BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034147
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D967|MGDP1_MOUSE Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1
SV=1
Length = 164
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
LP+L VFDLDYTLWPF+ + + + LYP +L L+ G
Sbjct: 3 RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG 62
Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
+ VA ASR+ A L + F+
Sbjct: 63 VPVAAASRTSEIQGANQLLELFDLGKYFI 91
>sp|Q86V88|MGDP1_HUMAN Magnesium-dependent phosphatase 1 OS=Homo sapiens GN=MDP1 PE=1
SV=1
Length = 176
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
LP+L VFDLDYTLWPF+ + + + LYP +L+ L+ G
Sbjct: 3 RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLG 62
Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
+ A ASR+ + A L + FV
Sbjct: 63 VPGAAASRTSEIEGANQLLELFDLFRYFV 91
>sp|O94279|MGDP1_SCHPO Putative magnesium-dependent phosphatase P8B7.31
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.31 PE=1 SV=2
Length = 172
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 19/86 (22%)
Query: 21 LPRLVVFDLDYTLWPFYCEC------------------CYEDEIPYLYPHAKGILEALKE 62
P+ VVFDLDYTLWP + + Y EI + Y GIL+ L+
Sbjct: 7 FPKCVVFDLDYTLWPLWIDTHVTAPFKPSKNDPGVLIDKYGTEICF-YSDITGILQELRN 65
Query: 63 KGIHVAVASRSPAPDIAKTFLHKLGI 88
+ + + VASR+ AP AK L+ + +
Sbjct: 66 QKVTLCVASRTCAPKYAKQALNLMKV 91
>sp|P40081|MGDP1_YEAST Putative magnesium-dependent phosphatase YER134C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YER134C PE=1
SV=1
Length = 178
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 22/99 (22%)
Query: 22 PRLVVFDLDYTLWPFYCEC--------------------CYEDEIPYLYPHAKGILEALK 61
P + FDLDYT+WP YC+ C + +Y IL LK
Sbjct: 5 PDVAAFDLDYTIWPCYCDTHLHGPFKPVKSSNGEVLTIICRDGYELTIYKDIPRILGDLK 64
Query: 62 EKGIHVAVASRSPAPDIAKTFLH--KLGIHSMFVPMVRL 98
+ G+ + ASR+ AP+IA+ L K+ + P+ L
Sbjct: 65 DNGVKLMTASRTWAPEIAQEILKIFKVKYAGVVTPLANL 103
>sp|Q4QMY0|GPH_HAEI8 Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain
86-028NP) GN=NTHI0697 PE=3 SV=1
Length = 224
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
+ LYP+ K LE LKEKG +AV + P + + L GI +F M+
Sbjct: 93 NVSRLYPNVKETLETLKEKGYVLAVVTNKPTRHV-QPVLAAFGIDHLFSEML 143
>sp|Q9CKJ5|GPH_PASMU Phosphoglycolate phosphatase OS=Pasteurella multocida (strain Pm70)
GN=gph PE=3 SV=1
Length = 224
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
LYP+ K LE LK+KG +AV + P + + L GI +F
Sbjct: 96 LYPNVKSTLETLKQKGYLLAVVTNKPTKHV-QPVLQAFGIDHLF 138
>sp|P44755|GPH_HAEIN Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=gph PE=3 SV=1
Length = 224
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
+ LYP+ K LE LKEKG +AV + P + + L GI +F M+
Sbjct: 93 NVSRLYPNVKETLEILKEKGYVLAVVTNKPTRHV-QPVLAAFGIDHLFSEML 143
>sp|Q8F7Q0|NUOB_LEPIN NADH-quinone oxidoreductase subunit B OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar Lai (strain
56601) GN=nuoB PE=3 SV=1
Length = 186
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1 MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLW--PFYCECC 41
+ DL K +AL + Q N+ ++ + Y+LW PF CC
Sbjct: 3 LSDLSKTPGQALGDMVQLGNVESVIQWGRSYSLWPYPFATACC 45
>sp|Q72NT7|NUOB_LEPIC NADH-quinone oxidoreductase subunit B OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=nuoB PE=3 SV=1
Length = 186
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1 MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLW--PFYCECC 41
+ DL K +AL + Q N+ ++ + Y+LW PF CC
Sbjct: 3 LSDLSKTPGQALGDMVQLGNVESVIQWGRSYSLWPYPFATACC 45
>sp|Q31VP9|GPH_SHIBS Phosphoglycolate phosphatase OS=Shigella boydii serotype 4 (strain
Sb227) GN=SBO_3372 PE=3 SV=1
Length = 252
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 36 FYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
+Y E +E +L+PH L AL+ KG+ + + + P P +A L L I F
Sbjct: 101 YYSEVA--EEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVA-PLLEALDIAKYF 154
>sp|B3Q6T4|NUOB2_RHOPT NADH-quinone oxidoreductase subunit B 2 OS=Rhodopseudomonas
palustris (strain TIE-1) GN=nuoB2 PE=3 SV=1
Length = 208
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 1 MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFY--CECCYEDEIPYLYP 51
M D ++ E + + F L L + ++LWPF CCY +++ L P
Sbjct: 10 MPDEQRSVEEHMALSSLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTP 62
>sp|Q6N1Y9|NUOB2_RHOPA NADH-quinone oxidoreductase subunit B 2 OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=nuoB2 PE=3
SV=1
Length = 208
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 1 MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFY--CECCYEDEIPYLYP 51
M D ++ E + + F L L + ++LWPF CCY +++ L P
Sbjct: 10 MPDEQRSVEEHMALSSLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTP 62
>sp|Q45494|YKRA_BACSU Putative phosphatase YkrA OS=Bacillus subtilis (strain 168)
GN=ykrA PE=3 SV=1
Length = 257
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKT 81
+L+ FD+D T++ ++ IP + + L+ +G HV +AS RSP + K
Sbjct: 4 KLIFFDIDGTIYD------HDKNIP---ESTRKTVAELQRQGHHVFIASGRSPF--LVKP 52
Query: 82 FLHKLGIHSM 91
L +LGIHS
Sbjct: 53 ILEELGIHSF 62
>sp|Q32AJ7|GPH_SHIDS Phosphoglycolate phosphatase OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=SDY_3694 PE=3 SV=1
Length = 252
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 36 FYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP---------DIAKTF 82
+Y E +E +L+PH L AL+ KG+ + + + P P DIAK F
Sbjct: 101 YYGEVA--EEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYF 154
>sp|Q8FCW0|GPH_ECOL6 Phosphoglycolate phosphatase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=c4155 PE=3 SV=1
Length = 252
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 36 FYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP---------DIAKTF 82
+Y E +E +L+PH L AL+ KG+ + + + P P DIAK F
Sbjct: 101 YYGEVA--EEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYF 154
>sp|Q83PX1|GPH_SHIFL Phosphoglycolate phosphatase OS=Shigella flexneri GN=SF3403 PE=3
SV=1
Length = 252
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 36 FYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP---------DIAKTF 82
+Y E +E +L+PH L AL+ KG+ + + + P P DIAK F
Sbjct: 101 YYGEVA--EEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYF 154
>sp|P32662|GPH_ECOLI Phosphoglycolate phosphatase OS=Escherichia coli (strain K12)
GN=gph PE=1 SV=1
Length = 252
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 36 FYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
+Y E +E +L+PH L AL+ KG+ + + + P P +A L L I F
Sbjct: 101 YYGEVA--EEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAP-LLEALDIAKYF 154
>sp|P58422|GPH_ECO57 Phosphoglycolate phosphatase OS=Escherichia coli O157:H7 GN=gph
PE=3 SV=1
Length = 252
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 36 FYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP---------DIAKTF 82
+Y E +E +L+PH L AL+ KG+ + + + P P DIAK F
Sbjct: 101 YYGEVA--EEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYF 154
>sp|Q3YWN8|GPH_SHISS Phosphoglycolate phosphatase OS=Shigella sonnei (strain Ss046)
GN=SSON_3516 PE=3 SV=1
Length = 252
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 36 FYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
+Y E +E +L+PH L AL+ KG+ + + + P P +A L L I F
Sbjct: 101 YYGEVA--EEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAP-LLEALDIAKYF 154
>sp|Q82ZZ8|FENR_ENTFA Ferredoxin--NADP reductase OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=EF_2899 PE=3 SV=1
Length = 336
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIH 66
++ +L+ + PF + C E+E+ +L A G+L KG H
Sbjct: 69 LIANLEKQMQPFQHDVCLEEEVTHLAQEADGLLRLDTTKGTH 110
>sp|Q65Q22|GPH_MANSM Phosphoglycolate phosphatase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=MS2331 PE=3 SV=1
Length = 224
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPA 75
+ LYP+ K LE LKE+G +AV + P
Sbjct: 93 NVSRLYPNVKETLETLKEQGFILAVVTNKPT 123
>sp|Q8R6F5|RSMH_FUSNN Ribosomal RNA small subunit methyltransferase H OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=rsmH PE=3 SV=1
Length = 314
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87
H++GILE L +KG+ +++ + A + +K L K G
Sbjct: 39 HSEGILERLSDKGLLISIDQDTNAIEYSKKRLEKFG 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.143 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,553,930
Number of Sequences: 539616
Number of extensions: 1502006
Number of successful extensions: 5211
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5190
Number of HSP's gapped (non-prelim): 25
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)