Query 034143
Match_columns 103
No_of_seqs 109 out of 122
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 17:27:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034143.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034143hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n11a_ d.211.1.1 (A:) Ankyrin 6.6 78 0.0057 20.8 1.1 10 65-74 1-10 (408)
2 d1ixva_ d.211.1.1 (A:) 26S pro 6.4 88 0.0064 18.8 1.2 9 66-74 2-10 (229)
3 d1mkha_ b.40.4.4 (A:) C-termin 6.1 65 0.0047 19.6 0.4 13 87-99 73-85 (107)
4 d1xa6a3 g.49.1.1 (A:209-270) B 5.8 73 0.0053 17.2 0.4 14 87-100 25-38 (62)
5 d1jjcb3 b.40.4.4 (B:39-151) Do 5.1 65 0.0048 20.2 -0.1 13 87-99 70-82 (113)
6 d1fl0a_ b.40.4.4 (A:) EMAP II 4.8 76 0.0055 20.6 0.1 13 87-99 69-81 (164)
7 d1k1aa_ d.211.1.1 (A:) bcl-3 { 4.3 1.4E+02 0.01 16.9 1.0 10 65-74 4-13 (228)
8 d1ntga_ b.40.4.4 (A:) C-termin 3.9 97 0.0071 20.2 0.1 13 87-99 72-84 (171)
9 d1tbna_ g.49.1.1 (A:) Protein 3.9 1.3E+02 0.0098 16.2 0.7 14 87-100 29-42 (66)
10 d1pxfa_ b.40.4.4 (A:) Structur 3.8 1.4E+02 0.01 18.1 0.8 12 88-99 75-86 (111)
No 1
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.58 E-value=78 Score=20.80 Aligned_cols=10 Identities=40% Similarity=0.514 Sum_probs=6.5
Q ss_pred cchhHHHHHH
Q 034143 65 LLPLHSVVAA 74 (103)
Q Consensus 65 llPLHsAvAs 74 (103)
|.|||.|+..
T Consensus 1 ~TpL~~Aa~~ 10 (408)
T d1n11a_ 1 LTPLHVASFM 10 (408)
T ss_dssp CCHHHHHHHH
T ss_pred CChHHHHHHC
Confidence 4577777653
No 2
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.40 E-value=88 Score=18.85 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=6.2
Q ss_pred chhHHHHHH
Q 034143 66 LPLHSVVAA 74 (103)
Q Consensus 66 lPLHsAvAs 74 (103)
.|||.|+..
T Consensus 2 ~pLh~A~~~ 10 (229)
T d1ixva_ 2 YPLHQACME 10 (229)
T ss_dssp CHHHHHHHH
T ss_pred HhHHHHHHc
Confidence 477777765
No 3
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=6.11 E-value=65 Score=19.61 Aligned_cols=13 Identities=31% Similarity=0.105 Sum_probs=9.9
Q ss_pred ccccccCCccccc
Q 034143 87 SCRALSQGTLCCT 99 (103)
Q Consensus 87 ~~~~Lsqg~~~~~ 99 (103)
--|..|||++|+.
T Consensus 73 irGv~SeGMl~s~ 85 (107)
T d1mkha_ 73 LRGIGSQGMLLAA 85 (107)
T ss_dssp C-CCEECCCBCEE
T ss_pred CCCccCCEEEEEe
Confidence 3578999999974
No 4
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.78 E-value=73 Score=17.18 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=10.2
Q ss_pred ccccccCCcccccC
Q 034143 87 SCRALSQGTLCCTS 100 (103)
Q Consensus 87 ~~~~Lsqg~~~~~~ 100 (103)
-|+...||..|..+
T Consensus 25 i~g~~~~g~~C~~C 38 (62)
T d1xa6a3 25 MWGLIAQGVRCSDC 38 (62)
T ss_dssp CCTTTTCEECCSSS
T ss_pred ccccccCeEEcCCC
Confidence 46777788888765
No 5
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=5.11 E-value=65 Score=20.18 Aligned_cols=13 Identities=15% Similarity=-0.105 Sum_probs=9.9
Q ss_pred ccccccCCccccc
Q 034143 87 SCRALSQGTLCCT 99 (103)
Q Consensus 87 ~~~~Lsqg~~~~~ 99 (103)
--+..|||++|+.
T Consensus 70 irGv~S~GMlcS~ 82 (113)
T d1jjcb3 70 IQGVRSFGMALSP 82 (113)
T ss_dssp ETTEEEESEECCH
T ss_pred ecCEeeeeEEecH
Confidence 3468899999874
No 6
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.81 E-value=76 Score=20.63 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=10.3
Q ss_pred ccccccCCccccc
Q 034143 87 SCRALSQGTLCCT 99 (103)
Q Consensus 87 ~~~~Lsqg~~~~~ 99 (103)
--+..|||++|+.
T Consensus 69 irGv~SeGMllsa 81 (164)
T d1fl0a_ 69 MRGVLSQAMVMCA 81 (164)
T ss_dssp SSSCEECCEECEE
T ss_pred cCceEcceEEEee
Confidence 4578899998874
No 7
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.26 E-value=1.4e+02 Score=16.89 Aligned_cols=10 Identities=40% Similarity=0.464 Sum_probs=7.4
Q ss_pred cchhHHHHHH
Q 034143 65 LLPLHSVVAA 74 (103)
Q Consensus 65 llPLHsAvAs 74 (103)
..|||.|+..
T Consensus 4 ~TpLh~A~~~ 13 (228)
T d1k1aa_ 4 DTPLHIAVVQ 13 (228)
T ss_dssp CCHHHHHHHT
T ss_pred ccHHHHHHHc
Confidence 4689988754
No 8
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.95 E-value=97 Score=20.24 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=10.2
Q ss_pred ccccccCCccccc
Q 034143 87 SCRALSQGTLCCT 99 (103)
Q Consensus 87 ~~~~Lsqg~~~~~ 99 (103)
--|..|||++|+.
T Consensus 72 irGv~SeGMl~s~ 84 (171)
T d1ntga_ 72 MRGVESQGMLLCA 84 (171)
T ss_dssp ETTEEECCEECEE
T ss_pred cCccccceEEeec
Confidence 4578899998874
No 9
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}
Probab=3.86 E-value=1.3e+02 Score=16.16 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=9.1
Q ss_pred ccccccCCcccccC
Q 034143 87 SCRALSQGTLCCTS 100 (103)
Q Consensus 87 ~~~~Lsqg~~~~~~ 100 (103)
-|+..-||+.|..+
T Consensus 29 i~g~~~~g~~C~~C 42 (66)
T d1tbna_ 29 LYGLVHQGMKCSCC 42 (66)
T ss_dssp CCTTSSSCEEETTT
T ss_pred ccCcccCccccCcc
Confidence 46666677777654
No 10
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]}
Probab=3.77 E-value=1.4e+02 Score=18.07 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=9.6
Q ss_pred cccccCCccccc
Q 034143 88 CRALSQGTLCCT 99 (103)
Q Consensus 88 ~~~Lsqg~~~~~ 99 (103)
-|..|||+.|+.
T Consensus 75 rGv~SeGMil~~ 86 (111)
T d1pxfa_ 75 RGETSECMLLCA 86 (111)
T ss_dssp TTBCCCCCBCEE
T ss_pred CCeeceEEEEEe
Confidence 488999998764
Done!