Query 034140
Match_columns 103
No_of_seqs 101 out of 126
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:24:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ux4_A Acid-activated UREA cha 52.4 16 0.00055 27.2 4.0 41 34-76 2-42 (195)
2 2jo1_A Phospholemman; FXYD1, N 41.7 25 0.00084 22.4 3.1 19 31-49 20-38 (72)
3 2jp3_A FXYD domain-containing 34.2 23 0.00079 22.2 2.0 20 30-49 20-39 (67)
4 2knc_B Integrin beta-3; transm 27.0 1.1E+02 0.0037 19.2 4.4 27 24-50 5-31 (79)
5 2zxe_G FXYD10, phospholemman-l 26.5 29 0.00098 22.2 1.5 16 32-47 24-39 (74)
6 2l8s_A Integrin alpha-1; trans 23.1 1.3E+02 0.0043 17.9 4.4 15 24-38 4-18 (54)
7 1g92_A Poneratoxin, PAC-TX; ne 19.5 27 0.00092 17.9 0.3 15 65-79 2-16 (26)
8 2k9j_B Integrin beta-3; transm 14.8 1.8E+02 0.0061 16.1 3.8 16 24-39 4-19 (43)
9 2knc_A Integrin alpha-IIB; tra 14.2 2.1E+02 0.0073 16.8 4.6 15 24-38 7-21 (54)
10 1v54_D Cytochrome C oxidase su 14.1 1.9E+02 0.0064 20.3 3.7 28 24-51 73-100 (147)
No 1
>3ux4_A Acid-activated UREA channel; transport protein; HET: XP4; 3.26A {Helicobacter pylori}
Probab=52.38 E-value=16 Score=27.22 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhc
Q 034140 34 LAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFI 76 (103)
Q Consensus 34 lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fI 76 (103)
+++.|+.+|.+|+.=|..+ .++++ +|+.+.-=++.|.+.++
T Consensus 2 lgv~LLyVGaVL~~NGl~l-Lgki~-~k~~av~NlfvG~l~li 42 (195)
T 3ux4_A 2 LGLVLLYVGIVLISNGICG-LTKVD-PKSTAVMNFFVGGLSIV 42 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTCCC-HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH-hCCCC-ccceeehhHHHHHHHHH
Confidence 6788999999999988865 45654 56655555666777664
No 2
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=41.71 E-value=25 Score=22.40 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034140 31 EIVLAVSLLVFGTFGIICG 49 (103)
Q Consensus 31 ~I~lA~~L~~~G~~ll~~g 49 (103)
-...|.+||++|+++|..+
T Consensus 20 GLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 20 GLVIAGILFILGILIVLSR 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcC
Confidence 3678888999998888776
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=34.21 E-value=23 Score=22.23 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034140 30 KEIVLAVSLLVFGTFGIICG 49 (103)
Q Consensus 30 K~I~lA~~L~~~G~~ll~~g 49 (103)
--...|.+||++|+++|..+
T Consensus 20 gGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 20 GGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHcC
Confidence 34677888888888887765
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.00 E-value=1.1e+02 Score=19.15 Aligned_cols=27 Identities=15% Similarity=-0.042 Sum_probs=15.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHH
Q 034140 24 NNRPPIKEIVLAVSLLVFGTFGIICGT 50 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~~~G~~ll~~g~ 50 (103)
|++++.-.|+++++.-++.+.|+++-+
T Consensus 5 p~~~n~~~Iv~gvi~gilliGllllli 31 (79)
T 2knc_B 5 SKGPDILVVLLSVMGAILLIGLAALLI 31 (79)
T ss_dssp CSSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 466777788777665554444444333
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=26.51 E-value=29 Score=22.18 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 034140 32 IVLAVSLLVFGTFGII 47 (103)
Q Consensus 32 I~lA~~L~~~G~~ll~ 47 (103)
...|.+||++|+++|.
T Consensus 24 LifA~vLfi~GI~iil 39 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHH
Confidence 5566666666665554
No 6
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=23.10 E-value=1.3e+02 Score=17.93 Aligned_cols=15 Identities=27% Similarity=0.322 Sum_probs=11.4
Q ss_pred CCCCChHHHHHHHHH
Q 034140 24 NNRPPIKEIVLAVSL 38 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L 38 (103)
|.++||.-|++|+..
T Consensus 4 ~~~vp~WiIi~svl~ 18 (54)
T 2l8s_A 4 PGRVPLWVILLSAFA 18 (54)
T ss_dssp CCCCCTHHHHHHHHH
T ss_pred CccCchHHHHHHHHH
Confidence 567999988877653
No 7
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=19.49 E-value=27 Score=17.89 Aligned_cols=15 Identities=27% Similarity=0.611 Sum_probs=10.8
Q ss_pred hHHHHHHHHHhccch
Q 034140 65 VFFAVLGAILFIPGF 79 (103)
Q Consensus 65 ~~~lilG~l~fIPG~ 79 (103)
.|++|+|.+..-|-+
T Consensus 2 lpllilgsllmtppv 16 (26)
T 1g92_A 2 LPLLILGSLLMTPPV 16 (26)
T ss_dssp HHHHHHHTCSSSCCT
T ss_pred chHHHHHHHhcCcHH
Confidence 478888888776643
No 8
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=14.77 E-value=1.8e+02 Score=16.13 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=10.1
Q ss_pred CCCCChHHHHHHHHHH
Q 034140 24 NNRPPIKEIVLAVSLL 39 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~ 39 (103)
|++++..+|++++...
T Consensus 4 p~~~n~~~Iv~gvi~~ 19 (43)
T 2k9j_B 4 PKGPDILVVLLSVMGA 19 (43)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred CCCCCEeehHHHHHHH
Confidence 5566777777665543
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=14.23 E-value=2.1e+02 Score=16.80 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=11.4
Q ss_pred CCCCChHHHHHHHHH
Q 034140 24 NNRPPIKEIVLAVSL 38 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L 38 (103)
+.++||.-|++|+..
T Consensus 7 ~~~vp~wiIi~svl~ 21 (54)
T 2knc_A 7 ERAIPIWWVLVGVLG 21 (54)
T ss_dssp TTTCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHH
Confidence 567999988877653
No 10
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=14.15 E-value=1.9e+02 Score=20.33 Aligned_cols=28 Identities=14% Similarity=-0.058 Sum_probs=15.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 034140 24 NNRPPIKEIVLAVSLLVFGTFGIICGTI 51 (103)
Q Consensus 24 ~~kiPwK~I~lA~~L~~~G~~ll~~g~l 51 (103)
.+.--||.|+.++++++.-++++++..=
T Consensus 73 ~p~gewK~v~g~v~~~i~~s~~~f~~~r 100 (147)
T 1v54_D 73 RSTNEWKTVVGAAMFFIGFTALLLIWEK 100 (147)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445789887776555544444444333
Done!