Query 034141
Match_columns 103
No_of_seqs 101 out of 131
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 17:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034141.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034141hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tm9a_ a.225.1.1 (A:) Hypothe 11.6 1.4E+02 0.01 18.4 3.9 40 56-95 94-135 (137)
2 d2axth1 f.23.33.1 (H:2-65) Pho 9.8 1E+02 0.0075 17.1 2.5 17 78-94 28-44 (64)
3 d1rh5b_ f.23.28.1 (B:) Preprot 9.0 99 0.0072 16.7 2.1 18 73-90 21-40 (56)
4 d1rkla_ f.23.30.1 (A:) Oligosa 8.5 1.3E+02 0.0097 14.6 3.5 20 74-93 6-25 (36)
5 d1v54d_ f.23.1.1 (D:) Mitochon 7.0 1.8E+02 0.013 18.3 3.1 50 50-101 52-107 (144)
6 d2e74h1 f.23.27.1 (H:3-29) Pet 6.1 1.6E+02 0.012 13.4 1.9 10 52-61 3-12 (27)
7 d1c4ea_ g.3.4.1 (A:) Gurmarin, 5.3 1.1E+02 0.0084 14.7 1.0 12 10-21 4-15 (35)
8 d1m56d_ f.23.8.1 (D:) Bacteria 4.9 2.2E+02 0.016 14.4 2.0 11 51-61 21-31 (42)
9 d3cx5e2 f.23.12.1 (E:31-86) Ir 4.8 2.8E+02 0.02 14.7 3.4 21 73-93 19-39 (56)
10 d4sgbi_ g.69.1.1 (I:) Plant ch 4.4 2.2E+02 0.016 14.9 1.9 16 7-22 27-42 (51)
No 1
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=11.59 E-value=1.4e+02 Score=18.36 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhc--CCCCcchhhHHHHHHHHHHHHHHHhcC
Q 034141 56 LAIICCAQSLANM--RNMETDLKQISMAMMFALMGLVTNYLG 95 (103)
Q Consensus 56 ~al~~s~~s~~N~--k~~e~d~kq~~~~v~~sv~alv~~Yl~ 95 (103)
.|.+||+.+|+-- =-++.+.||++-...=++--=+.-||.
T Consensus 94 ~aiifci~yflyhf~fl~d~nkkq~~k~a~e~ia~~iadyln 135 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKDNNKKQIIKKAYETIADNIADYLN 135 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCCCCCSSCHHHHHHHHHHHTHHHHT
T ss_pred ceehhhHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999888741 123557788665554444444555553
No 2
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.78 E-value=1e+02 Score=17.13 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 034141 78 ISMAMMFALMGLVTNYL 94 (103)
Q Consensus 78 ~~~~v~~sv~alv~~Yl 94 (103)
++|++.|++.+++...+
T Consensus 28 plMgv~m~Lf~vfl~ii 44 (64)
T d2axth1 28 PLMAVFMGLFLVFLLII 44 (64)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999888888876654
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.02 E-value=99 Score=16.72 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=12.0
Q ss_pred cchhh--HHHHHHHHHHHHH
Q 034141 73 TDLKQ--ISMAMMFALMGLV 90 (103)
Q Consensus 73 ~d~kq--~~~~v~~sv~alv 90 (103)
.+.++ ...+++|.++|++
T Consensus 21 ~Ef~~ia~v~~iG~~i~G~I 40 (56)
T d1rh5b_ 21 DEYLAVAKVTALGISLLGII 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555 4667888888764
No 4
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.49 E-value=1.3e+02 Score=14.63 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=14.5
Q ss_pred chhhHHHHHHHHHHHHHHHh
Q 034141 74 DLKQISMAMMFALMGLVTNY 93 (103)
Q Consensus 74 d~kq~~~~v~~sv~alv~~Y 93 (103)
....+...|+.-.|.|++-|
T Consensus 6 qln~~~i~fgi~mmtliviy 25 (36)
T d1rkla_ 6 QLNSLAITFGIVMMTLIVIY 25 (36)
T ss_dssp GGGHHHHHHHHHHHHHHHHH
T ss_pred hcCcEEeehhHHHHHHHHHH
Confidence 44456677777888888887
No 5
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.00 E-value=1.8e+02 Score=18.34 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCcchhhHH------HHHHHHHHHHHHHhcCCCCCCC
Q 034141 50 YKLCSWLAIICCAQSLANMRNMETDLKQIS------MAMMFALMGLVTNYLGPARPGT 101 (103)
Q Consensus 50 nK~~aW~al~~s~~s~~N~k~~e~d~kq~~------~~v~~sv~alv~~Yl~~~~p~~ 101 (103)
=|-.+|=+-| +++++-+....++-|.++ .++.+.+..+.-.|+-+|.|-|
T Consensus 52 EKkalYrisF--~~t~ae~~~p~gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~~P~T 107 (144)
T d1v54d_ 52 EKVELYRLKF--KESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHT 107 (144)
T ss_dssp HHHHHHHHHC--SSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGG
T ss_pred HHHHHHHHHh--ccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3555555544 344543433344545532 2233333444445666777754
No 6
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.06 E-value=1.6e+02 Score=13.38 Aligned_cols=10 Identities=20% Similarity=0.823 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 034141 52 LCSWLAIICC 61 (103)
Q Consensus 52 ~~aW~al~~s 61 (103)
.++|.+++.-
T Consensus 3 ~lgwv~llvv 12 (27)
T d2e74h1 3 VLGWVALLVV 12 (27)
T ss_dssp HHHHHHHHHH
T ss_pred chhHhHHHHH
Confidence 3577776543
No 7
>d1c4ea_ g.3.4.1 (A:) Gurmarin, a sweet taste-suppressing polypeptide {Gymnema sylvestre [TaxId: 4068]}
Probab=5.34 E-value=1.1e+02 Score=14.67 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=9.0
Q ss_pred CCCCCCcccccc
Q 034141 10 PRQPSAAKPYVS 21 (103)
Q Consensus 10 pRRpdlivpy~~ 21 (103)
.+..++++||-.
T Consensus 4 vkkdelcipyyl 15 (35)
T d1c4ea_ 4 VKKDELCIPYYL 15 (35)
T ss_dssp CCTTCBCCTTTC
T ss_pred ccccceecchhh
Confidence 466788999865
No 8
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.95 E-value=2.2e+02 Score=14.42 Aligned_cols=11 Identities=18% Similarity=0.833 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q 034141 51 KLCSWLAIICC 61 (103)
Q Consensus 51 K~~aW~al~~s 61 (103)
||.-|.++++.
T Consensus 21 k~~t~~~i~~i 31 (42)
T d1m56d_ 21 RMVTWAAVVIV 31 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66667665543
No 9
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.79 E-value=2.8e+02 Score=14.69 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=15.3
Q ss_pred cchhhHHHHHHHHHHHHHHHh
Q 034141 73 TDLKQISMAMMFALMGLVTNY 93 (103)
Q Consensus 73 ~d~kq~~~~v~~sv~alv~~Y 93 (103)
.+..+.++=+|.+-+|++..|
T Consensus 19 ~~~~r~fsY~mvGs~g~~~a~ 39 (56)
T d3cx5e2 19 ADKGRSYAYFMVGAMGLLSSA 39 (56)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceEEEEeeehhHHHHHH
Confidence 345566777888888888776
No 10
>d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato tuber (Solanum tuberosum) [TaxId: 4113]}
Probab=4.42 E-value=2.2e+02 Score=14.94 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=11.0
Q ss_pred CCCCCCCCCccccccC
Q 034141 7 SNDPRQPSAAKPYVST 22 (103)
Q Consensus 7 ~~DpRRpdlivpy~~p 22 (103)
.+|||.|..+.+.-.|
T Consensus 27 eSdp~npkaCp~nCD~ 42 (51)
T d4sgbi_ 27 QSDPKKPKACPLNCDP 42 (51)
T ss_dssp CBCTTSCCCEECCBCT
T ss_pred CCCCCCCCcCCccCCC
Confidence 3799999777654443
Done!