Query 034140
Match_columns 103
No_of_seqs 101 out of 126
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 17:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034140.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034140hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u19a_ f.13.1.2 (A:) Rhodopsi 40.7 43 0.0031 21.9 6.4 36 12-47 15-53 (348)
2 d1xioa_ f.13.1.1 (A:) Sensory 25.6 87 0.0064 20.7 6.2 49 37-85 6-55 (226)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 24.5 55 0.004 18.0 5.3 23 28-50 4-26 (57)
4 d1rh5b_ f.23.28.1 (B:) Preprot 18.2 80 0.0058 17.5 4.1 27 24-50 15-46 (56)
5 d1r3jc_ f.14.1.1 (C:) Potassiu 12.8 1.3E+02 0.0093 17.2 5.3 15 29-43 5-19 (103)
6 d1xl4a2 f.14.1.1 (A:23-138) In 12.3 1.3E+02 0.0092 17.5 3.8 34 13-46 8-41 (116)
7 d1m0ka_ f.13.1.1 (A:) Bacterio 10.6 1.9E+02 0.014 19.2 4.7 26 60-85 32-57 (227)
8 d1v54d_ f.23.1.1 (D:) Mitochon 9.7 1.8E+02 0.013 18.7 4.0 24 25-49 71-94 (144)
9 d2hi7b1 a.29.15.1 (B:14-162) D 8.4 2E+02 0.014 17.4 3.8 11 62-72 33-43 (149)
10 d1e12a_ f.13.1.1 (A:) Halorhod 7.6 3.1E+02 0.022 18.1 6.3 26 60-85 33-58 (239)
No 1
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=40.69 E-value=43 Score=21.93 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=22.7
Q ss_pred CCCccccccccc---CCCCChHHHHHHHHHHHHHHHHHH
Q 034140 12 DEDIMMETSYTV---NNRPPIKEIVLAVSLLVFGTFGII 47 (103)
Q Consensus 12 ~dd~~~~~q~~~---~~kiPwK~I~lA~~L~~~G~~ll~ 47 (103)
++-+-++.||+. +-..||+-.+++.++.++..+-++
T Consensus 15 n~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~gi~ 53 (348)
T d1u19a_ 15 NKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFP 53 (348)
T ss_dssp CTTSCCCCTTTSCCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 344455667765 345799988888777766554433
No 2
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=25.56 E-value=87 Score=20.72 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccC-CCccchhHHHHHHHHHhccchHHHHHH
Q 034140 37 SLLVFGTFGIICGTIMAYNRVG-GDRAHGVFFAVLGAILFIPGFYYTRIA 85 (103)
Q Consensus 37 ~L~~~G~~ll~~g~l~~~~~~~-~d~~~~~~~lilG~l~fIPG~Yh~~ia 85 (103)
.++-+++.....+++.+..... .+..++....+...+|++-+.-|..++
T Consensus 6 ~~~wv~~~~m~~~~~~f~~~~~~~~~~~r~~~~~~~~I~~iA~~~Y~~ma 55 (226)
T d1xioa_ 6 LLHWIYVAGMTIGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMA 55 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666665544332 334445667777888888887665554
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=24.48 E-value=55 Score=17.98 Aligned_cols=23 Identities=17% Similarity=-0.061 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 034140 28 PIKEIVLAVSLLVFGTFGIICGT 50 (103)
Q Consensus 28 PwK~I~lA~~L~~~G~~ll~~g~ 50 (103)
-||+...+++++++..++.....
T Consensus 4 ~~R~~~~~~~~~~i~i~~~s~~~ 26 (57)
T d2h8pc1 4 HWRAAGAATVLLVIVLLAGSYLA 26 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888887777665443333
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=18.24 E-value=80 Score=17.50 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=16.5
Q ss_pred CCCCChHH-----HHHHHHHHHHHHHHHHHHH
Q 034140 24 NNRPPIKE-----IVLAVSLLVFGTFGIICGT 50 (103)
Q Consensus 24 ~~kiPwK~-----I~lA~~L~~~G~~ll~~g~ 50 (103)
-+|+-|++ .+.|+..+++|.+-.++-.
T Consensus 15 ~~KP~~~Ef~~ia~v~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 15 LKKPTKDEYLAVAKVTALGISLLGIIGYIIHV 46 (56)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777776 4556666666665555444
No 5
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=12.81 E-value=1.3e+02 Score=17.23 Aligned_cols=15 Identities=27% Similarity=0.109 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHH
Q 034140 29 IKEIVLAVSLLVFGT 43 (103)
Q Consensus 29 wK~I~lA~~L~~~G~ 43 (103)
||....+++++++-.
T Consensus 5 ~r~~~~~~~~~~~~~ 19 (103)
T d1r3jc_ 5 WRAAGAATVLLVIVL 19 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788887777776643
No 6
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=12.30 E-value=1.3e+02 Score=17.45 Aligned_cols=34 Identities=9% Similarity=-0.002 Sum_probs=19.4
Q ss_pred CCcccccccccCCCCChHHHHHHHHHHHHHHHHH
Q 034140 13 EDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGI 46 (103)
Q Consensus 13 dd~~~~~q~~~~~kiPwK~I~lA~~L~~~G~~ll 46 (103)
.-|+.+..|..--+.||+...+.+++..+...++
T Consensus 8 ~~g~~~D~f~~ll~~~~~~~~~~~~~~~~~~~~~ 41 (116)
T d1xl4a2 8 KRGWLDDHYHDLLTVSWPVFITLITGLYLVTNAL 41 (116)
T ss_dssp CCCSSCSSTTHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554434678887776666555544443
No 7
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=10.64 E-value=1.9e+02 Score=19.20 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=18.4
Q ss_pred CccchhHHHHHHHHHhccchHHHHHH
Q 034140 60 DRAHGVFFAVLGAILFIPGFYYTRIA 85 (103)
Q Consensus 60 d~~~~~~~lilG~l~fIPG~Yh~~ia 85 (103)
+..++....+.+.+|+|-+.-|.+++
T Consensus 32 ~~~~r~~~~~~~~i~~IA~~~Y~~ma 57 (227)
T d1m0ka_ 32 DPDAKKFYAITTLVPAIAFTMYLSML 57 (227)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 33446788888999988876655544
No 8
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.67 E-value=1.8e+02 Score=18.70 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=12.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Q 034140 25 NRPPIKEIVLAVSLLVFGTFGIICG 49 (103)
Q Consensus 25 ~kiPwK~I~lA~~L~~~G~~ll~~g 49 (103)
++-=||+|+.++++ .+|+.+++..
T Consensus 71 p~gewK~v~g~~~~-~i~~s~~i~~ 94 (144)
T d1v54d_ 71 STNEWKTVVGAAMF-FIGFTALLLI 94 (144)
T ss_dssp CCSHHHHHHHHHHH-HHHHHHHHHH
T ss_pred CCCchhHHHHHHHH-HHHHHHHHHH
Confidence 34557888766544 4444444333
No 9
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}
Probab=8.37 E-value=2e+02 Score=17.37 Aligned_cols=11 Identities=9% Similarity=-0.221 Sum_probs=4.9
Q ss_pred cchhHHHHHHH
Q 034140 62 AHGVFFAVLGA 72 (103)
Q Consensus 62 ~~~~~~lilG~ 72 (103)
.||+++..++.
T Consensus 33 ~QR~~~~~i~~ 43 (149)
T d2hi7b1 33 YERVALFGVLG 43 (149)
T ss_dssp HHHHHHHTTTH
T ss_pred HHHHHHHHHHH
Confidence 34555443333
No 10
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=7.57 E-value=3.1e+02 Score=18.08 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=19.3
Q ss_pred CccchhHHHHHHHHHhccchHHHHHH
Q 034140 60 DRAHGVFFAVLGAILFIPGFYYTRIA 85 (103)
Q Consensus 60 d~~~~~~~lilG~l~fIPG~Yh~~ia 85 (103)
+..++....+.+++|++-+.-|.+++
T Consensus 33 ~~~~R~~~~l~~~I~~IA~~~Y~~Ma 58 (239)
T d1e12a_ 33 PGRPRLIWGATLMIPLVSISSYLGLL 58 (239)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 44556788899999999887665543
Done!