPWQGIGVGAA 89 (101)
T ss_pred hCcHHHHHHHHH
Confidence 479999887654
No 58
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=45.49 E-value=28 Score=25.23 Aligned_cols=38 Identities=21% Similarity=0.475 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhccC-------CCccchhHHHHHHHHHh
Q 034140 38 LLVFGTFGIICGTIMAYNRVG-------GDRAHGVFFAVLGAILF 75 (103)
Q Consensus 38 L~~~G~~ll~~g~l~~~~~~~-------~d~~~~~~~lilG~l~f 75 (103)
|+..|-.|+++|..+.++... .|+-|+..++..|.+..
T Consensus 33 Ll~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~ 77 (129)
T COG5120 33 LLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLL 77 (129)
T ss_pred HHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHH
Confidence 445566667778777776431 45556666666666554
No 59
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=42.62 E-value=30 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=26.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 034140 27 PPIKEIVLAVSLLVFGTFGIICGTIMAYNRVG 58 (103)
Q Consensus 27 iPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~ 58 (103)
..=|...|+++.+++|.++++++++++.-+.-
T Consensus 238 ~Ggkn~~Lgi~ylvvg~i~~v~~i~~~~~~~~ 269 (278)
T PF03381_consen 238 FGGKNYFLGIAYLVVGGICLVLAIIFLIIHYF 269 (278)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33478999999999999999999988776543
No 60
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=42.04 E-value=30 Score=25.79 Aligned_cols=48 Identities=15% Similarity=0.336 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCc-------cchhHHHHHHHHHhccch
Q 034140 32 IVLAVSLLVFGTFGIICGTIMAYNRVGGDR-------AHGVFFAVLGAILFIPGF 79 (103)
Q Consensus 32 I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~-------~~~~~~lilG~l~fIPG~ 79 (103)
+.+.++..+.|+.++..|..+......... .-.+.++++|.++|+=|+
T Consensus 14 f~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~f 68 (237)
T KOG3882|consen 14 FLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGF 68 (237)
T ss_pred HHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHH
Confidence 566777888888888888876554332111 124577777777776554
No 61
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=41.65 E-value=8.7 Score=27.44 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHH
Q 034140 27 PPIKEIVLAVSLLVF 41 (103)
Q Consensus 27 iPwK~I~lA~~L~~~ 41 (103)
+||+-||+|+.-+.+
T Consensus 2 vpW~liav~LGILCl 16 (119)
T PF08391_consen 2 VPWRLIAVALGILCL 16 (119)
T ss_dssp ---------------
T ss_pred CchHHHHHHHHHHHH
Confidence 799999888844433
No 62
>PRK10209 acid-resistance membrane protein; Provisional
Probab=41.51 E-value=80 Score=23.34 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHHHHHH
Q 034140 39 LVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAY 86 (103)
Q Consensus 39 ~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~~iay 86 (103)
++.|...++.|.+++.+|.. +.....+++|+..++-|..+...++
T Consensus 83 ll~Gil~ii~Gil~l~~P~~---~~~~l~~l~g~~~iv~Gi~~i~~a~ 127 (190)
T PRK10209 83 ILLGVAYLVLGYFFIRNPEV---GMFSLAAFIAGLFCVGGIIRLMSGY 127 (190)
T ss_pred HHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666655432 2123445667777777777766653
No 63
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=41.31 E-value=1.2e+02 Score=22.31 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCc------cchhHHHHHHHHHhccchHH----HHHHHHH
Q 034140 39 LVFGTFGIICGTIMAYNRVGGDR------AHGVFFAVLGAILFIPGFYY----TRIAYYA 88 (103)
Q Consensus 39 ~~~G~~ll~~g~l~~~~~~~~d~------~~~~~~lilG~l~fIPG~Yh----~~iay~a 88 (103)
..+++.....+.+ .++++.++. .||++++.++.++.+-+.+. +|+.+++
T Consensus 19 ~~~~~~~~~~~al-~fq~i~g~~PC~LC~~QR~~~~~~~~i~~l~~~~~~~~~~r~~~~~ 77 (170)
T COG1495 19 ALLGLALALLAAL-YFQYILGLEPCPLCLYQRIAMYGLGVILLLALLIGPLNRLRLYGLA 77 (170)
T ss_pred HHHHHHHHHHHHH-HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 3333333333333 445555443 57788888888887777776 5555443
No 64
>PF11271 DUF3068: Protein of unknown function (DUF3068); InterPro: IPR021424 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=41.30 E-value=30 Score=27.42 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034140 33 VLAVSLLVFGTFGIICGTIMAY 54 (103)
Q Consensus 33 ~lA~~L~~~G~~ll~~g~l~~~ 54 (103)
.++..|+.+|++||+.|.++-.
T Consensus 2 ~~~~~l~~lG~~llv~a~llp~ 23 (301)
T PF11271_consen 2 ILSAVLLGLGVFLLVAAILLPT 23 (301)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999987643
No 65
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=40.62 E-value=97 Score=29.05 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=39.5
Q ss_pred cccccCC--CCChHHHHHHHHHHHHHHHHHHHHHH----HHHhccC---CCccchhHHHHHHHHHhccc
Q 034140 19 TSYTVNN--RPPIKEIVLAVSLLVFGTFGIICGTI----MAYNRVG---GDRAHGVFFAVLGAILFIPG 78 (103)
Q Consensus 19 ~q~~~~~--kiPwK~I~lA~~L~~~G~~ll~~g~l----~~~~~~~---~d~~~~~~~lilG~l~fIPG 78 (103)
..|..++ +.||+.+.+|+..-+.-++|+.+=.- +...+.. ...+..+=++++|+++.+=|
T Consensus 615 rgw~v~~~~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~ics 683 (876)
T KOG1172|consen 615 RGWFVPPFGKNPWWYVFAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICS 683 (876)
T ss_pred CCeeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHH
Confidence 3455544 89999999999998888888875433 2222211 12233478999999886644
No 66
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.03 E-value=74 Score=26.96 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=8.7
Q ss_pred HHHHHHcCCCCc
Q 034140 84 IAYYAYKGYKGF 95 (103)
Q Consensus 84 iay~a~~G~~Gy 95 (103)
|.|..++|++|+
T Consensus 245 I~~il~~g~~g~ 256 (372)
T KOG2927|consen 245 ITWILTGGKHGF 256 (372)
T ss_pred HHHHHhCCCCce
Confidence 557777888875
No 67
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=39.68 E-value=1e+02 Score=19.90 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034140 29 IKEIVLAVSLLVFGTFGIICGTIMAY 54 (103)
Q Consensus 29 wK~I~lA~~L~~~G~~ll~~g~l~~~ 54 (103)
|| ..-+.+|+.|.+++.++.+.+.
T Consensus 11 W~--~~DIi~Fila~i~i~it~F~~n 34 (63)
T PF06341_consen 11 WK--YFDIILFILAMIFINITAFLIN 34 (63)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 55 4557899999999999998763
No 68
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=39.37 E-value=59 Score=22.69 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHhccchHHHHHH
Q 034140 63 HGVFFAVLGAILFIPGFYYTRIA 85 (103)
Q Consensus 63 ~~~~~lilG~l~fIPG~Yh~~ia 85 (103)
++...++.|++..+||+-...+.
T Consensus 69 ~~~~~~~gg~LLi~PGflTD~lG 91 (119)
T PF04186_consen 69 DGALLAVGGVLLIIPGFLTDILG 91 (119)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 34677888888888888776554
No 69
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=39.13 E-value=10 Score=25.79 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 034140 33 VLAVSLLVFGTFGIICGTIMAYNRV 57 (103)
Q Consensus 33 ~lA~~L~~~G~~ll~~g~l~~~~~~ 57 (103)
+|++.+.+.|+..+.+|......+.
T Consensus 1 ~LG~~qI~lGi~~i~lGi~~~~~~~ 25 (150)
T PF04103_consen 1 VLGVIQILLGILSIVLGIIALSLSS 25 (150)
T ss_dssp -------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777777777766655443
No 70
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=37.94 E-value=1.1e+02 Score=19.75 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=15.6
Q ss_pred HHHHHHHhccchHHHHHHHHHHcCCCCccccc
Q 034140 68 AVLGAILFIPGFYYTRIAYYAYKGYKGFSFNN 99 (103)
Q Consensus 68 lilG~l~fIPG~Yh~~iay~a~~G~~Gysf~~ 99 (103)
.++.++..+| .+.+++..++|.++|+
T Consensus 49 ~~~~i~~~~p------~~~~g~~k~~gl~~e~ 74 (93)
T PF12666_consen 49 SWIMIPIALP------FAFLGFFKKDGLPLEK 74 (93)
T ss_pred HHHHHHHHHH------HHHhHhhhhcCCCHHH
Confidence 3444444455 5666777777777764
No 71
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=37.68 E-value=93 Score=19.73 Aligned_cols=24 Identities=17% Similarity=0.348 Sum_probs=13.6
Q ss_pred cccccc-CCCCChHHHHHHHHHHHH
Q 034140 18 ETSYTV-NNRPPIKEIVLAVSLLVF 41 (103)
Q Consensus 18 ~~q~~~-~~kiPwK~I~lA~~L~~~ 41 (103)
|....+ .|--|.|...+++.+++.
T Consensus 45 d~A~~P~~P~~P~~~lil~l~~~~G 69 (82)
T PF13807_consen 45 DPAIVPDKPVSPKRALILALGLFLG 69 (82)
T ss_pred cccccCCCCCCCcHHHHHHHHHHHH
Confidence 333333 344677777777765443
No 72
>PRK02935 hypothetical protein; Provisional
Probab=37.41 E-value=78 Score=22.53 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhcc
Q 034140 34 LAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIP 77 (103)
Q Consensus 34 lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIP 77 (103)
.|+.|.++|.....+|.+. + ....-...++++|.++.+-
T Consensus 15 ~aL~lvfiG~~vMy~Giff---~--~~~~~m~ifm~~G~l~~l~ 53 (110)
T PRK02935 15 FALSLVFIGFIVMYLGIFF---R--ESIIIMTIFMLLGFLAVIA 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHh---c--ccHHHHHHHHHHHHHHHHH
Confidence 4566778899999999653 1 1111123677889988763
No 73
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=35.93 E-value=53 Score=21.31 Aligned_cols=16 Identities=25% Similarity=0.575 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 034140 33 VLAVSLLVFGTFGIIC 48 (103)
Q Consensus 33 ~lA~~L~~~G~~ll~~ 48 (103)
.++++++++|..+++.
T Consensus 7 l~~l~lliig~~~~v~ 22 (92)
T PF13038_consen 7 LVGLILLIIGGFLFVF 22 (92)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555444
No 74
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=35.92 E-value=65 Score=19.61 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHHHHHHHHH
Q 034140 39 LVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAY 89 (103)
Q Consensus 39 ~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~~iay~a~ 89 (103)
+++|.+++..+.....+ ..++.+.++|++.+.-|.--..-+|...
T Consensus 14 ~~~G~~l~~~~~~~~~~------~~~~~~~~~g~~ll~~g~~g~Cp~~~ll 58 (66)
T PF11127_consen 14 IIIGIVLLALGLLGLFG------SWGWLLGFVGAMLLVTGITGFCPLYALL 58 (66)
T ss_pred HHHHHHHHHHHHHhccc------chHHHHHHHHHHHHHHHHHCcCHhHHHh
Confidence 35677777766654321 1167888888888877766554444444
No 75
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=35.78 E-value=67 Score=23.15 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034140 32 IVLAVSLLVFGTFGIICG 49 (103)
Q Consensus 32 I~lA~~L~~~G~~ll~~g 49 (103)
+++++.|.+.|+++++++
T Consensus 12 iilgilli~~gI~~Lv~~ 29 (191)
T PF04156_consen 12 IILGILLIASGIAALVLF 29 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555666666554443
No 76
>COG2034 Predicted membrane protein [Function unknown]
Probab=35.73 E-value=88 Score=21.30 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034140 30 KEIVLAVSLLVFGTFGIICGTIMAYNR 56 (103)
Q Consensus 30 K~I~lA~~L~~~G~~ll~~g~l~~~~~ 56 (103)
+-+.....|.++|..++++|..+.+..
T Consensus 6 ~li~~g~~li~iGf~LifLGi~l~~~~ 32 (85)
T COG2034 6 DLIIAGLILIFIGFLLIFLGIVLPAFS 32 (85)
T ss_pred HhHHHhhHHHHHHHHHHHHHHHHHhcC
Confidence 347788889999999999999887654
No 77
>PRK13499 rhamnose-proton symporter; Provisional
Probab=35.29 E-value=42 Score=27.73 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=21.9
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHH
Q 034140 20 SYTVNNRPPIKEIVLAVSLLVFGTFGIICG 49 (103)
Q Consensus 20 q~~~~~kiPwK~I~lA~~L~~~G~~ll~~g 49 (103)
+||.-+|.+.|.+++.+.|+++|.+++..|
T Consensus 313 E~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 313 EWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 344345777788888888888888887765
No 78
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=35.16 E-value=1.6e+02 Score=20.80 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=41.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHHHHHHHHHc-----CCCCcc
Q 034140 25 NRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYK-----GYKGFS 96 (103)
Q Consensus 25 ~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~~iay~a~~-----G~~Gys 96 (103)
++.|...++.+.+ +-+-...+....+....+. ......-+..++|+.+|+=|.+.-...-...+ |.++|+
T Consensus 1 ~~mpi~~~~~~~~-f~~~ng~l~~~~~~~~~~~-~~~~~~~~~~~~g~~lf~~g~~~n~~~h~~L~~lr~~~~~~y~ 75 (150)
T PF02544_consen 1 NTMPISNVFMNCF-FWVLNGYLIGYYLSYYAPY-QYTWLPSPRFIIGLALFLIGSIGNFYSHLILANLRKPGSKKYK 75 (150)
T ss_pred CCccHHHHHHHHH-HHHHHHHHHHHHHhcCCcc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcee
Confidence 4678888887777 5444434333333222211 11111226789999999999988777766666 555553
No 79
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.59 E-value=1.5e+02 Score=24.55 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=46.0
Q ss_pred CCCh---HHHHHH--HHHHHHHHHH-HHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHH--HHHHHHHcCCCCccc
Q 034140 26 RPPI---KEIVLA--VSLLVFGTFG-IICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYT--RIAYYAYKGYKGFSF 97 (103)
Q Consensus 26 kiPw---K~I~lA--~~L~~~G~~l-l~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~--~iay~a~~G~~Gysf 97 (103)
.||. |.+-.+ +-|+...+++ =++|++.+. +++++...+.+-|+=+|.|-|++|-. |=+|.|.|--.-++|
T Consensus 122 EIPv~~Qk~vk~~yylwm~~~~tL~~Niia~la~~--i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F 199 (313)
T KOG3088|consen 122 EIPVEFQKLVKRAYYLWMGLVLTLLWNIIACLAWW--IKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNF 199 (313)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhh
Confidence 3555 444333 3334343333 356777666 55556556789999999999999975 668888887666655
No 80
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=34.29 E-value=75 Score=24.19 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=8.9
Q ss_pred CCCCChHH-HHHHHHHHHHH
Q 034140 24 NNRPPIKE-IVLAVSLLVFG 42 (103)
Q Consensus 24 ~~kiPwK~-I~lA~~L~~~G 42 (103)
..|.||+. .++++.++++|
T Consensus 14 ~l~~~w~~~l~~Gv~lii~G 33 (185)
T COG3247 14 MLKKPWWWVLLLGVLLIILG 33 (185)
T ss_pred hhcCCchHHHHHHHHHHHHH
Confidence 44566665 33444443333
No 81
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=34.23 E-value=58 Score=21.89 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034140 29 IKEIVLAVSLLVFGTFGIICGTIMAYN 55 (103)
Q Consensus 29 wK~I~lA~~L~~~G~~ll~~g~l~~~~ 55 (103)
|.-+.++++++++|..++..+......
T Consensus 2 ~~~~~~~~i~l~~g~~~~~~~~~~~~~ 28 (148)
T PF12158_consen 2 VFLLLFGIIFLLIGLVLLIGGIFLYWR 28 (148)
T ss_pred eEhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888889999998888876643
No 82
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=33.86 E-value=1.2e+02 Score=23.69 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034140 33 VLAVSLLVFGTFGIICGTIMA 53 (103)
Q Consensus 33 ~lA~~L~~~G~~ll~~g~l~~ 53 (103)
.++.+|+++|+++.++|++=+
T Consensus 7 iI~~vLLliG~~f~ligaIGL 27 (197)
T PRK12585 7 IIISIMILIGGLLSILAAIGV 27 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888777643
No 83
>PF13630 SdpI: SdpI/YhfL protein family
Probab=33.76 E-value=1.1e+02 Score=18.56 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=21.7
Q ss_pred CCCCChHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 034140 24 NNRPPIKE--IVLAVSLLVFGTFGIICGTIMAY 54 (103)
Q Consensus 24 ~~kiPwK~--I~lA~~L~~~G~~ll~~g~l~~~ 54 (103)
.++-=||. -..+..++..|.++++.+.++..
T Consensus 18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~ 50 (76)
T PF13630_consen 18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIILF 50 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444544 47778888899998888887643
No 84
>PRK02868 hypothetical protein; Provisional
Probab=33.29 E-value=2.5e+02 Score=22.34 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCc---cch-------h-HHHHHHHHH-----------hccchHHHH
Q 034140 27 PPIKEIVLAVSLLVFGTFGIICGTIMAYNRVG-GDR---AHG-------V-FFAVLGAIL-----------FIPGFYYTR 83 (103)
Q Consensus 27 iPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~-~d~---~~~-------~-~~lilG~l~-----------fIPG~Yh~~ 83 (103)
+=.|.=+.+++-.++|-+++..|.+.+..... +++ .|. + .+++++++| ++||.|-..
T Consensus 74 ~ll~~s~~~~~s~lig~~lL~g~il~~I~~~s~g~~v~~~~~~~~s~~~lp~l~lL~fl~tLlI~lG~~L~iiPGI~l~I 153 (245)
T PRK02868 74 ILLKASAASTFSGLIGNTLLLGGILTLIQLVSAGQRVSALRAIGASAPILPKLLILIFLTTLLIQLGFMLVVVPGILLAI 153 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44577888899999999999988887665433 222 111 1 355666555 899999654
Q ss_pred HH
Q 034140 84 IA 85 (103)
Q Consensus 84 ia 85 (103)
-.
T Consensus 154 ~l 155 (245)
T PRK02868 154 AL 155 (245)
T ss_pred HH
Confidence 43
No 85
>PF09900 DUF2127: Predicted membrane protein (DUF2127); InterPro: IPR021125 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=33.26 E-value=1e+02 Score=21.98 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhcc
Q 034140 27 PPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIP 77 (103)
Q Consensus 27 iPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIP 77 (103)
.|-+--.+|+.++.=|.+-++-+..++. ++.++.++.++....|||
T Consensus 63 ~~~~l~~~a~~~~~Ya~l~lvea~GLw~-----~k~Wae~lav~~~~~fiP 108 (141)
T PF09900_consen 63 SPSTLHFAALYLLAYALLRLVEAYGLWR-----GKRWAEWLAVISTGIFIP 108 (141)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHH-----cCchHhHHHHHHHHHHHH
Confidence 3444567788888889998888888874 367888999999999998
No 86
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=33.21 E-value=2.1e+02 Score=21.65 Aligned_cols=34 Identities=3% Similarity=-0.122 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034140 24 NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRV 57 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~ 57 (103)
++|+|||.+..+..+..+|..+.-.+.-...++.
T Consensus 191 ~~k~~~~~~l~Ga~~aa~~~~~~~~~fs~Y~~~~ 224 (263)
T TIGR00766 191 REPVRLVTLARGTLMAAIGFELFKQVMTIYLPIL 224 (263)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5588999999888888888877755544444443
No 87
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=32.92 E-value=33 Score=26.14 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034140 32 IVLAVSLLVFGTFGIICGTIM 52 (103)
Q Consensus 32 I~lA~~L~~~G~~ll~~g~l~ 52 (103)
+-..++|+++|.+|++++.++
T Consensus 3 ~~~l~il~l~GvlLli~s~~f 23 (186)
T TIGR02830 3 LTYLLVLLLIGLLLLIVSSFF 23 (186)
T ss_pred hHHHHHHHHHHHHHHHhhccc
Confidence 445678889999999999864
No 88
>PF13129 DUF3953: Protein of unknown function (DUF3953)
Probab=32.92 E-value=87 Score=18.20 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhc
Q 034140 38 LLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFI 76 (103)
Q Consensus 38 L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fI 76 (103)
+++.|..++++|.--.- ..++..++..++.|+.+++
T Consensus 2 ~~lLG~m~~~~Gi~e~k---k~~k~~g~~~f~~~~f~~~ 37 (42)
T PF13129_consen 2 QILLGLMMFIIGIEEIK---KERKSSGILSFLVGAFILF 37 (42)
T ss_pred hHHHHHHHHHHHHHHHH---hcccceehHHHHHHHHheE
Confidence 45668888888875332 2345556777777766654
No 89
>COG5454 Predicted secreted protein [Function unknown]
Probab=32.85 E-value=20 Score=24.60 Aligned_cols=18 Identities=28% Similarity=0.844 Sum_probs=13.0
Q ss_pred HHHHHcCCCCcccccCCC
Q 034140 85 AYYAYKGYKGFSFNNIPS 102 (103)
Q Consensus 85 ay~a~~G~~Gysf~~IP~ 102 (103)
+||-..-..|||.||||+
T Consensus 66 l~y~lt~~~g~~LddiP~ 83 (89)
T COG5454 66 LFYGLTHFLGYSLDDIPH 83 (89)
T ss_pred HHHHHHHHHcCCcccccc
Confidence 344555578899999986
No 90
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=32.85 E-value=29 Score=25.31 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Q 034140 33 VLAVSLLVFGTFGIICGTIMAYNRVG 58 (103)
Q Consensus 33 ~lA~~L~~~G~~ll~~g~l~~~~~~~ 58 (103)
.++.+||..|..|+++|.++|--.+.
T Consensus 82 ~~G~vlLs~GLmlL~~~alcW~~~~r 107 (129)
T PF15099_consen 82 IFGPVLLSLGLMLLACSALCWKPIIR 107 (129)
T ss_pred hehHHHHHHHHHHHHhhhheehhhhH
Confidence 56788999999999999888865543
No 91
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=32.45 E-value=2.1e+02 Score=21.24 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034140 31 EIVLAVSLLVFGTFGIICGTIMAYNR 56 (103)
Q Consensus 31 ~I~lA~~L~~~G~~ll~~g~l~~~~~ 56 (103)
..++-.+|+++|...++.|...+++.
T Consensus 80 ~~~ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 80 LMALDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677788889999999998876665
No 92
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=31.95 E-value=1.9e+02 Score=25.86 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=40.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHH
Q 034140 24 NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYT 82 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~ 82 (103)
.|+.||.-..=.+.++++...|.. .+|++-+|+.|++.++..=.++|+++.--+
T Consensus 249 ENPt~ltN~~e~~~illIP~al~~-----~fG~mv~~~rqg~~i~~~m~~lf~~~~~~~ 302 (563)
T TIGR00680 249 ENPTNFANFVETVAIMVIPAALCF-----AFGIMAGDRRQGWLILWMMFIIYGILIAIA 302 (563)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHH-----HHHHHhcCcchhHHHHHHHHHHHHHHHHHH
Confidence 677888887777777776666554 566666888999988888888888876543
No 93
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=31.89 E-value=80 Score=24.43 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=22.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 034140 22 TVNNRPPIKEIVLAVSLLVFGTFGIICGT 50 (103)
Q Consensus 22 ~~~~kiPwK~I~lA~~L~~~G~~ll~~g~ 50 (103)
+++++.|+|..+...++..++..+--.++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al 85 (303)
T PF08449_consen 57 PKSRKIPLKKYAILSFLFFLASVLSNAAL 85 (303)
T ss_pred cCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999888888888877655443
No 94
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=31.68 E-value=1.4e+02 Score=25.37 Aligned_cols=31 Identities=16% Similarity=-0.024 Sum_probs=23.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034140 24 NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNR 56 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~ 56 (103)
+++.|| |.+...++..|..+.-...+.+.+.
T Consensus 47 ~rRtPy--I~~G~~~~~~g~~~ap~a~~~l~~~ 77 (403)
T PF03209_consen 47 WRRTPY--IWGGTLLQAGGLAIAPFALLLLAES 77 (403)
T ss_pred CCchhh--hHHHHHHHHHHHHHHHHHHHHHccc
Confidence 578888 6778888888888888888776653
No 95
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=31.35 E-value=1.2e+02 Score=20.71 Aligned_cols=21 Identities=19% Similarity=0.312 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034140 31 EIVLAVSLLVFGTFGIICGTI 51 (103)
Q Consensus 31 ~I~lA~~L~~~G~~ll~~g~l 51 (103)
-..+.+.|+++|++=+++-.+
T Consensus 34 ~~~~m~~lm~~Gl~WlvvyYl 54 (87)
T PRK02251 34 FVPLFVALMIIGLIWLVVYYL 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 366778899999999888876
No 96
>PHA02702 ORF033 IMV membrane protein; Provisional
Probab=31.09 E-value=1.7e+02 Score=19.68 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC---Cccc---h-h-HHHHHHHHHhccchHHHHHHHH
Q 034140 33 VLAVSLLVFGTFGIICGTIMAYNRVGG---DRAH---G-V-FFAVLGAILFIPGFYYTRIAYY 87 (103)
Q Consensus 33 ~lA~~L~~~G~~ll~~g~l~~~~~~~~---d~~~---~-~-~~lilG~l~fIPG~Yh~~iay~ 87 (103)
-.|+.+.+.=.++++.|..+..-...+ -||. + . .+=+++.++||||.=-++-+|.
T Consensus 7 ~~~IGiTvLmLlMvisGgali~r~~~p~l~~rS~~~~Rvltvle~va~l~~IPgtIiLY~aYi 69 (78)
T PHA02702 7 GVAVGATILMLLIVVTGGATIARRGAPSLGIRSRGALRVLTVLDFVSLLTTIPCTIILYFLCM 69 (78)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHhhcCchhheecccchhHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 345556666666777776665543331 1222 1 2 5667899999999766655554
No 97
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=30.10 E-value=1.1e+02 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhcc
Q 034140 37 SLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIP 77 (103)
Q Consensus 37 ~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIP 77 (103)
+++.+|.+|+++|+.+. .+.+|++++=.-++-|
T Consensus 6 ~~~aiG~lL~IL~CAL~--------~nw~PL~v~~~y~laP 38 (120)
T PF04133_consen 6 FFLAIGFLLVILSCALY--------KNWWPLFVVLFYVLAP 38 (120)
T ss_pred HHHHHHHHHHHHHHHHh--------cccHHHHHHHHHHHHh
Confidence 45678999999998762 2236777665544444
No 98
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=28.42 E-value=72 Score=19.70 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 034140 32 IVLAVSLLVFGTFGII 47 (103)
Q Consensus 32 I~lA~~L~~~G~~ll~ 47 (103)
...|.+||++|++.+.
T Consensus 19 Li~A~vlfi~Gi~iil 34 (50)
T PF02038_consen 19 LIFAGVLFILGILIIL 34 (50)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5667777777775554
No 99
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.68 E-value=83 Score=22.52 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhc
Q 034140 34 LAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFI 76 (103)
Q Consensus 34 lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fI 76 (103)
.|+.|.++|.+....|.+.- .+..--..++++|.|+.+
T Consensus 14 ~al~lif~g~~vmy~gi~f~-----~~~~im~ifmllG~L~~l 51 (114)
T PF11023_consen 14 FALSLIFIGMIVMYIGIFFK-----ASPIIMVIFMLLGLLAIL 51 (114)
T ss_pred HHHHHHHHHHHHHhhhhhhc-----ccHHHHHHHHHHHHHHHH
Confidence 45567778888888886542 111112377888888755
No 100
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=27.11 E-value=1.6e+02 Score=19.91 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034140 32 IVLAVSLLVFGTFGIICGT 50 (103)
Q Consensus 32 I~lA~~L~~~G~~ll~~g~ 50 (103)
..++..+.+.|..++.-+.
T Consensus 39 ~~l~~~l~~~~~~l~~~~~ 57 (141)
T PF07331_consen 39 RLLGILLLILSLLLLVRSF 57 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444555554444333
No 101
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=27.05 E-value=1.5e+02 Score=22.89 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=37.4
Q ss_pred cccCCCccccccccc--CC---------CCChHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCCCccch-hHHHHHH
Q 034140 9 SISDEDIMMETSYTV--NN---------RPPIKEIVLAVS-----LLVFGTFGIICGTIMAYNRVGGDRAHG-VFFAVLG 71 (103)
Q Consensus 9 s~s~dd~~~~~q~~~--~~---------kiPwK~I~lA~~-----L~~~G~~ll~~g~l~~~~~~~~d~~~~-~~~lilG 71 (103)
+++|+|-|..+|.+. |+ .++.|..+-.+. =.++|.+|+++++ ++.. ++++.++
T Consensus 18 GV~D~ELFT~EEq~sFlPk~~~~~~~~~~~~~~~~~~~Il~~nDir~LiglIlFVLAl----------~s~p~ialimi~ 87 (189)
T PF05313_consen 18 GVSDEELFTEEEQESFLPKDGGGPGGPDFPGIKNLFPNILMNNDIRSLIGLILFVLAL----------TSTPLIALIMII 87 (189)
T ss_pred CCChhhhcCHHHHHccCCCCCCCCCCCCCccccccchHHHhcccHHHHHHHHHHHHhc----------cCccHHHHHHHH
Confidence 566888887766442 11 234455444332 2456666666554 1111 2333333
Q ss_pred HHHhccchHHHHHHHHHHcC
Q 034140 72 AILFIPGFYYTRIAYYAYKG 91 (103)
Q Consensus 72 ~l~fIPG~Yh~~iay~a~~G 91 (103)
+--++==+=.+.|+||+...
T Consensus 88 iAs~llP~PsLVIaYCl~mq 107 (189)
T PF05313_consen 88 IASLLLPFPSLVIAYCLSMQ 107 (189)
T ss_pred HHHHHcCccHHHHHHHHHhe
Confidence 33222223467899998763
No 102
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=26.74 E-value=1.9e+02 Score=22.08 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHcCCCCcccccCC
Q 034140 65 VFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 101 (103)
Q Consensus 65 ~~~lilG~l~fIPG~Yh~~iay~a~~G~~Gysf~~IP 101 (103)
....+.-++++++...-.....-..+-.+++...+.|
T Consensus 132 l~~~i~~~v~~i~~i~~~~~~~K~~k~i~p~k~~~~~ 168 (248)
T PF11368_consen 132 LFIIIPFLVLLILTIILQKFLRKTIKKIRPEKLPSFF 168 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCC
Confidence 3333333455555554444444444444444444433
No 103
>PF14802 TMEM192: TMEM192 family
Probab=26.67 E-value=1.8e+02 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=24.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034140 24 NNRPPIKEIVLAVSLLVFGTFGIICGTIMAY 54 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~ 54 (103)
++=-||+++.++.+++++.+++.++|..+-.
T Consensus 16 ~~F~pl~Tv~~~~l~ll~~v~l~~~~~vl~~ 46 (236)
T PF14802_consen 16 PRFKPLPTVPIFSLLLLLSVVLAIVGFVLCW 46 (236)
T ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556899999999999999888777776543
No 104
>PF14927 Neurensin: Neurensin
Probab=26.62 E-value=1.1e+02 Score=22.44 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=31.7
Q ss_pred eeccc-ccccCCCccccccccc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034140 3 YVDHA-FSISDEDIMMETSYTV-NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYN 55 (103)
Q Consensus 3 y~~~~-~s~s~dd~~~~~q~~~-~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~ 55 (103)
|-|-+ -|+.|+++ .+..+.. ++.-.|.++.-.+ -|+.|++++++|...+.-
T Consensus 12 Yedctg~s~~e~~~-~~~~~~~~~~~~~w~s~~wkV-~~i~g~l~Ll~Gi~~l~v 64 (140)
T PF14927_consen 12 YEDCTGASIPEDDE-DDDDFQIQPSPSRWSSVCWKV-GFISGLLLLLLGIVALTV 64 (140)
T ss_pred ccCCccccCCCCcc-cccCCCCCCCCCCCcchhHHH-HHHHHHHHHHHHHHHHHh
Confidence 44545 56666666 2333333 3344555555554 789999999999877654
No 105
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=26.53 E-value=76 Score=27.59 Aligned_cols=27 Identities=19% Similarity=0.456 Sum_probs=22.7
Q ss_pred ccccc--CCCCChHHHHHHHHHHHHHHHH
Q 034140 19 TSYTV--NNRPPIKEIVLAVSLLVFGTFG 45 (103)
Q Consensus 19 ~q~~~--~~kiPwK~I~lA~~L~~~G~~l 45 (103)
..|.+ .+++||.++.++...+++|.+|
T Consensus 324 k~~~klsk~gVP~~ai~~s~~~~~~~V~L 352 (462)
T COG1113 324 KAFAKLSKRGVPVNAILLSAVVLLLGVVL 352 (462)
T ss_pred HhHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 34555 8899999999999999998876
No 106
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=26.50 E-value=2.2e+02 Score=20.37 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=7.1
Q ss_pred CCCCChHHHHHHHHHH
Q 034140 24 NNRPPIKEIVLAVSLL 39 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~ 39 (103)
|++-|++...++..+.
T Consensus 98 ~~~y~~~~~~l~~~l~ 113 (193)
T PF06738_consen 98 PPRYPPWLVILAAGLA 113 (193)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4344555444444433
No 107
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=26.50 E-value=88 Score=27.02 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=17.7
Q ss_pred CCCCChHHHH--------HHHHHHHHHHHHHHHHH
Q 034140 24 NNRPPIKEIV--------LAVSLLVFGTFGIICGT 50 (103)
Q Consensus 24 ~~kiPwK~I~--------lA~~L~~~G~~ll~~g~ 50 (103)
.-+++|++=. ++..|+.+|+..++.++
T Consensus 218 ~~~ps~~~~ll~~ItdP~va~ILl~LG~~gLifel 252 (436)
T COG1030 218 TLEPSWRERLLNWITDPSVALILLLLGFLGLIFEL 252 (436)
T ss_pred ecCccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4578888733 45667777777666655
No 108
>PRK10836 lysine transporter; Provisional
Probab=25.64 E-value=2e+02 Score=23.81 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHhccchHHHHHHHHHHcCCC
Q 034140 64 GVFFAVLGAILFIPGFYYTRIAYYAYKGYK 93 (103)
Q Consensus 64 ~~~~lilG~l~fIPG~Yh~~iay~a~~G~~ 93 (103)
+.....+|+.+++. ..+.|+.+|+.|
T Consensus 449 ~~~~~~~g~~~~~~----~~~~~~~~~~~~ 474 (489)
T PRK10836 449 GVAATYIGIPLFLI----IWFGYKLIKGTH 474 (489)
T ss_pred HHHHHHHHHHHHHH----HHHHHHheecCC
Confidence 34566677777552 556677777654
No 109
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=25.55 E-value=77 Score=24.17 Aligned_cols=19 Identities=32% Similarity=0.745 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHhccchHHH
Q 034140 64 GVFFAVLGAILFIPGFYYT 82 (103)
Q Consensus 64 ~~~~lilG~l~fIPG~Yh~ 82 (103)
+..++.+++.+|-||++-=
T Consensus 33 ~~~ll~~~f~lf~P~~~~d 51 (183)
T PF11874_consen 33 SVLLLLIAFTLFRPGFWMD 51 (183)
T ss_pred HHHHHHHHHHHhCchHHHH
Confidence 4699999999999998643
No 110
>PHA02844 putative transmembrane protein; Provisional
Probab=25.35 E-value=1e+02 Score=20.52 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=8.1
Q ss_pred CChHHHHHHHHHHHHHHH
Q 034140 27 PPIKEIVLAVSLLVFGTF 44 (103)
Q Consensus 27 iPwK~I~lA~~L~~~G~~ 44 (103)
.+|+.+.+.++..++..+
T Consensus 46 ~~~~~~ii~i~~v~~~~~ 63 (75)
T PHA02844 46 SSTKIWILTIIFVVFATF 63 (75)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455555544433333333
No 111
>PF14007 YtpI: YtpI-like protein
Probab=25.05 E-value=2.2e+02 Score=19.20 Aligned_cols=62 Identities=23% Similarity=0.407 Sum_probs=38.7
Q ss_pred CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHHHHHHHHHcCCC
Q 034140 26 RPPI-KEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYK 93 (103)
Q Consensus 26 kiPw-K~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~~iay~a~~G~~ 93 (103)
+-|+ |....|=.-...|+.++..|.-.+.. .++..=+|+|+++.+=|......-+.++|-+.
T Consensus 23 ~~p~~k~~~~aka~ialG~fl~~fgiNQ~~~------~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~ 85 (89)
T PF14007_consen 23 KDPMEKKWYSAKANIALGIFLILFGINQMFL------FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYR 85 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4455 44444445555555555555544433 22245578899999999998888887777654
No 112
>PF14143 YrhC: YrhC-like protein
Probab=25.04 E-value=2.1e+02 Score=18.77 Aligned_cols=18 Identities=11% Similarity=0.364 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhccchHHH
Q 034140 65 VFFAVLGAILFIPGFYYT 82 (103)
Q Consensus 65 ~~~lilG~l~fIPG~Yh~ 82 (103)
-.+++.++..|+-|++..
T Consensus 40 ~~~m~~~~~~~l~~a~~f 57 (72)
T PF14143_consen 40 KYIMMGAICIFLAGAFLF 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 366677777777666544
No 113
>PF12821 DUF3815: Protein of unknown function (DUF3815); InterPro: IPR024528 This domain is found in uncharacterised predicted membrane proteins.
Probab=24.91 E-value=1.6e+02 Score=20.17 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHhccchHHHHHHHHHHcCC
Q 034140 63 HGVFFAVLGAILFIPGFYYTRIAYYAYKGY 92 (103)
Q Consensus 63 ~~~~~lilG~l~fIPG~Yh~~iay~a~~G~ 92 (103)
.+..+.+.|++..+||.+-.|-++....+.
T Consensus 73 P~~v~~vpgiipLVPG~~~y~~~~~~~~~~ 102 (130)
T PF12821_consen 73 PATVFIVPGIIPLVPGSLAYRGMYSLVSGN 102 (130)
T ss_pred chHHhhccchheeCCcHHHHHHHHHHHHhh
Confidence 346899999999999999888888777543
No 114
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=24.75 E-value=1.5e+02 Score=20.38 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 034140 37 SLLVFGTFGIICGTIMAYNRVG 58 (103)
Q Consensus 37 ~L~~~G~~ll~~g~l~~~~~~~ 58 (103)
.++.+|.++.+.|...+.|+..
T Consensus 28 ~l~tlGnil~l~s~~fL~Gp~~ 49 (118)
T PF04178_consen 28 ILYTLGNILFLASTFFLIGPKK 49 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888887777643
No 115
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=24.55 E-value=80 Score=22.22 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=8.1
Q ss_pred CCChHHHHHHH
Q 034140 26 RPPIKEIVLAV 36 (103)
Q Consensus 26 kiPwK~I~lA~ 36 (103)
.-||++|..|.
T Consensus 81 e~PWq~VGvaA 91 (104)
T COG4575 81 ENPWQGVGVAA 91 (104)
T ss_pred cCCchHHHHHH
Confidence 46999987654
No 116
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=24.46 E-value=2.4e+02 Score=21.12 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=28.3
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034140 23 VNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRV 57 (103)
Q Consensus 23 ~~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~ 57 (103)
+++|++||.+..+.++..++..++-.+.-.+..+.
T Consensus 185 p~~~~~~~~~~~Ga~~~~~~~~~~~~~f~~y~~~~ 219 (260)
T PF03631_consen 185 PNRRVRWRAALPGALFAAVLWFLLSYGFSLYLSYV 219 (260)
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36689999999999998888888887777666653
No 117
>PF10173 Mit_KHE1: Mitochondrial K+-H+ exchange-related; InterPro: IPR018786 This entry represents a family of proteins conserved from plants to humans. Their function is not known.
Probab=24.45 E-value=29 Score=26.12 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHcCCCCc
Q 034140 65 VFFAVLGAILFIPGFYYTRIAYYAYKGYKGF 95 (103)
Q Consensus 65 ~~~lilG~l~fIPG~Yh~~iay~a~~G~~Gy 95 (103)
.||.++=++==+||+|-++-+|+=||-++|-
T Consensus 149 ~P~~LiPviPNiP~FYl~yRaysh~rAl~G~ 179 (187)
T PF10173_consen 149 LPFALIPVIPNIPFFYLAYRAYSHWRALQGS 179 (187)
T ss_pred cceeeecCCCCccHHHHHHHHHHHHHHHHHH
Confidence 3455555555678999999999988877663
No 118
>COG4682 Predicted membrane protein [Function unknown]
Probab=24.38 E-value=1.8e+02 Score=21.26 Aligned_cols=44 Identities=23% Similarity=0.147 Sum_probs=26.7
Q ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccchhHHHHHHH
Q 034140 27 PPIK-EIVLAVSLLVFGTFGIICGTIMAYNRVG-GDRAHGVFFAVLGA 72 (103)
Q Consensus 27 iPwK-~I~lA~~L~~~G~~ll~~g~l~~~~~~~-~d~~~~~~~lilG~ 72 (103)
+|-| .-++|-+.|++|.+.-.+|+... .+. .++.--.+.+++|.
T Consensus 7 ~~s~af~~va~~~lv~G~vvyLiGLWna--~~qLnEKGYyfaVlvl~~ 52 (128)
T COG4682 7 IVSKAFTIVAWLALVVGAVVYLVGLWNA--CMQLNEKGYYFAVLVLGL 52 (128)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccc--chhhccCceeehhHHHHh
Confidence 3444 36788899999999999988532 222 23322235555553
No 119
>PLN02922 prenyltransferase
Probab=23.82 E-value=2.4e+02 Score=22.75 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=12.4
Q ss_pred hHHHHHHHHHhccchHHH
Q 034140 65 VFFAVLGAILFIPGFYYT 82 (103)
Q Consensus 65 ~~~lilG~l~fIPG~Yh~ 82 (103)
++++++|+++++-|..|+
T Consensus 123 ~~~l~iG~~g~~~~~~Yt 140 (315)
T PLN02922 123 IRVILLLAAAILCGYVYQ 140 (315)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 667777777777666554
No 120
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=23.66 E-value=1.7e+02 Score=19.76 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034140 31 EIVLAVSLLVFGTFGIICGTIM 52 (103)
Q Consensus 31 ~I~lA~~L~~~G~~ll~~g~l~ 52 (103)
-..+.+.|+++|++=+++..+-
T Consensus 33 ~~p~m~~lmllGL~WiVvyYi~ 54 (87)
T PF06781_consen 33 YAPLMLGLMLLGLLWIVVYYIS 54 (87)
T ss_pred HHHHHHHHHHHHHHHHhhhhcc
Confidence 3567788899999988887754
No 121
>PF09600 Cyd_oper_YbgE: Cyd operon protein YbgE (Cyd_oper_YbgE); InterPro: IPR011846 This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria [].
Probab=23.61 E-value=2.2e+02 Score=18.88 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 034140 28 PIKEIVLAVSLLVFGTFGIICGT 50 (103)
Q Consensus 28 PwK~I~lA~~L~~~G~~ll~~g~ 50 (103)
|.|+..+.++|.+.|+++.--..
T Consensus 1 plR~LSlilAl~la~~v~~~P~~ 23 (82)
T PF09600_consen 1 PLRALSLILALALAACVFWDPNR 23 (82)
T ss_pred ChHHHHHHHHHHHHHHHHcCHHH
Confidence 78888888888888888866555
No 122
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=23.50 E-value=3.1e+02 Score=20.19 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=27.3
Q ss_pred cchhHHHHHHHHHhccchHHH--HHHHHHHcCCCCccc
Q 034140 62 AHGVFFAVLGAILFIPGFYYT--RIAYYAYKGYKGFSF 97 (103)
Q Consensus 62 ~~~~~~lilG~l~fIPG~Yh~--~iay~a~~G~~Gysf 97 (103)
.+.+.+-++=.+++.|++|-+ |-+|.|.|-.+..+|
T Consensus 65 ~~~~~lai~y~~~~~P~sf~~wyrplY~A~r~dss~~f 102 (177)
T PF04144_consen 65 GSDFGLAILYLLLGTPASFFCWYRPLYKAFRTDSSFRF 102 (177)
T ss_pred cceehHHHHHHHHHhHHHHHHHHHHHHHHHhcccchHH
Confidence 445677777788999999987 668999986655443
No 123
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=23.48 E-value=1.8e+02 Score=21.15 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=19.2
Q ss_pred cCCCCChHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Q 034140 23 VNNRPPIKEIV--LAVSLLVFGTFGIICGTIMAYNR 56 (103)
Q Consensus 23 ~~~kiPwK~I~--lA~~L~~~G~~ll~~g~l~~~~~ 56 (103)
.....||+--. ||+..+++|.+|+..++ .+++
T Consensus 29 ~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi--~ANR 62 (125)
T PF15048_consen 29 VEDATPWNYSILALSFVVLVISFFLLGRSI--QANR 62 (125)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHh--Hhcc
Confidence 46789998754 45555555655555554 4443
No 124
>PF07556 DUF1538: Protein of unknown function (DUF1538); InterPro: IPR011435 This family of protenis of unknown function contains several conserved glycines and phenylalanines.
Probab=23.19 E-value=1.1e+02 Score=23.78 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=27.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 034140 24 NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVG 58 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~ 58 (103)
.++.-.+.+.....+.++|..+...|.-+-.-+++
T Consensus 15 ~~~~~~~~~~~G~~~v~iGL~lFl~Gv~~g~~PiG 49 (212)
T PF07556_consen 15 LPIKNLIRFLVGLVLVIIGLTLFLLGVDIGFMPIG 49 (212)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555678999999999999999988876665554
No 125
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=23.14 E-value=2.3e+02 Score=25.78 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHHH
Q 034140 29 IKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTR 83 (103)
Q Consensus 29 wK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~~ 83 (103)
|-++..++..-++|+..+..++.-+.... .+..++..+++++++.+.|+.+...
T Consensus 565 ~~~~~~~~~~a~ig~~~~~aa~~Gy~~~~-~~~~~r~~l~~~~~~l~~p~~~~~~ 618 (642)
T COG4666 565 FAEILLAFATAVIGILALGAASSGYLFGR-TALWERLLLIVAAFLLIIPSLIADI 618 (642)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcc-cHHHHHHHHHHHHHHHHccHHHHHH
Confidence 66888888888889888887775433221 2355678999999999999998764
No 126
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=22.86 E-value=2.2e+02 Score=25.39 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=39.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchH
Q 034140 24 NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFY 80 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Y 80 (103)
.|+.||.-..=.+..+++...|.. .+|.+-+|+.|++.++..=.++|+.+.-
T Consensus 241 ENPt~~sN~~e~~~illIP~al~~-----~fG~~~~~~rqg~~i~~~m~~lf~~~~~ 292 (552)
T PF03814_consen 241 ENPTPLSNFLEMLSILLIPAALPF-----TFGRMVGDRRQGWAIFAVMLVLFIVGLA 292 (552)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 678899888877777777766655 4556667888999888887777777653
No 127
>PF11321 DUF3123: Protein of unknown function (DUF3123); InterPro: IPR021470 This eukaryotic family of proteins has no known function.
Probab=22.49 E-value=37 Score=24.24 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=18.4
Q ss_pred ccccccCCCccccccccc--CCCCChHH
Q 034140 6 HAFSISDEDIMMETSYTV--NNRPPIKE 31 (103)
Q Consensus 6 ~~~s~s~dd~~~~~q~~~--~~kiPwK~ 31 (103)
+..|-+||||+.+--|+. |+.=|.++
T Consensus 24 vVVS~AdedG~l~VvY~~nfp~~DP~~t 51 (113)
T PF11321_consen 24 VVVSAADEDGYLEVVYNGNFPRGDPFRT 51 (113)
T ss_pred EEEecccCCCcEEEEecCCCCCCCCccc
Confidence 356778899999888875 55555554
No 128
>COG2149 Predicted membrane protein [Function unknown]
Probab=22.43 E-value=3.1e+02 Score=19.81 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=29.5
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034140 19 TSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNR 56 (103)
Q Consensus 19 ~q~~~~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~ 56 (103)
.||...-.+|-+.-.++.+|.++|..++..|.+=+...
T Consensus 44 ~~f~~~l~~~~~r~~lg~fii~~gil~~a~g~~r~~~~ 81 (120)
T COG2149 44 DQFVPFLATPVIRELLGVFLILVGILLAALGALRWQRV 81 (120)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555445888888899999999999999998877654
No 129
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=22.26 E-value=79 Score=21.34 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=25.6
Q ss_pred CCCcccccccccCCCCChHH--HHHHHHHHHHHHHHHHHHHH
Q 034140 12 DEDIMMETSYTVNNRPPIKE--IVLAVSLLVFGTFGIICGTI 51 (103)
Q Consensus 12 ~dd~~~~~q~~~~~kiPwK~--I~lA~~L~~~G~~ll~~g~l 51 (103)
+.|.|++.+|.=...-=||- |.+|+..+.+.+.++.+-.+
T Consensus 32 ~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~ 73 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFI 73 (103)
T ss_pred eHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557777776544456775 77777777777666665443
No 130
>PF06432 GPI2: Phosphatidylinositol N-acetylglucosaminyltransferase; InterPro: IPR009450 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively.; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=22.26 E-value=3.1e+02 Score=21.62 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=36.0
Q ss_pred ccCCCccccccccc-------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhc
Q 034140 10 ISDEDIMMETSYTV-------NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFI 76 (103)
Q Consensus 10 ~s~dd~~~~~q~~~-------~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fI 76 (103)
+.=.|-|+|.+|-+ .++..+++++.....+.-=+..+++-..++.. +..++-+...+..+...+.+
T Consensus 9 Q~ypDNYtd~sFL~~l~~N~~~~~~~y~~~v~~~~~v~q~is~v~lf~~~F~~-l~~~~~~~~~~~~~~~~~~~ 81 (282)
T PF06432_consen 9 QPYPDNYTDPSFLEELRRNVNVRKYSYWELVLDSLVVSQQISSVVLFLLVFVY-LYEGRLSPRVLLWISTALTL 81 (282)
T ss_pred CCCCCCCCCHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCChHHHHHHHHHHHH
Confidence 34467888888875 34567788887777666555444444444432 33233333344444444433
No 131
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=21.93 E-value=78 Score=26.65 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 034140 30 KEIVLAVSLLVFGTFGIICGTIMAYNRVG 58 (103)
Q Consensus 30 K~I~lA~~L~~~G~~ll~~g~l~~~~~~~ 58 (103)
|-=.|+++.+++|++|+.+|+.+..-++-
T Consensus 307 kN~FLgI~YLvVG~ic~~l~~~f~~~~l~ 335 (351)
T KOG2952|consen 307 KNPFLGIAYLVVGSICILLGLIFLVIYLF 335 (351)
T ss_pred CCccceehHHHHHHHHHHHHHHHHHHHhh
Confidence 55678999999999999999987766543
No 132
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=21.28 E-value=1.1e+02 Score=25.12 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=17.5
Q ss_pred ccccCCCccccccccc--CCCCChHHHHHHHH
Q 034140 8 FSISDEDIMMETSYTV--NNRPPIKEIVLAVS 37 (103)
Q Consensus 8 ~s~s~dd~~~~~q~~~--~~kiPwK~I~lA~~ 37 (103)
.+.++| |..-..|.+ +++.|++++.+...
T Consensus 322 ~a~ard-g~lP~~~~kv~~~~tP~~Ai~~~~~ 352 (469)
T PRK11049 322 FGLAQE-GVAPKAFAKLSKRAVPAKGLTFSCI 352 (469)
T ss_pred HHHHhC-CCCCHHHHhhCCCCCCHHHHHHHHH
Confidence 445544 444445555 56899999766543
No 133
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=21.04 E-value=1.2e+02 Score=22.53 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 034140 24 NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD 60 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d 60 (103)
..-+||-..+.++.+|.+|.+-|.-|.+ ....+.+
T Consensus 92 ~dvP~~~~~~~S~~~Fg~gllGisYGil--SaSWD~~ 126 (153)
T PF11947_consen 92 VDVPPWAVLLVSLVFFGLGLLGISYGIL--SASWDPE 126 (153)
T ss_pred cccCchHHHHHHHHHHHHHHHhhhhhhc--ccccCCC
Confidence 4457888888888888888877777774 4455544
No 134
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=20.97 E-value=2.1e+02 Score=21.22 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=24.3
Q ss_pred ccc-cCCCCChHH------HHHHHHHHHHHHHHHHHHHHHH
Q 034140 20 SYT-VNNRPPIKE------IVLAVSLLVFGTFGIICGTIMA 53 (103)
Q Consensus 20 q~~-~~~kiPwK~------I~lA~~L~~~G~~ll~~g~l~~ 53 (103)
+|. ++.+.||-+ ..+|=+||.+|--+++=+.+..
T Consensus 7 ~~r~~~~~~~~~~~~~~~~~~~AGaLF~~gwWi~iDa~v~s 47 (166)
T PF05255_consen 7 LFRFCPPWFDWSEKRNAIGSYVAGALFALGWWIFIDAAVYS 47 (166)
T ss_pred cccccCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555 566777733 6778888888888888777654
No 135
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=20.93 E-value=1.7e+02 Score=19.49 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034140 31 EIVLAVSLLVFGTFGIICGTIMAYNR 56 (103)
Q Consensus 31 ~I~lA~~L~~~G~~ll~~g~l~~~~~ 56 (103)
.|++++++|.++++-.+.+++.=.|.
T Consensus 30 vvl~ml~~fa~l~ly~~~~ai~~~Gk 55 (85)
T PF13150_consen 30 VVLVMLVLFAALCLYMTVSAIYDIGK 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36677777777777777777655553
No 136
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.61 E-value=1.5e+02 Score=21.11 Aligned_cols=52 Identities=21% Similarity=0.232 Sum_probs=28.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CC--ccchhHHHHHHHHHhc
Q 034140 25 NRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVG-------GD--RAHGVFFAVLGAILFI 76 (103)
Q Consensus 25 ~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~-------~d--~~~~~~~lilG~l~fI 76 (103)
+.+|.-.-.++.+|+++|.++..+|.+=+.--.| .. .+-+..+.++|.++..
T Consensus 5 ~~~~~~~~il~~~lll~G~~f~l~gaiGllR~PD~ytRlHAatKa~TlG~~liL~g~~l~~ 65 (120)
T PRK12671 5 ADIPLWAAILVAFFLVLGAGLTLIGTIGLVRLKSFYERLHAPTLGTSWGAGGILIASILYF 65 (120)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhcchhhhhhhHHHHHHHHHHHh
Confidence 3455444455566777788888777753332111 11 1223566777766543
No 137
>PLN02833 glycerol acyltransferase family protein
Probab=20.33 E-value=1.5e+02 Score=24.64 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=16.9
Q ss_pred ccccCCCcccccccccCCCCChHHHHHHHHHHHHH
Q 034140 8 FSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFG 42 (103)
Q Consensus 8 ~s~s~dd~~~~~q~~~~~kiPwK~I~lA~~L~~~G 42 (103)
.+|+||| | +..|+.++..+|.--.-=+.++++|
T Consensus 57 ~~i~dd~-~-~~~f~~~~~~~~n~~~~l~~~w~~g 89 (376)
T PLN02833 57 SAIVDDS-F-TRCFKSNPPEPWNWNIYLFPLWCVG 89 (376)
T ss_pred Hhhhhhh-h-hhccCCCCCCCcchhhHHHHHHHHH
Confidence 3455443 3 5667765555765433333444444
No 138
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=20.31 E-value=1.2e+02 Score=23.47 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034140 30 KEIVLAVSLLVFGTFGIICGTI 51 (103)
Q Consensus 30 K~I~lA~~L~~~G~~ll~~g~l 51 (103)
|..+.+++|.++|.+|..++++
T Consensus 2 ~~~~~s~vl~lig~~L~~~al~ 23 (211)
T PF07062_consen 2 KLLVFSFVLILIGLILTFIALF 23 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHc
Confidence 5678899999999999998884
No 139
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=20.19 E-value=1.9e+02 Score=21.96 Aligned_cols=34 Identities=3% Similarity=-0.223 Sum_probs=24.1
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034140 23 VNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNR 56 (103)
Q Consensus 23 ~~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~ 56 (103)
+++|+|||.+..+.++..++..+.-.+.-.+..+
T Consensus 185 P~~~~~~r~~~~Ga~~a~v~w~~~~~~f~~Yv~~ 218 (259)
T TIGR00765 185 PNKKVKHRHAFVGAFFAAVLFELAKWLFTFYVST 218 (259)
T ss_pred CCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899998888888777777666665555444
Done!