Query 034146
Match_columns 103
No_of_seqs 109 out of 122
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 17:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mkh_A Metrs;, C-terminal doma 5.8 1.5E+02 0.0051 19.5 0.4 14 86-99 72-85 (107)
2 1pyb_A Methionyl-tRNA syntheta 5.7 1.5E+02 0.0051 19.6 0.4 14 86-99 76-89 (111)
3 1ptq_A Protein kinase C delta 5.6 1.4E+02 0.0049 16.1 0.2 14 87-100 21-34 (50)
4 1gd7_A CSAA protein; oligonucl 5.4 1.4E+02 0.0049 19.7 0.1 14 86-99 73-86 (109)
5 2enz_A NPKC-theta, protein kin 5.1 2E+02 0.0068 16.7 0.6 14 87-100 33-46 (65)
6 2cwp_A Metrs related protein; 5.1 1.6E+02 0.0055 19.5 0.2 14 86-99 76-89 (112)
7 3g48_A Chaperone CSAA; structu 5.0 1.5E+02 0.0053 19.7 0.1 14 86-99 76-89 (112)
8 2nzh_A Protein CSAA; beta barr 4.7 1.7E+02 0.0058 19.5 0.1 14 86-99 77-90 (113)
9 2q2i_A AGR_C_4014P, secretion 4.6 1.7E+02 0.0059 19.5 0.1 14 86-99 80-93 (116)
10 2q2h_A AGR_C_4014P, secretion 4.0 2E+02 0.007 19.7 0.1 14 86-99 95-108 (131)
No 1
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=5.76 E-value=1.5e+02 Score=19.49 Aligned_cols=14 Identities=36% Similarity=0.173 Sum_probs=10.4
Q ss_pred cccccccCCccccc
Q 034146 86 KSCRALSQGTLCCT 99 (103)
Q Consensus 86 r~~~~Lsqg~~~~~ 99 (103)
.-.+..|||++|+.
T Consensus 72 klrGv~S~GMl~s~ 85 (107)
T 1mkh_A 72 KLRGIGSQGMLLAA 85 (107)
T ss_dssp EC-CCEECCCBCEE
T ss_pred EEcCeeeccEEEEc
Confidence 34578899999985
No 2
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=5.75 E-value=1.5e+02 Score=19.61 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=11.1
Q ss_pred cccccccCCccccc
Q 034146 86 KSCRALSQGTLCCT 99 (103)
Q Consensus 86 r~~~~Lsqg~~~~~ 99 (103)
.-.+..|||++|+.
T Consensus 76 klrGv~S~GMl~sa 89 (111)
T 1pyb_A 76 KIFGIESQGMILAA 89 (111)
T ss_dssp CTTSCCBSSEECEE
T ss_pred EEccEeeccEEEEe
Confidence 45578899999985
No 3
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=5.65 E-value=1.4e+02 Score=16.14 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=9.6
Q ss_pred ccccccCCcccccC
Q 034146 87 SCRALSQGTLCCTS 100 (103)
Q Consensus 87 ~~~~Lsqg~~~~~~ 100 (103)
-||..-||..|..+
T Consensus 21 l~g~~~qg~~C~~C 34 (50)
T 1ptq_A 21 LWGLVKQGLKCEDC 34 (50)
T ss_dssp CCSSSSCEEEETTT
T ss_pred eeccCCccCEeCCC
Confidence 46667788877654
No 4
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=5.36 E-value=1.4e+02 Score=19.69 Aligned_cols=14 Identities=14% Similarity=0.014 Sum_probs=11.1
Q ss_pred cccccccCCccccc
Q 034146 86 KSCRALSQGTLCCT 99 (103)
Q Consensus 86 r~~~~Lsqg~~~~~ 99 (103)
.-.+..|||+.|+.
T Consensus 73 klrGv~S~GMl~sa 86 (109)
T 1gd7_A 73 RVAGFLSEVLVLGV 86 (109)
T ss_dssp EETTEEECSEECEE
T ss_pred EeccEeecCEEEEe
Confidence 34578899999985
No 5
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=5.10 E-value=2e+02 Score=16.74 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=9.7
Q ss_pred ccccccCCcccccC
Q 034146 87 SCRALSQGTLCCTS 100 (103)
Q Consensus 87 ~~~~Lsqg~~~~~~ 100 (103)
-|+..-||+.|..+
T Consensus 33 l~Gl~~qg~~C~~C 46 (65)
T 2enz_A 33 LWGLARQGLKCDAC 46 (65)
T ss_dssp CCCSSSCSEEESSS
T ss_pred heecCCcccccCCC
Confidence 46777788877654
No 6
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=5.07 E-value=1.6e+02 Score=19.54 Aligned_cols=14 Identities=36% Similarity=0.233 Sum_probs=11.0
Q ss_pred cccccccCCccccc
Q 034146 86 KSCRALSQGTLCCT 99 (103)
Q Consensus 86 r~~~~Lsqg~~~~~ 99 (103)
.-.+..|||++|+.
T Consensus 76 klrGv~S~GMl~sa 89 (112)
T 2cwp_A 76 KFSGVESQGMLILA 89 (112)
T ss_dssp EETTEEECSEECCE
T ss_pred eeCCEecccEEEEe
Confidence 34578899999985
No 7
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=5.04 E-value=1.5e+02 Score=19.70 Aligned_cols=14 Identities=7% Similarity=-0.156 Sum_probs=11.3
Q ss_pred cccccccCCccccc
Q 034146 86 KSCRALSQGTLCCT 99 (103)
Q Consensus 86 r~~~~Lsqg~~~~~ 99 (103)
+-.+..|||++|+.
T Consensus 76 kirGv~S~GMl~s~ 89 (112)
T 3g48_A 76 RVAGFKSEVLVLGG 89 (112)
T ss_dssp EETTEEECSEECEE
T ss_pred eECCeecCcEEeEe
Confidence 34688999999985
No 8
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Probab=4.72 E-value=1.7e+02 Score=19.46 Aligned_cols=14 Identities=7% Similarity=-0.175 Sum_probs=10.9
Q ss_pred cccccccCCccccc
Q 034146 86 KSCRALSQGTLCCT 99 (103)
Q Consensus 86 r~~~~Lsqg~~~~~ 99 (103)
.-.+..|||++|+.
T Consensus 77 kirGv~S~GMl~sa 90 (113)
T 2nzh_A 77 RIAGFKSEVLVLGG 90 (113)
T ss_dssp EETTEEECSEECEE
T ss_pred EECCEEeCCEEEEe
Confidence 34578899999975
No 9
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}
Probab=4.59 E-value=1.7e+02 Score=19.50 Aligned_cols=14 Identities=7% Similarity=-0.363 Sum_probs=11.1
Q ss_pred cccccccCCccccc
Q 034146 86 KSCRALSQGTLCCT 99 (103)
Q Consensus 86 r~~~~Lsqg~~~~~ 99 (103)
+-.+..|||++|+.
T Consensus 80 kirGv~S~GMl~sa 93 (116)
T 2q2i_A 80 QIGPFRSEVLTLGF 93 (116)
T ss_dssp EETTEEECCEECEE
T ss_pred EECCEEeCCEEEEe
Confidence 34578899999985
No 10
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}
Probab=4.00 E-value=2e+02 Score=19.69 Aligned_cols=14 Identities=7% Similarity=-0.363 Sum_probs=11.0
Q ss_pred cccccccCCccccc
Q 034146 86 KSCRALSQGTLCCT 99 (103)
Q Consensus 86 r~~~~Lsqg~~~~~ 99 (103)
.-.+..|||++|+.
T Consensus 95 kirGv~SeGMl~sa 108 (131)
T 2q2h_A 95 QIGPFRSEVLTLGF 108 (131)
T ss_dssp EETTEEECCEECEE
T ss_pred EECCEEeCcEEEEe
Confidence 34578899999985
Done!