Query 034141
Match_columns 103
No_of_seqs 101 out of 131
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:25:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rkl_A Dolichyl-diphosphooligo 41.7 38 0.0013 18.3 3.5 22 72-93 4-25 (36)
2 2lat_A Dolichyl-diphosphooligo 34.8 40 0.0014 18.4 2.8 22 72-93 4-25 (37)
3 1p58_A Major envelope protein 13.5 1.4E+02 0.0047 24.7 3.2 17 79-95 474-490 (495)
4 3ha4_A MIX1; TPR-like, helix-t 13.4 43 0.0015 23.1 0.1 7 8-14 27-33 (154)
5 4b4a_A TATC, SEC-independent p 12.6 4.2E+02 0.014 19.3 7.2 50 45-94 60-120 (249)
6 1tm9_A GI3844938, hypothetical 11.6 3E+02 0.01 18.4 3.9 40 56-95 94-135 (137)
7 3o71_B Peptide of deleted in c 10.1 1.2E+02 0.0043 15.2 1.2 13 5-17 4-16 (27)
8 3mp7_B Preprotein translocase 10.1 2.6E+02 0.0088 16.4 2.9 22 69-90 24-47 (61)
9 3arc_H Photosystem II reaction 8.9 2.5E+02 0.0085 17.0 2.5 17 78-94 28-44 (65)
10 1rh5_B Preprotein translocase 8.7 2.1E+02 0.0072 17.5 2.1 22 69-90 28-51 (74)
No 1
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=41.73 E-value=38 Score=18.33 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=16.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHh
Q 034141 72 ETDLKQISMAMMFALMGLVTNY 93 (103)
Q Consensus 72 e~d~kq~~~~v~~sv~alv~~Y 93 (103)
|.+.......++.+.+.|++.|
T Consensus 4 D~qL~~lan~lG~~~~~LIvlY 25 (36)
T 1rkl_A 4 DEQLNSLAITFGIVMMTLIVIY 25 (36)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677888899999988
No 2
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=34.77 E-value=40 Score=18.36 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=15.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHh
Q 034141 72 ETDLKQISMAMMFALMGLVTNY 93 (103)
Q Consensus 72 e~d~kq~~~~v~~sv~alv~~Y 93 (103)
|.+.......++.+.+.|++.|
T Consensus 4 D~qL~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 4 DVQLAIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667888888999887
No 3
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=13.54 E-value=1.4e+02 Score=24.72 Aligned_cols=17 Identities=47% Similarity=0.876 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhcC
Q 034141 79 SMAMMFALMGLVTNYLG 95 (103)
Q Consensus 79 ~~~v~~sv~alv~~Yl~ 95 (103)
.+++.|-++|.+..||.
T Consensus 474 t~s~~~l~~G~ill~l~ 490 (495)
T 1p58_A 474 SLSVSLVLVGIVTLYLG 490 (495)
T ss_pred hHHHHHHHHHHHhheee
Confidence 46666777777777774
No 4
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=13.37 E-value=43 Score=23.10 Aligned_cols=7 Identities=71% Similarity=1.441 Sum_probs=5.8
Q ss_pred CCCCCCC
Q 034141 8 NDPRQPS 14 (103)
Q Consensus 8 ~DpRRpd 14 (103)
+|||||-
T Consensus 27 ndprrpp 33 (154)
T 3ha4_A 27 NDPRRPP 33 (154)
T ss_dssp HCTTCCC
T ss_pred CCCCCCC
Confidence 6999984
No 5
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=12.65 E-value=4.2e+02 Score=19.29 Aligned_cols=50 Identities=10% Similarity=0.208 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---------cCCCCcch-hh-HHHHHHHHHHHHHHHhc
Q 034141 45 GVMFRYKLCSWLAIICCAQSLAN---------MRNMETDL-KQ-ISMAMMFALMGLVTNYL 94 (103)
Q Consensus 45 am~mRnK~~aW~al~~s~~s~~N---------~k~~e~d~-kq-~~~~v~~sv~alv~~Yl 94 (103)
+.+++-|...|+++++++-.++- ..++|-.. .. ...++.+-+.|+..+|.
T Consensus 60 ~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf 120 (249)
T 4b4a_A 60 PLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYF 120 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888766655 12334111 11 45566677888888884
No 6
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=11.59 E-value=3e+02 Score=18.36 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhc--CCCCcchhhHHHHHHHHHHHHHHHhcC
Q 034141 56 LAIICCAQSLANM--RNMETDLKQISMAMMFALMGLVTNYLG 95 (103)
Q Consensus 56 ~al~~s~~s~~N~--k~~e~d~kq~~~~v~~sv~alv~~Yl~ 95 (103)
.|.+||+.+|+-- =-++.+.||++-...=++--=+.-||.
T Consensus 94 ~aiifci~yflyhf~fl~d~nkkq~~k~a~e~ia~~iadyln 135 (137)
T 1tm9_A 94 PAIIFCVIYFLYHFGFLKDNNKKQIIKKAYETIADNIADYLN 135 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCCCCCSSCHHHHHHHHHHHTHHHHT
T ss_pred ceehhhHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999888741 123557788665554444444555553
No 7
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=10.13 E-value=1.2e+02 Score=15.22 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCcc
Q 034141 5 NNSNDPRQPSAAK 17 (103)
Q Consensus 5 ~~~~DpRRpdliv 17 (103)
.+++|.+-|||-+
T Consensus 4 ~~~kDlkppdlwi 16 (27)
T 3o71_B 4 GSQKDLRPPDLWI 16 (27)
T ss_pred CccCCCCCcceee
Confidence 3568999998866
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=10.08 E-value=2.6e+02 Score=16.36 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=13.0
Q ss_pred CCCCcchhhH--HHHHHHHHHHHH
Q 034141 69 RNMETDLKQI--SMAMMFALMGLV 90 (103)
Q Consensus 69 k~~e~d~kq~--~~~v~~sv~alv 90 (103)
|++..+.+++ ...+++.++|++
T Consensus 24 KPd~~Ef~~iak~~~iG~~i~G~i 47 (61)
T 3mp7_B 24 KPNWATYKRAAKITGLGIILIGLI 47 (61)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455553 557777777764
No 9
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=8.89 E-value=2.5e+02 Score=16.95 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 034141 78 ISMAMMFALMGLVTNYL 94 (103)
Q Consensus 78 ~~~~v~~sv~alv~~Yl 94 (103)
++|++.|++.+++...+
T Consensus 28 plMgv~m~Lf~vFl~ii 44 (65)
T 3arc_H 28 PLMAVFMGLFLVFLLII 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 68999888888876653
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=8.68 E-value=2.1e+02 Score=17.46 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=12.9
Q ss_pred CCCCcchhh--HHHHHHHHHHHHH
Q 034141 69 RNMETDLKQ--ISMAMMFALMGLV 90 (103)
Q Consensus 69 k~~e~d~kq--~~~~v~~sv~alv 90 (103)
|.+..+.++ ....++|.++|++
T Consensus 28 KPdr~EF~~iak~~~iG~~imG~I 51 (74)
T 1rh5_B 28 KPTKDEYLAVAKVTALGISLLGII 51 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 443444555 3567777777764
Done!