Query 034141
Match_columns 103
No_of_seqs 101 out of 131
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 10:13:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03669 UPF0139: Uncharacteri 100.0 1E-44 2.2E-49 248.3 11.9 97 6-103 3-103 (103)
2 KOG3462 Predicted membrane pro 100.0 2.1E-42 4.6E-47 233.7 11.6 97 6-103 3-104 (105)
3 PF03511 Fanconi_A: Fanconi an 77.7 2.8 6E-05 26.7 2.6 21 78-98 5-25 (64)
4 PF14235 DUF4337: Domain of un 73.3 9 0.0002 27.8 4.8 31 36-66 121-151 (157)
5 PF13828 DUF4190: Domain of un 72.9 20 0.00043 22.3 5.8 37 35-72 2-38 (62)
6 PF14256 YwiC: YwiC-like prote 68.1 38 0.00083 23.6 7.9 62 32-94 63-129 (129)
7 PF06363 Picorna_P3A: Picornav 62.6 9.5 0.00021 26.1 2.8 27 39-67 57-83 (100)
8 PF09882 DUF2109: Predicted me 55.9 45 0.00097 22.0 5.0 43 52-98 5-49 (78)
9 PRK12895 ubiA prenyltransferas 43.8 1.6E+02 0.0035 23.2 7.6 58 35-94 90-149 (286)
10 PF10215 Ost4: Oligosaccaryltr 40.9 45 0.00098 18.7 2.9 22 72-93 4-25 (35)
11 COG3312 AtpI F0F1-type ATP syn 36.2 93 0.002 22.3 4.5 38 33-70 35-72 (128)
12 PF03609 EII-Sor: PTS system s 34.7 2.1E+02 0.0045 21.9 7.1 52 32-94 180-237 (238)
13 PF03729 DUF308: Short repeat 33.7 1E+02 0.0022 17.9 7.4 57 36-92 11-67 (72)
14 PRK06080 1,4-dihydroxy-2-napht 33.3 2.2E+02 0.0048 21.8 7.0 46 49-94 111-160 (293)
15 PF14937 DUF4500: Domain of un 33.0 41 0.00088 22.5 2.2 18 78-95 38-55 (86)
16 PF12359 DUF3645: Protein of u 31.3 28 0.00062 19.5 1.0 17 9-25 2-18 (34)
17 PF12301 CD99L2: CD99 antigen 31.0 46 0.00099 24.7 2.4 17 78-94 120-136 (169)
18 PRK00159 putative septation in 29.5 1.8E+02 0.0038 19.5 5.5 16 77-92 68-83 (87)
19 COG4743 Predicted membrane pro 28.6 43 0.00094 26.9 2.0 24 78-101 176-199 (316)
20 COG2917 Intracellular septatio 28.4 2.5E+02 0.0053 21.2 5.9 39 56-96 32-70 (180)
21 PF01679 Pmp3: Proteolipid mem 27.8 88 0.0019 18.7 2.9 32 35-66 6-39 (51)
22 COG3308 Predicted membrane pro 27.4 66 0.0014 23.0 2.6 18 49-66 94-111 (131)
23 PF05817 Ribophorin_II: Oligos 26.9 4.3E+02 0.0092 23.4 7.9 13 81-93 589-601 (636)
24 PF10742 DUF2555: Protein of u 26.3 23 0.00049 22.0 0.1 11 11-21 45-55 (57)
25 TIGR01598 holin_phiLC3 holin, 26.0 1.6E+02 0.0034 19.2 4.0 21 81-101 47-67 (78)
26 TIGR02595 PEP_exosort PEP-CTER 25.9 93 0.002 15.9 2.4 18 34-51 5-22 (26)
27 PF13572 DUF4134: Domain of un 24.3 2.3E+02 0.005 19.1 5.6 40 51-90 49-88 (98)
28 PF06781 UPF0233: Uncharacteri 24.2 2.2E+02 0.0048 18.9 5.2 16 77-92 68-83 (87)
29 PHA02414 hypothetical protein 22.2 1.1E+02 0.0024 21.2 2.8 23 72-94 84-106 (111)
30 PF11833 DUF3353: Protein of u 21.9 2.1E+02 0.0044 21.5 4.5 16 55-70 121-136 (194)
31 PHA00724 hypothetical protein 21.6 2.5E+02 0.0053 18.4 4.8 37 31-67 6-42 (83)
32 PF13042 DUF3902: Protein of u 21.1 3.5E+02 0.0077 20.0 7.2 42 52-93 33-85 (161)
33 PF14126 DUF4293: Domain of un 20.5 3.2E+02 0.007 19.4 6.9 20 75-94 112-131 (149)
34 COG4665 FcbT2 TRAP-type mannit 20.3 3.9E+02 0.0085 20.2 6.2 33 30-65 92-124 (182)
No 1
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=100.00 E-value=1e-44 Score=248.34 Aligned_cols=97 Identities=45% Similarity=0.837 Sum_probs=92.2
Q ss_pred CCCCCCCCCCccccccCCCCC----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhHHHH
Q 034141 6 NSNDPRQPSAAKPYVSTAVAP----EDLPVDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSLANMRNMETDLKQISMA 81 (103)
Q Consensus 6 ~~~DpRRpdlivpy~~p~~~~----~d~~~D~~s~l~~~l~m~am~mRnK~~aW~al~~s~~s~~N~k~~e~d~kq~~~~ 81 (103)
+++||||||+|+||++|+.++ ||+++||+++||++|+|+|+|||+|||+|+|++||++||+|+|+ |+|.||++++
T Consensus 3 ~~~DPRRp~~i~~y~~p~~~~~~~~ed~~~Dy~~~L~~~~~m~gl~mr~K~~aW~al~~s~~S~an~k~-~~d~kq~~ss 81 (103)
T PF03669_consen 3 SSSDPRRPDLIVPYKPPPASPNQPQEDPPPDYMSFLGMIFSMAGLMMRNKWCAWAALFFSCQSFANMKS-SNDTKQISSS 81 (103)
T ss_pred CCCCCCCccccccCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-cccchHHHHH
Confidence 558999999999999999766 78899999999999999999999999999999999999999999 7799999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCC
Q 034141 82 MMFALMGLVTNYLGPARPGTKS 103 (103)
Q Consensus 82 v~~sv~alv~~Yl~~~~p~~~~ 103 (103)
|+|||+|||++|||+|+|+++.
T Consensus 82 ~m~sv~alvm~Yl~~~~p~~~~ 103 (103)
T PF03669_consen 82 FMFSVMALVMSYLQPPSPMTPP 103 (103)
T ss_pred HHHHHHHHHHHHcCCCCCCCCc
Confidence 9999999999999999999864
No 2
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.1e-42 Score=233.73 Aligned_cols=97 Identities=47% Similarity=0.837 Sum_probs=92.9
Q ss_pred CCCCCCCCCCccccccCCCCC-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhHHH
Q 034141 6 NSNDPRQPSAAKPYVSTAVAP-----EDLPVDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSLANMRNMETDLKQISM 80 (103)
Q Consensus 6 ~~~DpRRpdlivpy~~p~~~~-----~d~~~D~~s~l~~~l~m~am~mRnK~~aW~al~~s~~s~~N~k~~e~d~kq~~~ 80 (103)
+.+|||||+.++||++|+..+ ||+.+||+++||++|+|+|+|+|.|||+|+|++||++||+|+|+.| |.||+.+
T Consensus 3 ~~~DPRrp~~i~rYkp~p~~~~~~~~eD~~pdYmn~lgmIfsmcGlM~r~KwCsWlAl~cs~iSfAn~R~se-D~KQi~s 81 (105)
T KOG3462|consen 3 SVNDPRRPNKIKRYKPPPSAPQGAANEDPPPDYMNFLGMIFSMCGLMFRLKWCSWLALYCSCISFANSRNSE-DAKQISS 81 (105)
T ss_pred CCCCCCCcccccCCCCCCCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHH
Confidence 458999999999999998776 8999999999999999999999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCC
Q 034141 81 AMMFALMGLVTNYLGPARPGTKS 103 (103)
Q Consensus 81 ~v~~sv~alv~~Yl~~~~p~~~~ 103 (103)
++|+|++||||+|||||+|.|+.
T Consensus 82 sfMlsisavVmsYLqnp~p~tpp 104 (105)
T KOG3462|consen 82 SFMLSISAVVMSYLQNPRPMTPP 104 (105)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999874
No 3
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=77.65 E-value=2.8 Score=26.66 Aligned_cols=21 Identities=38% Similarity=0.849 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 034141 78 ISMAMMFALMGLVTNYLGPAR 98 (103)
Q Consensus 78 ~~~~v~~sv~alv~~Yl~~~~ 98 (103)
.++-+.||+|+|+.+|+.|..
T Consensus 5 LvsLfFFSLM~LlSs~l~p~~ 25 (64)
T PF03511_consen 5 LVSLFFFSLMGLLSSYLAPKE 25 (64)
T ss_pred HHHHHHHHHHHHHHHhcCccc
Confidence 466788999999999998764
No 4
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=73.32 E-value=9 Score=27.84 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034141 36 FIAVIFGLAGVMFRYKLCSWLAIICCAQSLA 66 (103)
Q Consensus 36 ~l~~~l~m~am~mRnK~~aW~al~~s~~s~~ 66 (103)
-++.+|+=+.+.+|.||+.|+++.+++..++
T Consensus 121 QIaI~Lasit~Lt~~~~l~~~~~~~g~~G~~ 151 (157)
T PF14235_consen 121 QIAIVLASITALTKKKWLWYASLGLGAVGVA 151 (157)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3566788888899999999999998877654
No 5
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=72.91 E-value=20 Score=22.26 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 034141 35 GFIAVIFGLAGVMFRYKLCSWLAIICCAQSLANMRNME 72 (103)
Q Consensus 35 s~l~~~l~m~am~mRnK~~aW~al~~s~~s~~N~k~~e 72 (103)
.+.+++++.++++.= -+++=++++|...+.-..|.++
T Consensus 2 Aiaslvlgi~~~~~~-~~~~i~aiilG~ial~~i~r~~ 38 (62)
T PF13828_consen 2 AIASLVLGILGLFLC-GLLGIVAIILGHIALRQIRRSG 38 (62)
T ss_pred cHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhccC
Confidence 356788888888883 4566677888888886655433
No 6
>PF14256 YwiC: YwiC-like protein
Probab=68.07 E-value=38 Score=23.65 Aligned_cols=62 Identities=29% Similarity=0.490 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCCcc-hhhHHHHHHHHHHHHHHHhc
Q 034141 32 DYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSLAN----MRNMETD-LKQISMAMMFALMGLVTNYL 94 (103)
Q Consensus 32 D~~s~l~~~l~m~am~mRnK~~aW~al~~s~~s~~N----~k~~e~d-~kq~~~~v~~sv~alv~~Yl 94 (103)
=.++.++.++....+..+-+.+-|.. .+..--..| -|.+|-+ ..++...+.+|+++.+..|+
T Consensus 63 ~~Yg~~a~~~~l~~l~~~p~ll~~~~-~~~pl~~v~~~~~~~~~eRsLlndl~~i~a~~l~~~~a~~~ 129 (129)
T PF14256_consen 63 LIYGAIALVFGLPALLYAPRLLWWAL-LFLPLFAVNLYFAKRKRERSLLNDLAAIAAFSLMGPAAYYL 129 (129)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHhcCchhHHHhHHHHHHHHHHHHHHHhC
Confidence 46788999999999998887776654 333333333 2333422 23466778899999998885
No 7
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=62.61 E-value=9.5 Score=26.10 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034141 39 VIFGLAGVMFRYKLCSWLAIICCAQSLAN 67 (103)
Q Consensus 39 ~~l~m~am~mRnK~~aW~al~~s~~s~~N 67 (103)
=+=.|.-.++||| ||+-++-++.|++.
T Consensus 57 k~k~~~~FV~RNk--~W~T~~S~~tS~is 83 (100)
T PF06363_consen 57 KMKSMLSFVERNK--AWFTVVSAVTSFIS 83 (100)
T ss_pred HHHHHHHHHHHcc--hHhhHHHHHHHHHH
Confidence 3667888889999 67666666666553
No 8
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=55.86 E-value=45 Score=21.98 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcchhh--HHHHHHHHHHHHHHHhcCCCC
Q 034141 52 LCSWLAIICCAQSLANMRNMETDLKQ--ISMAMMFALMGLVTNYLGPAR 98 (103)
Q Consensus 52 ~~aW~al~~s~~s~~N~k~~e~d~kq--~~~~v~~sv~alv~~Yl~~~~ 98 (103)
.|+-.++++++--++- | + ...+ .+-.+.|++.|++..|++-|-
T Consensus 5 i~g~Iai~~~iR~~~~-~--~-r~~KL~yLnv~~F~iaalIaL~i~~P~ 49 (78)
T PF09882_consen 5 IIGIIAILMAIRIFLT-K--S-RARKLLYLNVINFAIAALIALYIKSPM 49 (78)
T ss_pred HHHHHHHHHHHHHHHh-H--h-HHHhhhHHHHHHHHHHHHHHHHhCCcH
Confidence 3555677777777761 2 2 3344 455667999999999998764
No 9
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=43.80 E-value=1.6e+02 Score=23.19 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCcchhhHHHHHHHHHHHHHHHhc
Q 034141 35 GFIAVIFGLAGVMFRYKLCSWLAIICCAQSLAN--MRNMETDLKQISMAMMFALMGLVTNYL 94 (103)
Q Consensus 35 s~l~~~l~m~am~mRnK~~aW~al~~s~~s~~N--~k~~e~d~kq~~~~v~~sv~alv~~Yl 94 (103)
..+...++.+....=|..+.+.+++...-.+.. +|... ...|.+.++.++ .+.+++|.
T Consensus 90 ~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR~t-~~~~~~lG~~~g-~~~l~g~~ 149 (286)
T PRK12895 90 TIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYT-AWRHIYMGSIIG-LGVLAGYL 149 (286)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCc-cccHHHHHHHHH-hHHHHHHH
Confidence 333344445555556788877766654433332 35433 567777888888 57777765
No 10
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=40.89 E-value=45 Score=18.65 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=15.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHh
Q 034141 72 ETDLKQISMAMMFALMGLVTNY 93 (103)
Q Consensus 72 e~d~kq~~~~v~~sv~alv~~Y 93 (103)
|.+.......++.+.+.|++.|
T Consensus 4 D~qL~~lan~lG~~~~~LIVlY 25 (35)
T PF10215_consen 4 DVQLYTLANFLGVAAMVLIVLY 25 (35)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445667888899999988
No 11
>COG3312 AtpI F0F1-type ATP synthase, subunit I [Energy production and conversion]
Probab=36.22 E-value=93 Score=22.29 Aligned_cols=38 Identities=16% Similarity=0.068 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 034141 33 YSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSLANMRN 70 (103)
Q Consensus 33 ~~s~l~~~l~m~am~mRnK~~aW~al~~s~~s~~N~k~ 70 (103)
....++-+.|..+.++-|=...|++..+.-|.+++.+.
T Consensus 35 ~~~~vSal~Ggla~~LP~~~F~~~af~f~~~~f~~~~~ 72 (128)
T COG3312 35 PQWGVSALLGGLAAFLPNCLFVLFAFRFRGQTFAKGRV 72 (128)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHHHHHccCcHHHHHH
Confidence 45567778899999999999999999999999998765
No 12
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=34.67 E-value=2.1e+02 Score=21.90 Aligned_cols=52 Identities=10% Similarity=0.222 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhcCCCCcchhhHHHHHHHHHHHHHHHhc
Q 034141 32 DYSGFIAVIFGLAGVMF------RYKLCSWLAIICCAQSLANMRNMETDLKQISMAMMFALMGLVTNYL 94 (103)
Q Consensus 32 D~~s~l~~~l~m~am~m------RnK~~aW~al~~s~~s~~N~k~~e~d~kq~~~~v~~sv~alv~~Yl 94 (103)
+..+..+-.+|-.|+-| |+|++.++-+=|.+..|+|.. .+..++.|++.+|+
T Consensus 180 ~gl~vagg~LPAvGfAmll~~~~~k~~~~ff~~GF~l~~yl~l~-----------~~~iai~g~~iA~i 237 (238)
T PF03609_consen 180 NGLNVAGGMLPAVGFAMLLKMMWKKKYIPFFFLGFVLAAYLGLS-----------TLAIAIIGAAIAYI 237 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHCCc-----------HHHHHHHHHHHHHh
Confidence 45666677777665443 778998988889999998433 45567777777764
No 13
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=33.68 E-value=1e+02 Score=17.91 Aligned_cols=57 Identities=11% Similarity=0.013 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhHHHHHHHHHHHHHHH
Q 034141 36 FIAVIFGLAGVMFRYKLCSWLAIICCAQSLANMRNMETDLKQISMAMMFALMGLVTN 92 (103)
Q Consensus 36 ~l~~~l~m~am~mRnK~~aW~al~~s~~s~~N~k~~e~d~kq~~~~v~~sv~alv~~ 92 (103)
++....|..+...=.-+++|..++.++..+.+.-.+..+.+.....+..++..++.+
T Consensus 11 i~~l~~p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~~G 67 (72)
T PF03729_consen 11 ILLLFNPDASLAALAIILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIVLG 67 (72)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 333444444444444556666666666666553222223333344444555544443
No 14
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=33.26 E-value=2.2e+02 Score=21.75 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CC---CcchhhHHHHHHHHHHHHHHHhc
Q 034141 49 RYKLCSWLAIICCAQSLANMR-NM---ETDLKQISMAMMFALMGLVTNYL 94 (103)
Q Consensus 49 RnK~~aW~al~~s~~s~~N~k-~~---e~d~kq~~~~v~~sv~alv~~Yl 94 (103)
.+.++.|.++++.+.+++=.. .. --...+...++.++...++.+|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~ 160 (293)
T PRK06080 111 SGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYY 160 (293)
T ss_pred HhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 566777777776655554321 11 11234556666666666655443
No 15
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=33.04 E-value=41 Score=22.54 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 034141 78 ISMAMMFALMGLVTNYLG 95 (103)
Q Consensus 78 ~~~~v~~sv~alv~~Yl~ 95 (103)
++|.+++..++++++|+.
T Consensus 38 ~iM~~Gl~a~~~c~gYi~ 55 (86)
T PF14937_consen 38 PIMAFGLIAITLCVGYIA 55 (86)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 689999999999999974
No 16
>PF12359 DUF3645: Protein of unknown function (DUF3645) ; InterPro: IPR022105 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a conserved HPD sequence motif.
Probab=31.26 E-value=28 Score=19.48 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=13.4
Q ss_pred CCCCCCCccccccCCCC
Q 034141 9 DPRQPSAAKPYVSTAVA 25 (103)
Q Consensus 9 DpRRpdlivpy~~p~~~ 25 (103)
|++|--++|||..-..+
T Consensus 2 ~~~R~~lAVPf~akd~P 18 (34)
T PF12359_consen 2 DPSRTRLAVPFRAKDVP 18 (34)
T ss_pred CcCCceeeeeeecCCCC
Confidence 67888899999985443
No 17
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=31.00 E-value=46 Score=24.67 Aligned_cols=17 Identities=41% Similarity=0.727 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 034141 78 ISMAMMFALMGLVTNYL 94 (103)
Q Consensus 78 ~~~~v~~sv~alv~~Yl 94 (103)
|++.|.++++|-|.+|+
T Consensus 120 Ivsav~valvGAvsSyi 136 (169)
T PF12301_consen 120 IVSAVVVALVGAVSSYI 136 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999999997
No 18
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=29.50 E-value=1.8e+02 Score=19.46 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 034141 77 QISMAMMFALMGLVTN 92 (103)
Q Consensus 77 q~~~~v~~sv~alv~~ 92 (103)
.+..+|++.+.|++++
T Consensus 68 N~~IGFg~~i~G~lmt 83 (87)
T PRK00159 68 NYAIGFALMITGLLMT 83 (87)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 3678888888888875
No 19
>COG4743 Predicted membrane protein [Function unknown]
Probab=28.61 E-value=43 Score=26.93 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC
Q 034141 78 ISMAMMFALMGLVTNYLGPARPGT 101 (103)
Q Consensus 78 ~~~~v~~sv~alv~~Yl~~~~p~~ 101 (103)
++..+.++.+|+..--..+|.||-
T Consensus 176 iLii~ivaslgvl~Yvi~nP~pgE 199 (316)
T COG4743 176 ILIIAIVASLGVLAYVITNPKPGE 199 (316)
T ss_pred hhHHHHHHHhhheEEEecCCCCcc
Confidence 444555555555443448898874
No 20
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=28.37 E-value=2.5e+02 Score=21.25 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhcCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q 034141 56 LAIICCAQSLANMRNMETDLKQISMAMMFALMGLVTNYLGP 96 (103)
Q Consensus 56 ~al~~s~~s~~N~k~~e~d~kq~~~~v~~sv~alv~~Yl~~ 96 (103)
++++++..+|+ +...-|..|.++.++.-+.|-.+.|+++
T Consensus 32 At~i~l~~~w~--~~rkv~km~l~s~~~v~vFG~lTl~f~~ 70 (180)
T COG2917 32 ATVIQLAILWI--KYRKVEKMQLISGVVVVVFGGLTLIFHN 70 (180)
T ss_pred HHHHHHHHHHH--HHhhhHHHHHHHHHHHHHhchhHhhccC
Confidence 44556666676 5555677788888888888888888875
No 21
>PF01679 Pmp3: Proteolipid membrane potential modulator; InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane
Probab=27.82 E-value=88 Score=18.65 Aligned_cols=32 Identities=9% Similarity=0.189 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhh
Q 034141 35 GFIAVIFGLAGVMFRYK--LCSWLAIICCAQSLA 66 (103)
Q Consensus 35 s~l~~~l~m~am~mRnK--~~aW~al~~s~~s~~ 66 (103)
-+++.++|-+|+++|.. ---|..+++.+-.|+
T Consensus 6 ~ilai~lPPlaV~~~~g~~~~~~inl~Ltl~g~i 39 (51)
T PF01679_consen 6 IILAIFLPPLAVFLKKGCSKDFWINLLLTLLGWI 39 (51)
T ss_pred HHHHHHcccHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 46788999999998764 123777777766664
No 22
>COG3308 Predicted membrane protein [Function unknown]
Probab=27.37 E-value=66 Score=23.04 Aligned_cols=18 Identities=6% Similarity=0.279 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034141 49 RYKLCSWLAIICCAQSLA 66 (103)
Q Consensus 49 RnK~~aW~al~~s~~s~~ 66 (103)
-.|+|||+.+++++.-|.
T Consensus 94 aer~lawaevllS~~~F~ 111 (131)
T COG3308 94 AERILAWAEVLLSIIFFI 111 (131)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 568999998888777664
No 23
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=26.85 E-value=4.3e+02 Score=23.43 Aligned_cols=13 Identities=31% Similarity=0.286 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHh
Q 034141 81 AMMFALMGLVTNY 93 (103)
Q Consensus 81 ~v~~sv~alv~~Y 93 (103)
..+.++.+|+..|
T Consensus 589 ~~l~ai~glf~~Y 601 (636)
T PF05817_consen 589 GGLGAIEGLFFLY 601 (636)
T ss_pred HHHHHHHHHHHHH
Confidence 4456777777776
No 24
>PF10742 DUF2555: Protein of unknown function (DUF2555); InterPro: IPR019678 This entry represents conserved proteins found in Cyanobacteria. The function is not known.
Probab=26.34 E-value=23 Score=22.04 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=9.3
Q ss_pred CCCCCcccccc
Q 034141 11 RQPSAAKPYVS 21 (103)
Q Consensus 11 RRpdlivpy~~ 21 (103)
.||+|+.||.|
T Consensus 45 ~RpeL~~pY~h 55 (57)
T PF10742_consen 45 QRPELVEPYIH 55 (57)
T ss_pred cChhccchhHh
Confidence 58999999976
No 25
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=25.98 E-value=1.6e+02 Score=19.24 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCC
Q 034141 81 AMMFALMGLVTNYLGPARPGT 101 (103)
Q Consensus 81 ~v~~sv~alv~~Yl~~~~p~~ 101 (103)
+..+.+++++=-..+|-.+|.
T Consensus 47 ~~v~~lL~~lGii~DPTT~Gl 67 (78)
T TIGR01598 47 AAITTILAVVGIIMDPTTSGL 67 (78)
T ss_pred HHHHHHHHHHheecCCCCCCC
Confidence 444555555544456666654
No 26
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=25.95 E-value=93 Score=15.88 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 034141 34 SGFIAVIFGLAGVMFRYK 51 (103)
Q Consensus 34 ~s~l~~~l~m~am~mRnK 51 (103)
.+++++.++..++.+|.|
T Consensus 5 stl~ll~~g~~~~~~rrr 22 (26)
T TIGR02595 5 STLLLLLLGLGFLLLRRR 22 (26)
T ss_pred hHHHHHHHHHHHHHHhhc
Confidence 455555555555555544
No 27
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=24.28 E-value=2.3e+02 Score=19.07 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcchhhHHHHHHHHHHHHH
Q 034141 51 KLCSWLAIICCAQSLANMRNMETDLKQISMAMMFALMGLV 90 (103)
Q Consensus 51 K~~aW~al~~s~~s~~N~k~~e~d~kq~~~~v~~sv~alv 90 (103)
.+++=++++=++.=|.++.+.|.|.+..+++...|++-|+
T Consensus 49 aI~aVvglIGai~VY~k~~~Gd~dv~k~i~~w~GaciFli 88 (98)
T PF13572_consen 49 AIGAVVGLIGAIRVYIKWNNGDQDVKKSIMSWFGACIFLI 88 (98)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHH
Confidence 3444455666666677677777787665555444444433
No 28
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=24.22 E-value=2.2e+02 Score=18.86 Aligned_cols=16 Identities=6% Similarity=0.453 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 034141 77 QISMAMMFALMGLVTN 92 (103)
Q Consensus 77 q~~~~v~~sv~alv~~ 92 (103)
.+..+|++.+.|++++
T Consensus 68 N~~IGfg~~~~Gf~mt 83 (87)
T PF06781_consen 68 NLAIGFGLMIVGFLMT 83 (87)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3788888889998875
No 29
>PHA02414 hypothetical protein
Probab=22.18 E-value=1.1e+02 Score=21.21 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=19.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHhc
Q 034141 72 ETDLKQISMAMMFALMGLVTNYL 94 (103)
Q Consensus 72 e~d~kq~~~~v~~sv~alv~~Yl 94 (103)
+...|.+.=.|.|.++|-+++|.
T Consensus 84 d~~KkD~vEkVfmivLGAvvtyV 106 (111)
T PHA02414 84 DTEKKDTVEKVFMIVLGAVVTYV 106 (111)
T ss_pred cchhhHHHHHHHHHHHHHHHHHH
Confidence 33556688899999999999996
No 30
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=21.89 E-value=2.1e+02 Score=21.45 Aligned_cols=16 Identities=6% Similarity=-0.062 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhcCC
Q 034141 55 WLAIICCAQSLANMRN 70 (103)
Q Consensus 55 W~al~~s~~s~~N~k~ 70 (103)
.+.-+.++.+++|-|+
T Consensus 121 Lal~~~~~iyfl~~K~ 136 (194)
T PF11833_consen 121 LALGLGACIYFLNRKE 136 (194)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4555667778998764
No 31
>PHA00724 hypothetical protein
Probab=21.64 E-value=2.5e+02 Score=18.41 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=32.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034141 31 VDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSLAN 67 (103)
Q Consensus 31 ~D~~s~l~~~l~m~am~mRnK~~aW~al~~s~~s~~N 67 (103)
.|..-+++..+|..|+.-||-.+--.+.+.....|+=
T Consensus 6 gdviyilgil~p~lgli~rnyl~nlmgfvmgtigflv 42 (83)
T PHA00724 6 GDVIYILGILIPLLGLIVRNYLVNLMGFVMGTIGFLV 42 (83)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheeE
Confidence 5777789999999999999999988888888888764
No 32
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=21.11 E-value=3.5e+02 Score=20.04 Aligned_cols=42 Identities=21% Similarity=0.466 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhc-----CCCCcc------hhhHHHHHHHHHHHHHHHh
Q 034141 52 LCSWLAIICCAQSLANM-----RNMETD------LKQISMAMMFALMGLVTNY 93 (103)
Q Consensus 52 ~~aW~al~~s~~s~~N~-----k~~e~d------~kq~~~~v~~sv~alv~~Y 93 (103)
...|.++..+--|+-+. |++.+. .|..+.++-+++.|.+.+-
T Consensus 33 il~wvgvlmaylSL~~li~Ly~~~ty~k~~~k~l~kt~~iSF~~avLGiifgI 85 (161)
T PF13042_consen 33 ILSWVGVLMAYLSLYILIDLYCKNTYDKKFSKVLIKTNVISFNFAVLGIIFGI 85 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899998887777652 222211 1335678889999988764
No 33
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=20.51 E-value=3.2e+02 Score=19.37 Aligned_cols=20 Identities=10% Similarity=0.341 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHHhc
Q 034141 75 LKQISMAMMFALMGLVTNYL 94 (103)
Q Consensus 75 ~kq~~~~v~~sv~alv~~Yl 94 (103)
..+.-.++.+-+.+++..||
T Consensus 112 ~~~~~~g~~lp~vaii~~~L 131 (149)
T PF14126_consen 112 TFSFGIGFFLPLVAIIFLWL 131 (149)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 33445677778888887776
No 34
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.28 E-value=3.9e+02 Score=20.21 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=26.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034141 30 PVDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSL 65 (103)
Q Consensus 30 ~~D~~s~l~~~l~m~am~mRnK~~aW~al~~s~~s~ 65 (103)
-.|..+.+=..+|+|.++. |.+|.-+..+.++.
T Consensus 92 ~vDllGtifFLlPfc~l~i---y~~~~~~~~S~~~G 124 (182)
T COG4665 92 WVDLLGTIFFLLPFCLLVI---YLSWPYVALSWAIG 124 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHccHHHHHHHHhc
Confidence 4688888889999999886 77888777776665
Done!