BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034147
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U7O|A Chain A, Magnesium Dependent Phosphatase 1 (Mdp-1)
pdb|1U7P|A Chain A, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|B Chain B, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|C Chain C, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|D Chain D, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
Length = 164
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
LP+L VFDLDYTLWPF+ + + + LYP +L L+ G
Sbjct: 3 RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG 62
Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
+ VA ASR+ A L + F+
Sbjct: 63 VPVAAASRTSEIQGANQLLELFDLGKYFI 91
>pdb|2WM8|A Chain A, Crystal Structure Of Human Magnesium-Dependent Phosphatase
1 Of The Haloacid Dehalogenase Superfamily (Mgc5987)
Length = 187
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
LP+L VFDLDYTLWPF+ + + + LYP +L+ L+ G
Sbjct: 25 RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLG 84
Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
+ A ASR+ + A L + FV
Sbjct: 85 VPGAAASRTSEIEGANQLLELFDLFRYFV 113
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
I LYP+ K LEALK +G +AV + P + + L GI +F
Sbjct: 111 NISRLYPNVKETLEALKAQGYILAVVTNKPTKHV-QPILTAFGIDHLF 157
>pdb|1I4J|A Chain A, Crystal Structure Of L22 Ribosomal Protein Mutant
pdb|1I4J|B Chain B, Crystal Structure Of L22 Ribosomal Protein Mutant
Length = 110
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 36 FYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV 69
Y + Y DE P + P A+G + +K++ H+ V
Sbjct: 69 LYVKAAYVDEGPAVLPRARGRADIIKKRTSHITV 102
>pdb|3MC1|A Chain A, Crystal Structure Of A Predicted Phosphatase From
Clostridium Acetobutylicum
pdb|3MC1|B Chain B, Crystal Structure Of A Predicted Phosphatase From
Clostridium Acetobutylicum
Length = 226
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 29 LDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75
+DY F + +E+++ Y + +L +LK+ G H+ VA+ P
Sbjct: 70 IDYYRDYFKAKGXFENKV---YDGIEALLSSLKDYGFHLVVATSKPT 113
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
+IPY Y H K + ++E + A +P D K+ + GI +
Sbjct: 92 KIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECY 139
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
+IPY Y H K + ++E + A +P D K+ + GI +
Sbjct: 66 KIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECY 113
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
+IPY Y H K + ++E + A +P D K+ + GI +
Sbjct: 94 KIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECY 141
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
+IPY Y H K + ++E + A +P D K+ + GI +
Sbjct: 92 KIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECY 139
>pdb|1ZXI|B Chain B, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|E Chain E, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 809
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 32 TLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91
TLW + + P++ ++ L E IHV APDI F +K+G +S
Sbjct: 234 TLWGTF-------QAPHVIRTVVSLISGLPEHKIHVI------APDIGGGFGNKVGAYSG 280
Query: 92 FVPMVRLSCCI 102
+V V S +
Sbjct: 281 YVCAVVASIVL 291
>pdb|1N5W|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|B Chain B, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|E Chain E, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
Length = 809
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 32 TLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91
TLW + + P++ ++ L E IHV APDI F +K+G +S
Sbjct: 234 TLWGTF-------QAPHVIRTVVSLISGLPEHKIHVI------APDIGGGFGNKVGAYSG 280
Query: 92 FVPMVRLSCCI 102
+V V S +
Sbjct: 281 YVCAVVASIVL 291
>pdb|1BCC|F Chain F, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|F Chain F, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|F Chain F, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 109
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 40 CCYEDEIPYLYPHAKGILEALKEK 63
YE+++PYL P+ K ++ KE+
Sbjct: 81 TKYEEDVPYLEPYLKEVIRERKER 104
>pdb|1X1E|A Chain A, Crystal Structure Of Tt0495 Protein From Thermus
Thermophilus Hb8
pdb|2EKP|A Chain A, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|A Chain A, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|B Chain B, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|C Chain C, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|D Chain D, Structure Of Tt0495 Protein From Thermus Thermophilus
Length = 239
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 53 AKGILEALKEKGIHVAVASRSP 74
+ I EAL +G VA+ASR+P
Sbjct: 15 GRAIAEALVARGYRVAIASRNP 36
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
YP LEALK KG +AV S + +++K L L + F
Sbjct: 83 YPEIPYTLEALKSKGFKLAVVS-NKLEELSKKILDILNLSGYF 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.143 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,098,490
Number of Sequences: 62578
Number of extensions: 117090
Number of successful extensions: 418
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 24
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)