Query 034147
Match_columns 103
No_of_seqs 150 out of 1962
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 10:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12689 Acid_PPase: Acid Phos 99.6 3.3E-15 7.1E-20 95.6 7.3 81 21-101 2-108 (169)
2 TIGR01685 MDP-1 magnesium-depe 99.6 5.3E-15 1.2E-19 95.2 7.5 77 22-101 2-105 (174)
3 TIGR01684 viral_ppase viral ph 99.6 1.6E-14 3.4E-19 99.0 8.4 72 20-101 124-196 (301)
4 PRK13288 pyrophosphatase PpaX; 99.5 3.7E-14 8.1E-19 93.3 6.8 54 46-102 80-133 (214)
5 TIGR01681 HAD-SF-IIIC HAD-supe 99.5 3.5E-14 7.6E-19 87.2 5.8 73 23-100 1-86 (128)
6 PHA03398 viral phosphatase sup 99.5 1E-13 2.3E-18 95.0 8.3 72 20-101 126-198 (303)
7 PLN02770 haloacid dehalogenase 99.5 5.9E-14 1.3E-18 94.6 6.5 54 46-102 106-159 (248)
8 PLN03243 haloacid dehalogenase 99.5 1.1E-13 2.4E-18 94.1 7.1 54 46-102 107-160 (260)
9 PRK13225 phosphoglycolate phos 99.5 8.8E-14 1.9E-18 95.1 6.6 53 46-101 140-192 (273)
10 COG0546 Gph Predicted phosphat 99.5 1.7E-13 3.6E-18 90.9 7.6 52 47-101 88-139 (220)
11 PRK10826 2-deoxyglucose-6-phos 99.5 1.5E-13 3.3E-18 90.9 7.2 53 46-101 90-142 (222)
12 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.5 2E-13 4.3E-18 91.7 7.5 69 20-101 6-77 (242)
13 PF13344 Hydrolase_6: Haloacid 99.5 2.9E-13 6.4E-18 80.1 6.9 63 25-100 1-66 (101)
14 TIGR03351 PhnX-like phosphonat 99.5 2.8E-13 6E-18 89.3 7.5 53 47-102 86-140 (220)
15 TIGR02253 CTE7 HAD superfamily 99.5 2.1E-13 4.6E-18 89.8 6.8 52 48-102 94-145 (221)
16 PRK14988 GMP/IMP nucleotidase; 99.5 2.3E-13 5E-18 90.6 6.6 53 47-102 92-144 (224)
17 COG0637 Predicted phosphatase/ 99.4 1.6E-13 3.4E-18 91.3 5.4 54 45-101 83-136 (221)
18 TIGR01428 HAD_type_II 2-haloal 99.4 3.2E-13 7E-18 87.8 5.6 52 47-101 91-142 (198)
19 PRK13223 phosphoglycolate phos 99.4 7E-13 1.5E-17 90.6 7.4 53 47-102 100-152 (272)
20 PRK13226 phosphoglycolate phos 99.4 5.3E-13 1.1E-17 88.9 6.5 52 47-101 94-145 (229)
21 PLN02575 haloacid dehalogenase 99.4 6.4E-13 1.4E-17 94.3 7.2 54 46-102 214-267 (381)
22 PRK13222 phosphoglycolate phos 99.4 1.1E-12 2.4E-17 86.5 7.7 53 46-101 91-143 (226)
23 TIGR01449 PGP_bact 2-phosphogl 99.4 6.6E-13 1.4E-17 86.9 6.0 53 46-101 83-135 (213)
24 TIGR01454 AHBA_synth_RP 3-amin 99.4 7.4E-13 1.6E-17 86.6 5.5 53 46-101 73-125 (205)
25 PRK11587 putative phosphatase; 99.4 1.5E-12 3.3E-17 86.0 6.8 52 46-101 81-132 (218)
26 TIGR01672 AphA HAD superfamily 99.4 3.8E-12 8.3E-17 85.5 8.5 78 22-102 63-169 (237)
27 cd01427 HAD_like Haloacid deha 99.4 2.3E-12 4.9E-17 77.8 6.6 73 24-100 1-73 (139)
28 TIGR01422 phosphonatase phosph 99.4 1.8E-12 3.8E-17 87.3 6.7 53 47-101 98-150 (253)
29 PLN02645 phosphoglycolate phos 99.4 2.6E-12 5.5E-17 89.3 7.3 69 21-101 27-97 (311)
30 TIGR02009 PGMB-YQAB-SF beta-ph 99.4 1.9E-12 4.1E-17 83.0 6.1 50 47-101 87-136 (185)
31 PRK06698 bifunctional 5'-methy 99.4 1.2E-12 2.5E-17 95.1 5.5 53 46-101 328-380 (459)
32 PLN02940 riboflavin kinase 99.4 1.5E-12 3.3E-17 92.7 5.8 53 46-101 91-144 (382)
33 TIGR00338 serB phosphoserine p 99.3 2.3E-12 5.1E-17 84.9 6.1 74 19-93 11-129 (219)
34 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.3 2.6E-12 5.6E-17 83.3 6.1 45 47-92 79-123 (201)
35 TIGR01662 HAD-SF-IIIA HAD-supe 99.3 3.2E-12 6.9E-17 78.4 5.9 65 23-89 1-73 (132)
36 PRK13478 phosphonoacetaldehyde 99.3 5.2E-12 1.1E-16 85.8 6.9 53 47-101 100-152 (267)
37 PRK10513 sugar phosphate phosp 99.3 1E-11 2.2E-16 84.1 8.2 58 22-89 3-60 (270)
38 PRK01158 phosphoglycolate phos 99.3 7.4E-12 1.6E-16 83.0 7.1 60 22-91 3-62 (230)
39 PRK10725 fructose-1-P/6-phosph 99.3 3.9E-12 8.5E-17 81.9 5.5 50 47-101 87-136 (188)
40 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.3 9.1E-12 2E-16 84.1 7.3 66 22-100 1-69 (249)
41 TIGR01452 PGP_euk phosphoglyco 99.3 8.9E-12 1.9E-16 85.3 7.3 67 22-100 2-70 (279)
42 PRK10530 pyridoxal phosphate ( 99.3 1.1E-11 2.3E-16 84.0 7.5 59 22-90 3-61 (272)
43 TIGR01487 SPP-like sucrose-pho 99.3 1.2E-11 2.6E-16 81.5 7.4 60 22-91 1-60 (215)
44 PRK15126 thiamin pyrimidine py 99.3 1.2E-11 2.6E-16 84.1 7.4 60 22-91 2-61 (272)
45 PRK10976 putative hydrolase; P 99.3 1E-11 2.3E-16 84.0 7.1 60 22-91 2-61 (266)
46 TIGR01656 Histidinol-ppas hist 99.3 9.5E-12 2.1E-16 77.9 6.3 66 23-89 1-82 (147)
47 PRK00192 mannosyl-3-phosphogly 99.3 1.2E-11 2.5E-16 84.4 7.2 62 21-92 3-64 (273)
48 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.3 9.9E-12 2.1E-16 84.3 6.8 71 22-100 1-73 (257)
49 PLN02954 phosphoserine phospha 99.3 8.4E-12 1.8E-16 82.5 6.1 42 47-89 83-124 (224)
50 PRK08942 D,D-heptose 1,7-bisph 99.3 1.8E-11 3.8E-16 78.9 7.4 54 21-74 2-55 (181)
51 TIGR01686 FkbH FkbH-like domai 99.3 1.5E-11 3.3E-16 85.7 7.2 71 21-92 2-78 (320)
52 PRK12702 mannosyl-3-phosphogly 99.3 1.9E-11 4.2E-16 84.0 7.3 61 22-92 1-61 (302)
53 TIGR01664 DNA-3'-Pase DNA 3'-p 99.3 3.3E-11 7.1E-16 77.1 7.9 67 22-89 13-94 (166)
54 PRK09449 dUMP phosphatase; Pro 99.3 1.3E-11 2.8E-16 81.6 5.6 51 47-101 94-144 (224)
55 PRK03669 mannosyl-3-phosphogly 99.2 3.2E-11 6.9E-16 82.2 7.5 60 20-89 5-64 (271)
56 COG0561 Cof Predicted hydrolas 99.2 3.3E-11 7.2E-16 81.5 7.3 60 21-90 2-61 (264)
57 TIGR01990 bPGM beta-phosphoglu 99.2 2E-11 4.4E-16 78.3 5.9 49 48-101 87-135 (185)
58 COG0647 NagD Predicted sugar p 99.2 2.3E-11 5E-16 83.0 6.5 70 19-100 5-77 (269)
59 TIGR02252 DREG-2 REG-2-like, H 99.2 3.7E-11 8E-16 78.3 7.2 50 48-101 105-154 (203)
60 TIGR01489 DKMTPPase-SF 2,3-dik 99.2 2E-11 4.3E-16 78.3 5.8 52 47-101 71-122 (188)
61 PRK10444 UMP phosphatase; Prov 99.2 3.3E-11 7.2E-16 81.5 7.1 66 22-100 1-69 (248)
62 PF13419 HAD_2: Haloacid dehal 99.2 1.1E-11 2.3E-16 78.0 4.1 54 45-101 74-127 (176)
63 TIGR01548 HAD-SF-IA-hyp1 haloa 99.2 2.8E-11 6E-16 78.8 6.2 47 53-102 111-157 (197)
64 TIGR01670 YrbI-phosphatas 3-de 99.2 2.4E-11 5.1E-16 76.8 5.6 68 22-92 1-71 (154)
65 TIGR02254 YjjG/YfnB HAD superf 99.2 2.9E-11 6.3E-16 79.5 6.1 51 47-101 96-146 (224)
66 TIGR01261 hisB_Nterm histidino 99.2 3.9E-11 8.3E-16 76.4 6.4 66 23-89 2-84 (161)
67 TIGR00213 GmhB_yaeD D,D-heptos 99.2 6.1E-11 1.3E-15 76.2 7.3 52 23-75 2-53 (176)
68 TIGR02461 osmo_MPG_phos mannos 99.2 6.1E-11 1.3E-15 79.1 6.8 56 24-90 1-56 (225)
69 TIGR02726 phenyl_P_delta pheny 99.2 6.8E-11 1.5E-15 75.9 6.5 72 20-92 5-77 (169)
70 COG1778 Low specificity phosph 99.2 5.1E-11 1.1E-15 74.9 5.2 72 19-92 5-78 (170)
71 smart00577 CPDc catalytic doma 99.2 2.7E-10 5.9E-15 71.4 8.3 76 22-101 2-95 (148)
72 TIGR01549 HAD-SF-IA-v1 haloaci 99.2 7.2E-11 1.6E-15 73.8 5.5 52 46-101 62-113 (154)
73 TIGR00099 Cof-subfamily Cof su 99.2 1.3E-10 2.7E-15 78.4 7.0 57 24-90 1-57 (256)
74 TIGR01509 HAD-SF-IA-v3 haloaci 99.2 9.1E-11 2E-15 74.8 5.8 51 47-101 84-134 (183)
75 PRK09552 mtnX 2-hydroxy-3-keto 99.2 1E-10 2.2E-15 77.4 6.2 44 45-90 71-114 (219)
76 COG0560 SerB Phosphoserine pho 99.2 5.8E-11 1.3E-15 78.7 5.0 46 47-93 76-121 (212)
77 TIGR01482 SPP-subfamily Sucros 99.2 1.1E-10 2.5E-15 77.0 6.4 56 25-90 1-56 (225)
78 TIGR01488 HAD-SF-IB Haloacid D 99.1 1.1E-10 2.3E-15 74.4 5.6 47 46-93 71-117 (177)
79 TIGR01689 EcbF-BcbF capsule bi 99.1 6.1E-10 1.3E-14 68.3 8.6 62 23-89 2-79 (126)
80 PF08282 Hydrolase_3: haloacid 99.1 1.5E-10 3.2E-15 76.6 6.3 56 25-90 1-56 (254)
81 TIGR02463 MPGP_rel mannosyl-3- 99.1 1.9E-10 4.1E-15 76.0 6.7 56 24-89 1-56 (221)
82 TIGR02137 HSK-PSP phosphoserin 99.1 8.9E-11 1.9E-15 77.3 5.0 47 47-95 67-113 (203)
83 PRK06769 hypothetical protein; 99.1 2E-10 4.4E-15 73.8 6.4 70 20-92 2-79 (173)
84 TIGR01993 Pyr-5-nucltdase pyri 99.1 1.1E-10 2.4E-15 75.1 5.2 49 47-101 83-131 (184)
85 PTZ00174 phosphomannomutase; P 99.1 2.3E-10 5.1E-15 77.1 7.0 55 21-85 4-58 (247)
86 PRK10563 6-phosphogluconate ph 99.1 1.1E-10 2.4E-15 77.0 5.1 49 46-100 86-135 (221)
87 PLN02887 hydrolase family prot 99.1 2.4E-10 5.2E-15 85.1 7.3 60 20-89 306-365 (580)
88 PRK13582 thrH phosphoserine ph 99.1 1.4E-10 3.1E-15 75.6 5.2 47 45-93 65-111 (205)
89 PLN02919 haloacid dehalogenase 99.1 2.4E-10 5.2E-15 90.0 7.2 50 49-101 162-212 (1057)
90 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.1 1.6E-10 3.6E-15 75.1 5.2 46 48-94 87-132 (202)
91 PRK11590 hypothetical protein; 99.1 3.1E-10 6.6E-15 74.9 6.4 40 48-88 95-135 (211)
92 TIGR01486 HAD-SF-IIB-MPGP mann 99.1 3.5E-10 7.7E-15 76.4 6.6 57 24-90 1-57 (256)
93 TIGR02247 HAD-1A3-hyp Epoxide 99.1 3E-10 6.4E-15 74.5 6.0 54 46-101 92-146 (211)
94 PRK09484 3-deoxy-D-manno-octul 99.1 3.1E-10 6.7E-15 73.5 5.9 72 20-92 19-91 (183)
95 PRK11133 serB phosphoserine ph 99.1 2.6E-10 5.6E-15 79.7 5.6 46 46-92 179-224 (322)
96 PHA02597 30.2 hypothetical pro 99.1 2.9E-10 6.3E-15 73.9 5.5 53 47-101 73-127 (197)
97 PF05152 DUF705: Protein of un 99.1 1.6E-09 3.5E-14 73.9 8.6 74 18-100 118-191 (297)
98 COG1011 Predicted hydrolase (H 99.0 4.7E-10 1E-14 74.0 5.8 51 47-101 98-148 (229)
99 PRK14502 bifunctional mannosyl 99.0 7.3E-10 1.6E-14 83.4 7.2 62 19-90 413-474 (694)
100 PHA02530 pseT polynucleotide k 99.0 5E-10 1.1E-14 77.1 5.9 77 21-101 157-238 (300)
101 PRK11009 aphA acid phosphatase 99.0 2.8E-09 6E-14 71.8 8.9 78 22-101 63-170 (237)
102 TIGR01533 lipo_e_P4 5'-nucleot 99.0 2.6E-09 5.6E-14 73.0 8.7 80 19-99 72-170 (266)
103 TIGR01545 YfhB_g-proteo haloac 99.0 1.1E-09 2.4E-14 72.4 6.4 40 48-88 94-134 (210)
104 smart00775 LNS2 LNS2 domain. T 99.0 1.5E-09 3.4E-14 68.8 6.7 60 24-85 1-66 (157)
105 TIGR01668 YqeG_hyp_ppase HAD s 99.0 2.1E-09 4.6E-14 68.8 7.2 62 20-90 23-85 (170)
106 PRK10748 flavin mononucleotide 99.0 6.1E-10 1.3E-14 74.6 4.9 46 47-101 112-157 (238)
107 PRK09456 ?-D-glucose-1-phospha 99.0 5.3E-10 1.1E-14 72.9 4.5 51 48-101 84-135 (199)
108 TIGR01663 PNK-3'Pase polynucle 99.0 2.2E-09 4.8E-14 79.2 7.8 77 20-101 166-257 (526)
109 PLN02779 haloacid dehalogenase 99.0 2.5E-09 5.4E-14 73.7 7.5 44 48-92 144-187 (286)
110 COG4996 Predicted phosphatase 99.0 2.9E-09 6.2E-14 65.4 6.3 69 23-92 1-84 (164)
111 PRK08238 hypothetical protein; 98.9 3.8E-09 8.1E-14 77.4 7.7 73 23-101 11-119 (479)
112 TIGR01460 HAD-SF-IIA Haloacid 98.9 2.6E-09 5.6E-14 71.7 6.3 63 25-100 1-67 (236)
113 TIGR01484 HAD-SF-IIB HAD-super 98.9 3.4E-09 7.3E-14 69.2 6.6 55 24-87 1-55 (204)
114 PRK10187 trehalose-6-phosphate 98.9 3.6E-09 7.9E-14 72.2 6.4 62 22-88 14-76 (266)
115 PF06888 Put_Phosphatase: Puta 98.9 3.1E-09 6.8E-14 71.3 5.7 53 45-100 68-122 (234)
116 TIGR01456 CECR5 HAD-superfamil 98.9 2.8E-09 6.2E-14 74.4 5.1 56 24-89 2-64 (321)
117 TIGR03333 salvage_mtnX 2-hydro 98.9 5.2E-09 1.1E-13 69.1 5.7 42 46-88 68-109 (214)
118 KOG2882 p-Nitrophenyl phosphat 98.9 9.1E-09 2E-13 70.7 6.8 68 21-100 21-91 (306)
119 TIGR01485 SPP_plant-cyano sucr 98.9 5.3E-09 1.1E-13 70.4 5.6 60 24-90 3-62 (249)
120 PLN02423 phosphomannomutase 98.9 8.7E-09 1.9E-13 69.5 6.5 56 19-85 3-59 (245)
121 COG2179 Predicted hydrolase of 98.9 1.4E-08 3.1E-13 64.5 6.9 61 21-90 27-87 (175)
122 PRK05446 imidazole glycerol-ph 98.8 1.8E-08 3.9E-13 71.3 7.8 67 22-89 2-85 (354)
123 TIGR01493 HAD-SF-IA-v2 Haloaci 98.8 1E-09 2.2E-14 69.9 0.5 45 47-101 89-133 (175)
124 TIGR02471 sucr_syn_bact_C sucr 98.8 1.9E-08 4.1E-13 67.2 5.5 54 24-89 1-54 (236)
125 KOG2914 Predicted haloacid-hal 98.8 1.5E-08 3.3E-13 67.5 4.9 49 43-92 87-136 (222)
126 KOG1615 Phosphoserine phosphat 98.7 3.5E-08 7.6E-13 64.3 6.0 46 44-90 84-129 (227)
127 TIGR02251 HIF-SF_euk Dullard-l 98.7 7.9E-08 1.7E-12 61.2 7.5 74 23-100 2-91 (162)
128 TIGR02250 FCP1_euk FCP1-like p 98.7 8.6E-08 1.9E-12 60.8 7.5 78 21-101 5-109 (156)
129 PLN03017 trehalose-phosphatase 98.7 4.3E-08 9.4E-13 69.5 6.7 58 20-83 109-166 (366)
130 PF08645 PNK3P: Polynucleotide 98.7 2.4E-08 5.2E-13 63.5 4.8 51 23-73 1-54 (159)
131 PF03031 NIF: NLI interacting 98.7 4.3E-08 9.2E-13 61.8 5.5 74 23-100 1-85 (159)
132 PLN02151 trehalose-phosphatase 98.7 6.7E-08 1.4E-12 68.3 6.2 64 15-84 91-154 (354)
133 COG3769 Predicted hydrolase (H 98.7 8.9E-08 1.9E-12 63.6 6.3 60 20-90 5-64 (274)
134 TIGR01675 plant-AP plant acid 98.7 2.6E-07 5.5E-12 61.9 8.5 86 5-90 57-164 (229)
135 PLN02580 trehalose-phosphatase 98.7 7.3E-08 1.6E-12 68.8 6.1 59 21-85 118-176 (384)
136 TIGR02245 HAD_IIID1 HAD-superf 98.6 1.6E-07 3.4E-12 61.6 6.9 79 7-89 6-84 (195)
137 KOG4549 Magnesium-dependent ph 98.6 2.8E-07 6E-12 56.2 6.7 70 22-91 18-87 (144)
138 PRK14501 putative bifunctional 98.6 1.2E-07 2.5E-12 72.6 6.1 63 21-88 491-554 (726)
139 TIGR01544 HAD-SF-IE haloacid d 98.6 7.3E-07 1.6E-11 61.3 9.1 46 46-92 119-164 (277)
140 KOG3120 Predicted haloacid deh 98.6 7.4E-08 1.6E-12 63.9 3.9 76 21-99 12-133 (256)
141 TIGR01691 enolase-ppase 2,3-di 98.5 7.1E-07 1.5E-11 59.5 7.5 47 45-92 92-141 (220)
142 TIGR00685 T6PP trehalose-phosp 98.5 4.3E-07 9.4E-12 61.1 6.0 52 22-77 3-55 (244)
143 PLN02205 alpha,alpha-trehalose 98.5 4.8E-07 1E-11 70.3 6.4 59 21-86 595-654 (854)
144 TIGR01680 Veg_Stor_Prot vegeta 98.5 2.5E-06 5.4E-11 58.4 9.0 70 21-90 100-189 (275)
145 PF03767 Acid_phosphat_B: HAD 98.5 2.7E-07 5.8E-12 61.9 4.3 70 20-90 70-159 (229)
146 PF09419 PGP_phosphatase: Mito 98.4 1.1E-06 2.3E-11 56.4 6.8 61 20-89 39-108 (168)
147 KOG3109 Haloacid dehalogenase- 98.4 5.5E-07 1.2E-11 59.7 5.2 50 47-101 99-148 (244)
148 PF08235 LNS2: LNS2 (Lipin/Ned 98.4 1.1E-06 2.3E-11 55.8 6.2 62 24-86 1-67 (157)
149 COG1877 OtsB Trehalose-6-phosp 98.4 8.8E-07 1.9E-11 60.6 5.9 63 21-88 17-80 (266)
150 COG0241 HisB Histidinol phosph 98.4 9.7E-07 2.1E-11 57.2 5.0 53 22-74 5-57 (181)
151 PF06941 NT5C: 5' nucleotidase 98.3 9E-07 2E-11 57.5 4.7 31 46-76 71-101 (191)
152 PLN02382 probable sucrose-phos 98.3 1.6E-06 3.4E-11 62.7 6.2 62 22-90 9-70 (413)
153 COG4359 Uncharacterized conser 98.3 3.5E-06 7.7E-11 54.7 6.0 42 45-87 70-111 (220)
154 PTZ00445 p36-lilke protein; Pr 98.2 8.6E-06 1.9E-10 53.9 6.8 70 21-90 42-131 (219)
155 KOG3085 Predicted hydrolase (H 98.2 4.9E-06 1.1E-10 56.0 5.4 51 46-100 111-161 (237)
156 COG3882 FkbH Predicted enzyme 98.2 1E-05 2.2E-10 59.2 7.1 72 14-86 214-292 (574)
157 PLN03064 alpha,alpha-trehalose 98.2 6.1E-06 1.3E-10 64.7 6.3 66 22-88 591-662 (934)
158 PF02358 Trehalose_PPase: Treh 98.1 2.4E-06 5.1E-11 57.2 3.6 48 26-77 1-49 (235)
159 TIGR02244 HAD-IG-Ncltidse HAD 98.1 7.3E-06 1.6E-10 58.0 5.7 55 45-102 181-243 (343)
160 PLN03063 alpha,alpha-trehalose 98.1 8.3E-06 1.8E-10 63.2 6.3 64 22-87 507-571 (797)
161 PF05116 S6PP: Sucrose-6F-phos 98.1 5.8E-06 1.3E-10 55.9 4.4 66 22-100 2-67 (247)
162 PLN02811 hydrolase 98.0 7.5E-06 1.6E-10 54.1 4.4 54 46-101 76-129 (220)
163 COG2503 Predicted secreted aci 97.9 0.00013 2.8E-09 49.4 8.4 71 21-91 78-168 (274)
164 TIGR01525 ATPase-IB_hvy heavy 97.9 4.1E-05 8.9E-10 57.2 6.1 65 21-92 363-428 (556)
165 KOG3040 Predicted sugar phosph 97.8 6.7E-05 1.5E-09 49.8 6.0 69 20-100 5-75 (262)
166 KOG1618 Predicted phosphatase 97.7 0.00017 3.7E-09 50.6 6.5 57 22-89 35-99 (389)
167 TIGR01511 ATPase-IB1_Cu copper 97.5 0.00023 5E-09 53.4 5.8 61 22-89 385-445 (562)
168 TIGR01512 ATPase-IB2_Cd heavy 97.5 0.00022 4.7E-09 53.2 5.1 63 23-92 343-406 (536)
169 PF06437 ISN1: IMP-specific 5' 97.4 0.0012 2.6E-08 47.3 7.6 58 21-86 146-203 (408)
170 KOG3189 Phosphomannomutase [Li 97.4 0.00052 1.1E-08 45.3 5.0 45 23-77 12-56 (252)
171 PF00702 Hydrolase: haloacid d 97.1 0.00077 1.7E-08 43.6 3.9 43 47-90 126-168 (215)
172 PF12710 HAD: haloacid dehalog 97.0 0.0012 2.7E-08 42.1 4.0 40 50-90 87-130 (192)
173 TIGR01522 ATPase-IIA2_Ca golgi 97.0 0.0036 7.9E-08 49.4 7.0 46 46-92 526-571 (884)
174 PF11019 DUF2608: Protein of u 96.9 0.0037 8.1E-08 42.6 6.0 68 21-89 19-124 (252)
175 KOG2134 Polynucleotide kinase 96.7 0.0022 4.8E-08 46.1 3.6 54 21-74 74-130 (422)
176 COG3700 AphA Acid phosphatase 96.6 0.014 3.1E-07 38.1 6.7 80 20-101 61-168 (237)
177 PRK11033 zntA zinc/cadmium/mer 96.6 0.0069 1.5E-07 47.0 6.1 64 21-91 547-610 (741)
178 PF04312 DUF460: Protein of un 96.6 0.014 2.9E-07 36.3 6.3 58 23-90 44-103 (138)
179 PRK10671 copA copper exporting 96.6 0.0065 1.4E-07 47.7 6.0 65 21-92 629-693 (834)
180 PLN02499 glycerol-3-phosphate 96.6 0.0052 1.1E-07 45.6 5.0 33 56-90 101-134 (498)
181 PLN02177 glycerol-3-phosphate 96.5 0.011 2.5E-07 44.0 6.7 34 56-91 115-149 (497)
182 TIGR01497 kdpB K+-transporting 96.4 0.01 2.2E-07 45.8 5.8 64 22-92 426-489 (675)
183 COG4229 Predicted enolase-phos 96.4 0.012 2.7E-07 38.5 5.3 41 45-86 100-140 (229)
184 COG2217 ZntA Cation transport 96.2 0.01 2.3E-07 45.9 5.0 62 24-92 519-580 (713)
185 KOG2116 Protein involved in pl 96.1 0.012 2.7E-07 44.8 4.9 65 21-86 529-598 (738)
186 PRK01122 potassium-transportin 96.0 0.03 6.6E-07 43.2 6.6 64 22-92 425-488 (679)
187 COG4087 Soluble P-type ATPase 95.8 0.019 4.1E-07 35.7 3.9 55 24-90 16-70 (152)
188 PF01740 STAS: STAS domain; I 95.8 0.051 1.1E-06 32.2 5.8 84 3-99 23-112 (117)
189 PRK14010 potassium-transportin 95.7 0.025 5.5E-07 43.6 5.0 64 22-92 421-484 (673)
190 PF05761 5_nucleotid: 5' nucle 95.4 0.034 7.4E-07 41.0 4.8 54 44-100 179-241 (448)
191 TIGR01647 ATPase-IIIA_H plasma 95.2 0.049 1.1E-06 42.5 5.3 44 46-90 440-483 (755)
192 COG0731 Fe-S oxidoreductases [ 95.2 0.2 4.4E-06 35.0 7.7 64 6-84 61-128 (296)
193 TIGR01517 ATPase-IIB_Ca plasma 95.0 0.072 1.6E-06 42.6 5.8 43 47-90 578-620 (941)
194 PF00702 Hydrolase: haloacid d 94.9 0.015 3.2E-07 37.6 1.5 19 22-40 1-19 (215)
195 COG5083 SMP2 Uncharacterized p 94.9 0.02 4.3E-07 42.1 2.2 58 19-77 372-432 (580)
196 TIGR02886 spore_II_AA anti-sig 94.9 0.36 7.7E-06 28.0 7.3 75 3-92 22-96 (106)
197 PF12710 HAD: haloacid dehalog 94.8 0.015 3.3E-07 37.0 1.3 13 25-37 1-13 (192)
198 TIGR01106 ATPase-IIC_X-K sodiu 94.8 0.063 1.4E-06 43.2 4.9 42 47-89 567-608 (997)
199 TIGR01116 ATPase-IIA1_Ca sarco 94.7 0.085 1.8E-06 42.1 5.4 43 47-90 536-578 (917)
200 TIGR00815 sulP high affinity s 94.6 0.35 7.5E-06 36.6 8.2 84 3-99 469-558 (563)
201 TIGR02468 sucrsPsyn_pln sucros 94.5 0.19 4.2E-06 40.7 6.8 53 22-89 770-828 (1050)
202 cd07041 STAS_RsbR_RsbS_like Su 94.4 0.53 1.1E-05 27.4 7.7 72 4-90 25-96 (109)
203 KOG0202 Ca2+ transporting ATPa 94.3 0.14 3E-06 40.6 5.6 47 44-91 580-626 (972)
204 COG4850 Uncharacterized conser 94.2 0.16 3.4E-06 36.2 5.3 56 22-77 161-226 (373)
205 TIGR01524 ATPase-IIIB_Mg magne 94.2 0.11 2.4E-06 41.2 5.1 42 47-89 514-555 (867)
206 KOG0207 Cation transport ATPas 94.2 0.13 2.7E-06 40.9 5.2 65 21-92 702-766 (951)
207 PRK10517 magnesium-transportin 94.1 0.12 2.5E-06 41.3 5.0 42 47-89 549-590 (902)
208 PRK15122 magnesium-transportin 93.8 0.13 2.9E-06 41.0 4.8 43 46-89 548-590 (903)
209 TIGR01523 ATPase-IID_K-Na pota 93.6 0.17 3.8E-06 41.0 5.1 42 47-89 645-686 (1053)
210 COG4502 5'(3')-deoxyribonucleo 93.5 0.12 2.6E-06 32.6 3.3 26 47-73 67-92 (180)
211 TIGR01657 P-ATPase-V P-type AT 93.0 0.23 4.9E-06 40.3 5.1 41 48-89 656-696 (1054)
212 COG0474 MgtA Cation transport 92.8 0.29 6.4E-06 39.2 5.4 45 46-91 545-589 (917)
213 TIGR00377 ant_ant_sig anti-ant 92.7 1.2 2.5E-05 25.7 7.6 73 5-92 28-100 (108)
214 PF06189 5-nucleotidase: 5'-nu 92.5 0.29 6.2E-06 33.7 4.3 65 25-89 124-213 (264)
215 cd06844 STAS Sulphate Transpor 91.8 1.5 3.2E-05 25.2 7.6 74 3-91 22-95 (100)
216 TIGR01494 ATPase_P-type ATPase 91.8 0.49 1.1E-05 35.1 5.2 61 21-88 326-386 (499)
217 PF05822 UMPH-1: Pyrimidine 5' 90.7 0.42 9E-06 32.7 3.6 42 46-88 88-129 (246)
218 COG2433 Uncharacterized conser 90.0 1.6 3.6E-05 33.5 6.5 64 23-97 256-321 (652)
219 KOG2470 Similar to IMP-GMP spe 90.0 0.24 5.2E-06 35.8 2.1 36 50-86 242-277 (510)
220 cd07043 STAS_anti-anti-sigma_f 89.5 2.4 5.2E-05 23.7 8.2 72 5-92 24-95 (99)
221 TIGR01652 ATPase-Plipid phosph 89.4 0.66 1.4E-05 37.8 4.4 43 47-90 630-672 (1057)
222 KOG2469 IMP-GMP specific 5'-nu 89.4 1 2.2E-05 33.0 4.9 42 50-92 200-244 (424)
223 TIGR01452 PGP_euk phosphoglyco 89.0 1.2 2.6E-05 30.6 4.9 25 50-75 145-169 (279)
224 COG1366 SpoIIAA Anti-anti-sigm 88.6 3.5 7.6E-05 24.4 6.9 71 7-92 31-101 (117)
225 PF02590 SPOUT_MTase: Predicte 88.5 4.7 0.0001 25.6 7.2 65 8-87 54-119 (155)
226 KOG1605 TFIIF-interacting CTD 87.7 0.2 4.4E-06 34.5 0.4 66 21-88 88-169 (262)
227 cd05008 SIS_GlmS_GlmD_1 SIS (S 87.7 1.4 3E-05 26.1 4.1 28 51-78 60-87 (126)
228 COG1576 Uncharacterized conser 87.7 4.9 0.00011 25.6 6.6 63 7-84 53-115 (155)
229 PRK04531 acetylglutamate kinas 87.7 3.2 6.8E-05 30.4 6.5 77 7-97 19-97 (398)
230 TIGR02826 RNR_activ_nrdG3 anae 86.9 2.3 4.9E-05 26.7 4.8 38 49-86 73-110 (147)
231 cd05014 SIS_Kpsf KpsF-like pro 86.9 1.4 3E-05 26.2 3.8 29 50-78 60-88 (128)
232 TIGR01459 HAD-SF-IIA-hyp4 HAD- 85.9 0.25 5.4E-06 33.1 0.1 41 50-92 140-180 (242)
233 cd06595 GH31_xylosidase_XylS-l 85.8 2.1 4.5E-05 29.8 4.7 62 8-72 24-95 (292)
234 cd06539 CIDE_N_A CIDE_N domain 85.8 1.6 3.4E-05 24.6 3.3 32 3-35 22-53 (78)
235 PRK11660 putative transporter; 85.6 6.2 0.00014 30.0 7.4 70 3-90 476-545 (568)
236 PLN03190 aminophospholipid tra 84.8 2.3 5.1E-05 35.2 5.1 42 47-89 725-766 (1178)
237 PF03332 PMM: Eukaryotic phosp 84.8 1.1 2.5E-05 30.1 2.8 25 53-78 1-25 (220)
238 smart00266 CAD Domains present 84.5 2.3 5E-05 23.7 3.5 33 3-36 20-52 (74)
239 KOG2832 TFIIF-interacting CTD 84.5 2.9 6.2E-05 30.4 4.8 66 22-90 189-254 (393)
240 TIGR01458 HAD-SF-IIA-hyp3 HAD- 84.2 0.14 3.1E-06 34.8 -1.7 43 49-92 121-163 (257)
241 KOG2961 Predicted hydrolase (H 84.0 4.2 9E-05 26.2 4.9 46 20-73 41-88 (190)
242 cd05710 SIS_1 A subgroup of th 84.0 2.7 5.9E-05 25.1 4.1 28 51-78 61-88 (120)
243 CHL00202 argB acetylglutamate 83.9 6.3 0.00014 27.3 6.4 68 11-92 14-81 (284)
244 KOG0323 TFIIF-interacting CTD 83.8 3.8 8.1E-05 31.8 5.5 54 46-101 199-252 (635)
245 COG0548 ArgB Acetylglutamate k 83.2 7.3 0.00016 27.0 6.3 65 23-99 3-67 (265)
246 TIGR03127 RuMP_HxlB 6-phospho 83.1 2.8 6E-05 26.7 4.1 28 51-78 86-113 (179)
247 PF01380 SIS: SIS domain SIS d 82.9 4 8.7E-05 24.1 4.6 28 51-78 67-94 (131)
248 PRK13762 tRNA-modifying enzyme 82.2 3.2 6.9E-05 29.4 4.4 30 48-77 142-171 (322)
249 COG1501 Alpha-glucosidases, fa 82.1 4.9 0.00011 32.0 5.7 62 8-73 279-343 (772)
250 KOG0204 Calcium transporting A 81.0 5.4 0.00012 32.3 5.5 46 45-91 644-689 (1034)
251 PF00072 Response_reg: Respons 80.9 7.9 0.00017 21.8 6.8 64 9-92 33-98 (112)
252 cd01615 CIDE_N CIDE_N domain, 80.8 2.6 5.7E-05 23.7 2.9 33 3-36 22-54 (78)
253 KOG1050 Trehalose-6-phosphate 80.3 4.6 0.0001 31.9 5.0 46 21-78 502-548 (732)
254 cd05017 SIS_PGI_PMI_1 The memb 80.2 3.5 7.6E-05 24.5 3.6 35 51-88 57-91 (119)
255 TIGR00441 gmhA phosphoheptose 79.8 4.1 9E-05 25.4 3.9 28 51-78 93-120 (154)
256 cd05006 SIS_GmhA Phosphoheptos 79.6 3.9 8.5E-05 26.0 3.8 29 50-78 114-142 (177)
257 COG2216 KdpB High-affinity K+ 79.5 4.8 0.0001 30.8 4.6 44 48-92 447-490 (681)
258 cd05013 SIS_RpiR RpiR-like pro 78.9 3.8 8.3E-05 24.2 3.5 28 51-78 74-101 (139)
259 cd06592 GH31_glucosidase_KIAA1 78.4 14 0.0003 25.9 6.5 46 22-72 46-91 (303)
260 PRK13937 phosphoheptose isomer 78.3 5 0.00011 26.0 4.1 29 50-78 119-147 (188)
261 cd05005 SIS_PHI Hexulose-6-pho 78.3 4.9 0.00011 25.6 4.0 29 50-78 88-116 (179)
262 cd06591 GH31_xylosidase_XylS X 78.2 12 0.00027 26.3 6.3 61 8-71 23-86 (319)
263 PF00696 AA_kinase: Amino acid 77.9 3.8 8.3E-05 27.1 3.5 57 25-92 3-59 (242)
264 TIGR03365 Bsubt_queE 7-cyano-7 77.7 3.3 7.2E-05 27.9 3.2 30 47-76 83-112 (238)
265 TIGR03278 methan_mark_10 putat 76.6 28 0.0006 25.7 8.5 45 44-89 82-130 (404)
266 COG2044 Predicted peroxiredoxi 76.6 7.9 0.00017 23.6 4.3 52 21-74 33-85 (120)
267 TIGR02495 NrdG2 anaerobic ribo 76.6 13 0.00028 23.7 5.7 30 48-77 74-103 (191)
268 PRK00103 rRNA large subunit me 76.3 17 0.00037 23.1 7.4 63 8-85 54-117 (157)
269 TIGR01890 N-Ac-Glu-synth amino 75.1 19 0.0004 26.5 6.7 70 11-95 8-77 (429)
270 cd04795 SIS SIS domain. SIS (S 74.7 5.5 0.00012 21.7 3.2 21 51-71 61-81 (87)
271 PRK00414 gmhA phosphoheptose i 74.5 7.6 0.00017 25.3 4.2 28 51-78 125-152 (192)
272 cd02071 MM_CoA_mut_B12_BD meth 73.9 12 0.00026 22.4 4.7 41 51-92 65-107 (122)
273 smart00540 LEM in nuclear memb 73.9 3.2 7E-05 20.7 1.8 31 54-85 9-39 (44)
274 cd06537 CIDE_N_B CIDE_N domain 73.9 6.9 0.00015 22.2 3.3 32 3-36 22-53 (81)
275 COG1180 PflA Pyruvate-formate 73.8 4.2 9E-05 27.9 2.9 34 44-77 92-125 (260)
276 PRK10076 pyruvate formate lyas 73.8 6.4 0.00014 26.2 3.7 28 48-75 50-78 (213)
277 PRK13938 phosphoheptose isomer 73.4 7.9 0.00017 25.5 4.1 29 50-78 126-154 (196)
278 PF00578 AhpC-TSA: AhpC/TSA fa 73.1 12 0.00026 21.7 4.5 38 51-89 46-83 (124)
279 PF12017 Tnp_P_element: Transp 72.9 20 0.00042 24.5 5.9 37 52-89 197-233 (236)
280 cd06601 GH31_lyase_GLase GLase 72.5 9.3 0.0002 27.2 4.5 60 7-71 22-84 (332)
281 PRK00994 F420-dependent methyl 72.3 11 0.00024 26.0 4.5 41 49-90 72-112 (277)
282 PRK00942 acetylglutamate kinas 71.9 29 0.00062 23.9 6.7 66 12-91 15-80 (283)
283 PF13580 SIS_2: SIS domain; PD 71.6 5.6 0.00012 24.4 2.9 22 51-72 117-138 (138)
284 PF02017 CIDE-N: CIDE-N domain 71.5 13 0.00029 20.9 4.1 34 3-37 22-55 (78)
285 COG5663 Uncharacterized conser 70.7 2.2 4.8E-05 27.8 0.9 27 49-76 73-99 (194)
286 cd06536 CIDE_N_ICAD CIDE_N dom 70.3 9.8 0.00021 21.5 3.4 34 3-36 22-56 (80)
287 cd06603 GH31_GANC_GANAB_alpha 70.3 6.5 0.00014 27.9 3.3 61 7-72 22-85 (339)
288 PRK10886 DnaA initiator-associ 69.9 10 0.00023 24.9 4.0 28 51-78 123-150 (196)
289 PF09857 DUF2084: Uncharacteri 69.8 14 0.0003 21.1 3.9 57 3-64 2-58 (85)
290 PF14597 Lactamase_B_5: Metall 69.4 4 8.6E-05 26.9 1.9 42 48-89 38-80 (199)
291 PRK11557 putative DNA-binding 69.2 9.1 0.0002 26.1 3.8 29 50-78 188-216 (278)
292 PRK11543 gutQ D-arabinose 5-ph 69.0 10 0.00022 26.4 4.1 28 51-78 103-130 (321)
293 PF12965 DUF3854: Domain of un 68.9 9.9 0.00022 23.4 3.5 54 23-87 71-126 (130)
294 PLN02512 acetylglutamate kinas 68.3 39 0.00084 23.8 6.9 58 23-92 48-105 (309)
295 PRK15482 transcriptional regul 68.3 12 0.00025 25.8 4.2 29 50-78 195-223 (285)
296 PF13911 AhpC-TSA_2: AhpC/TSA 67.9 16 0.00035 21.3 4.3 33 55-88 4-36 (115)
297 PF00875 DNA_photolyase: DNA p 67.9 6 0.00013 24.8 2.5 43 49-92 51-93 (165)
298 PRK13936 phosphoheptose isomer 67.8 10 0.00022 24.8 3.6 28 51-78 125-152 (197)
299 PRK11337 DNA-binding transcrip 67.7 13 0.00027 25.6 4.3 29 50-78 200-228 (292)
300 PF06434 Aconitase_2_N: Aconit 67.5 11 0.00024 25.0 3.6 45 48-92 37-86 (204)
301 PF05240 APOBEC_C: APOBEC-like 67.5 10 0.00022 19.9 2.9 22 51-72 2-23 (55)
302 PRK02947 hypothetical protein; 66.8 9.7 0.00021 25.8 3.5 24 51-74 120-143 (246)
303 PLN02825 amino-acid N-acetyltr 66.5 26 0.00057 26.7 5.9 73 12-99 9-81 (515)
304 cd03018 PRX_AhpE_like Peroxire 66.0 25 0.00054 21.2 5.0 40 49-89 47-86 (149)
305 cd06598 GH31_transferase_CtsZ 65.9 33 0.00071 24.1 6.1 25 48-72 67-91 (317)
306 cd06538 CIDE_N_FSP27 CIDE_N do 65.9 12 0.00026 21.1 3.2 31 3-35 22-52 (79)
307 TIGR02244 HAD-IG-Ncltidse HAD 65.7 3.9 8.5E-05 29.3 1.5 17 20-36 10-26 (343)
308 cd06416 GH25_Lys1-like Lys-1 i 65.5 34 0.00074 22.1 5.9 58 11-74 76-133 (196)
309 COG1899 DYS1 Deoxyhypusine syn 65.5 47 0.001 23.7 6.7 65 10-91 42-106 (318)
310 cd08584 PI-PLCc_GDPD_SF_unchar 65.1 30 0.00065 22.9 5.4 25 53-77 138-166 (192)
311 PRK11382 frlB fructoselysine-6 64.9 14 0.0003 26.2 4.1 28 51-78 106-133 (340)
312 PRK14558 pyrH uridylate kinase 64.8 39 0.00084 22.5 6.0 28 55-83 192-219 (231)
313 PRK13717 conjugal transfer pro 64.5 6.2 0.00013 24.3 2.0 52 20-71 43-102 (128)
314 TIGR03470 HpnH hopanoid biosyn 64.4 11 0.00025 26.5 3.6 29 47-75 83-111 (318)
315 cd05007 SIS_Etherase N-acetylm 64.4 17 0.00037 24.9 4.3 28 51-78 132-159 (257)
316 PF01993 MTD: methylene-5,6,7, 64.3 13 0.00029 25.6 3.6 41 49-90 71-111 (276)
317 cd04241 AAK_FomA-like AAK_FomA 64.0 22 0.00048 23.9 4.8 37 51-89 23-60 (252)
318 TIGR02109 PQQ_syn_pqqE coenzym 63.6 19 0.00042 25.5 4.7 26 49-74 66-91 (358)
319 COG1911 RPL30 Ribosomal protei 63.4 25 0.00053 20.7 4.2 36 50-86 21-56 (100)
320 PF03033 Glyco_transf_28: Glyc 63.4 18 0.00039 21.5 4.0 37 48-89 11-47 (139)
321 KOG3128 Uncharacterized conser 63.4 11 0.00023 26.3 3.1 38 48-86 138-175 (298)
322 PRK05279 N-acetylglutamate syn 63.3 58 0.0012 24.0 7.3 69 10-93 15-83 (441)
323 TIGR02765 crypto_DASH cryptoch 63.3 11 0.00024 27.5 3.5 44 49-93 59-102 (429)
324 TIGR00640 acid_CoA_mut_C methy 63.1 26 0.00057 21.5 4.6 41 51-92 68-110 (132)
325 PRK05301 pyrroloquinoline quin 63.0 30 0.00065 24.8 5.6 42 47-89 73-116 (378)
326 PLN02588 glycerol-3-phosphate 62.4 26 0.00056 26.8 5.2 30 55-86 137-166 (525)
327 PRK10892 D-arabinose 5-phospha 62.3 12 0.00027 26.1 3.4 28 51-78 108-135 (326)
328 PRK10658 putative alpha-glucos 62.3 37 0.0008 26.7 6.2 26 48-73 322-347 (665)
329 PRK06186 hypothetical protein; 62.3 15 0.00032 24.9 3.7 57 26-90 51-108 (229)
330 PF01976 DUF116: Protein of un 62.1 22 0.00049 22.6 4.3 35 51-88 73-107 (158)
331 cd06535 CIDE_N_CAD CIDE_N doma 61.9 19 0.00041 20.2 3.5 32 3-35 22-53 (77)
332 PF02593 dTMP_synthase: Thymid 61.9 26 0.00057 23.6 4.8 42 50-92 61-108 (217)
333 cd08573 GDPD_GDE1 Glycerophosp 61.7 27 0.00058 23.8 4.9 34 54-89 218-252 (258)
334 cd03017 PRX_BCP Peroxiredoxin 61.7 32 0.00068 20.4 5.0 39 50-89 43-81 (140)
335 PF02142 MGS: MGS-like domain 61.0 8.1 0.00018 22.0 2.0 32 52-89 1-32 (95)
336 cd06600 GH31_MGAM-like This fa 60.9 47 0.001 23.4 6.1 45 22-71 40-84 (317)
337 PF05988 DUF899: Bacterial pro 60.8 25 0.00053 23.7 4.4 38 51-89 93-130 (211)
338 PF04007 DUF354: Protein of un 60.3 23 0.00051 25.3 4.6 39 51-91 14-52 (335)
339 KOG2599 Pyridoxal/pyridoxine/p 60.2 9.4 0.0002 26.8 2.4 32 46-77 162-193 (308)
340 PF01113 DapB_N: Dihydrodipico 59.9 24 0.00051 21.2 4.0 36 51-87 78-113 (124)
341 TIGR00393 kpsF KpsF/GutQ famil 59.9 16 0.00034 24.6 3.5 28 51-78 61-88 (268)
342 PRK09461 ansA cytoplasmic aspa 59.8 17 0.00036 26.0 3.8 26 51-76 251-276 (335)
343 COG2344 AT-rich DNA-binding pr 59.8 33 0.00071 22.9 4.8 61 22-90 110-173 (211)
344 TIGR00761 argB acetylglutamate 59.8 26 0.00056 23.3 4.5 39 50-90 15-53 (231)
345 COG4030 Uncharacterized protei 59.4 14 0.00031 25.5 3.1 41 47-89 82-122 (315)
346 PF02606 LpxK: Tetraacyldisacc 59.3 12 0.00027 26.6 3.0 24 51-74 52-75 (326)
347 COG0659 SUL1 Sulfate permease 59.1 81 0.0018 24.3 8.0 73 3-92 458-531 (554)
348 TIGR00246 tRNA_RlmH_YbeA rRNA 58.9 44 0.00095 21.2 7.2 61 9-85 54-114 (153)
349 PRK13111 trpA tryptophan synth 58.8 29 0.00063 23.9 4.7 28 49-76 127-155 (258)
350 PF12261 T_hemolysin: Thermost 58.8 25 0.00054 22.9 4.1 35 54-91 106-140 (179)
351 PF08497 Radical_SAM_N: Radica 58.5 33 0.00072 24.3 4.9 50 48-101 30-79 (302)
352 cd08579 GDPD_memb_like Glycero 58.3 30 0.00065 22.7 4.6 35 54-90 180-214 (220)
353 PF02635 DrsE: DsrE/DsrF-like 58.1 32 0.00069 19.7 4.3 43 25-71 39-82 (122)
354 PRK00028 infC translation init 58.0 42 0.00092 21.8 5.1 46 16-75 14-59 (177)
355 TIGR00274 N-acetylmuramic acid 58.0 24 0.00053 24.7 4.2 29 50-78 139-167 (291)
356 cd04252 AAK_NAGK-fArgBP AAK_NA 57.6 38 0.00083 22.9 5.1 42 51-94 15-56 (248)
357 PF00710 Asparaginase: Asparag 57.6 21 0.00046 25.1 4.0 28 49-76 238-265 (313)
358 cd04906 ACT_ThrD-I_1 First of 57.4 22 0.00048 19.8 3.4 24 51-74 53-76 (85)
359 COG0794 GutQ Predicted sugar p 57.3 25 0.00055 23.4 4.0 28 51-78 100-127 (202)
360 COG1737 RpiR Transcriptional r 57.3 19 0.00041 24.8 3.6 28 51-78 191-218 (281)
361 cd06602 GH31_MGAM_SI_GAA This 57.2 55 0.0012 23.3 6.0 59 8-71 23-86 (339)
362 COG1663 LpxK Tetraacyldisaccha 57.1 18 0.00038 26.1 3.4 24 51-74 64-87 (336)
363 PRK14557 pyrH uridylate kinase 57.1 55 0.0012 22.3 5.8 28 56-84 201-228 (247)
364 PF12694 MoCo_carrier: Putativ 57.1 14 0.00029 23.4 2.6 37 26-71 61-97 (145)
365 PRK05441 murQ N-acetylmuramic 57.1 26 0.00055 24.6 4.3 29 50-78 144-172 (299)
366 PF03465 eRF1_3: eRF1 domain 3 57.0 32 0.00068 20.5 4.1 33 53-87 71-103 (113)
367 COG0396 sufC Cysteine desulfur 56.4 49 0.0011 22.8 5.3 55 5-74 149-204 (251)
368 cd06589 GH31 The enzymes of gl 56.3 18 0.00039 24.7 3.3 65 8-75 23-90 (265)
369 cd04250 AAK_NAGK-C AAK_NAGK-C: 56.2 63 0.0014 22.2 6.1 67 11-91 5-71 (279)
370 TIGR03556 photolyase_8HDF deox 56.1 18 0.00039 26.9 3.6 43 49-92 53-95 (471)
371 cd08582 GDPD_like_2 Glyceropho 55.9 34 0.00073 22.6 4.6 36 53-90 190-225 (233)
372 PRK09454 ugpQ cytoplasmic glyc 55.6 32 0.0007 23.1 4.5 37 53-91 198-234 (249)
373 COG0263 ProB Glutamate 5-kinas 55.3 24 0.00051 25.7 3.8 37 50-90 30-66 (369)
374 cd07042 STAS_SulP_like_sulfate 55.3 36 0.00077 19.0 7.1 74 4-92 24-98 (107)
375 COG0602 NrdG Organic radical a 55.2 22 0.00047 23.7 3.5 28 49-76 84-111 (212)
376 PF05378 Hydant_A_N: Hydantoin 55.1 28 0.0006 22.4 3.9 22 51-72 134-155 (176)
377 cd08555 PI-PLCc_GDPD_SF Cataly 54.9 35 0.00076 21.7 4.4 36 53-90 138-174 (179)
378 COG0528 PyrH Uridylate kinase 54.7 40 0.00086 23.1 4.7 51 22-75 5-55 (238)
379 KOG1533 Predicted GTPase [Gene 54.6 70 0.0015 22.3 5.8 40 21-71 96-135 (290)
380 TIGR00682 lpxK tetraacyldisacc 54.6 19 0.00042 25.4 3.3 23 51-73 45-67 (311)
381 PF01055 Glyco_hydro_31: Glyco 54.5 68 0.0015 23.4 6.3 45 22-71 59-103 (441)
382 PF07611 DUF1574: Protein of u 54.5 32 0.00069 24.9 4.4 40 49-89 250-289 (345)
383 cd05009 SIS_GlmS_GlmD_2 SIS (S 54.3 24 0.00053 21.3 3.5 24 51-74 76-99 (153)
384 COG4753 Response regulator con 54.1 95 0.0021 23.6 7.5 66 7-92 36-103 (475)
385 PRK11145 pflA pyruvate formate 53.9 22 0.00047 23.8 3.4 27 49-75 83-110 (246)
386 PRK11302 DNA-binding transcrip 53.7 20 0.00044 24.3 3.3 24 50-73 188-211 (284)
387 PF10740 DUF2529: Protein of u 53.6 18 0.00039 23.5 2.8 21 51-71 95-115 (172)
388 KOG1154 Gamma-glutamyl kinase 53.6 29 0.00062 24.1 3.9 33 51-84 35-67 (285)
389 cd04237 AAK_NAGS-ABP AAK_NAGS- 53.5 73 0.0016 22.1 6.7 69 10-93 8-76 (280)
390 COG1763 MobB Molybdopterin-gua 53.2 20 0.00043 22.9 3.0 23 52-74 18-40 (161)
391 KOG2630 Enolase-phosphatase E- 53.1 28 0.00061 23.9 3.7 32 46-77 121-152 (254)
392 KOG2387 CTP synthase (UTP-ammo 52.9 40 0.00087 25.6 4.8 61 25-93 360-421 (585)
393 COG0279 GmhA Phosphoheptose is 52.8 27 0.00059 22.7 3.5 32 51-83 123-154 (176)
394 PRK11778 putative inner membra 52.8 84 0.0018 22.6 7.3 16 21-36 89-104 (330)
395 PF05198 IF3_N: Translation in 52.5 40 0.00086 18.7 4.5 41 21-75 12-52 (76)
396 PRK14556 pyrH uridylate kinase 52.2 47 0.001 22.8 4.8 29 55-84 210-238 (249)
397 PRK06740 histidinol-phosphatas 51.9 38 0.00083 24.1 4.5 41 48-90 269-317 (331)
398 cd06594 GH31_glucosidase_YihQ 51.7 21 0.00045 25.2 3.2 24 48-71 68-91 (317)
399 PF13439 Glyco_transf_4: Glyco 51.3 29 0.00063 20.8 3.5 24 53-76 18-41 (177)
400 TIGR00591 phr2 photolyase PhrI 51.3 27 0.00059 25.8 3.8 44 49-93 76-119 (454)
401 PF05991 NYN_YacP: YacP-like N 51.3 62 0.0013 20.6 6.1 82 3-87 23-114 (166)
402 cd08583 PI-PLCc_GDPD_SF_unchar 51.3 68 0.0015 21.3 5.5 35 54-90 195-229 (237)
403 cd08577 PI-PLCc_GDPD_SF_unchar 51.0 57 0.0012 22.0 5.0 38 51-89 185-222 (228)
404 PRK00652 lpxK tetraacyldisacch 51.0 22 0.00047 25.4 3.2 24 51-74 66-89 (325)
405 KOG0203 Na+/K+ ATPase, alpha s 50.9 15 0.00032 29.9 2.4 67 21-88 561-629 (1019)
406 TIGR01854 lipid_A_lpxH UDP-2,3 50.8 71 0.0015 21.2 7.6 75 9-88 18-92 (231)
407 PRK01906 tetraacyldisaccharide 50.8 23 0.00049 25.5 3.2 24 51-74 73-96 (338)
408 cd08574 GDPD_GDE_2_3_6 Glycero 50.8 41 0.00089 22.8 4.4 35 54-90 213-247 (252)
409 KOG0541 Alkyl hydroperoxide re 50.6 67 0.0014 20.8 6.6 61 21-90 43-104 (171)
410 cd08556 GDPD Glycerophosphodie 50.5 48 0.001 20.7 4.5 34 54-89 150-183 (189)
411 PF09506 Salt_tol_Pase: Glucos 50.5 46 0.001 24.2 4.6 45 24-75 4-48 (381)
412 PF03020 LEM: LEM domain; Int 50.4 1.5 3.3E-05 21.8 -1.9 31 55-86 10-40 (43)
413 TIGR02493 PFLA pyruvate format 50.3 57 0.0012 21.5 5.0 26 49-74 78-104 (235)
414 cd08564 GDPD_GsGDE_like Glycer 50.1 44 0.00096 22.7 4.5 36 53-90 212-251 (265)
415 TIGR02494 PFLE_PFLC glycyl-rad 50.0 25 0.00055 24.1 3.3 29 47-75 136-165 (295)
416 cd08607 GDPD_GDE5 Glycerophosp 49.7 61 0.0013 22.2 5.2 35 54-90 248-284 (290)
417 KOG0023 Alcohol dehydrogenase, 49.7 24 0.00053 25.5 3.2 35 56-92 197-231 (360)
418 cd08612 GDPD_GDE4 Glycerophosp 49.7 42 0.0009 23.4 4.4 37 53-91 250-286 (300)
419 TIGR00168 infC translation ini 49.6 68 0.0015 20.6 5.3 40 21-74 7-46 (165)
420 cd08563 GDPD_TtGDE_like Glycer 49.4 49 0.0011 21.8 4.5 35 54-90 190-224 (230)
421 PRK10949 protease 4; Provision 49.4 55 0.0012 25.6 5.3 17 21-37 325-341 (618)
422 cd08562 GDPD_EcUgpQ_like Glyce 49.3 49 0.0011 21.6 4.5 34 54-89 189-222 (229)
423 PRK10200 putative racemase; Pr 49.3 46 0.001 22.3 4.4 43 46-88 57-99 (230)
424 TIGR02399 salt_tol_Pase glucos 48.8 42 0.0009 24.5 4.2 46 23-75 9-54 (389)
425 PF13588 HSDR_N_2: Type I rest 48.5 21 0.00045 20.8 2.4 25 51-75 68-92 (112)
426 PF15649 Tox-REase-7: Restrict 48.5 50 0.0011 18.9 3.8 42 28-74 39-80 (87)
427 cd06599 GH31_glycosidase_Aec37 48.4 25 0.00054 24.7 3.1 63 8-71 28-93 (317)
428 PF03709 OKR_DC_1_N: Orn/Lys/A 48.0 37 0.0008 20.1 3.4 38 21-74 38-77 (115)
429 PRK01018 50S ribosomal protein 48.0 54 0.0012 19.0 4.6 36 48-84 16-51 (99)
430 PF08774 VRR_NUC: VRR-NUC doma 47.8 52 0.0011 18.7 5.8 49 19-73 46-99 (100)
431 cd00411 Asparaginase Asparagin 47.6 26 0.00056 24.9 3.1 27 51-77 249-275 (323)
432 PRK12570 N-acetylmuramic acid- 47.4 33 0.00071 24.1 3.6 28 51-78 141-168 (296)
433 cd02970 PRX_like2 Peroxiredoxi 47.4 60 0.0013 19.3 4.9 38 51-89 44-81 (149)
434 PF05761 5_nucleotid: 5' nucle 47.4 13 0.00028 27.7 1.6 17 20-36 10-26 (448)
435 COG4161 ArtP ABC-type arginine 47.3 57 0.0012 21.6 4.3 43 21-74 159-201 (242)
436 PRK05340 UDP-2,3-diacylglucosa 47.3 83 0.0018 21.0 7.4 38 51-88 57-94 (241)
437 cd02971 PRX_family Peroxiredox 47.3 59 0.0013 19.2 4.7 36 50-86 42-77 (140)
438 PF09547 Spore_IV_A: Stage IV 47.2 47 0.001 25.1 4.4 43 25-75 149-191 (492)
439 PRK13695 putative NTPase; Prov 47.2 70 0.0015 20.0 6.4 54 8-74 83-136 (174)
440 PRK00331 glucosamine--fructose 47.0 34 0.00075 26.2 3.9 28 51-78 350-377 (604)
441 cd08567 GDPD_SpGDE_like Glycer 46.9 51 0.0011 22.1 4.4 35 54-90 221-255 (263)
442 PF07788 DUF1626: Protein of u 46.9 49 0.0011 18.2 3.5 37 52-89 33-70 (70)
443 TIGR02803 ExbD_1 TonB system t 46.9 40 0.00087 20.1 3.5 12 24-35 51-62 (122)
444 COG1213 Predicted sugar nucleo 46.6 55 0.0012 22.5 4.4 37 53-89 34-71 (239)
445 PF13686 DrsE_2: DsrE/DsrF/Drs 46.5 25 0.00054 22.1 2.6 21 51-71 91-111 (148)
446 cd01580 AcnA_IRP_Swivel Aconit 46.5 65 0.0014 20.9 4.5 37 53-90 84-126 (171)
447 cd06525 GH25_Lyc-like Lyc mura 46.2 73 0.0016 20.3 4.9 43 24-75 85-128 (184)
448 KOG3107 Predicted haloacid deh 46.1 10 0.00022 27.9 0.9 18 22-39 197-214 (468)
449 cd06593 GH31_xylosidase_YicI Y 45.9 32 0.00069 23.9 3.3 61 9-72 24-87 (308)
450 PRK04302 triosephosphate isome 45.8 34 0.00075 22.7 3.4 27 48-74 98-124 (223)
451 PF03009 GDPD: Glycerophosphor 45.6 54 0.0012 21.3 4.3 34 54-89 212-247 (256)
452 cd04238 AAK_NAGK-like AAK_NAGK 45.4 73 0.0016 21.5 5.0 37 52-90 18-54 (256)
453 PF11909 NdhN: NADH-quinone ox 45.3 54 0.0012 20.8 3.9 36 55-90 33-68 (154)
454 PF02579 Nitro_FeMo-Co: Dinitr 45.2 44 0.00096 18.4 3.4 66 19-91 10-78 (94)
455 COG2861 Uncharacterized protei 45.0 55 0.0012 22.6 4.2 67 7-74 135-217 (250)
456 cd04246 AAK_AK-DapG-like AAK_A 44.9 63 0.0014 21.6 4.6 37 50-87 17-53 (239)
457 PRK13602 putative ribosomal pr 44.9 56 0.0012 18.3 4.2 30 48-77 11-40 (82)
458 PF13707 RloB: RloB-like prote 44.9 79 0.0017 20.0 6.3 25 51-76 77-101 (183)
459 PRK11024 colicin uptake protei 44.6 46 0.00099 20.5 3.6 11 24-34 64-74 (141)
460 cd08575 GDPD_GDE4_like Glycero 44.5 47 0.001 22.6 3.9 36 53-90 220-255 (264)
461 TIGR00520 asnASE_II L-asparagi 44.5 35 0.00076 24.6 3.4 27 51-77 278-304 (349)
462 TIGR02744 TrbI_Ftype type-F co 44.5 7.3 0.00016 23.5 -0.0 52 20-71 30-89 (112)
463 PLN02229 alpha-galactosidase 44.5 96 0.0021 23.2 5.7 26 49-74 125-151 (427)
464 TIGR01135 glmS glucosamine--fr 44.3 43 0.00093 25.7 4.1 28 51-78 352-379 (607)
465 PF05872 DUF853: Bacterial pro 44.3 50 0.0011 25.1 4.2 58 21-87 254-312 (502)
466 PF03193 DUF258: Protein of un 44.1 76 0.0017 20.3 4.6 32 54-86 2-33 (161)
467 PF00128 Alpha-amylase: Alpha 44.0 31 0.00067 23.2 3.0 19 51-69 52-70 (316)
468 PF05221 AdoHcyase: S-adenosyl 44.0 66 0.0014 22.5 4.5 28 48-75 51-78 (268)
469 COG5012 Predicted cobalamin bi 43.9 46 0.001 22.6 3.7 43 49-92 168-211 (227)
470 cd08568 GDPD_TmGDE_like Glycer 43.8 57 0.0012 21.5 4.2 24 54-77 184-207 (226)
471 PRK09437 bcp thioredoxin-depen 43.7 74 0.0016 19.3 5.0 38 51-89 51-88 (154)
472 PF04015 DUF362: Domain of unk 43.6 62 0.0014 21.0 4.3 41 50-91 21-65 (206)
473 cd08559 GDPD_periplasmic_GlpQ_ 43.6 56 0.0012 22.7 4.2 36 54-90 246-290 (296)
474 cd02955 SSP411 TRX domain, SSP 43.5 54 0.0012 19.8 3.7 40 21-62 81-120 (124)
475 PF08444 Gly_acyl_tr_C: Aralky 43.5 65 0.0014 18.6 3.8 36 53-89 41-76 (89)
476 cd08601 GDPD_SaGlpQ_like Glyce 43.4 61 0.0013 21.8 4.3 36 54-91 208-243 (256)
477 cd06597 GH31_transferase_CtsY 43.3 34 0.00073 24.4 3.2 23 49-71 83-105 (340)
478 cd08570 GDPD_YPL206cp_fungi Gl 43.2 67 0.0014 21.3 4.5 35 53-89 193-227 (234)
479 PRK13687 hypothetical protein; 43.2 64 0.0014 18.4 4.5 56 3-63 2-57 (85)
480 PF07494 Reg_prop: Two compone 43.1 27 0.00058 14.6 1.7 16 20-35 5-20 (24)
481 TIGR02260 benz_CoA_red_B benzo 42.8 56 0.0012 24.1 4.3 37 27-70 349-387 (413)
482 COG2810 Predicted type IV rest 42.6 83 0.0018 21.8 4.7 26 49-74 82-107 (284)
483 cd04256 AAK_P5CS_ProBA AAK_P5C 42.4 44 0.00096 23.3 3.6 33 51-84 34-66 (284)
484 PRK01221 putative deoxyhypusin 42.3 1.3E+02 0.0027 21.6 6.5 64 9-90 41-105 (312)
485 smart00642 Aamy Alpha-amylase 42.2 36 0.00078 21.6 2.9 19 51-69 70-88 (166)
486 PF01488 Shikimate_DH: Shikima 42.2 59 0.0013 19.7 3.8 33 53-86 24-56 (135)
487 TIGR03192 benz_CoA_bzdQ benzoy 41.9 56 0.0012 23.1 4.0 53 20-77 42-100 (293)
488 PF09001 DUF1890: Domain of un 41.9 29 0.00063 21.7 2.3 41 45-89 8-48 (139)
489 PTZ00106 60S ribosomal protein 41.8 75 0.0016 18.8 4.3 36 48-84 25-60 (108)
490 PF02698 DUF218: DUF218 domain 41.8 56 0.0012 19.9 3.7 41 50-90 83-124 (155)
491 KOG0208 Cation transport ATPas 41.5 38 0.00082 28.2 3.4 50 47-99 704-753 (1140)
492 smart00481 POLIIIAc DNA polyme 41.1 46 0.001 17.3 2.9 22 53-74 17-38 (67)
493 cd04261 AAK_AKii-LysC-BS AAK_A 41.1 85 0.0018 21.0 4.7 34 49-83 16-49 (239)
494 PF14336 DUF4392: Domain of un 41.1 55 0.0012 23.0 3.9 38 51-88 63-100 (291)
495 PF09338 Gly_reductase: Glycin 41.0 31 0.00067 25.7 2.7 39 26-71 301-339 (428)
496 TIGR02804 ExbD_2 TonB system t 41.0 52 0.0011 19.6 3.4 12 24-35 53-64 (121)
497 PF00271 Helicase_C: Helicase 40.8 57 0.0012 17.2 4.2 16 59-74 2-17 (78)
498 PF13579 Glyco_trans_4_4: Glyc 40.7 44 0.00095 19.6 3.1 25 53-77 7-31 (160)
499 PF13756 Stimulus_sens_1: Stim 40.6 39 0.00085 20.1 2.7 15 21-35 18-32 (112)
500 cd01421 IMPCH Inosine monophos 40.5 13 0.00029 24.4 0.8 33 50-88 10-42 (187)
No 1
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.61 E-value=3.3e-15 Score=95.64 Aligned_cols=81 Identities=44% Similarity=0.712 Sum_probs=57.7
Q ss_pred CCceEEEeCCCCccccccccc----------------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 21 LPRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~----------------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
-+++++||+|+|||+++++.. ..+....+||++.++|+.|+++|++++++|..+.+.+|++.++
T Consensus 2 ~PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~ 81 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLK 81 (169)
T ss_dssp S-SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred CCcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence 478999999999999988753 4566778999999999999999999999998777777999999
Q ss_pred HcCCC----------CccccCeeeecc
Q 034147 85 KLGIH----------SMFVPMVRLSCC 101 (103)
Q Consensus 85 ~~~l~----------~~~~~~~i~~~~ 101 (103)
.+++. ++|...+|+.++
T Consensus 82 ~l~i~~~~~~~~~~~~~F~~~eI~~gs 108 (169)
T PF12689_consen 82 LLEIDDADGDGVPLIEYFDYLEIYPGS 108 (169)
T ss_dssp HTT-C----------CCECEEEESSS-
T ss_pred hcCCCccccccccchhhcchhheecCc
Confidence 99999 888777777653
No 2
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.59 E-value=5.3e-15 Score=95.19 Aligned_cols=77 Identities=32% Similarity=0.443 Sum_probs=65.3
Q ss_pred CceEEEeCCCCccccccccc-----------------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCC-CchhHHHHHH
Q 034147 22 PRLVVFDLDYTLWPFYCECC-----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTFL 83 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~-----------------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~-~~~~i~~~~l 83 (103)
+++++||+|+|||+++++.- .......++||+.++|+.|+++|++++|+||+ .... ++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~-~~~~L 80 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEW-AYEIL 80 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHH-HHHHH
Confidence 68999999999999876521 33456789999999999999999999999998 6666 68899
Q ss_pred HHcCCC---------CccccCeeeecc
Q 034147 84 HKLGIH---------SMFVPMVRLSCC 101 (103)
Q Consensus 84 ~~~~l~---------~~~~~~~i~~~~ 101 (103)
+.+++. ++| +.+++++
T Consensus 81 ~~~~l~~~~~~~~~~~~F--d~iv~~~ 105 (174)
T TIGR01685 81 GTFEITYAGKTVPMHSLF--DDRIEIY 105 (174)
T ss_pred HhCCcCCCCCcccHHHhc--eeeeecc
Confidence 999998 888 8888765
No 3
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.57 E-value=1.6e-14 Score=99.00 Aligned_cols=72 Identities=26% Similarity=0.315 Sum_probs=61.3
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeee
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL 98 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~ 98 (103)
..+++++||+||||++. .+.+++. ||+.++|++|+++|++++|+||+++.. +...++++|+..+| +.|+
T Consensus 124 ~~~kvIvFDLDgTLi~~-------~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~-v~~~L~~lGLd~YF--dvII 193 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITD-------EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH-VVESMRKVKLDRYF--DIII 193 (301)
T ss_pred ccceEEEEecCCCCcCC-------CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH-HHHHHHHcCCCccc--CEEE
Confidence 35799999999999972 2233344 999999999999999999999999988 68999999999999 7877
Q ss_pred ecc
Q 034147 99 SCC 101 (103)
Q Consensus 99 ~~~ 101 (103)
++.
T Consensus 194 s~G 196 (301)
T TIGR01684 194 SGG 196 (301)
T ss_pred ECC
Confidence 764
No 4
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.52 E-value=3.7e-14 Score=93.27 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=48.4
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~ 102 (103)
...++||+.++|++|+++|++++|+||+.... +...++.+|+..+| +.+++++.
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~-~~~~l~~~gl~~~f--~~i~~~~~ 133 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDT-VEMGLKLTGLDEFF--DVVITLDD 133 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhce--eEEEecCc
Confidence 45689999999999999999999999999888 59999999999999 88888653
No 5
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.51 E-value=3.5e-14 Score=87.23 Aligned_cols=73 Identities=27% Similarity=0.316 Sum_probs=55.4
Q ss_pred ceEEEeCCCCcccccccccccCCCc-----ccChhHHHHHHHHHHCCCeEEEEeCC-CchhHHHHHHHHcC-------CC
Q 034147 23 RLVVFDLDYTLWPFYCECCYEDEIP-----YLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTFLHKLG-------IH 89 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~~~~-----~~~~g~~~~l~~l~~~G~~v~i~T~~-~~~~i~~~~l~~~~-------l~ 89 (103)
|+++||+|||||+.+.. ...... +++||+.++|++|+++|++++++||+ .... +...+++++ +.
T Consensus 1 kli~~DlD~Tl~~~~~~--~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~-~~~~l~~~~~~~~i~~l~ 77 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENI--VVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHV-AYELLKIFEDFGIIFPLA 77 (128)
T ss_pred CEEEEeCCCCCCCCCcc--cccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHH-HHHHHHhccccccchhhH
Confidence 57999999999985210 001101 47999999999999999999999999 5555 678888888 67
Q ss_pred CccccCeeeec
Q 034147 90 SMFVPMVRLSC 100 (103)
Q Consensus 90 ~~~~~~~i~~~ 100 (103)
++| +.++++
T Consensus 78 ~~f--~~~~~~ 86 (128)
T TIGR01681 78 EYF--DPLTIG 86 (128)
T ss_pred hhh--hhhhhc
Confidence 777 666555
No 6
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=99.51 E-value=1e-13 Score=95.04 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=60.8
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeee
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL 98 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~ 98 (103)
.-+++++||+||||++ . .+..++. |++.++|++|+++|++++|+||+++.. +...++++|+..+| +.|+
T Consensus 126 ~~~~~i~~D~D~TL~~------~-~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~-v~~~Le~lgL~~yF--DvII 195 (303)
T PHA03398 126 EIPHVIVFDLDSTLIT------D-EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREH-VVHSLKETKLEGYF--DIII 195 (303)
T ss_pred eeccEEEEecCCCccC------C-CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHHcCCCccc--cEEE
Confidence 3478999999999997 2 2233344 999999999999999999999999888 69999999999999 7777
Q ss_pred ecc
Q 034147 99 SCC 101 (103)
Q Consensus 99 ~~~ 101 (103)
+++
T Consensus 196 ~~g 198 (303)
T PHA03398 196 CGG 198 (303)
T ss_pred ECC
Confidence 764
No 7
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.50 E-value=5.9e-14 Score=94.55 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=48.9
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~ 102 (103)
...++||+.++|++|+++|++++|+||++... ++..++++++.++| +.+++++.
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~F--d~iv~~~~ 159 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPREN-AELMISLLGLSDFF--QAVIIGSE 159 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCChhhC--cEEEecCc
Confidence 35689999999999999999999999999888 69999999999999 88888763
No 8
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.49 E-value=1.1e-13 Score=94.08 Aligned_cols=54 Identities=28% Similarity=0.391 Sum_probs=48.7
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~ 102 (103)
...++||+.++|++|+++|++++|+||++... +...++++++..+| +.+++++.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~F--d~ii~~~d 160 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRY-LERAIEAVGMEGFF--SVVLAAED 160 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHH-HHHHHHHcCCHhhC--cEEEeccc
Confidence 45689999999999999999999999999888 59999999999999 88888763
No 9
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.48 E-value=8.8e-14 Score=95.13 Aligned_cols=53 Identities=21% Similarity=0.445 Sum_probs=47.3
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..+++||+.++|++|+++|++++|+||+.... +...++++|+.++| +.+++++
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~-~~~~L~~~gl~~~F--~~vi~~~ 192 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQN-IEAFLQRQGLRSLF--SVVQAGT 192 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhhe--EEEEecC
Confidence 45689999999999999999999999999888 69999999999999 6777654
No 10
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.48 E-value=1.7e-13 Score=90.94 Aligned_cols=52 Identities=27% Similarity=0.486 Sum_probs=47.9
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++|..|+++|++++|+||++... ++..++++|+.++| +.+++++
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~-~~~~l~~~gl~~~F--~~i~g~~ 139 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERE-LDILLKALGLADYF--DVIVGGD 139 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHhCCcccc--ceEEcCC
Confidence 4689999999999999999999999999998 69999999999999 8888743
No 11
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.48 E-value=1.5e-13 Score=90.87 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=47.6
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
...++||+.++|+.|+++|++++|+||+.... ++..++++++..+| +.+++++
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f--~~~~~~~ 142 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASPLHM-LEAVLTMFDLRDYF--DALASAE 142 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHH-HHHHHHhCcchhcc--cEEEEcc
Confidence 35689999999999999999999999999888 59999999999999 7888765
No 12
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.47 E-value=2e-13 Score=91.66 Aligned_cols=69 Identities=25% Similarity=0.190 Sum_probs=59.5
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHH--HHHHHcCCCC-ccccCe
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK--TFLHKLGIHS-MFVPMV 96 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~--~~l~~~~l~~-~~~~~~ 96 (103)
.++++++||+||||++ ...++||+.++|++|+++|++++++||+++.. .. ..++++|+.. +| +.
T Consensus 6 ~~~~~~~~D~dG~l~~----------~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~-~~~~~~L~~~gl~~~~~--~~ 72 (242)
T TIGR01459 6 NDYDVFLLDLWGVIID----------GNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNI-FSLHKTLKSLGINADLP--EM 72 (242)
T ss_pred hcCCEEEEeccccccc----------CCccCccHHHHHHHHHHCCCEEEEEeCCCCCh-HHHHHHHHHCCCCcccc--ce
Confidence 4588999999999997 35689999999999999999999999988765 45 6789999987 77 88
Q ss_pred eeecc
Q 034147 97 RLSCC 101 (103)
Q Consensus 97 i~~~~ 101 (103)
|+++.
T Consensus 73 Ii~s~ 77 (242)
T TIGR01459 73 IISSG 77 (242)
T ss_pred EEccH
Confidence 88764
No 13
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.46 E-value=2.9e-13 Score=80.09 Aligned_cols=63 Identities=29% Similarity=0.338 Sum_probs=48.4
Q ss_pred EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc---hhHHHHHHHHcCCCCccccCeeeec
Q 034147 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---PDIAKTFLHKLGIHSMFVPMVRLSC 100 (103)
Q Consensus 25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~---~~i~~~~l~~~~l~~~~~~~~i~~~ 100 (103)
++||+|||||. ...++||+.+++++|+++|++++++||++. ..+ ...++.+|+.- ..+.|+++
T Consensus 1 ~l~D~dGvl~~----------g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~-~~~L~~~Gi~~--~~~~i~ts 66 (101)
T PF13344_consen 1 FLFDLDGVLYN----------GNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEY-AKKLKKLGIPV--DEDEIITS 66 (101)
T ss_dssp EEEESTTTSEE----------TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHH-HHHHHHTTTT----GGGEEEH
T ss_pred CEEeCccEeEe----------CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHH-HHHHHhcCcCC--CcCEEECh
Confidence 68999999997 356899999999999999999999998873 342 55567888864 33777775
No 14
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.46 E-value=2.8e-13 Score=89.33 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=47.7
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC--CccccCeeeeccc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH--SMFVPMVRLSCCI 102 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~--~~~~~~~i~~~~~ 102 (103)
..++||+.++|++|+++|++++|+||++... ....++++++. .+| +.+++++.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~-~~~~l~~~~l~~~~~f--~~i~~~~~ 140 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDT-AERLLEKLGWTVGDDV--DAVVCPSD 140 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHHhhhhhhccC--CEEEcCCc
Confidence 4699999999999999999999999999888 59999999998 888 88887753
No 15
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.46 E-value=2.1e-13 Score=89.81 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=46.6
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~ 102 (103)
.++||+.++|++|+++|++++|+||++... +...++++++..+| +.+++++.
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~f--~~i~~~~~ 145 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVK-QWEKLERLGVRDFF--DAVITSEE 145 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHhCChHHhc--cEEEEecc
Confidence 688999999999999999999999999777 58899999999999 88887653
No 16
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.45 E-value=2.3e-13 Score=90.57 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=47.4
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~ 102 (103)
..++||+.++|++|+++|++++|+||++... ++..++++++..+| +.+++++.
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~f--d~iv~s~~ 144 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHN-LAVKLEHTGLDAHL--DLLLSTHT 144 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHH-HHHHHHHCCcHHHC--CEEEEeee
Confidence 4688999999999999999999999999888 58889999999999 88887653
No 17
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.44 E-value=1.6e-13 Score=91.28 Aligned_cols=54 Identities=37% Similarity=0.445 Sum_probs=48.1
Q ss_pred CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
....+.||+.++|++|+++|++++++|++++.. ++..++.+|+.++| +.+++++
T Consensus 83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~-~~~~L~~~gl~~~f--~~~v~~~ 136 (221)
T COG0637 83 EGLKPIPGVVELLEQLKARGIPLAVASSSPRRA-AERVLARLGLLDYF--DVIVTAD 136 (221)
T ss_pred cCCCCCccHHHHHHHHHhcCCcEEEecCChHHH-HHHHHHHccChhhc--chhccHH
Confidence 445789999999999999999999999999888 59999999999999 7777654
No 18
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.42 E-value=3.2e-13 Score=87.79 Aligned_cols=52 Identities=27% Similarity=0.310 Sum_probs=46.8
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++|++|+++|++++|+||++... ....++++|+..+| +.+++++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~gl~~~f--d~i~~s~ 142 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAM-LKSLVKHAGLDDPF--DAVLSAD 142 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHCCChhhh--heeEehh
Confidence 4578999999999999999999999999887 58999999998899 8888765
No 19
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.42 E-value=7e-13 Score=90.57 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=46.8
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~ 102 (103)
..++||+.++|+.|+++|++++|+||++... ++..++++++..+| +.+++++.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~-~~~~l~~~~i~~~f--~~i~~~d~ 152 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERF-VAPLLDQMKIGRYF--RWIIGGDT 152 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHH-HHHHHHHcCcHhhC--eEEEecCC
Confidence 4578999999999999999999999999877 58899999999888 77887753
No 20
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.42 E-value=5.3e-13 Score=88.94 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=46.2
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++|++|+++|++++|+||++... +...++++++..+| +.+++++
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~-~~~~l~~~~l~~~f--~~i~~~~ 145 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYL-ARLILPQLGWEQRC--AVLIGGD 145 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCchhcc--cEEEecC
Confidence 5689999999999999999999999999877 58889999998888 7777765
No 21
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.42 E-value=6.4e-13 Score=94.34 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=49.1
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~ 102 (103)
...++||+.++|+.|+++|++++|+||+++.. ++..++++|+.++| +.|++++.
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~-~~~~L~~lgL~~yF--d~Iv~sdd 267 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRPRKT-LENAIGSIGIRGFF--SVIVAAED 267 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCHHHc--eEEEecCc
Confidence 35689999999999999999999999999888 59999999999999 88988764
No 22
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.41 E-value=1.1e-12 Score=86.50 Aligned_cols=53 Identities=36% Similarity=0.490 Sum_probs=46.7
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
...++||+.++++.|+++|++++++||+.... ....++++++..+| +.+++++
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f--~~~~~~~ 143 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPF-VAPLLEALGIADYF--SVVIGGD 143 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCccCc--cEEEcCC
Confidence 35689999999999999999999999999887 58999999998888 7777654
No 23
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.40 E-value=6.6e-13 Score=86.93 Aligned_cols=53 Identities=26% Similarity=0.538 Sum_probs=47.5
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
...++||+.++|+.|+++|++++|+||++... ++..++++++..+| +.+++++
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f--~~~~~~~ 135 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPL-ARPLLELLGLAKYF--SVLIGGD 135 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCcHhhC--cEEEecC
Confidence 35689999999999999999999999999887 69999999999998 7888765
No 24
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.39 E-value=7.4e-13 Score=86.59 Aligned_cols=53 Identities=23% Similarity=0.448 Sum_probs=47.4
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
...++||+.++|++|+++|++++|+||++... +...++++++..+| +.+++++
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~~l~~~f--~~i~~~~ 125 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPR-ARSLLEALGLLPLF--DHVIGSD 125 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHcCChhhe--eeEEecC
Confidence 45789999999999999999999999999888 58899999999998 7787764
No 25
>PRK11587 putative phosphatase; Provisional
Probab=99.38 E-value=1.5e-12 Score=86.03 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=43.0
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
...++||+.++|+.|+++|++++|+||++... +...++..++ .++ +.+++++
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~-~~~~l~~~~l-~~~--~~i~~~~ 132 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPV-ASARHKAAGL-PAP--EVFVTAE 132 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchH-HHHHHHhcCC-CCc--cEEEEHH
Confidence 45689999999999999999999999999877 5778888887 445 5666653
No 26
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.37 E-value=3.8e-12 Score=85.52 Aligned_cols=78 Identities=19% Similarity=0.135 Sum_probs=59.9
Q ss_pred CceEEEeCCCCcccccccc-------c------------------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCC---
Q 034147 22 PRLVVFDLDYTLWPFYCEC-------C------------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRS--- 73 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~-------~------------------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~--- 73 (103)
+-+|+||+||||++..... . .......+++++.++|++++++|++++++||+
T Consensus 63 p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~ 142 (237)
T TIGR01672 63 PIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPG 142 (237)
T ss_pred CeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4489999999999965420 0 11223356677999999999999999999998
Q ss_pred -CchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147 74 -PAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (103)
Q Consensus 74 -~~~~i~~~~l~~~~l~~~~~~~~i~~~~~ 102 (103)
.... ++..++++|+.++| +.+++++.
T Consensus 143 k~~~~-a~~ll~~lGi~~~f--~~i~~~d~ 169 (237)
T TIGR01672 143 KTDTV-SKTLAKNFHIPAMN--PVIFAGDK 169 (237)
T ss_pred cCHHH-HHHHHHHhCCchhe--eEEECCCC
Confidence 4445 68888899999988 78887653
No 27
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.37 E-value=2.3e-12 Score=77.79 Aligned_cols=73 Identities=34% Similarity=0.417 Sum_probs=57.2
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC 100 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~ 100 (103)
+++||+||||++....... .....+++++.+++++|+++|++++++|++.... +...++.+++..++ +.+++.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~-~~~~~~~~~~~~~~--~~i~~~ 73 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE-IEELELYPGVKEALKELKEKGIKLALATNKSRRE-VLELLEELGLDDYF--DPVITS 73 (139)
T ss_pred CeEEccCCceEccCccccc-cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHH-HHHHHHHcCCchhh--hheecc
Confidence 4799999999985322111 2335789999999999999999999999999888 59999999986655 555543
No 28
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.37 E-value=1.8e-12 Score=87.35 Aligned_cols=53 Identities=8% Similarity=0.091 Sum_probs=45.9
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++|++|+++|++++|+||++... ++..++++++..+|. +.|++++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~-~~~~l~~~gl~~~f~-d~ii~~~ 150 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREM-MDVVAPEAALQGYRP-DYNVTTD 150 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHHHHhcCCCC-ceEEccc
Confidence 3678999999999999999999999999888 599999999988741 6777765
No 29
>PLN02645 phosphoglycolate phosphatase
Probab=99.36 E-value=2.6e-12 Score=89.30 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=54.7
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH--HHHHHHHcCCCCccccCeee
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRL 98 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i--~~~~l~~~~l~~~~~~~~i~ 98 (103)
.+++++||+|||||+. ..++||+.++|++|+++|++++++||++.... ....++++|+...+ +.|+
T Consensus 27 ~~~~~~~D~DGtl~~~----------~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~--~~I~ 94 (311)
T PLN02645 27 SVETFIFDCDGVIWKG----------DKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTE--EEIF 94 (311)
T ss_pred hCCEEEEeCcCCeEeC----------CccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCCh--hhEe
Confidence 5889999999999972 35789999999999999999999999884431 13445778886555 7787
Q ss_pred ecc
Q 034147 99 SCC 101 (103)
Q Consensus 99 ~~~ 101 (103)
++.
T Consensus 95 ts~ 97 (311)
T PLN02645 95 SSS 97 (311)
T ss_pred ehH
Confidence 763
No 30
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.36 E-value=1.9e-12 Score=83.04 Aligned_cols=50 Identities=32% Similarity=0.469 Sum_probs=44.3
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++|++|+++|++++++||+ .. ++..++++++..+| +.+++++
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~-~~~~l~~~~l~~~f--~~v~~~~ 136 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KN-ADRILAKLGLTDYF--DAIVDAD 136 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hh-HHHHHHHcChHHHC--CEeeehh
Confidence 578999999999999999999999998 55 58889999999998 7887764
No 31
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.36 E-value=1.2e-12 Score=95.06 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=48.1
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
...++||+.++|++|+++|++++|+||++... +...++++++.++| +.+++++
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~-~~~~l~~~~l~~~f--~~i~~~d 380 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEY-LRAIVSYYDLDQWV--TETFSIE 380 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHCCcHhhc--ceeEecC
Confidence 35689999999999999999999999999988 69999999999999 8888765
No 32
>PLN02940 riboflavin kinase
Probab=99.35 E-value=1.5e-12 Score=92.67 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=46.4
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH-HcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH-KLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~-~~~l~~~~~~~~i~~~~ 101 (103)
...++||+.++|++|+++|++++|+||++... +...++ ++++..+| +.+++++
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~-~~~~l~~~~gl~~~F--d~ii~~d 144 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPRAN-IEAKISCHQGWKESF--SVIVGGD 144 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHhccChHhhC--CEEEehh
Confidence 34688999999999999999999999999888 577776 78999999 8888875
No 33
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.35 E-value=2.3e-12 Score=84.86 Aligned_cols=74 Identities=34% Similarity=0.275 Sum_probs=59.4
Q ss_pred CCCCceEEEeCCCCccccccccc---------------------------------------------ccCCCcccChhH
Q 034147 19 ENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYPHA 53 (103)
Q Consensus 19 ~~~~~~~~fD~DGTL~~~~~~~~---------------------------------------------~~~~~~~~~~g~ 53 (103)
.+.+++++||+||||++.++... .......++||+
T Consensus 11 ~~~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 90 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVRENLPLTEGA 90 (219)
T ss_pred hccCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhcCCcCCCH
Confidence 34578999999999999653310 111334689999
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~ 93 (103)
.++|+.|+++|++++|+||+.... +...++++++..+|.
T Consensus 91 ~~~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~~i~~~~~ 129 (219)
T TIGR00338 91 EELVKTLKEKGYKVAVISGGFDLF-AEHVKDKLGLDAAFA 129 (219)
T ss_pred HHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCceEe
Confidence 999999999999999999999777 699999999988774
No 34
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.35 E-value=2.6e-12 Score=83.30 Aligned_cols=45 Identities=29% Similarity=0.261 Sum_probs=40.6
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
..++||+.++|+.|+++|++++|+|++.... ++..++++|+..+|
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~g~~~~~ 123 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCL-AKKVAEKLNPDYVY 123 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHhCCCeEE
Confidence 4678999999999999999999999999887 69999999987766
No 35
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.34 E-value=3.2e-12 Score=78.39 Aligned_cols=65 Identities=29% Similarity=0.394 Sum_probs=51.5
Q ss_pred ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC--------chhHHHHHHHHcCCC
Q 034147 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP--------APDIAKTFLHKLGIH 89 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~--------~~~i~~~~l~~~~l~ 89 (103)
|+++||+||||++. ..+........++|++.++|++|+++|++++++||++ ... .+..++++++.
T Consensus 1 k~~~~D~dgtL~~~-~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~-~~~~l~~~~l~ 73 (132)
T TIGR01662 1 KGVVLDLDGTLTDD-VPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR-VARRLEELGVP 73 (132)
T ss_pred CEEEEeCCCceecC-CCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH-HHHHHHHCCCC
Confidence 57999999999962 1111112234689999999999999999999999998 677 48889999985
No 36
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.32 E-value=5.2e-12 Score=85.83 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=44.7
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++|+.|+++|++++|+||++... +...++.+++..+|. +.|++++
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~-~~~~l~~~~l~~~~~-d~i~~~~ 152 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREM-MDVVVPLAAAQGYRP-DHVVTTD 152 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHHhhcCCCc-eEEEcCC
Confidence 3578999999999999999999999999888 588899988877641 6777664
No 37
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.32 E-value=1e-11 Score=84.15 Aligned_cols=58 Identities=24% Similarity=0.431 Sum_probs=50.5
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
+|++++|+||||++. . ..+.+...+.|++++++|++++++|||+... +...++.+++.
T Consensus 3 ~kli~~DlDGTLl~~------~---~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~ 60 (270)
T PRK10513 3 IKLIAIDMDGTLLLP------D---HTISPAVKQAIAAARAKGVNVVLTTGRPYAG-VHRYLKELHME 60 (270)
T ss_pred eEEEEEecCCcCcCC------C---CccCHHHHHHHHHHHHCCCEEEEecCCChHH-HHHHHHHhCCC
Confidence 689999999999972 1 2356889999999999999999999999998 58899999875
No 38
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.32 E-value=7.4e-12 Score=82.95 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=51.1
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
+|++++|+||||++. . ..+.|.+.+.|++++++|++++++|||+... +...++.+++..+
T Consensus 3 ~kli~~DlDGTLl~~------~---~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~ 62 (230)
T PRK01158 3 IKAIAIDIDGTITDK------D---RRLSLKAVEAIRKAEKLGIPVILATGNVLCF-ARAAAKLIGTSGP 62 (230)
T ss_pred eeEEEEecCCCcCCC------C---CccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCCc
Confidence 689999999999973 1 2355789999999999999999999999988 5888899988653
No 39
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.31 E-value=3.9e-12 Score=81.89 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=42.6
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++|+ .++|++|+++ ++++|+||++... ++..++++++.++| +.|++++
T Consensus 87 ~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~-~~~~l~~~~l~~~f--d~i~~~~ 136 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGR-RPMAVGTGSESAI-AEALLAHLGLRRYF--DAVVAAD 136 (188)
T ss_pred CCCccH-HHHHHHHHhC-CCEEEEcCCchHH-HHHHHHhCCcHhHc--eEEEehh
Confidence 456775 5899999876 8999999999888 69999999999999 8888875
No 40
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.31 E-value=9.1e-12 Score=84.14 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=53.6
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeC---CCchhHHHHHHHHcCCCCccccCeee
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR---SPAPDIAKTFLHKLGIHSMFVPMVRL 98 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~---~~~~~i~~~~l~~~~l~~~~~~~~i~ 98 (103)
+++++||+||||++. ..+.|++.++|++|+++|++++++|| ++... ....++.+|++... +.|+
T Consensus 1 ~~~~~~D~DGtl~~~----------~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~-~~~~l~~~g~~~~~--~~ii 67 (249)
T TIGR01457 1 YKGYLIDLDGTMYKG----------KERIPEAETFVHELQKRDIPYLFVTNNSTRTPES-VAEMLASFDIPATL--ETVF 67 (249)
T ss_pred CCEEEEeCCCceEcC----------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCCCh--hhEe
Confidence 468999999999973 34678999999999999999999997 45666 47778889986544 7777
Q ss_pred ec
Q 034147 99 SC 100 (103)
Q Consensus 99 ~~ 100 (103)
++
T Consensus 68 t~ 69 (249)
T TIGR01457 68 TA 69 (249)
T ss_pred eH
Confidence 65
No 41
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.31 E-value=8.9e-12 Score=85.33 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=52.5
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH--HHHHHHHcCCCCccccCeeee
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRLS 99 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i--~~~~l~~~~l~~~~~~~~i~~ 99 (103)
+++++||+||||++. ..++||+.++|++|+++|++++++||++.... ....++.+|+.... +.|++
T Consensus 2 ~~~~~~D~DGtl~~~----------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~--~~i~t 69 (279)
T TIGR01452 2 AQGFIFDCDGVLWLG----------ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLA--EQLFS 69 (279)
T ss_pred ccEEEEeCCCceEcC----------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh--hhEec
Confidence 678999999999972 45789999999999999999999999764321 13467788886443 67776
Q ss_pred c
Q 034147 100 C 100 (103)
Q Consensus 100 ~ 100 (103)
+
T Consensus 70 s 70 (279)
T TIGR01452 70 S 70 (279)
T ss_pred H
Confidence 5
No 42
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.30 E-value=1.1e-11 Score=83.97 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=51.0
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
+|++++|+||||++. . ..+.|...+.|++++++|++++++|||+... +...++.+++..
T Consensus 3 ~kli~~DlDGTLl~~------~---~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~ 61 (272)
T PRK10530 3 YRVIALDLDGTLLTP------K---KTILPESLEALARAREAGYKVIIVTGRHHVA-IHPFYQALALDT 61 (272)
T ss_pred ccEEEEeCCCceECC------C---CccCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCC
Confidence 689999999999973 1 2356788999999999999999999999988 588899998764
No 43
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.30 E-value=1.2e-11 Score=81.53 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=51.3
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
+|++++|+||||++. ...+.+...+.|++|+++|++++++|||+... +....+.+++..+
T Consensus 1 ik~v~~DlDGTLl~~---------~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~-~~~~~~~l~~~~~ 60 (215)
T TIGR01487 1 IKLVAIDIDGTLTEP---------NRMISERAIEAIRKAEKKGIPVSLVTGNTVPF-ARALAVLIGTSGP 60 (215)
T ss_pred CcEEEEecCCCcCCC---------CcccCHHHHHHHHHHHHCCCEEEEEcCCcchh-HHHHHHHhCCCCc
Confidence 478999999999972 12466899999999999999999999999988 5888999988643
No 44
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.30 E-value=1.2e-11 Score=84.13 Aligned_cols=60 Identities=25% Similarity=0.328 Sum_probs=51.9
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
+|++++|+||||++. . ..+.+...+.|++++++|++++++|||+... +...++.+++..+
T Consensus 2 ~kli~~DlDGTLl~~------~---~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~ 61 (272)
T PRK15126 2 ARLAAFDMDGTLLMP------D---HHLGEKTLSTLARLRERDITLTFATGRHVLE-MQHILGALSLDAY 61 (272)
T ss_pred ccEEEEeCCCcCcCC------C---CcCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCCCc
Confidence 689999999999973 1 2366889999999999999999999999988 5889999998654
No 45
>PRK10976 putative hydrolase; Provisional
Probab=99.30 E-value=1e-11 Score=84.04 Aligned_cols=60 Identities=33% Similarity=0.359 Sum_probs=51.4
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
+|++++|+||||++. . ..+.+...+.|++++++|++++++|||+... +...++.+++..+
T Consensus 2 ikli~~DlDGTLl~~------~---~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~ 61 (266)
T PRK10976 2 YQVVASDLDGTLLSP------D---HTLSPYAKETLKLLTARGIHFVFATGRHHVD-VGQIRDNLEIKSY 61 (266)
T ss_pred ceEEEEeCCCCCcCC------C---CcCCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCCe
Confidence 689999999999973 1 2356789999999999999999999999988 5888999988643
No 46
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.29 E-value=9.5e-12 Score=77.88 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=51.1
Q ss_pred ceEEEeCCCCcccccc-cccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc---------------hhHHHHHHHHc
Q 034147 23 RLVVFDLDYTLWPFYC-ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKL 86 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~-~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~---------------~~i~~~~l~~~ 86 (103)
++++||+||||++..+ .+.......+++||+.++|+.|+++|++++|+||++. .. +...++++
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 79 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGR-VLELLRQL 79 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHH-HHHHHHhC
Confidence 4689999999998653 1222223456899999999999999999999999874 34 36678888
Q ss_pred CCC
Q 034147 87 GIH 89 (103)
Q Consensus 87 ~l~ 89 (103)
++.
T Consensus 80 ~l~ 82 (147)
T TIGR01656 80 GVA 82 (147)
T ss_pred CCc
Confidence 875
No 47
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.29 E-value=1.2e-11 Score=84.40 Aligned_cols=62 Identities=39% Similarity=0.519 Sum_probs=52.5
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
+++++++|+||||++. . ....+++.++|++|+++|++++++||++... +...++.+++..++
T Consensus 3 ~~kli~~DlDGTLl~~------~---~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~-~~~~~~~l~l~~~~ 64 (273)
T PRK00192 3 MKLLVFTDLDGTLLDH------H---TYSYEPAKPALKALKEKGIPVIPCTSKTAAE-VEVLRKELGLEDPF 64 (273)
T ss_pred cceEEEEcCcccCcCC------C---CcCcHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCCCE
Confidence 3789999999999973 1 2355789999999999999999999999888 58999999987543
No 48
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.29 E-value=9.9e-12 Score=84.33 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=53.3
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--HHHHHHHHcCCCCccccCeeee
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVRLS 99 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--i~~~~l~~~~l~~~~~~~~i~~ 99 (103)
.++++||+|||||+. ......+.|++.+++++|+++|++++++||++... .....++.+|++ +..+.|++
T Consensus 1 ~k~i~~D~DGtl~~~------~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~t 72 (257)
T TIGR01458 1 VKGVLLDISGVLYIS------DAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFT 72 (257)
T ss_pred CCEEEEeCCCeEEeC------CCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEc
Confidence 368999999999973 11111278999999999999999999999887553 135667778875 34477776
Q ss_pred c
Q 034147 100 C 100 (103)
Q Consensus 100 ~ 100 (103)
+
T Consensus 73 s 73 (257)
T TIGR01458 73 P 73 (257)
T ss_pred H
Confidence 5
No 49
>PLN02954 phosphoserine phosphatase
Probab=99.29 E-value=8.4e-12 Score=82.47 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=38.7
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
..++||+.++++.|+++|++++|+|++.... ++..++++|+.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~~l~~~gi~ 124 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQM-IAPVAAILGIP 124 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHhCCC
Confidence 4588999999999999999999999999888 69999999986
No 50
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.28 E-value=1.8e-11 Score=78.92 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=44.1
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
++|+++||.||||.-....+........++||+.++|++|+++|++++|+||++
T Consensus 2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 578999999999875432333334456799999999999999999999999886
No 51
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.27 E-value=1.5e-11 Score=85.70 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=56.4
Q ss_pred CCceEEEeCCCCccccccccc--ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH----cCCCCcc
Q 034147 21 LPRLVVFDLDYTLWPFYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK----LGIHSMF 92 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~--~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~----~~l~~~~ 92 (103)
.+|++++|+|+|||.+-..-+ .......+++++.++|+.|+++|++++|+|+++... +...+++ +++.++|
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~-a~~~l~~~~~~~~~~~~f 78 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDD-AKKVFERRKDFILQAEDF 78 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHH-HHHHHHhCccccCcHHHe
Confidence 479999999999998531100 111223468999999999999999999999999887 7999999 8888777
No 52
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.27 E-value=1.9e-11 Score=84.02 Aligned_cols=61 Identities=25% Similarity=0.283 Sum_probs=51.8
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
+|+|++|+||||+++. ...++.+.+.|++|+++|++++++||++... +..+.+.+++..+|
T Consensus 1 ~KLIftDLDGTLLd~~---------~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~e-v~~l~~~Lgl~~p~ 61 (302)
T PRK12702 1 MRLVLSSLDGSLLDLE---------FNSYGAARQALAALERRSIPLVLYSLRTRAQ-LEHLCRQLRLEHPF 61 (302)
T ss_pred CcEEEEeCCCCCcCCC---------CcCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCCeE
Confidence 4789999999999841 2345779999999999999999999999999 49999999987543
No 53
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.27 E-value=3.3e-11 Score=77.08 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=50.3
Q ss_pred CceEEEeCCCCccccccc--ccccCCCcc-cChhHHHHHHHHHHCCCeEEEEeCCCch------------hHHHHHHHHc
Q 034147 22 PRLVVFDLDYTLWPFYCE--CCYEDEIPY-LYPHAKGILEALKEKGIHVAVASRSPAP------------DIAKTFLHKL 86 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~--~~~~~~~~~-~~~g~~~~l~~l~~~G~~v~i~T~~~~~------------~i~~~~l~~~ 86 (103)
.++++||+||||+...+. +.......+ ++||+.++|++|+++|++++|+||++.. . +...++++
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~-i~~~l~~~ 91 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNK-IEAFLEKL 91 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHH-HHHHHHHc
Confidence 688999999999974321 011111222 6899999999999999999999998753 3 36788999
Q ss_pred CCC
Q 034147 87 GIH 89 (103)
Q Consensus 87 ~l~ 89 (103)
|+.
T Consensus 92 gl~ 94 (166)
T TIGR01664 92 KVP 94 (166)
T ss_pred CCC
Confidence 984
No 54
>PRK09449 dUMP phosphatase; Provisional
Probab=99.25 E-value=1.3e-11 Score=81.56 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=45.1
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++|++|+ +|++++|+||++... ++..++++|+..+| +.+++++
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~-~~~~l~~~~l~~~f--d~v~~~~ 144 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTEL-QQVRLERTGLRDYF--DLLVISE 144 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHH-HHHHHHhCChHHHc--CEEEEEC
Confidence 358899999999999 579999999999877 68889999999999 8888775
No 55
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.25 E-value=3.2e-11 Score=82.16 Aligned_cols=60 Identities=28% Similarity=0.361 Sum_probs=51.4
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
+.++++++|+||||++. . ....+...+.|++++++|++++++|||+... +...++.+++.
T Consensus 5 ~~~~lI~~DlDGTLL~~------~---~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~-i~~~~~~l~~~ 64 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDS------H---TYDWQPAAPWLTRLREAQVPVILCSSKTAAE-MLPLQQTLGLQ 64 (271)
T ss_pred CCCeEEEEeCccCCcCC------C---CcCcHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHhCCC
Confidence 56899999999999972 1 1245678999999999999999999999988 59999999985
No 56
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.24 E-value=3.3e-11 Score=81.55 Aligned_cols=60 Identities=37% Similarity=0.624 Sum_probs=52.8
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.++++++|+||||++. .. .+.+.+.++|++++++|++++++|||+... +...++.+++..
T Consensus 2 ~~kli~~DlDGTLl~~------~~---~i~~~~~~al~~~~~~g~~v~iaTGR~~~~-~~~~~~~l~~~~ 61 (264)
T COG0561 2 MIKLLAFDLDGTLLDS------NK---TISPETKEALARLREKGVKVVLATGRPLPD-VLSILEELGLDG 61 (264)
T ss_pred CeeEEEEcCCCCccCC------CC---ccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCCc
Confidence 4789999999999973 22 266889999999999999999999999988 699999999875
No 57
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.24 E-value=2e-11 Score=78.25 Aligned_cols=49 Identities=35% Similarity=0.470 Sum_probs=42.2
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
.++||+.++|++|+++|++++|+|++.. ....++++++..+| +.+++++
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~---~~~~l~~~~l~~~f--~~~~~~~ 135 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN---APTVLEKLGLIDYF--DAIVDPA 135 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc---HHHHHHhcCcHhhC--cEEEehh
Confidence 6789999999999999999999998753 35679999999999 8887765
No 58
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.24 E-value=2.3e-11 Score=82.96 Aligned_cols=70 Identities=20% Similarity=0.126 Sum_probs=52.5
Q ss_pred CCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH--HHHHHHH-cCCCCccccC
Q 034147 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHK-LGIHSMFVPM 95 (103)
Q Consensus 19 ~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i--~~~~l~~-~~l~~~~~~~ 95 (103)
...+++++||+||||+. ...++||+.++|++|+++|++++++||++...- ....++. .+.+... +
T Consensus 5 ~~~y~~~l~DlDGvl~~----------G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~--~ 72 (269)
T COG0647 5 MDKYDGFLFDLDGVLYR----------GNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTP--D 72 (269)
T ss_pred hhhcCEEEEcCcCceEe----------CCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCH--H
Confidence 34688999999999998 466899999999999999999999998885441 1334444 3333333 6
Q ss_pred eeeec
Q 034147 96 VRLSC 100 (103)
Q Consensus 96 ~i~~~ 100 (103)
.|+++
T Consensus 73 ~i~TS 77 (269)
T COG0647 73 DIVTS 77 (269)
T ss_pred HeecH
Confidence 66664
No 59
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.24 E-value=3.7e-11 Score=78.33 Aligned_cols=50 Identities=26% Similarity=0.472 Sum_probs=43.1
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
.++||+.++|++|+++|++++|+||++. . ....++++++..+| +.+++++
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~-~-~~~~l~~~~l~~~f--d~i~~s~ 154 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDS-R-LRGLLEALGLLEYF--DFVVTSY 154 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCch-h-HHHHHHHCCcHHhc--ceEEeec
Confidence 4689999999999999999999999875 4 37789999998899 8887764
No 60
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.24 E-value=2e-11 Score=78.30 Aligned_cols=52 Identities=23% Similarity=0.232 Sum_probs=46.4
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++++.|+++|++++|+|++.... ++..++++++.++| +.+++++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f--~~i~~~~ 122 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFF-IDPVLEGIGEKDVF--IEIYSNP 122 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHH-HHHHHHHcCChhhe--eEEeccC
Confidence 4688999999999999999999999999888 59999999999888 7888654
No 61
>PRK10444 UMP phosphatase; Provisional
Probab=99.24 E-value=3.3e-11 Score=81.49 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=50.9
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHH---HHHHcCCCCccccCeee
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT---FLHKLGIHSMFVPMVRL 98 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~---~l~~~~l~~~~~~~~i~ 98 (103)
+++++||+|||||+. ..+.|++.+++++|+++|++++++||++... ... .++.+|++- ..+.|+
T Consensus 1 ~~~v~~DlDGtL~~~----------~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~-~~~~~~~l~~~G~~~--~~~~i~ 67 (248)
T PRK10444 1 IKNVICDIDGVLMHD----------NVAVPGAAEFLHRILDKGLPLVLLTNYPSQT-GQDLANRFATAGVDV--PDSVFY 67 (248)
T ss_pred CcEEEEeCCCceEeC----------CeeCccHHHHHHHHHHCCCeEEEEeCCCCCC-HHHHHHHHHHcCCCC--CHhhEe
Confidence 478999999999973 2578999999999999999999999998754 244 445567642 336666
Q ss_pred ec
Q 034147 99 SC 100 (103)
Q Consensus 99 ~~ 100 (103)
++
T Consensus 68 ts 69 (248)
T PRK10444 68 TS 69 (248)
T ss_pred cH
Confidence 65
No 62
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.23 E-value=1.1e-11 Score=77.97 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=48.9
Q ss_pred CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
...+++||+.++|+.|+++|++++++||++... +...++++++..+| +.+++++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~-~~~~l~~~~~~~~f--~~i~~~~ 127 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRER-IERVLERLGLDDYF--DEIISSD 127 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHH-HHHHHHHTTHGGGC--SEEEEGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCccc-cccccccccccccc--ccccccc
Confidence 567899999999999999999999999999887 58999999999888 8888775
No 63
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.23 E-value=2.8e-11 Score=78.80 Aligned_cols=47 Identities=30% Similarity=0.418 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~ 102 (103)
..++|+.|+++|++++|+||++... +...++++|+..+| +.+++++.
T Consensus 111 ~~~~L~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f--~~~~~~~~ 157 (197)
T TIGR01548 111 PKGLLRELHRAPKGMAVVTGRPRKD-AAKFLTTHGLEILF--PVQIWMED 157 (197)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHH-HHHHHHHcCchhhC--CEEEeecC
Confidence 4889999999999999999999888 69999999999999 88887653
No 64
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.23 E-value=2.4e-11 Score=76.77 Aligned_cols=68 Identities=21% Similarity=0.156 Sum_probs=50.3
Q ss_pred CceEEEeCCCCcccccccccccCCCc---ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIP---YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~---~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
+++++||+||||++........++.. .+.++ .++++|+++|++++|+||++... +...++++|+..+|
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~~-~~~~l~~~gi~~~~ 71 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAKL-VEDRCKTLGITHLY 71 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCHH-HHHHHHHcCCCEEE
Confidence 47899999999998432111111111 12233 38999999999999999999888 69999999998776
No 65
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.22 E-value=2.9e-11 Score=79.54 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=45.9
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++|++|+++ ++++++||+.... ++..++++++..+| +.+++++
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~-~~~~l~~~~l~~~f--d~i~~~~ 146 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRET-QYKRLRKSGLFPFF--DDIFVSE 146 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchHH-HHHHHHHCCcHhhc--CEEEEcC
Confidence 46889999999999999 9999999999888 59999999999999 8888765
No 66
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.22 E-value=3.9e-11 Score=76.44 Aligned_cols=66 Identities=17% Similarity=0.020 Sum_probs=51.0
Q ss_pred ceEEEeCCCCcccccc--cccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC---------------chhHHHHHHHH
Q 034147 23 RLVVFDLDYTLWPFYC--ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---------------APDIAKTFLHK 85 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~--~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~---------------~~~i~~~~l~~ 85 (103)
++++||.||||++..+ ..........++||+.++|++|+++|++++|+||++ ... +...+++
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~-~~~~l~~ 80 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNL-MLQIFRS 80 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHH
Confidence 6799999999998322 111222345789999999999999999999999973 334 4778899
Q ss_pred cCCC
Q 034147 86 LGIH 89 (103)
Q Consensus 86 ~~l~ 89 (103)
+|+.
T Consensus 81 ~gl~ 84 (161)
T TIGR01261 81 QGII 84 (161)
T ss_pred CCCc
Confidence 9985
No 67
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.22 E-value=6.1e-11 Score=76.20 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=42.1
Q ss_pred ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
++++||.||||+... .+........++||+.++|++|+++|++++|+||++.
T Consensus 2 ~~~~~D~Dgtl~~~~-~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 2 KAIFLDRDGTINIDH-GYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CEEEEeCCCCEeCCC-CCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 679999999999522 1122334567899999999999999999999999984
No 68
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.20 E-value=6.1e-11 Score=79.09 Aligned_cols=56 Identities=29% Similarity=0.423 Sum_probs=47.7
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
+++||+||||++. ....+++.++|++++++|++++++||++... +...++.+++..
T Consensus 1 li~~DlDGTLl~~----------~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~-~~~~~~~lg~~~ 56 (225)
T TIGR02461 1 VIFTDLDGTLLPP----------GYEPGPAREALEELKDLGFPIVFVSSKTRAE-QEYYREELGVEP 56 (225)
T ss_pred CEEEeCCCCCcCC----------CCCchHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCC
Confidence 4899999999962 1244679999999999999999999999888 588899999754
No 69
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.19 E-value=6.8e-11 Score=75.87 Aligned_cols=72 Identities=17% Similarity=0.071 Sum_probs=58.7
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
+.+++++||+||||+|+...++..+...+-| ..-...++.|+++|++++|+||++... ++..++++++..+|
T Consensus 5 ~~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~-~~~~l~~lgi~~~f 77 (169)
T TIGR02726 5 KNIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGA-VRHRAEELKIKRFH 77 (169)
T ss_pred ccCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHH-HHHHHHHCCCcEEE
Confidence 4589999999999999866666666544333 223457899999999999999999888 69999999998777
No 70
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.18 E-value=5.1e-11 Score=74.85 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=60.0
Q ss_pred CCCCceEEEeCCCCcccccccccccCCCcccChhHH--HHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAK--GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 19 ~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~--~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
.+++|+++||+||||+|+..++...++..+.|. +. ..++.|.+.|++++|+|++..+. ++.+.+.+|+.+++
T Consensus 5 a~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFn-v~DG~Gik~l~~~Gi~vAIITGr~s~i-ve~Ra~~LGI~~~~ 78 (170)
T COG1778 5 AKNIKLLILDVDGVLTDGKLYYDENGEEIKAFN-VRDGHGIKLLLKSGIKVAIITGRDSPI-VEKRAKDLGIKHLY 78 (170)
T ss_pred hhhceEEEEeccceeecCeEEEcCCCceeeeee-ccCcHHHHHHHHcCCeEEEEeCCCCHH-HHHHHHHcCCceee
Confidence 457899999999999998887777666665552 22 37899999999999999999888 69999999998766
No 71
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.17 E-value=2.7e-10 Score=71.44 Aligned_cols=76 Identities=18% Similarity=0.047 Sum_probs=57.4
Q ss_pred CceEEEeCCCCccccccc----ccc-------------cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 22 PRLVVFDLDYTLWPFYCE----CCY-------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~----~~~-------------~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
..++++|+||||+..... +.. ......++||+.++|++|+ ++++++|+|++.... ++..++
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~-~~~il~ 79 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMY-ADPVLD 79 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHH-HHHHHH
Confidence 356899999999985311 100 0122357899999999999 579999999999988 699999
Q ss_pred HcCCCC-ccccCeeeecc
Q 034147 85 KLGIHS-MFVPMVRLSCC 101 (103)
Q Consensus 85 ~~~l~~-~~~~~~i~~~~ 101 (103)
++++.. +| +.|++++
T Consensus 80 ~l~~~~~~f--~~i~~~~ 95 (148)
T smart00577 80 LLDPKKYFG--YRRLFRD 95 (148)
T ss_pred HhCcCCCEe--eeEEECc
Confidence 999854 45 6777765
No 72
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.16 E-value=7.2e-11 Score=73.84 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=43.7
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
....+||+.++|+.|+++|++++|+||++... +...++++ +..+| +.+++++
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~~-l~~~f--~~i~~~~ 113 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRA-QKLLLRKH-LGDYF--DLILGSD 113 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHH-HHHHHHHH-HHhcC--cEEEecC
Confidence 34467999999999999999999999999888 58888887 77777 6777654
No 73
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.16 E-value=1.3e-10 Score=78.42 Aligned_cols=57 Identities=37% Similarity=0.573 Sum_probs=48.6
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
++++|+||||++. . ..+.+...+.|++++++|++++++|||+... +...++.+++..
T Consensus 1 li~~DlDGTLl~~------~---~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~~~~ 57 (256)
T TIGR00099 1 LIFIDLDGTLLND------D---HTISPSTKEALAKLREKGIKVVLATGRPYKE-VKNILKELGLDT 57 (256)
T ss_pred CEEEeCCCCCCCC------C---CccCHHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCCC
Confidence 4789999999972 1 2356889999999999999999999999888 588899998863
No 74
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.15 E-value=9.1e-11 Score=74.85 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=42.4
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++|++|+++|++++++||++... .....++++..+| +.+++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~--~~~~~~~~l~~~f--~~i~~~~ 134 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH--AVLVQELGLRDLF--DVVIFSG 134 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHhcCCHHHC--CEEEEcC
Confidence 5688999999999999999999999999654 4445569998888 8877654
No 75
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.15 E-value=1e-10 Score=77.43 Aligned_cols=44 Identities=20% Similarity=0.118 Sum_probs=38.4
Q ss_pred CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
....++||+.++|+.|+++|++++|+|++.... ++..++++ +..
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~-~~~ 114 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFF-VYPLLQGL-IPK 114 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHH-HHHHHHHh-CCc
Confidence 345789999999999999999999999999887 59999987 643
No 76
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.15 E-value=5.8e-11 Score=78.67 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=42.0
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~ 93 (103)
.+++||+.++++.++++|++++|+|+++... ++++.+.+|++..+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~l-v~~ia~~lg~d~~~a 121 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFL-VEPIAERLGIDYVVA 121 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHH-HHHHHHHhCCchhee
Confidence 6789999999999999999999999999776 799999999987653
No 77
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.15 E-value=1.1e-10 Score=76.96 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=47.1
Q ss_pred EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
++||+||||++. . ..+.+...+.|++++++|++++++|||+... +...++.+++..
T Consensus 1 i~~DlDGTLl~~------~---~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~-~~~~~~~l~~~~ 56 (225)
T TIGR01482 1 IASDIDGTLTDP------N---RAINESALEAIRKAESVGIPVVLVTGNSVQF-ARALAKLIGTPD 56 (225)
T ss_pred CeEeccCccCCC------C---cccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCC
Confidence 589999999973 1 2356788999999999999999999999988 588889888654
No 78
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.14 E-value=1.1e-10 Score=74.42 Aligned_cols=47 Identities=30% Similarity=0.385 Sum_probs=41.4
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~ 93 (103)
...++||+.+++++++++|++++|+|++.... ++..++++|+..++.
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~-i~~~~~~~g~~~~~~ 117 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGFDFF-VEPVAEKLGIDDVFA 117 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCchhee
Confidence 34578999999999999999999999999887 599999999987653
No 79
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.14 E-value=6.1e-10 Score=68.29 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=47.6
Q ss_pred ceEEEeCCCCcccccccccccC--CCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--------------HHHHHHHHc
Q 034147 23 RLVVFDLDYTLWPFYCECCYED--EIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------IAKTFLHKL 86 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~--~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--------------i~~~~l~~~ 86 (103)
|+++||+||||... ..+ ....+.+++.+.+++++++|+.++++|||+... ++..++.+.
T Consensus 2 K~i~~DiDGTL~~~-----~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~ 76 (126)
T TIGR01689 2 KRLVMDLDNTITLT-----ENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQH 76 (126)
T ss_pred CEEEEeCCCCcccC-----CCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHc
Confidence 68999999999862 111 123477899999999999999999999998653 246777777
Q ss_pred CCC
Q 034147 87 GIH 89 (103)
Q Consensus 87 ~l~ 89 (103)
+++
T Consensus 77 ~ip 79 (126)
T TIGR01689 77 NVP 79 (126)
T ss_pred CCC
Confidence 764
No 80
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.14 E-value=1.5e-10 Score=76.61 Aligned_cols=56 Identities=32% Similarity=0.463 Sum_probs=48.4
Q ss_pred EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
+++|+||||++. . ..+.+...++|++++++|++++++|||+... +...++.+++..
T Consensus 1 i~~DlDGTLl~~------~---~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~~~~ 56 (254)
T PF08282_consen 1 IFSDLDGTLLNS------D---GKISPETIEALKELQEKGIKLVIATGRSYSS-IKRLLKELGIDD 56 (254)
T ss_dssp EEEECCTTTCST------T---SSSCHHHHHHHHHHHHTTCEEEEECSSTHHH-HHHHHHHTTHCS
T ss_pred cEEEECCceecC------C---CeeCHHHHHHHHhhcccceEEEEEccCcccc-cccccccccchh
Confidence 689999999973 2 2266899999999999999999999999988 599999998763
No 81
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.13 E-value=1.9e-10 Score=75.97 Aligned_cols=56 Identities=30% Similarity=0.383 Sum_probs=46.9
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
++++|+||||++. .. ...+...++|++++++|++++++|||+... +...++.+++.
T Consensus 1 ~i~~DlDGTLL~~------~~---~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~-~~~~~~~l~~~ 56 (221)
T TIGR02463 1 WVFSDLDGTLLDS------HS---YDWQPAAPWLTRLQEAGIPVILCTSKTAAE-VEYLQKALGLT 56 (221)
T ss_pred CEEEeCCCCCcCC------CC---CCcHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCC
Confidence 4789999999973 11 133448899999999999999999999988 59999999986
No 82
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.13 E-value=8.9e-11 Score=77.28 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=41.5
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~ 95 (103)
.+++||+.+++++++++| +++|+||+.... ++..++++|++.+|+++
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~-~~~il~~lgi~~~~an~ 113 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEF-SQPLMRQLGFPTLLCHK 113 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCChHHH-HHHHHHHcCCchhhcee
Confidence 468999999999999985 999999999887 69999999998887643
No 83
>PRK06769 hypothetical protein; Validated
Probab=99.13 E-value=2e-10 Score=73.76 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=50.8
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch--------hHHHHHHHHcCCCCc
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--------DIAKTFLHKLGIHSM 91 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~--------~i~~~~l~~~~l~~~ 91 (103)
+.++++++|.||||... ..+. ......++||+.++|++|+++|++++|+||++.. . ....++.+++..+
T Consensus 2 ~~~~~~~~d~d~~~~~~-~~~~-~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~-~~~~l~~~g~~~~ 78 (173)
T PRK06769 2 TNIQAIFIDRDGTIGGD-TTIH-YPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIAD-FVQELKGFGFDDI 78 (173)
T ss_pred CCCcEEEEeCCCcccCC-CCCC-CHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHH-HHHHHHhCCcCEE
Confidence 46899999999999532 1111 1134568999999999999999999999998731 2 1334677777665
Q ss_pred c
Q 034147 92 F 92 (103)
Q Consensus 92 ~ 92 (103)
+
T Consensus 79 ~ 79 (173)
T PRK06769 79 Y 79 (173)
T ss_pred E
Confidence 4
No 84
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.13 E-value=1.1e-10 Score=75.11 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=42.5
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..+++|+.++|++|+ .+++|+||++... +...++++|+.++| +.+++++
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~-~~~~l~~~gl~~~f--d~i~~~~ 131 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGDRAH-ARRALNRLGIEDCF--DGIFCFD 131 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCCHHH-HHHHHHHcCcHhhh--CeEEEee
Confidence 457899999999997 4799999999888 59999999999999 8888775
No 85
>PTZ00174 phosphomannomutase; Provisional
Probab=99.13 E-value=2.3e-10 Score=77.10 Aligned_cols=55 Identities=31% Similarity=0.367 Sum_probs=45.3
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~ 85 (103)
.++++++|+||||++. . ..+.|...++|++++++|++++++|||+...+ ...++.
T Consensus 4 ~~klia~DlDGTLL~~------~---~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i-~~~l~~ 58 (247)
T PTZ00174 4 KKTILLFDVDGTLTKP------R---NPITQEMKDTLAKLKSKGFKIGVVGGSDYPKI-KEQLGE 58 (247)
T ss_pred CCeEEEEECcCCCcCC------C---CCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHhh
Confidence 3789999999999973 2 23557889999999999999999999998874 665553
No 86
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.12 E-value=1.1e-10 Score=77.02 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=41.1
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccC-eeeec
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM-VRLSC 100 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~-~i~~~ 100 (103)
...++||+.++|+.| +++++|+||++... ++..++++++.++| + .++++
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~-~~~~l~~~~l~~~F--~~~v~~~ 135 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPVSK-MQHSLGKTGMLHYF--PDKLFSG 135 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcHHH-HHHHHHhcChHHhC--cceEeeH
Confidence 356889999999998 48999999999887 59999999999998 5 46565
No 87
>PLN02887 hydrolase family protein
Probab=99.12 E-value=2.4e-10 Score=85.12 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=51.5
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++|++++|+||||++. . ..+.+...+.|++++++|+.++++|||+... +...++.+++.
T Consensus 306 ~~iKLIa~DLDGTLLn~------d---~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~-i~~~l~~L~l~ 365 (580)
T PLN02887 306 PKFSYIFCDMDGTLLNS------K---SQISETNAKALKEALSRGVKVVIATGKARPA-VIDILKMVDLA 365 (580)
T ss_pred cCccEEEEeCCCCCCCC------C---CccCHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHhCcc
Confidence 46899999999999973 1 2366889999999999999999999999988 58888988864
No 88
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.11 E-value=1.4e-10 Score=75.56 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=41.3
Q ss_pred CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (103)
Q Consensus 45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~ 93 (103)
....++||+.++|+.|+++ ++++|+|++.... ++..++++++..+|.
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~-~~~~l~~~gl~~~f~ 111 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEF-AGPLMRQLGWPTLFC 111 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHH-HHHHHHHcCCchhhc
Confidence 3445789999999999999 9999999999888 699999999987774
No 89
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=2.4e-10 Score=89.97 Aligned_cols=50 Identities=32% Similarity=0.377 Sum_probs=45.0
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC-CccccCeeeecc
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVPMVRLSCC 101 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~-~~~~~~~i~~~~ 101 (103)
++||+.++|++|+++|++++|+||+.... ++..++++++. .+| +.+++++
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~-~~~~L~~~gl~~~~F--d~iv~~~ 212 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIK-VDANLAAAGLPLSMF--DAIVSAD 212 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHcCCChhHC--CEEEECc
Confidence 68999999999999999999999999888 58999999996 678 8888775
No 90
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.10 E-value=1.6e-10 Score=75.14 Aligned_cols=46 Identities=26% Similarity=0.361 Sum_probs=41.1
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcccc
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~ 94 (103)
.++|++.+++++++++|++++|+|+++... ++..++++|+..+|..
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~-v~~~~~~lg~~~~~~~ 132 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTIL-VKPLARILGIDNAIGT 132 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHcCCcceEec
Confidence 578999999999999999999999999877 6999999999877643
No 91
>PRK11590 hypothetical protein; Provisional
Probab=99.10 E-value=3.1e-10 Score=74.88 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=35.5
Q ss_pred ccChhHHHHH-HHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 48 YLYPHAKGIL-EALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 48 ~~~~g~~~~l-~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
.++||+.+.| ++++++|++++|+||++... ++..++.+++
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~-~~~il~~l~~ 135 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPL-VEQVYFDTPW 135 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHH-HHHHHHHccc
Confidence 4689999999 57888999999999999877 6999999885
No 92
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.09 E-value=3.5e-10 Score=76.39 Aligned_cols=57 Identities=32% Similarity=0.420 Sum_probs=47.4
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
++++|+||||++. .. ...+...+++++++++|++++++|||+... +...++.+++..
T Consensus 1 li~~DlDGTll~~------~~---~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~-~~~~~~~~~~~~ 57 (256)
T TIGR01486 1 WIFTDLDGTLLDP------HG---YDWGPAKEVLERLQELGIPVIPCTSKTAAE-VEYLRKELGLED 57 (256)
T ss_pred CEEEcCCCCCcCC------CC---cCchHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCC
Confidence 4789999999973 11 133468999999999999999999999988 599999999854
No 93
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.08 E-value=3e-10 Score=74.51 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=40.3
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhH-HHHHHHHcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDI-AKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i-~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
...++||+.++|++|+++|++++|+||+..... ....+..+++..+| +.+++++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~f--d~v~~s~ 146 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALF--DAVVESC 146 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhC--CEEEEee
Confidence 356899999999999999999999999874321 12234456777888 7777654
No 94
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.08 E-value=3.1e-10 Score=73.51 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=51.8
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccCh-hHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYP-HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~-g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
+.+++++||+||||++..............+. .-...++.|+++|++++|+||++... +...++++++..+|
T Consensus 19 ~~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~-v~~~l~~lgl~~~f 91 (183)
T PRK09484 19 ENIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKL-VEDRMTTLGITHLY 91 (183)
T ss_pred hCceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcHH-HHHHHHHcCCceee
Confidence 35999999999999985221111121121111 11257889999999999999999888 69999999998776
No 95
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.07 E-value=2.6e-10 Score=79.74 Aligned_cols=46 Identities=24% Similarity=0.171 Sum_probs=40.3
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
..+++||+.++++.|++.|++++|+||+.... ++...+++++...+
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~-~~~l~~~Lgld~~~ 224 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYF-ADYLRDKLRLDAAV 224 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchh-HHHHHHHcCCCeEE
Confidence 35689999999999999999999999999877 68888999987644
No 96
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.07 E-value=2.9e-10 Score=73.90 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=37.4
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc--cCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV--PMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~--~~~i~~~~ 101 (103)
..++||+.++|++|++++ +++++|+++... .....+.+++..+|. .+.+++++
T Consensus 73 ~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~-~~~~~~~~~l~~~f~~~f~~i~~~~ 127 (197)
T PHA02597 73 LSAYDDALDVINKLKEDY-DFVAVTALGDSI-DALLNRQFNLNALFPGAFSEVLMCG 127 (197)
T ss_pred ccCCCCHHHHHHHHHhcC-CEEEEeCCccch-hHHHHhhCCHHHhCCCcccEEEEec
Confidence 468999999999999974 677788877555 355667787765441 14555543
No 97
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=99.05 E-value=1.6e-09 Score=73.94 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=63.0
Q ss_pred cCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCee
Q 034147 18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR 97 (103)
Q Consensus 18 ~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i 97 (103)
.-..+.+++||+|.||+. +.+....+.|.+.+.|..|++.|..+++.|.++++. +...++.+++.++| +.|
T Consensus 118 ~~~~phVIVfDlD~TLIt------d~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eH-V~~sl~~~~L~~~F--d~i 188 (297)
T PF05152_consen 118 VWEPPHVIVFDLDSTLIT------DEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREH-VRHSLKELKLEGYF--DII 188 (297)
T ss_pred cCCCCcEEEEECCCcccc------cCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHH-HHHHHHHhCCcccc--EEE
Confidence 344689999999999996 334334467889999999999999999999999999 69999999999999 888
Q ss_pred eec
Q 034147 98 LSC 100 (103)
Q Consensus 98 ~~~ 100 (103)
+++
T Consensus 189 i~~ 191 (297)
T PF05152_consen 189 ICG 191 (297)
T ss_pred EeC
Confidence 775
No 98
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.05 E-value=4.7e-10 Score=73.99 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=45.9
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++|++.+.|+.++++ ++++++||+.... ....++++|+.++| +.+++++
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~-~~~~l~~~gl~~~F--d~v~~s~ 148 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPH-QERKLRQLGLLDYF--DAVFISE 148 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHH-HHHHHHHcCChhhh--heEEEec
Confidence 57889999999999998 9999999988777 69999999999999 8888775
No 99
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=99.04 E-value=7.3e-10 Score=83.35 Aligned_cols=62 Identities=27% Similarity=0.376 Sum_probs=51.3
Q ss_pred CCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 19 ~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
...++++++|+||||++. .. ...+...+.|++++++|++++++||++... +...++.+++..
T Consensus 413 ~~~~KLIfsDLDGTLLd~------d~---~i~~~t~eAL~~L~ekGI~~VIATGRs~~~-i~~l~~~Lgl~~ 474 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNP------LT---YSYSTALDALRLLKDKELPLVFCSAKTMGE-QDLYRNELGIKD 474 (694)
T ss_pred CceeeEEEEECcCCCcCC------CC---ccCHHHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCCCC
Confidence 345789999999999973 11 244668999999999999999999999988 588999998754
No 100
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.04 E-value=5e-10 Score=77.06 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=61.0
Q ss_pred CCceEEEeCCCCcccccc----cccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC-ccccC
Q 034147 21 LPRLVVFDLDYTLWPFYC----ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPM 95 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~----~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~-~~~~~ 95 (103)
..+++++|+|||+.+... .|.. .....++|++.++++.|+++|++++++||++... ++..++.+++.+ +| +
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~-~~~~l~~l~~~~~~f--~ 232 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRSPYDWTK-VKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC-EEDTVEWLRQTDIWF--D 232 (300)
T ss_pred CCCEEEEECCCcCcCCCCCCccchhh-cccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh-HHHHHHHHHHcCCch--h
Confidence 367899999999997422 1111 1135689999999999999999999999999888 699999999886 77 6
Q ss_pred eeeecc
Q 034147 96 VRLSCC 101 (103)
Q Consensus 96 ~i~~~~ 101 (103)
.+++.+
T Consensus 233 ~i~~~~ 238 (300)
T PHA02530 233 DLIGRP 238 (300)
T ss_pred hhhCCc
Confidence 666654
No 101
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.03 E-value=2.8e-09 Score=71.76 Aligned_cols=78 Identities=19% Similarity=0.142 Sum_probs=56.7
Q ss_pred CceEEEeCCCCccccccc--c----------------------c-ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC--
Q 034147 22 PRLVVFDLDYTLWPFYCE--C----------------------C-YEDEIPYLYPHAKGILEALKEKGIHVAVASRSP-- 74 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~--~----------------------~-~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~-- 74 (103)
+-.++||+|||+++...+ + . .......++||+.++|++|+++|++++++|||+
T Consensus 63 p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~ 142 (237)
T PRK11009 63 PMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTAT 142 (237)
T ss_pred CcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 457999999999973111 0 0 012346688999999999999999999999975
Q ss_pred -chhHHHHHHHHcCC--CCccccCeeeecc
Q 034147 75 -APDIAKTFLHKLGI--HSMFVPMVRLSCC 101 (103)
Q Consensus 75 -~~~i~~~~l~~~~l--~~~~~~~~i~~~~ 101 (103)
....++.+++++|+ .++| ..+++++
T Consensus 143 k~~~t~~~Llk~~gip~~~~f--~vil~gd 170 (237)
T PRK11009 143 KTETVSKTLADDFHIPADNMN--PVIFAGD 170 (237)
T ss_pred ccHHHHHHHHHHcCCCcccce--eEEEcCC
Confidence 22224666667999 6777 6777765
No 102
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.02 E-value=2.6e-09 Score=72.95 Aligned_cols=80 Identities=16% Similarity=0.073 Sum_probs=57.4
Q ss_pred CCCCceEEEeCCCCcccccccc---------------c--ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH--H
Q 034147 19 ENLPRLVVFDLDYTLWPFYCEC---------------C--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--A 79 (103)
Q Consensus 19 ~~~~~~~~fD~DGTL~~~~~~~---------------~--~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i--~ 79 (103)
...+.+|+||+|+|+++...+. + .......++||+.++++.|+++|++++++||++.... +
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T 151 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT 151 (266)
T ss_pred CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence 3457899999999998744221 0 1123456899999999999999999999999884431 3
Q ss_pred HHHHHHcCCCCccccCeeee
Q 034147 80 KTFLHKLGIHSMFVPMVRLS 99 (103)
Q Consensus 80 ~~~l~~~~l~~~~~~~~i~~ 99 (103)
...++.+|+...+ .+.++.
T Consensus 152 ~~~Lkk~Gi~~~~-~d~lll 170 (266)
T TIGR01533 152 LKNLKRFGFPQAD-EEHLLL 170 (266)
T ss_pred HHHHHHcCcCCCC-cceEEe
Confidence 4778889987543 144443
No 103
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.01 E-value=1.1e-09 Score=72.42 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=34.7
Q ss_pred ccChhHHHHHH-HHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 48 YLYPHAKGILE-ALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 48 ~~~~g~~~~l~-~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
.++|++.+.|+ +++++|++++|+|+++... ++...+..++
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~-~~~ia~~~~~ 134 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPL-VEAVYFDSNF 134 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHH-HHHHHHhccc
Confidence 57999999996 7888999999999999877 6888888655
No 104
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.01 E-value=1.5e-09 Score=68.81 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=43.9
Q ss_pred eEEEeCCCCccccccc---ccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHH---HHHHH
Q 034147 24 LVVFDLDYTLWPFYCE---CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK---TFLHK 85 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~---~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~---~~l~~ 85 (103)
++++|+||||++.+.- ....+ .....|++.+++++++++|++++++|||+... +. .+++.
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~-~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~-~~~t~~~l~~ 66 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIG-KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQ-ADRTRSYLSQ 66 (157)
T ss_pred CEEEecCCCCcccccccccccccc-cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHH-HHHHHHHHHH
Confidence 4799999999984210 00001 12467999999999999999999999999665 33 56666
No 105
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.00 E-value=2.1e-09 Score=68.84 Aligned_cols=62 Identities=29% Similarity=0.282 Sum_probs=51.4
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC-chhHHHHHHHHcCCCC
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP-APDIAKTFLHKLGIHS 90 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~-~~~i~~~~l~~~~l~~ 90 (103)
..++++++|+||||+.. ....++|++.++|++|+++|++++++||++ ... +....+.+++..
T Consensus 23 ~~v~~vv~D~Dgtl~~~--------~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~-~~~~~~~~gl~~ 85 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYP--------DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQR-AKAVEKALGIPV 85 (170)
T ss_pred CCCCEEEEecCCccccC--------CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHH-HHHHHHHcCCEE
Confidence 46899999999999962 234689999999999999999999999998 455 577778888753
No 106
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.00 E-value=6.1e-10 Score=74.63 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=38.1
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++|++|+++ ++++++||++.. ++++|+..+| +.+++++
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~------~~~~gl~~~f--d~i~~~~ 157 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ------PELFGLGDYF--EFVLRAG 157 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch------HHHCCcHHhh--ceeEecc
Confidence 45779999999999985 999999998743 3678998999 8888765
No 107
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.00 E-value=5.3e-10 Score=72.95 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=40.9
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH-cCCCCccccCeeeecc
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPMVRLSCC 101 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~-~~l~~~~~~~~i~~~~ 101 (103)
.++||+.++|++|+++|++++|+||++... ....+.+ .++..+| +.+++++
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~-~~~~~~~~~~l~~~f--d~v~~s~ 135 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEVRAAA--DHIYLSQ 135 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhh-HHHHHhhchhHHHhc--CEEEEec
Confidence 478999999999999999999999999766 3555444 3677778 7777765
No 108
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.99 E-value=2.2e-09 Score=79.20 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=55.5
Q ss_pred CCCceEEEeCCCCccccccc--ccccCCCc-ccChhHHHHHHHHHHCCCeEEEEeCCCc------------hhHHHHHHH
Q 034147 20 NLPRLVVFDLDYTLWPFYCE--CCYEDEIP-YLYPHAKGILEALKEKGIHVAVASRSPA------------PDIAKTFLH 84 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~--~~~~~~~~-~~~~g~~~~l~~l~~~G~~v~i~T~~~~------------~~i~~~~l~ 84 (103)
...|+++||+||||+...+. +....... .++||+.+.|++|++.|++++|+||.+. .. +...++
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~k-i~~iL~ 244 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAK-IEAIVA 244 (526)
T ss_pred ccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHH-HHHHHH
Confidence 34689999999999974321 01111122 2689999999999999999999999876 34 477888
Q ss_pred HcCCCCccccCeeeecc
Q 034147 85 KLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 85 ~~~l~~~~~~~~i~~~~ 101 (103)
++|+. | +.+++++
T Consensus 245 ~lgip--f--dviia~~ 257 (526)
T TIGR01663 245 KLGVP--F--QVFIAIG 257 (526)
T ss_pred HcCCc--e--EEEEeCC
Confidence 88874 5 5565543
No 109
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.98 E-value=2.5e-09 Score=73.65 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=36.3
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
.++||+.++|++|+++|++++|+||++... ....+++++...++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~-~~~~l~~~~~~~~~ 187 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKA-VSKIVNTLLGPERA 187 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhcccccc
Confidence 578999999999999999999999999887 47778876433343
No 110
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.96 E-value=2.9e-09 Score=65.39 Aligned_cols=69 Identities=28% Similarity=0.346 Sum_probs=57.9
Q ss_pred ceEEEeCCCCcccccccc---------------cccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147 23 RLVVFDLDYTLWPFYCEC---------------CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~---------------~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~ 87 (103)
++++||.|||+||+.-.. +..+...+++|.+++++++++..|+.+..+|=+.... +-+.++.++
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k-A~~aLral~ 79 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDK-AIKALRALD 79 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHH-HHHHHHHhc
Confidence 468999999999965221 1455667899999999999999999999999777666 788899999
Q ss_pred CCCcc
Q 034147 88 IHSMF 92 (103)
Q Consensus 88 l~~~~ 92 (103)
+.++|
T Consensus 80 ~~~yF 84 (164)
T COG4996 80 LLQYF 84 (164)
T ss_pred hhhhE
Confidence 99998
No 111
>PRK08238 hypothetical protein; Validated
Probab=98.95 E-value=3.8e-09 Score=77.37 Aligned_cols=73 Identities=21% Similarity=0.094 Sum_probs=57.7
Q ss_pred ceEEEeCCCCccccccccc------------------------------------ccCCCcccChhHHHHHHHHHHCCCe
Q 034147 23 RLVVFDLDYTLWPFYCECC------------------------------------YEDEIPYLYPHAKGILEALKEKGIH 66 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~------------------------------------~~~~~~~~~~g~~~~l~~l~~~G~~ 66 (103)
.-++||+||||+..++..+ -+....++.|++.+.+++++++|++
T Consensus 11 ~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G~~ 90 (479)
T PRK08238 11 LPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAGRK 90 (479)
T ss_pred CCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCCCE
Confidence 3489999999998765522 1122234679999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 67 VAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 67 v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
++++|+++... ++..++++|+ | +.+++++
T Consensus 91 v~LaTas~~~~-a~~i~~~lGl---F--d~Vigsd 119 (479)
T PRK08238 91 LVLATASDERL-AQAVAAHLGL---F--DGVFASD 119 (479)
T ss_pred EEEEeCCCHHH-HHHHHHHcCC---C--CEEEeCC
Confidence 99999999887 6999999987 5 6676665
No 112
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.95 E-value=2.6e-09 Score=71.66 Aligned_cols=63 Identities=25% Similarity=0.320 Sum_probs=47.0
Q ss_pred EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC---chhHHHHHHHH-cCCCCccccCeeeec
Q 034147 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHK-LGIHSMFVPMVRLSC 100 (103)
Q Consensus 25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~---~~~i~~~~l~~-~~l~~~~~~~~i~~~ 100 (103)
++||+||||++. ..++|++.+.++.++++|+++.++||++ ...+ ...+.. +|+.-.. ++++++
T Consensus 1 ~lfD~DGvL~~~----------~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~-~~~l~~~~g~~~~~--~~iits 67 (236)
T TIGR01460 1 FLFDIDGVLWLG----------HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDY-AEKLSSLLGVDVSP--DQIITS 67 (236)
T ss_pred CEEeCcCccCcC----------CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHH-HHHHHHhcCCCCCH--HHeeeH
Confidence 589999999983 3468999999999999999999999555 4443 444555 6765333 666664
No 113
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.94 E-value=3.4e-09 Score=69.17 Aligned_cols=55 Identities=33% Similarity=0.454 Sum_probs=45.4
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~ 87 (103)
++++|+||||++. . ..++.+.+.+.|++|+++|++++++|||+... +...++.++
T Consensus 1 li~~D~DgTL~~~------~--~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDP------N--AHELSPETIEALERLREAGVKVVLVTGRSLAE-IKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCC------C--CCcCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHhCC
Confidence 4789999999972 1 13466889999999999999999999999988 488887644
No 114
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.92 E-value=3.6e-09 Score=72.18 Aligned_cols=62 Identities=16% Similarity=0.044 Sum_probs=48.4
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH-CCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~-~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
..+++||+||||++.. .......+.+.+.+.|++|++ .|++++|+|||+... +..+++.+++
T Consensus 14 ~~li~~D~DGTLl~~~----~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~-~~~~~~~~~~ 76 (266)
T PRK10187 14 NYAWFFDLDGTLAEIK----PHPDQVVVPDNILQGLQLLATANDGALALISGRSMVE-LDALAKPYRF 76 (266)
T ss_pred CEEEEEecCCCCCCCC----CCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHH-HHHhcCcccc
Confidence 3678999999999731 222334567899999999998 799999999999888 4777766553
No 115
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.91 E-value=3.1e-09 Score=71.32 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=45.8
Q ss_pred CCcccChhHHHHHHHH--HHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147 45 EIPYLYPHAKGILEAL--KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC 100 (103)
Q Consensus 45 ~~~~~~~g~~~~l~~l--~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~ 100 (103)
+..++.||+.++++.+ ++.|+.++|+|.+....| +.++++.|+...| ..|+|.
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI-~~iL~~~gl~~~f--~~I~TN 122 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFI-ETILEHHGLRDCF--SEIFTN 122 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHH-HHHHHhCCCcccc--ceEEeC
Confidence 4556889999999999 457999999998888885 9999999999888 777764
No 116
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.89 E-value=2.8e-09 Score=74.43 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=44.7
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC----CCeEEEEeCCC---chhHHHHHHHHcCCC
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSP---APDIAKTFLHKLGIH 89 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~----G~~v~i~T~~~---~~~i~~~~l~~~~l~ 89 (103)
+++||+|||||++ ..+.|++.++++.|+++ |+++.++||+. ...+++.+.+++|+.
T Consensus 2 ~~ifD~DGvL~~g----------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 2 GFAFDIDGVLFRG----------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred EEEEeCcCceECC----------ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 4899999999973 44689999999999998 99999999776 344334444788875
No 117
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.87 E-value=5.2e-09 Score=69.07 Aligned_cols=42 Identities=14% Similarity=0.040 Sum_probs=37.1
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
...++||+.++++.|+++|++++|+|++.... ++..+++++.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~~~ 109 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFF-VYPLLEGIVE 109 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHhhCC
Confidence 45789999999999999999999999999877 5888888754
No 118
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.87 E-value=9.1e-09 Score=70.70 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=52.2
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH---HcCCCCccccCee
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH---KLGIHSMFVPMVR 97 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~---~~~l~~~~~~~~i 97 (103)
.++.++||+||+||. ...+.||+.++++.|++.|..+.++||++.... +..++ ++|+.. +..+.|
T Consensus 21 ~~DtfifDcDGVlW~----------g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr-~~y~kK~~~lG~~~-v~e~~i 88 (306)
T KOG2882|consen 21 SFDTFIFDCDGVLWL----------GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSR-EQYMKKFAKLGFNS-VKEENI 88 (306)
T ss_pred hcCEEEEcCCcceee----------cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchH-HHHHHHHHHhCccc-cCcccc
Confidence 477799999999997 355789999999999999999999999987663 55544 566653 333455
Q ss_pred eec
Q 034147 98 LSC 100 (103)
Q Consensus 98 ~~~ 100 (103)
+++
T Consensus 89 ~ss 91 (306)
T KOG2882|consen 89 FSS 91 (306)
T ss_pred cCh
Confidence 543
No 119
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.86 E-value=5.3e-09 Score=70.44 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=48.4
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
+++.|+||||+++. .. .....|...+++++++++|++++++|||+... +....+.+++..
T Consensus 3 li~tDlDGTLl~~~-----~~-~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~-~~~~~~~~~~~~ 62 (249)
T TIGR01485 3 LLVSDLDNTLVDHT-----DG-DNQALLRLNALLEDHRGEDSLLVYSTGRSPHS-YKELQKQKPLLT 62 (249)
T ss_pred EEEEcCCCcCcCCC-----CC-ChHHHHHHHHHHHHhhccCceEEEEcCCCHHH-HHHHHhcCCCCC
Confidence 67889999999731 11 23456889999999999999999999999988 488888787643
No 120
>PLN02423 phosphomannomutase
Probab=98.86 E-value=8.7e-09 Score=69.55 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=41.3
Q ss_pred CCCCceE-EEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH
Q 034147 19 ENLPRLV-VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (103)
Q Consensus 19 ~~~~~~~-~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~ 85 (103)
.+.++++ +||+||||++. .. .+.+.+.+++++|+++ ++++++||++...+ ...+..
T Consensus 3 ~~~~~~i~~~D~DGTLl~~------~~---~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~-~~~~~~ 59 (245)
T PLN02423 3 ARKPGVIALFDVDGTLTAP------RK---EATPEMLEFMKELRKV-VTVGVVGGSDLSKI-SEQLGK 59 (245)
T ss_pred CCccceEEEEeccCCCcCC------CC---cCCHHHHHHHHHHHhC-CEEEEECCcCHHHH-HHHhcc
Confidence 3456655 59999999973 22 3458889999999987 99999999986663 444443
No 121
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=98.85 E-value=1.4e-08 Score=64.50 Aligned_cols=61 Identities=34% Similarity=0.417 Sum_probs=52.7
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.++.+++|+|.||+.-+ .....|.+.+.+..+++.|+++.|+||+.+.. +....+++|++.
T Consensus 27 Gikgvi~DlDNTLv~wd--------~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R-V~~~~~~l~v~f 87 (175)
T COG2179 27 GIKGVILDLDNTLVPWD--------NPDATPELRAWLAELKEAGIKVVVVSNNKESR-VARAAEKLGVPF 87 (175)
T ss_pred CCcEEEEeccCceeccc--------CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH-HHhhhhhcCCce
Confidence 58899999999999731 34466999999999999999999999999888 588899999854
No 122
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.84 E-value=1.8e-08 Score=71.34 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=50.7
Q ss_pred CceEEEeCCCCcccccc--cccccCCCcccChhHHHHHHHHHHCCCeEEEEeCC---------------CchhHHHHHHH
Q 034147 22 PRLVVFDLDYTLWPFYC--ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---------------PAPDIAKTFLH 84 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~--~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~---------------~~~~i~~~~l~ 84 (103)
.++++||.||||+.... +.........++||+.++|++|+++|++++|+||+ +... ....++
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~-i~~iL~ 80 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNL-MMQIFE 80 (354)
T ss_pred CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHH-HHHHHH
Confidence 57899999999998421 11233445789999999999999999999999996 2233 356677
Q ss_pred HcCCC
Q 034147 85 KLGIH 89 (103)
Q Consensus 85 ~~~l~ 89 (103)
.+++.
T Consensus 81 ~~gl~ 85 (354)
T PRK05446 81 SQGIK 85 (354)
T ss_pred HcCCc
Confidence 88773
No 123
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.80 E-value=1e-09 Score=69.91 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=37.0
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++||+.++|+ +++|+||++... ....++++++..+| +.+++++
T Consensus 89 ~~~~~g~~~~L~-------~~~i~Tn~~~~~-~~~~l~~~~l~~~f--d~v~~~~ 133 (175)
T TIGR01493 89 LPPWPDSAAALA-------RVAILSNASHWA-FDQFAQQAGLPWYF--DRAFSVD 133 (175)
T ss_pred CCCCCchHHHHH-------HHhhhhCCCHHH-HHHHHHHCCCHHHH--hhhccHh
Confidence 347788888887 378999999888 58899999999999 7777765
No 124
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.76 E-value=1.9e-08 Score=67.18 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=42.2
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
++++|+||||++. .. .+ +...++++ ++++|++++++|||+... +..+++.+++.
T Consensus 1 li~~DlDgTLl~~------~~---~~-~~~~~~~~-~~~~gi~~viaTGR~~~~-v~~~~~~l~l~ 54 (236)
T TIGR02471 1 LIITDLDNTLLGD------DE---GL-ASFVELLR-GSGDAVGFGIATGRSVES-AKSRYAKLNLP 54 (236)
T ss_pred CeEEeccccccCC------HH---HH-HHHHHHHH-hcCCCceEEEEeCCCHHH-HHHHHHhCCCC
Confidence 4789999999972 11 12 23447777 688999999999999999 59999999874
No 125
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=98.76 E-value=1.5e-08 Score=67.49 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=40.2
Q ss_pred cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC-CCCcc
Q 034147 43 EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG-IHSMF 92 (103)
Q Consensus 43 ~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~-l~~~~ 92 (103)
......+.||+.+++++|+.+|++++++|++++.. .....++++ +...|
T Consensus 87 ~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~-~~~k~~~~~~~~~~f 136 (222)
T KOG2914|consen 87 LFMNSILMPGAEKLVNHLKNNGIPVALATSSTSAS-FELKISRHEDIFKNF 136 (222)
T ss_pred hccccccCCcHHHHHHHHHhCCCCeeEEecCCccc-HHHHHHHhhHHHHhc
Confidence 34566788999999999999999999999998888 477777776 44445
No 126
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.74 E-value=3.5e-08 Score=64.30 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=41.5
Q ss_pred CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 44 ~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
....++.||+++++..|+++|..++++||+.+.. +......+|++.
T Consensus 84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~-i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 84 KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQL-IEPVAEQLGIPK 129 (227)
T ss_pred cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHH-HHHHHHHhCCcH
Confidence 3456788999999999999999999999999888 699999999975
No 127
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.73 E-value=7.9e-08 Score=61.23 Aligned_cols=74 Identities=22% Similarity=0.164 Sum_probs=55.5
Q ss_pred ceEEEeCCCCcccccccccc---------------cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147 23 RLVVFDLDYTLWPFYCECCY---------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~---------------~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~ 87 (103)
+.+++|+|+||+-....-.. ..-.....||+.++|++|.+. +.++|+|+++... |+..+++++
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y-A~~il~~ld 79 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY-ADPVLDILD 79 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH-HHHHHHHHC
Confidence 46899999999974322100 011124679999999999987 9999999999888 799999999
Q ss_pred CCC-ccccCeeeec
Q 034147 88 IHS-MFVPMVRLSC 100 (103)
Q Consensus 88 l~~-~~~~~~i~~~ 100 (103)
... +| ..++++
T Consensus 80 p~~~~f--~~~l~r 91 (162)
T TIGR02251 80 RGGKVI--SRRLYR 91 (162)
T ss_pred cCCCEE--eEEEEc
Confidence 765 66 555544
No 128
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.73 E-value=8.6e-08 Score=60.81 Aligned_cols=78 Identities=17% Similarity=0.051 Sum_probs=57.3
Q ss_pred CCceEEEeCCCCcccccccccc--------------------------cCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECCY--------------------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~--------------------------~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
....+++|+|.||+.+...... ......++||+.++|+++++. +.++|+|+++
T Consensus 5 ~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~ 83 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGT 83 (156)
T ss_pred CceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCc
Confidence 3456899999999985432100 011245789999999999965 9999999999
Q ss_pred chhHHHHHHHHcCCCC-ccccCeeeecc
Q 034147 75 APDIAKTFLHKLGIHS-MFVPMVRLSCC 101 (103)
Q Consensus 75 ~~~i~~~~l~~~~l~~-~~~~~~i~~~~ 101 (103)
... |...++.++... +| ...+++++
T Consensus 84 ~~y-A~~vl~~ldp~~~~F-~~ri~~rd 109 (156)
T TIGR02250 84 RAY-AQAIAKLIDPDGKYF-GDRIISRD 109 (156)
T ss_pred HHH-HHHHHHHhCcCCCee-ccEEEEec
Confidence 888 899999999874 55 13455543
No 129
>PLN03017 trehalose-phosphatase
Probab=98.73 E-value=4.3e-08 Score=69.52 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l 83 (103)
....++++|+||||.+.. .......+.+++.+.|++|+ +|++++|+|||+...+ ..++
T Consensus 109 ~k~~llflD~DGTL~Piv----~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l-~~~~ 166 (366)
T PLN03017 109 GKQIVMFLDYDGTLSPIV----DDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKV-YNFV 166 (366)
T ss_pred CCCeEEEEecCCcCcCCc----CCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHH-HHhh
Confidence 345678889999999631 22334467899999999999 6799999999998884 6653
No 130
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.72 E-value=2.4e-08 Score=63.48 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=36.3
Q ss_pred ceEEEeCCCCccccccccc--ccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCC
Q 034147 23 RLVVFDLDYTLWPFYCECC--YEDEIPYLY-PHAKGILEALKEKGIHVAVASRS 73 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~--~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~ 73 (103)
|+++||+||||+...+... .......++ +++.+.|++|++.|+.++|+||.
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 5789999999998543211 122333444 58999999999999999999965
No 131
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.70 E-value=4.3e-08 Score=61.84 Aligned_cols=74 Identities=24% Similarity=0.214 Sum_probs=50.9
Q ss_pred ceEEEeCCCCccccccccc----------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC-CCc
Q 034147 23 RLVVFDLDYTLWPFYCECC----------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI-HSM 91 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~----------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l-~~~ 91 (103)
+++++|+||||+.....-. .........||+.++|+++.+. +.++|+|++.... ++..++.+.- ..+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~y-a~~v~~~ldp~~~~ 78 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEY-AEPVLDALDPNGKL 78 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHH-HHHHHHHHTTTTSS
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhh-hhHHHHhhhhhccc
Confidence 5799999999998532110 0112345789999999999765 9999999999888 7999999885 345
Q ss_pred cccCeeeec
Q 034147 92 FVPMVRLSC 100 (103)
Q Consensus 92 ~~~~~i~~~ 100 (103)
| ..+++.
T Consensus 79 ~--~~~~~r 85 (159)
T PF03031_consen 79 F--SRRLYR 85 (159)
T ss_dssp E--EEEEEG
T ss_pred c--cccccc
Confidence 5 555543
No 132
>PLN02151 trehalose-phosphatase
Probab=98.67 E-value=6.7e-08 Score=68.34 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=48.5
Q ss_pred hhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 15 IGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 15 ~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
+........++++|+||||.+. ...+....+.+++.+.|++|.+ +.+++|+||++...+ ..++.
T Consensus 91 ~~~~~~~~~ll~lDyDGTL~PI----v~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l-~~~~~ 154 (354)
T PLN02151 91 LHKSEGKQIVMFLDYDGTLSPI----VDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREKV-SSFVK 154 (354)
T ss_pred HHhhcCCceEEEEecCccCCCC----CCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHHH-HHHcC
Confidence 3333334567888999999974 2345556788999999999995 579999999998884 66654
No 133
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.66 E-value=8.9e-08 Score=63.63 Aligned_cols=60 Identities=28% Similarity=0.404 Sum_probs=48.3
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
..+.+|+.|+||||+++ . ..+. .+..++.+|++.|++|++|||++...+ ...-+.+++..
T Consensus 5 ~~~~lIFtDlD~TLl~~-----~----ye~~-pA~pv~~el~d~G~~Vi~~SSKT~aE~-~~l~~~l~v~~ 64 (274)
T COG3769 5 QMPLLIFTDLDGTLLPH-----S----YEWQ-PAAPVLLELKDAGVPVILCSSKTRAEM-LYLQKSLGVQG 64 (274)
T ss_pred ccceEEEEcccCcccCC-----C----CCCC-ccchHHHHHHHcCCeEEEeccchHHHH-HHHHHhcCCCC
Confidence 35788999999999973 1 1222 378899999999999999999999885 77778888763
No 134
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.66 E-value=2.6e-07 Score=61.94 Aligned_cols=86 Identities=17% Similarity=0.107 Sum_probs=58.6
Q ss_pred HHhhHHHHHHhhcc---CCCCceEEEeCCCCcccccccc---------------c--ccCCCcccChhHHHHHHHHHHCC
Q 034147 5 EKVKNEALEIIGQF---ENLPRLVVFDLDYTLWPFYCEC---------------C--YEDEIPYLYPHAKGILEALKEKG 64 (103)
Q Consensus 5 ~~~~~~~~~~~~~~---~~~~~~~~fD~DGTL~~~~~~~---------------~--~~~~~~~~~~g~~~~l~~l~~~G 64 (103)
+...+++...+... .....+++||+|.|+++...+. + -......+.|++.++++.++++|
T Consensus 57 ~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G 136 (229)
T TIGR01675 57 KRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELG 136 (229)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCC
Confidence 33444555544322 2347889999999999833221 0 01234568899999999999999
Q ss_pred CeEEEEeCCCchh--HHHHHHHHcCCCC
Q 034147 65 IHVAVASRSPAPD--IAKTFLHKLGIHS 90 (103)
Q Consensus 65 ~~v~i~T~~~~~~--i~~~~l~~~~l~~ 90 (103)
++++++|||+... .+...|...|+..
T Consensus 137 ~~Vf~lTGR~e~~r~~T~~nL~~~G~~~ 164 (229)
T TIGR01675 137 IKIFLLSGRWEELRNATLDNLINAGFTG 164 (229)
T ss_pred CEEEEEcCCChHHHHHHHHHHHHcCCCC
Confidence 9999999999533 1356677778764
No 135
>PLN02580 trehalose-phosphatase
Probab=98.65 E-value=7.3e-08 Score=68.82 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=48.2
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~ 85 (103)
...+++||+||||.+. ...+....+.+++.+.|+.|.+. .+++|+|||+...+ +.++..
T Consensus 118 k~~~LfLDyDGTLaPI----v~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L-~~~l~~ 176 (384)
T PLN02580 118 KKIALFLDYDGTLSPI----VDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKV-YELVGL 176 (384)
T ss_pred CCeEEEEecCCccCCC----CCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHH-HHHhCC
Confidence 3567788999999875 35566778889999999999998 58999999998884 766654
No 136
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=98.64 E-value=1.6e-07 Score=61.61 Aligned_cols=79 Identities=18% Similarity=0.279 Sum_probs=58.6
Q ss_pred hhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
++.-..++++......+++++|+|+||+++.+. .........|++.++|+.+.+. +.++|.|++.... ++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~kklLVLDLDeTLvh~~~~--~~~~~~~kRP~l~eFL~~~~~~-feIvVwTAa~~~y-a~~~l~~l 81 (195)
T TIGR02245 6 IEQYKIKLLNPPREGKKLLVLDIDYTLFDHRSP--AETGEELMRPYLHEFLTSAYED-YDIVIWSATSMKW-IEIKMTEL 81 (195)
T ss_pred HHhcCccccCCCCCCCcEEEEeCCCceEccccc--CCCceEEeCCCHHHHHHHHHhC-CEEEEEecCCHHH-HHHHHHHh
Confidence 333334555555566799999999999975321 1122345679999999999994 9999999999888 79999988
Q ss_pred CCC
Q 034147 87 GIH 89 (103)
Q Consensus 87 ~l~ 89 (103)
++.
T Consensus 82 ~~~ 84 (195)
T TIGR02245 82 GVL 84 (195)
T ss_pred ccc
Confidence 753
No 137
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=98.60 E-value=2.8e-07 Score=56.21 Aligned_cols=70 Identities=39% Similarity=0.594 Sum_probs=58.7
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
++++.+|+|++++++.+.+...+.....|+.+...|..|+++|+.++++|+.....++.+.++.+.....
T Consensus 18 P~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~ 87 (144)
T KOG4549|consen 18 PRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQT 87 (144)
T ss_pred eEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcc
Confidence 5566777777777777666677777889999999999999999999999999988889999999887653
No 138
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.59 E-value=1.2e-07 Score=72.61 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=49.5
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH-CCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~-~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
..++++||+||||++.. .......+.+.+.+.|++|.+ .|+.++|+||++...+ +..+..+++
T Consensus 491 ~~rLi~~D~DGTL~~~~----~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l-~~~~~~~~l 554 (726)
T PRK14501 491 SRRLLLLDYDGTLVPFA----PDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTL-ERWFGDLPI 554 (726)
T ss_pred cceEEEEecCccccCCC----CCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHH-HHHhCCCCe
Confidence 46899999999999742 123334567899999999999 5999999999998884 777765543
No 139
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.57 E-value=7.3e-07 Score=61.29 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=41.2
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
...+.||+.+++++|+++|++++|+|++.... ++..++++++.+.+
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~-Ie~vL~~lgl~~~~ 164 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNV-LEEVLRQAGVYHPN 164 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHHcCCCCcC
Confidence 57789999999999999999999999999888 59999999986444
No 140
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.57 E-value=7.4e-08 Score=63.89 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=62.1
Q ss_pred CCceEEEeCCCCcccccccc------------------------c---------------------ccCCCcccChhHHH
Q 034147 21 LPRLVVFDLDYTLWPFYCEC------------------------C---------------------YEDEIPYLYPHAKG 55 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~------------------------~---------------------~~~~~~~~~~g~~~ 55 (103)
...+++||+|-|+++.+++. + ..-......||+.+
T Consensus 12 ~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv~ 91 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMVR 91 (256)
T ss_pred CcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHHH
Confidence 45679999999999987761 1 12244567899999
Q ss_pred HHHHHHHCCC-eEEEEeCCCchhHHHHHHHHcCCCCccccCeeee
Q 034147 56 ILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS 99 (103)
Q Consensus 56 ~l~~l~~~G~-~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~ 99 (103)
+++.+++.|. .++|+|-.+.-+| +.+++++++.++| .+|+|
T Consensus 92 lik~~ak~g~~eliIVSDaNsfFI-e~~Lea~~~~d~F--~~IfT 133 (256)
T KOG3120|consen 92 LIKSAAKLGCFELIIVSDANSFFI-EEILEAAGIHDLF--SEIFT 133 (256)
T ss_pred HHHHHHhCCCceEEEEecCchhHH-HHHHHHccHHHHH--HHHhc
Confidence 9999999995 9999998887885 9999999999888 66665
No 141
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.51 E-value=7.1e-07 Score=59.53 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=38.7
Q ss_pred CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc---CCCCcc
Q 034147 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMF 92 (103)
Q Consensus 45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~---~l~~~~ 92 (103)
....++||+.++|++|+++|++++|+||++... ....++++ ++.++|
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~-~~~~~~~~~~~~L~~~f 141 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPA-QKLLFGHSDAGNLTPYF 141 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhhccccchhhhc
Confidence 345699999999999999999999999999877 47777775 555555
No 142
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.48 E-value=4.3e-07 Score=61.14 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=40.9
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC-CCeEEEEeCCCchh
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPD 77 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~ 77 (103)
.++++||+||||.+. ...+....+.+++.+.|+.|.+. +..++|+||++...
T Consensus 3 ~~~l~lD~DGTL~~~----~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~ 55 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI----VPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKFLE 55 (244)
T ss_pred cEEEEEecCccccCC----cCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCChhh
Confidence 578999999999974 23344566789999999999776 46789999997555
No 143
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.46 E-value=4.8e-07 Score=70.34 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=47.1
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHH-HHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL-KEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l-~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
..+++++|+||||++. ......+.+++.++|++| ++.|..++|+||++...+ +.++...
T Consensus 595 ~~rlI~LDyDGTLlp~------~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L-~~~f~~~ 654 (854)
T PLN02205 595 TTRAILLDYDGTLMPQ------ASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTL-ADWFSPC 654 (854)
T ss_pred cCeEEEEecCCcccCC------ccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHH-HHHhCCC
Confidence 4689999999999973 111345678999999997 778999999999999884 7777543
No 144
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.45 E-value=2.5e-06 Score=58.43 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=50.3
Q ss_pred CCceEEEeCCCCccccccc---------------cc---ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--HHH
Q 034147 21 LPRLVVFDLDYTLWPFYCE---------------CC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAK 80 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~---------------~~---~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--i~~ 80 (103)
..++++||+|+|+++...+ |+ -.....++.|++.++.+.++++|++++++|||+... .+.
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~ 179 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE 179 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence 4689999999999962211 11 011245678999999999999999999999999532 245
Q ss_pred HHHHHcCCCC
Q 034147 81 TFLHKLGIHS 90 (103)
Q Consensus 81 ~~l~~~~l~~ 90 (103)
..|.+.|+..
T Consensus 180 ~NL~kaGy~~ 189 (275)
T TIGR01680 180 ANLKKAGYHT 189 (275)
T ss_pred HHHHHcCCCC
Confidence 5566667753
No 145
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.45 E-value=2.7e-07 Score=61.87 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=51.1
Q ss_pred CCCceEEEeCCCCccccccc------------------ccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--HH
Q 034147 20 NLPRLVVFDLDYTLWPFYCE------------------CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IA 79 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~------------------~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--i~ 79 (103)
..+.+++||+|+|+++...+ |...+ ...+.||+.++++.++++|+.|+++|||+... .+
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~-~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T 148 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASG-KAPAIPGALELYNYARSRGVKVFFITGRPESQREAT 148 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCT-GGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcc-cCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHH
Confidence 45788999999999863211 11222 34788999999999999999999999988543 14
Q ss_pred HHHHHHcCCCC
Q 034147 80 KTFLHKLGIHS 90 (103)
Q Consensus 80 ~~~l~~~~l~~ 90 (103)
..-|...|+..
T Consensus 149 ~~nL~~~G~~~ 159 (229)
T PF03767_consen 149 EKNLKKAGFPG 159 (229)
T ss_dssp HHHHHHHTTST
T ss_pred HHHHHHcCCCc
Confidence 45567777643
No 146
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.44 E-value=1.1e-06 Score=56.41 Aligned_cols=61 Identities=28% Similarity=0.256 Sum_probs=48.4
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCC--eEEEEeCCC-------chhHHHHHHHHcCCC
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI--HVAVASRSP-------APDIAKTFLHKLGIH 89 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~--~v~i~T~~~-------~~~i~~~~l~~~~l~ 89 (103)
..+++++||.|+||+.. ....+.|...+.++++++.+. .++|+||+. ... ++..-+.+|++
T Consensus 39 ~Gik~li~DkDNTL~~~--------~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~-a~~~~~~lgIp 108 (168)
T PF09419_consen 39 KGIKALIFDKDNTLTPP--------YEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGER-AEALEKALGIP 108 (168)
T ss_pred cCceEEEEcCCCCCCCC--------CcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHH-HHHHHHhhCCc
Confidence 46899999999999863 234577889999999999876 499999883 455 57777788875
No 147
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.43 E-value=5.5e-07 Score=59.73 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=42.8
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
.+|.+-.+.+|-.|+.++ ..+.||+.... |...++++|+.++| +.|++.+
T Consensus 99 LkPD~~LRnlLL~l~~r~--k~~FTNa~k~H-A~r~Lk~LGieDcF--egii~~e 148 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR--KWIFTNAYKVH-AIRILKKLGIEDCF--EGIICFE 148 (244)
T ss_pred cCCCHHHHHHHHhCcccc--EEEecCCcHHH-HHHHHHHhChHHhc--cceeEee
Confidence 567777888999998875 67799999988 89999999999999 8888765
No 148
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=98.42 E-value=1.1e-06 Score=55.80 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=45.4
Q ss_pred eEEEeCCCCcccccccc---cccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc--hhHHHHHHHHc
Q 034147 24 LVVFDLDYTLWPFYCEC---CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA--PDIAKTFLHKL 86 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~---~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~--~~i~~~~l~~~ 86 (103)
++++|+|||++.++... ...+. ....+|+.+++++++++|+++.-+|+++. ...++.++...
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~-d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGK-DWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCc-hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 47899999999864210 11122 25679999999999999999999999993 22356666666
No 149
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=8.8e-07 Score=60.57 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=50.2
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCC-CeEEEEeCCCchhHHHHHHHHcCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
..+++++|+||||.+.. ..+....+.+++.++|+.|.++. ..++|+||++...+ +.++.-.++
T Consensus 17 ~~~~~~lDyDGTl~~i~----~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l-~~~~~v~~i 80 (266)
T COG1877 17 RKRLLFLDYDGTLTEIV----PHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAEL-ERLFGVPGI 80 (266)
T ss_pred cceEEEEeccccccccc----cCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHH-HHhcCCCCc
Confidence 46889999999999863 45666778899999999999873 46999999998884 776664443
No 150
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=98.35 E-value=9.7e-07 Score=57.20 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=40.8
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
.+++++|.||||......+-.......+.||+.+.+.+|++.|++++++||.+
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQs 57 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQS 57 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCC
Confidence 67899999999986322111222344678999999999999999999999744
No 151
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.34 E-value=9e-07 Score=57.53 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=22.4
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAP 76 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~ 76 (103)
...|.||+.+++++|.+.|..+.++|+++..
T Consensus 71 ~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 71 NLPPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp T--B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CCCccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 4579999999999999999777777766543
No 152
>PLN02382 probable sucrose-phosphatase
Probab=98.33 E-value=1.6e-06 Score=62.69 Aligned_cols=62 Identities=15% Similarity=0.067 Sum_probs=44.0
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.-+++.|+||||+++ . .......+....++++++++|+.++++|||+... ...+.+.+++..
T Consensus 9 ~~lI~sDLDGTLL~~-----~-~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~-~~~l~~~~~l~~ 70 (413)
T PLN02382 9 RLMIVSDLDHTMVDH-----H-DPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTL-YKELRKEKPLLT 70 (413)
T ss_pred CEEEEEcCCCcCcCC-----C-CccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHH-HHHHHHhCCCCC
Confidence 445677999999973 1 1111111345556688999999999999999888 488888887543
No 153
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=3.5e-06 Score=54.68 Aligned_cols=42 Identities=24% Similarity=0.203 Sum_probs=37.6
Q ss_pred CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (103)
Q Consensus 45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~ 87 (103)
+..++.||.+++++++++++++++|+|++..+.+ ..+++...
T Consensus 70 k~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI-~~lfe~iv 111 (220)
T COG4359 70 KDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFI-YPLFEGIV 111 (220)
T ss_pred hhcccCccHHHHHHHHHHcCCCEEEEeCCCchHH-HHHHHhhc
Confidence 4467889999999999999999999999998885 99999876
No 154
>PTZ00445 p36-lilke protein; Provisional
Probab=98.19 E-value=8.6e-06 Score=53.95 Aligned_cols=70 Identities=17% Similarity=0.089 Sum_probs=47.7
Q ss_pred CCceEEEeCCCCccccccc-c-cc----cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--------------HHH
Q 034147 21 LPRLVVFDLDYTLWPFYCE-C-CY----EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------IAK 80 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~-~-~~----~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--------------i~~ 80 (103)
.++++++|+|.||+.-.+. | +. ..-...+.|....++++|++.|++++|+|=++... +++
T Consensus 42 GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~ 121 (219)
T PTZ00445 42 GIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVE 121 (219)
T ss_pred CCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHH
Confidence 5899999999999982111 0 00 00111357889999999999999999999555432 346
Q ss_pred HHHHHcCCCC
Q 034147 81 TFLHKLGIHS 90 (103)
Q Consensus 81 ~~l~~~~l~~ 90 (103)
..++.-+.+.
T Consensus 122 ~~lk~s~~~~ 131 (219)
T PTZ00445 122 AALKKSKCDF 131 (219)
T ss_pred HHHHhcCccc
Confidence 6666655543
No 155
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.17 E-value=4.9e-06 Score=56.02 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=42.7
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC 100 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~ 100 (103)
.....+++.+++++||++|..++++||-+.. .+..+..+++..+| +.++.+
T Consensus 111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r--~~~~l~~~~l~~~f--D~vv~S 161 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKGTILGIISNFDDR--LRLLLLPLGLSAYF--DFVVES 161 (237)
T ss_pred CceeccHHHHHHHHHHhCCeEEEEecCCcHH--HHHHhhccCHHHhh--hhhhhh
Confidence 4456788999999999999999999999954 37888999999899 776655
No 156
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.15 E-value=1e-05 Score=59.16 Aligned_cols=72 Identities=24% Similarity=0.313 Sum_probs=52.8
Q ss_pred HhhccCCCCceEEEeCCCCccccccccc-------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 14 IIGQFENLPRLVVFDLDYTLWPFYCECC-------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 14 ~~~~~~~~~~~~~fD~DGTL~~~~~~~~-------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
+.++..+..|++++|+|+|||.+-..-+ .......++....+.+..|+++|+.++|||-+.... |.+.+++.
T Consensus 214 ~~A~~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~d-a~evF~kh 292 (574)
T COG3882 214 LAAMSGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKD-AKEVFRKH 292 (574)
T ss_pred HHHhhCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhh-HHHHHhhC
Confidence 3445566789999999999997432100 111123466778899999999999999999888777 68877765
No 157
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.15 E-value=6.1e-06 Score=64.71 Aligned_cols=66 Identities=20% Similarity=0.129 Sum_probs=47.8
Q ss_pred CceEEEeCCCCccccccccccc-----CCCcccChhHHHHHHHHHHC-CCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 22 PRLVVFDLDYTLWPFYCECCYE-----DEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~-----~~~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
.++++||+||||++....-... .....+.|++.++|+.|.+. +..|+|+||++...+ +.++...++
T Consensus 591 ~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~L-e~~fg~~~L 662 (934)
T PLN03064 591 NRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVL-DENFGEFDM 662 (934)
T ss_pred ceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHH-HHHhCCCCc
Confidence 5789999999999852110000 01345778899999999874 689999999999885 888776543
No 158
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=98.15 E-value=2.4e-06 Score=57.20 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=30.0
Q ss_pred EEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCC-CeEEEEeCCCchh
Q 034147 26 VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPD 77 (103)
Q Consensus 26 ~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~ 77 (103)
+||+||||.+.. ..+....+.+++.++|++|.+.. ..++|+||++...
T Consensus 1 ~lDyDGTL~p~~----~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 1 FLDYDGTLAPIV----DDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp EEE-TTTSS-------S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred CcccCCccCCCC----CCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 689999999853 34556678899999999998864 4699999999765
No 159
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.12 E-value=7.3e-06 Score=57.97 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=48.1
Q ss_pred CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc-C-------CCCccccCeeeeccc
Q 034147 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-G-------IHSMFVPMVRLSCCI 102 (103)
Q Consensus 45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~-~-------l~~~~~~~~i~~~~~ 102 (103)
....+.||+.++|++|+++|++++|+||++... ++..++.+ + +.++| +.|+++.-
T Consensus 181 ~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~y-t~~im~~l~g~~~~~~~w~~yF--D~IIt~a~ 243 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDY-TDKGMKYLLGPFLGEHDWRDYF--DVVIVDAR 243 (343)
T ss_pred HHhccchhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhhCCcccccchHhhC--cEEEeCCC
Confidence 445678999999999999999999999999988 79999996 7 88999 88888753
No 160
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.11 E-value=8.3e-06 Score=63.25 Aligned_cols=64 Identities=23% Similarity=0.120 Sum_probs=47.7
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC-CCeEEEEeCCCchhHHHHHHHHcC
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLG 87 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~i~~~~l~~~~ 87 (103)
.++++||+||||.+....- .......+.|++.++|+.|.+. +..|+|+||++...+ +.++...+
T Consensus 507 ~rll~LDyDGTL~~~~~~~-~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L-~~~~~~~~ 571 (797)
T PLN03063 507 NRLLILGFYGTLTEPRNSQ-IKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDIL-DKNFGEYN 571 (797)
T ss_pred CeEEEEecCccccCCCCCc-cccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHH-HHHhCCCC
Confidence 5789999999999742100 0223456788999999999864 689999999998885 87776543
No 161
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.08 E-value=5.8e-06 Score=55.95 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=43.0
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC 100 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~ 100 (103)
++++++|+||||+++. ........++++...+.++.++++||++... +...++..++.. ++.++++
T Consensus 2 ~~ll~sDlD~Tl~~~~---------~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~-~~~~~~~~~l~~---Pd~~I~s 67 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGD---------DEALARLEELLEQQARPEILFVYVTGRSLES-VLRLLREYNLPQ---PDYIITS 67 (247)
T ss_dssp SEEEEEETBTTTBHCH---------HHHHHHHHHHHHHHHCCGEEEEEE-SS-HHH-HHHHHHHCT-EE----SEEEET
T ss_pred CEEEEEECCCCCcCCC---------HHHHHHHHHHHHHhhCCCceEEEECCCCHHH-HHHHHHhCCCCC---CCEEEec
Confidence 4678999999999421 1122344555554446789999999999998 588899887632 2555554
No 162
>PLN02811 hydrolase
Probab=98.04 E-value=7.5e-06 Score=54.15 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=41.9
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
...++||+.++|+.|+++|++++|+||+....+.....+..++..+| +.+++++
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f--~~i~~~~ 129 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLM--HHVVTGD 129 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhC--CEEEECC
Confidence 35688999999999999999999999998755323344445677778 7777765
No 163
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.92 E-value=0.00013 Score=49.36 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=52.0
Q ss_pred CCceEEEeCCCCccccccccc-----------------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh-H--HH
Q 034147 21 LPRLVVFDLDYTLWPFYCECC-----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD-I--AK 80 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~-----------------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~-i--~~ 80 (103)
..++|+.|+|-|++|...+.. -.....++.||+.+++++.-++|..+..+|+|..+. . +.
T Consensus 78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~ 157 (274)
T COG2503 78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTI 157 (274)
T ss_pred CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhH
Confidence 356899999999998443311 123456788999999999999999999999998544 1 23
Q ss_pred HHHHHcCCCCc
Q 034147 81 TFLHKLGIHSM 91 (103)
Q Consensus 81 ~~l~~~~l~~~ 91 (103)
.-+.++|++..
T Consensus 158 ~nLk~~g~~~~ 168 (274)
T COG2503 158 ENLKSEGLPQV 168 (274)
T ss_pred HHHHHcCcccc
Confidence 44566677653
No 164
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.87 E-value=4.1e-05 Score=57.22 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=55.0
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCC-CeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
..+.+.+..||++... ..-...++||+.+++++|+++| ++++++||.+... ++..++++|+.++|
T Consensus 363 g~~~~~v~~~~~~~g~------i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~-a~~i~~~lgi~~~f 428 (556)
T TIGR01525 363 GKTVVFVAVDGELLGV------IALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSA-AEAVAAELGIDEVH 428 (556)
T ss_pred CcEEEEEEECCEEEEE------EEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHH-HHHHHHHhCCCeee
Confidence 3567888899987752 2334568999999999999999 9999999999888 79999999998877
No 165
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=97.85 E-value=6.7e-05 Score=49.81 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=51.3
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--HHHHHHHHcCCCCccccCee
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVR 97 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--i~~~~l~~~~l~~~~~~~~i 97 (103)
+.++.+++|+-|||... ..+.||+.+.++.|+..+.++=.+||....+ -....++++|+.- +.++|
T Consensus 5 ~~v~gvLlDlSGtLh~e----------~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v--~eeei 72 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIE----------DAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDV--SEEEI 72 (262)
T ss_pred cccceEEEeccceEecc----------cccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCc--cHHHh
Confidence 34678999999999972 3377999999999999899999999766433 1356677777753 23566
Q ss_pred eec
Q 034147 98 LSC 100 (103)
Q Consensus 98 ~~~ 100 (103)
+++
T Consensus 73 ~ts 75 (262)
T KOG3040|consen 73 FTS 75 (262)
T ss_pred cCc
Confidence 654
No 166
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=97.70 E-value=0.00017 Score=50.58 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=43.9
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC----CCeEEEEeCCC----chhHHHHHHHHcCCC
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSP----APDIAKTFLHKLGIH 89 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~----G~~v~i~T~~~----~~~i~~~~l~~~~l~ 89 (103)
.=.++||+||+|+- ..++.+++.++++.|..+ .+|++++||+. +.. +++....+|..
T Consensus 35 ~fgfafDIDGVL~R----------G~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~r-A~~lS~~Lgv~ 99 (389)
T KOG1618|consen 35 TFGFAFDIDGVLFR----------GHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSR-AQELSALLGVE 99 (389)
T ss_pred ceeEEEecccEEEe----------cCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhH-HHHHHHhhCCc
Confidence 34589999999997 346789999999999988 79999999765 223 45555666654
No 167
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.55 E-value=0.00023 Score=53.42 Aligned_cols=61 Identities=26% Similarity=0.310 Sum_probs=50.9
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
..++.++.||++.-. ..-...++|++.+++++|+++|++++++||.+... ++...+++|++
T Consensus 385 ~~~~~~~~~~~~~g~------~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~-a~~ia~~lgi~ 445 (562)
T TIGR01511 385 STSVLVAVNGELAGV------FALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKT-AKAVAKELGIN 445 (562)
T ss_pred CEEEEEEECCEEEEE------EEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHcCCc
Confidence 466788999998742 12234688999999999999999999999999887 79999999985
No 168
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.50 E-value=0.00022 Score=53.25 Aligned_cols=63 Identities=22% Similarity=0.202 Sum_probs=50.7
Q ss_pred ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCC-eEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~-~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
..+.+-.||++... ......++||+.+.+++|+++|+ +++++||.+... ++..++++|++++|
T Consensus 343 ~~~~v~~~~~~~g~------i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~-a~~i~~~lgi~~~f 406 (536)
T TIGR01512 343 TIVHVARDGTYLGY------ILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAV-AERVARELGIDEVH 406 (536)
T ss_pred eEEEEEECCEEEEE------EEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHH-HHHHHHHcCChhhh
Confidence 34555667776542 22245689999999999999999 999999999888 79999999998877
No 169
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=97.41 E-value=0.0012 Score=47.35 Aligned_cols=58 Identities=22% Similarity=0.238 Sum_probs=40.0
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
..+++-||-|+||++. +........+..-|-+|-++|+.|+|+|...... +..+-+++
T Consensus 146 ~L~LvTFDgDvTLY~D-------G~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~-a~kY~~RL 203 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYED-------GASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPG-AEKYEERL 203 (408)
T ss_pred CceEEEEcCCcccccC-------CCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCC-hHHHHHHH
Confidence 5799999999999972 3333334445554445556789999999877766 56655554
No 170
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=97.36 E-value=0.00052 Score=45.35 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=36.6
Q ss_pred ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
-+++||+||||+.. .....|.+.++|+.|+++ +.++++-++....
T Consensus 12 ~l~lfdvdgtLt~~---------r~~~~~e~~~~l~~lr~~-v~ig~VggsDl~k 56 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPP---------RQKVTPEMLEFLQKLRKK-VTIGFVGGSDLSK 56 (252)
T ss_pred eEEEEecCCccccc---------cccCCHHHHHHHHHHhhh-eEEEEeecHHHHH
Confidence 46889999999963 345679999999999987 8999998887544
No 171
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=97.10 E-value=0.00077 Score=43.65 Aligned_cols=43 Identities=37% Similarity=0.498 Sum_probs=38.9
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
..++|++.++|++|++.|++++++||.+... +....+.+|+..
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~-a~~~~~~lgi~~ 168 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNEST-ASAIAKQLGIFD 168 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHH-HHHHHHHTTSCS
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccc-cccccccccccc
Confidence 4678999999999999999999999999888 799999999954
No 172
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=96.99 E-value=0.0012 Score=42.11 Aligned_cols=40 Identities=30% Similarity=0.551 Sum_probs=34.8
Q ss_pred ChhHH----HHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 50 YPHAK----GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 50 ~~g~~----~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
+|++. ++++.++++|++++|+|+++... ++..++.++++.
T Consensus 87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~-i~~~~~~~~i~~ 130 (192)
T PF12710_consen 87 FPGFIPDAMELIRELKDNGIKVVIVSGSPDEI-IEPIAERLGIDD 130 (192)
T ss_dssp CTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHH-HHHHHHHTTSSE
T ss_pred CcCchhhHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCc
Confidence 35556 99999999999999999998777 699999999876
No 173
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=96.95 E-value=0.0036 Score=49.39 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=41.6
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
..+++|++.+.+++|++.|++++++||.+... +....+++|+...+
T Consensus 526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~t-A~~ia~~~Gi~~~~ 571 (884)
T TIGR01522 526 NDPPRPGVKEAVTTLITGGVRIIMITGDSQET-AVSIARRLGMPSKT 571 (884)
T ss_pred cCcchhHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCCCC
Confidence 45688999999999999999999999999888 89999999997654
No 174
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=96.92 E-value=0.0037 Score=42.60 Aligned_cols=68 Identities=26% Similarity=0.270 Sum_probs=45.8
Q ss_pred CCceEEEeCCCCccccccccc-----------------------------------ccCCCcccChhHHHHHHHHHHCCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECC-----------------------------------YEDEIPYLYPHAKGILEALKEKGI 65 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~-----------------------------------~~~~~~~~~~g~~~~l~~l~~~G~ 65 (103)
.--+++||+|.||+.+..... .....-..-+.+.++++.++++|+
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 345799999999998553311 111222344678899999999999
Q ss_pred eEEEEeCCCchhHHHHHHH---HcCCC
Q 034147 66 HVAVASRSPAPDIAKTFLH---KLGIH 89 (103)
Q Consensus 66 ~v~i~T~~~~~~i~~~~l~---~~~l~ 89 (103)
++..+|.++... ....++ .+|++
T Consensus 99 ~v~alT~~~~~~-~~~t~~~Lk~~gi~ 124 (252)
T PF11019_consen 99 PVIALTARGPNM-EDWTLRELKSLGID 124 (252)
T ss_pred cEEEEcCCChhh-HHHHHHHHHHCCCC
Confidence 999999888544 344444 45553
No 175
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.69 E-value=0.0022 Score=46.06 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=40.5
Q ss_pred CCceEEEeCCCCcccccccc---cccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 21 LPRLVVFDLDYTLWPFYCEC---CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~---~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
..+.+.||+||||++..+.. ........+++....=++.+.+.|+.++|.|+..
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEeccc
Confidence 46789999999999954421 0112333577888899999999999999999655
No 176
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=96.64 E-value=0.014 Score=38.13 Aligned_cols=80 Identities=19% Similarity=0.144 Sum_probs=52.2
Q ss_pred CCCceEEEeCCCCcccccccc---------------------c----ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 20 NLPRLVVFDLDYTLWPFYCEC---------------------C----YEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~---------------------~----~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
+.+-.+-||+|.|++-...++ + ...+...|.+-+.+++...+++|-.+..+||+.
T Consensus 61 ~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt 140 (237)
T COG3700 61 RPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRT 140 (237)
T ss_pred CCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 345668899999998644331 0 122344466778899999999999999999988
Q ss_pred chh---HHHHHHHHcCCCCccccCeeeecc
Q 034147 75 APD---IAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 75 ~~~---i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
... ++..+.+.|.+.... ..++.++
T Consensus 141 ~gk~d~vsk~Lak~F~i~~m~--pv~f~Gd 168 (237)
T COG3700 141 PGKTDTVSKTLAKNFHITNMN--PVIFAGD 168 (237)
T ss_pred CCcccccchhHHhhcccCCCc--ceeeccC
Confidence 543 123334456665544 4455543
No 177
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.62 E-value=0.0069 Score=47.05 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=51.6
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
..+++++=.||++.-. -.-...++|++.+.+++|+++|++++++||.+... ++...+++|+..+
T Consensus 547 g~~~v~va~~~~~~g~------i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~-a~~ia~~lgi~~~ 610 (741)
T PRK11033 547 GKTVVLVLRNDDVLGL------IALQDTLRADARQAISELKALGIKGVMLTGDNPRA-AAAIAGELGIDFR 610 (741)
T ss_pred CCEEEEEEECCEEEEE------EEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCee
Confidence 3566777778887641 12235688999999999999999999999999888 7999999999643
No 178
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=96.61 E-value=0.014 Score=36.33 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=43.0
Q ss_pred ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe--CCCchhHHHHHHHHcCCCC
Q 034147 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T--~~~~~~i~~~~l~~~~l~~ 90 (103)
-+.++|+||.++...+ .. --...++++++.+.|.+++|+| +..... ++.+...|+-.-
T Consensus 44 giAildL~G~~l~l~S-----~R----~~~~~evi~~I~~~G~PviVAtDV~p~P~~-V~Kia~~f~A~l 103 (138)
T PF04312_consen 44 GIAILDLDGELLDLKS-----SR----NMSRSEVIEWISEYGKPVIVATDVSPPPET-VKKIARSFNAVL 103 (138)
T ss_pred EEEEEecCCcEEEEEe-----ec----CCCHHHHHHHHHHcCCEEEEEecCCCCcHH-HHHHHHHhCCcc
Confidence 4568899999998532 11 1357899999999999999999 555566 577777777543
No 179
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.61 E-value=0.0065 Score=47.70 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=51.7
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
...++++-.||++.- ...-...++|++.+.+++|++.|++++++||.+... ++...+++|+.+++
T Consensus 629 g~~~v~va~~~~~~g------~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~-a~~ia~~lgi~~~~ 693 (834)
T PRK10671 629 GATPVLLAVDGKAAA------LLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTT-ANAIAKEAGIDEVI 693 (834)
T ss_pred CCeEEEEEECCEEEE------EEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCEEE
Confidence 355667777888663 112235678999999999999999999999999887 79999999997755
No 180
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=96.58 E-value=0.0052 Score=45.59 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=26.9
Q ss_pred HHHHHHHCCCeEEEEeCCCchhHHHHHHHH-cCCCC
Q 034147 56 ILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHS 90 (103)
Q Consensus 56 ~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~-~~l~~ 90 (103)
.++.+++.| +++++|.+++-. ++.+++. +|.+.
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvm-VEpFake~LG~D~ 134 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVM-VERFAKEHLRADE 134 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHH-HHHHHHHhcCCce
Confidence 566777788 999999999877 6999998 77643
No 181
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=96.55 E-value=0.011 Score=43.96 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=24.9
Q ss_pred HHHHHHHCCCeEEEEeCCCchhHHHHHHHH-cCCCCc
Q 034147 56 ILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSM 91 (103)
Q Consensus 56 ~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~-~~l~~~ 91 (103)
.++.++++|.. +|+|+++... ++.+++. +|++..
T Consensus 115 a~~~~~~~g~~-vvVSASp~~~-Vepfa~~~LGid~V 149 (497)
T PLN02177 115 TWRVFNSFGKR-YIITASPRIM-VEPFVKTFLGADKV 149 (497)
T ss_pred HHHHHHhCCCE-EEEECCcHHH-HHHHHHHcCCCCEE
Confidence 34455677755 8999999776 6999976 788653
No 182
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=96.40 E-value=0.01 Score=45.78 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=51.4
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
.+.+++-.|+++.- --.-...+.|++.+.+++|++.|++++++||.+... +....+++|+++++
T Consensus 426 ~r~l~va~~~~~lG------~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~t-a~~iA~~lGI~~v~ 489 (675)
T TIGR01497 426 GTPLVVCEDNRIYG------VIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLT-AAAIAAEAGVDDFI 489 (675)
T ss_pred CeEEEEEECCEEEE------EEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCEEE
Confidence 46677766777664 122234688999999999999999999999999888 79999999997655
No 183
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=96.38 E-value=0.012 Score=38.51 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=33.7
Q ss_pred CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
-..++||.+.+.|++.+++|+++.|-|+++.+. ..-++.+-
T Consensus 100 lkahlypDav~~ik~wk~~g~~vyiYSSGSV~A-QkL~Fghs 140 (229)
T COG4229 100 LKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKA-QKLFFGHS 140 (229)
T ss_pred cccccCHhHHHHHHHHHHcCCcEEEEcCCCchh-HHHhhccc
Confidence 345789999999999999999999999999776 35555543
No 184
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.01 Score=45.93 Aligned_cols=62 Identities=27% Similarity=0.298 Sum_probs=51.4
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
++++-.||.+.-. -.-...+.|++.+.+++|++.|+++.++||-++.. ++...+++|++++.
T Consensus 519 ~v~va~dg~~~g~------i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~-A~~iA~~lGId~v~ 580 (713)
T COG2217 519 VVFVAVDGKLVGV------IALADELRPDAKEAIAALKALGIKVVMLTGDNRRT-AEAIAKELGIDEVR 580 (713)
T ss_pred EEEEEECCEEEEE------EEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcChHhhe
Confidence 6788999976641 11234578999999999999999999999999888 89999999998765
No 185
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=96.14 E-value=0.012 Score=44.84 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=43.8
Q ss_pred CCceEEEeCCCCccccccccc---ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch--hHHHHHHHHc
Q 034147 21 LPRLVVFDLDYTLWPFYCECC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--DIAKTFLHKL 86 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~---~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~--~i~~~~l~~~ 86 (103)
+-++|+.|+|||++..+.-.. .-++.. -..|+.++..+.+++||++..+|.+... ..++.+|..+
T Consensus 529 n~kIVISDIDGTITKSDvLGh~lp~iGkDW-Th~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv 598 (738)
T KOG2116|consen 529 NDKIVISDIDGTITKSDVLGHVLPMIGKDW-THTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNV 598 (738)
T ss_pred CCcEEEecCCCceEhhhhhhhhhhhhcCcc-hhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHH
Confidence 357789999999997542211 111111 2368999999999999999999988732 2245555544
No 186
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=96.00 E-value=0.03 Score=43.24 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=51.2
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
.+.+++-.|+++.-. -.-...+.|++.+.+++|++.|+++..+||-+... ++...+++|+++++
T Consensus 425 ~~~l~va~~~~~lG~------i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGId~v~ 488 (679)
T PRK01122 425 GTPLVVAEDNRVLGV------IYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLT-AAAIAAEAGVDDFL 488 (679)
T ss_pred CcEEEEEECCeEEEE------EEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCcEEE
Confidence 466666667777641 12234578999999999999999999999999888 89999999997654
No 187
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=95.81 E-value=0.019 Score=35.67 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=46.1
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
..+-++++|+.. ..++|+.+.+.+++|++. +.+.|+|+-...++ .+..+..|++-
T Consensus 16 ~~~~~v~~tiat----------gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl-~~lae~~gi~~ 70 (152)
T COG4087 16 SKAGKVLYTIAT----------GGKLFSEVSETIQELHDM-VDIYIASGDRKGSL-VQLAEFVGIPV 70 (152)
T ss_pred eecceEEEEEcc----------CcEEcHhhHHHHHHHHHh-heEEEecCCcchHH-HHHHHHcCCce
Confidence 345688888886 467899999999999999 99999999998885 88888888753
No 188
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=95.79 E-value=0.051 Score=32.19 Aligned_cols=84 Identities=13% Similarity=0.250 Sum_probs=57.2
Q ss_pred cHHHhhHHHHHHhhccC------CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147 3 DLEKVKNEALEIIGQFE------NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP 76 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~------~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~ 76 (103)
+++..++...+...... ..++.+++|+.++-.- .........++.+.++.+|.++.++.-+ +
T Consensus 23 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~i----------Dssgi~~L~~~~~~~~~~g~~~~l~~~~--~ 90 (117)
T PF01740_consen 23 NAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFI----------DSSGIQALVDIIKELRRRGVQLVLVGLN--P 90 (117)
T ss_dssp HHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEE----------SHHHHHHHHHHHHHHHHTTCEEEEESHH--H
T ss_pred HHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcC----------CHHHHHHHHHHHHHHHHCCCEEEEEECC--H
Confidence 35666777777776653 2368999999998442 1222245677889999999999987543 4
Q ss_pred hHHHHHHHHcCCCCccccCeeee
Q 034147 77 DIAKTFLHKLGIHSMFVPMVRLS 99 (103)
Q Consensus 77 ~i~~~~l~~~~l~~~~~~~~i~~ 99 (103)
. +...++..|+...+..+.+|.
T Consensus 91 ~-v~~~l~~~~~~~~~~~~~~~~ 112 (117)
T PF01740_consen 91 D-VRRILERSGLIDFIPEDQIFP 112 (117)
T ss_dssp H-HHHHHHHTTGHHHSCGGEEES
T ss_pred H-HHHHHHHcCCChhcCCCCccC
Confidence 4 377799999877664445543
No 189
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=95.68 E-value=0.025 Score=43.63 Aligned_cols=64 Identities=14% Similarity=0.086 Sum_probs=48.7
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
.+.++.-.|+++.- --.-...+.|++.+.+++|++.|+++..+||-+... +....+++|+.++|
T Consensus 421 ~~~l~v~~~~~~lG------~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGI~~v~ 484 (673)
T PRK14010 421 GTPLVVLEDNEILG------VIYLKDVIKDGLVERFRELREMGIETVMCTGDNELT-AATIAKEAGVDRFV 484 (673)
T ss_pred CeEEEEEECCEEEE------EEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCceEE
Confidence 34444333666553 112234688999999999999999999999999888 89999999997655
No 190
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=95.43 E-value=0.034 Score=40.99 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=38.6
Q ss_pred CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc---------CCCCccccCeeeec
Q 034147 44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---------GIHSMFVPMVRLSC 100 (103)
Q Consensus 44 ~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~---------~l~~~~~~~~i~~~ 100 (103)
.+.....|....+|+++++.|.++.++||++... +...+..+ ++.++| |.|++.
T Consensus 179 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~y-t~~~M~yl~g~~~~~~~dW~dlF--DvVIv~ 241 (448)
T PF05761_consen 179 EKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDY-TNAVMSYLLGPFLGEDPDWRDLF--DVVIVD 241 (448)
T ss_dssp CCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHH-HHHHHHHHCGCCSSTTT-GGGCE--CEEEES
T ss_pred HHHccCCchHHHHHHHHHhcCceEEEecCCCCch-hhhhhhhccCCCCCCCCChhhhe--eEEEEc
Confidence 3444556889999999999999999999999888 68888864 355678 777764
No 191
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=95.21 E-value=0.049 Score=42.52 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=39.8
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
..++.|++.+.+++|++.|+++.++||-+... +....+++|+.+
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~~ 483 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDHLAI-AKETARRLGLGT 483 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCC
Confidence 34688999999999999999999999999888 899999999964
No 192
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=95.17 E-value=0.2 Score=35.05 Aligned_cols=64 Identities=23% Similarity=0.395 Sum_probs=45.0
Q ss_pred HhhHHHHHHhhccC---CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCC-CeEEEEeCCCchhHHHH
Q 034147 6 KVKNEALEIIGQFE---NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKT 81 (103)
Q Consensus 6 ~~~~~~~~~~~~~~---~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~i~~~ 81 (103)
.++++...+.+... -.++.+.|-.+|= +.++|...++++.+++.| ++++|+||+..+.+ ..
T Consensus 61 ~I~~~~~~~~~~~g~ea~~pd~vtis~~GE--------------PTLy~~L~elI~~~k~~g~~~tflvTNgslpdv-~~ 125 (296)
T COG0731 61 SILEELKLLLGYKGDEATEPDHVTISLSGE--------------PTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDV-LE 125 (296)
T ss_pred HHHHHHHHHhcccccccCCCCEEEEeCCCC--------------cccccCHHHHHHHHHhcCCceEEEEeCCChHHH-HH
Confidence 34455555555432 3567777766663 447789999999999999 79999999998663 44
Q ss_pred HHH
Q 034147 82 FLH 84 (103)
Q Consensus 82 ~l~ 84 (103)
.+.
T Consensus 126 ~L~ 128 (296)
T COG0731 126 ELK 128 (296)
T ss_pred Hhc
Confidence 443
No 193
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=95.00 E-value=0.072 Score=42.57 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=39.1
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.++.|++.+.+++|++.|+++.++||-.... +....+.+|+..
T Consensus 578 Dplr~~~~~aI~~l~~aGI~v~miTGD~~~t-A~~iA~~~GI~~ 620 (941)
T TIGR01517 578 DPLRPGVREAVQECQRAGITVRMVTGDNIDT-AKAIARNCGILT 620 (941)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCCC
Confidence 4688999999999999999999999999888 899999999863
No 194
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=94.90 E-value=0.015 Score=37.58 Aligned_cols=19 Identities=21% Similarity=-0.008 Sum_probs=15.1
Q ss_pred CceEEEeCCCCcccccccc
Q 034147 22 PRLVVFDLDYTLWPFYCEC 40 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~ 40 (103)
+++++||.||||++....+
T Consensus 1 i~~i~fDktGTLt~~~~~v 19 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV 19 (215)
T ss_dssp ESEEEEECCTTTBESHHEE
T ss_pred CeEEEEecCCCcccCeEEE
Confidence 4689999999999865443
No 195
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=94.88 E-value=0.02 Score=42.11 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=38.1
Q ss_pred CCCCceEEEeCCCCccccccccc--c-cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147 19 ENLPRLVVFDLDYTLWPFYCECC--Y-EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 19 ~~~~~~~~fD~DGTL~~~~~~~~--~-~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
..+.+++++|+||||+..+.-.+ . -++. --..|+..+.-..-.+|+++.-.|+++...
T Consensus 372 r~n~kiVVsDiDGTITkSD~~Ghv~~miGkd-wth~gVAkLYtdI~rNGYkI~YltsR~~Gq 432 (580)
T COG5083 372 RNNKKIVVSDIDGTITKSDALGHVKQMIGKD-WTHNGVAKLYTDIDRNGYKIKYLTSRSYGQ 432 (580)
T ss_pred eCCCcEEEEecCCcEEehhhHHHHHHHhccc-hhhcchhhhhhhhccCceEEEEEecccccc
Confidence 45678999999999997432100 0 0110 112466777777788999999999888543
No 196
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=94.88 E-value=0.36 Score=28.03 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=49.7
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHH
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~ 82 (103)
.++..++...+.+.. ...+.+++|+-++=.-. ..-......+.++++++|..+.++.-++ . +...
T Consensus 22 ~~~~~~~~l~~~~~~--~~~~~vilDls~v~~iD----------ssgi~~L~~~~~~~~~~g~~l~l~~~~~--~-v~~~ 86 (106)
T TIGR02886 22 TAERVRRKIDDAIER--RPIKHLILNLKNVTFMD----------SSGLGVILGRYKKIKNEGGEVIVCNVSP--A-VKRL 86 (106)
T ss_pred hHHHHHHHHHHHHHh--CCCCEEEEECCCCcEec----------chHHHHHHHHHHHHHHcCCEEEEEeCCH--H-HHHH
Confidence 345566666665543 24678999999985421 1111234567888999999998775444 4 4788
Q ss_pred HHHcCCCCcc
Q 034147 83 LHKLGIHSMF 92 (103)
Q Consensus 83 l~~~~l~~~~ 92 (103)
++..|+.+.+
T Consensus 87 l~~~gl~~~~ 96 (106)
T TIGR02886 87 FELSGLFKII 96 (106)
T ss_pred HHHhCCceEE
Confidence 9999988765
No 197
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=94.79 E-value=0.015 Score=36.99 Aligned_cols=13 Identities=46% Similarity=0.452 Sum_probs=11.3
Q ss_pred EEEeCCCCccccc
Q 034147 25 VVFDLDYTLWPFY 37 (103)
Q Consensus 25 ~~fD~DGTL~~~~ 37 (103)
++||+||||+..+
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999854
No 198
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=94.76 E-value=0.063 Score=43.18 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=38.5
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++.|++.+.+++++++|+++.++||++... +....+.+|+.
T Consensus 567 Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~t-a~~ia~~~gi~ 608 (997)
T TIGR01106 567 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKGVGII 608 (997)
T ss_pred CCChHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence 4678999999999999999999999999888 79999999984
No 199
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=94.67 E-value=0.085 Score=42.10 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=38.9
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.++.+++.+.+++|++.|+++.++||..... +....+++|+..
T Consensus 536 Dplr~~v~e~I~~l~~aGI~v~miTGD~~~t-A~~ia~~~gi~~ 578 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAGIRVIMITGDNKET-AEAICRRIGIFS 578 (917)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEecCCCHHH-HHHHHHHcCCCC
Confidence 4688999999999999999999999999777 799999999854
No 200
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=94.60 E-value=0.35 Score=36.61 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=54.5
Q ss_pred cHHHhhHHHHHHhh------ccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147 3 DLEKVKNEALEIIG------QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP 76 (103)
Q Consensus 3 ~~~~~~~~~~~~~~------~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~ 76 (103)
+++..+++..+.+. ......+.+++|+.++-.- .........++.++++++|+.+.++.-+ +
T Consensus 469 na~~~~~~l~~~~~~~~~~~~~~~~~~~vIlD~~~V~~i----------DsSg~~~L~~l~~~l~~~g~~l~l~~~~--~ 536 (563)
T TIGR00815 469 NAEDLKDRLLKRIEDETRRELERPPLQVVILDMSAVPHL----------DTSGIHALEELRKELKARGIQLLLANPN--K 536 (563)
T ss_pred cHHHHHHHHHHHHhhhccccccCCCceEEEEECCCCCcc----------hHHHHHHHHHHHHHHHHcCCEEEEecCC--h
Confidence 45666666655554 2222358899999886432 1122345677888999999999877544 3
Q ss_pred hHHHHHHHHcCCCCccccCeeee
Q 034147 77 DIAKTFLHKLGIHSMFVPMVRLS 99 (103)
Q Consensus 77 ~i~~~~l~~~~l~~~~~~~~i~~ 99 (103)
. .++.+++.|+.+.+..+.++.
T Consensus 537 ~-v~~~l~~~gl~~~~~~~~~f~ 558 (563)
T TIGR00815 537 A-VRSTLKRGGLVELIGEEHFFP 558 (563)
T ss_pred H-HHHHHHHCCchhhcCCcceeC
Confidence 4 488899999887664445554
No 201
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=94.46 E-value=0.19 Score=40.72 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=39.4
Q ss_pred CceEE--EeCCCCcccccccccccCCCcccChhHHHHHHHHH----HCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 22 PRLVV--FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALK----EKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 22 ~~~~~--fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~----~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++++ .|+|+| .. ..+.+.++++.++ +..+-++++||++... +...++..++.
T Consensus 770 ~~~~via~D~d~~-~~-------------~~~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~-~~~~l~~~~lp 828 (1050)
T TIGR02468 770 KRLFVIAVDCYDD-KD-------------LLQIIKNIFEAVRKERMEGSSGFILSTSMTISE-IQSFLKSGGLN 828 (1050)
T ss_pred ceEEEEEeccCCC-CC-------------hHHHHHHHHHHHhccccCCceEEEEEcCCCHHH-HHHHHHhCCCC
Confidence 45555 799999 32 1245667777776 2337899999999998 69999999986
No 202
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=94.44 E-value=0.53 Score=27.43 Aligned_cols=72 Identities=24% Similarity=0.249 Sum_probs=47.0
Q ss_pred HHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH
Q 034147 4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83 (103)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l 83 (103)
++..+++..+.... ...+.+++|+-|+-+-. ..-..-..++.++++++|..+.++.-++ . +...+
T Consensus 25 a~~~~~~l~~~~~~--~~~~~vvlDls~v~~iD----------ssg~~~l~~~~~~~~~~g~~l~l~g~~~--~-v~~~l 89 (109)
T cd07041 25 AEQLQERLLEAISR--RRARGVIIDLTGVPVID----------SAVARHLLRLARALRLLGARTILTGIRP--E-VAQTL 89 (109)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEECCCCchhc----------HHHHHHHHHHHHHHHHcCCeEEEEeCCH--H-HHHHH
Confidence 44555555554432 24678999998886531 1122345667788889999998775444 4 37788
Q ss_pred HHcCCCC
Q 034147 84 HKLGIHS 90 (103)
Q Consensus 84 ~~~~l~~ 90 (103)
+..|+..
T Consensus 90 ~~~gl~~ 96 (109)
T cd07041 90 VELGIDL 96 (109)
T ss_pred HHhCCCh
Confidence 9988865
No 203
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=94.32 E-value=0.14 Score=40.60 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=41.4
Q ss_pred CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 44 ~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
+...+|.+++.+.++.+++.|++|..+||-.... |..+.++.|+...
T Consensus 580 Gi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~T-A~AI~r~iGi~~~ 626 (972)
T KOG0202|consen 580 GILDPPRPEVADAIELCRQAGIRVIMITGDNKET-AEAIAREIGIFSE 626 (972)
T ss_pred eccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHH-HHHHHHHhCCCcC
Confidence 3445788999999999999999999999999888 8999999997654
No 204
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.16 Score=36.16 Aligned_cols=56 Identities=20% Similarity=0.046 Sum_probs=41.4
Q ss_pred CceEEEeCCCCccccccccc---------ccCCCcccChhHHHHHHHHHHCC-CeEEEEeCCCchh
Q 034147 22 PRLVVFDLDYTLWPFYCECC---------YEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPD 77 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~---------~~~~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~ 77 (103)
.-.++.|+|.|+...+.--. .......++||+..+.+.|...| .++..+||++...
T Consensus 161 ~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~ 226 (373)
T COG4850 161 GIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQL 226 (373)
T ss_pred ceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHh
Confidence 34578899999987543211 11223458899999999999988 8999999999543
No 205
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=94.22 E-value=0.11 Score=41.24 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=38.5
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++.|++.+.+++|++.|+++.++||-+... +....+++|+.
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~t-A~aIA~~lGI~ 555 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIV-TARICQEVGID 555 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence 4678999999999999999999999999877 89999999995
No 206
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.19 E-value=0.13 Score=40.94 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=52.7
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
..-++.+=+||+|+-.. .-...+.|++...++.|++.|++++.+||-+... ++...++.|++..+
T Consensus 702 g~tvv~v~vn~~l~gv~------~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a-A~svA~~VGi~~V~ 766 (951)
T KOG0207|consen 702 GQTVVYVAVNGQLVGVF------ALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAA-ARSVAQQVGIDNVY 766 (951)
T ss_pred CceEEEEEECCEEEEEE------EeccccchhHHHHHHHHHhcCceEEEEcCCCHHH-HHHHHHhhCcceEE
Confidence 35567889999998632 2234577999999999999999999999999888 89999999965543
No 207
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=94.06 E-value=0.12 Score=41.32 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=38.7
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++.|++.+.+++|++.|+++.++||-+... +....+++|+.
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~ 590 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTGDSELV-AAKVCHEVGLD 590 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence 4678999999999999999999999999887 89999999995
No 208
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=93.78 E-value=0.13 Score=41.01 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=39.1
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
..++.|++.+.+++|++.|+++.++||-+... +....+++|+.
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~aIA~~lGI~ 590 (903)
T PRK15122 548 LDPPKESAAPAIAALRENGVAVKVLTGDNPIV-TAKICREVGLE 590 (903)
T ss_pred cCccHHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence 34688999999999999999999999999887 89999999995
No 209
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=93.55 E-value=0.17 Score=41.03 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=38.7
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++.|++.+.+++|++.|+++.++||..... +....+.+|+.
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~t-A~~iA~~~Gi~ 686 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTGDFPET-AKAIAQEVGII 686 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCC
Confidence 3678999999999999999999999999888 89999999985
No 210
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=93.48 E-value=0.12 Score=32.62 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.3
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRS 73 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~ 73 (103)
..+.|++.+++++|-+. +.+.|+|..
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaa 92 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAA 92 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEec
Confidence 45779999999999997 899999965
No 211
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=93.03 E-value=0.23 Score=40.34 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=37.8
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
++.|++.+.++.|++.|+++.++||.+... +....++.|+.
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~T-A~~iA~~~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLT-AVHVARECGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence 578999999999999999999999999888 78899999984
No 212
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=92.82 E-value=0.29 Score=39.19 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=40.2
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
..+|.+++.+.++.|++.|+++..+||-.... |....+++|+..-
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~T-A~aIa~~~Gi~~~ 589 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVET-AIAIAKECGIEAE 589 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHHH-HHHHHHHcCCCCC
Confidence 45788999999999999999999999999887 8999999997653
No 213
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=92.65 E-value=1.2 Score=25.74 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=46.7
Q ss_pred HHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 5 EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
...++...+.... ..++.+++|+.++=.-. .....-..++.++++++|..+.++.-++ . ....++
T Consensus 28 ~~~~~~l~~~~~~--~~~~~vvidls~v~~iD----------ssgl~~L~~~~~~~~~~~~~~~l~~~~~--~-~~~~l~ 92 (108)
T TIGR00377 28 PLLREKVTPAAER--TGPRPIVLDLEDLEFMD----------SSGLGVLLGRYKQVRRVGGQLVLVSVSP--R-VARLLD 92 (108)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEECCCCeEEc----------cccHHHHHHHHHHHHhcCCEEEEEeCCH--H-HHHHHH
Confidence 4445545454443 35778999999874421 1122345667778899998887765433 4 377899
Q ss_pred HcCCCCcc
Q 034147 85 KLGIHSMF 92 (103)
Q Consensus 85 ~~~l~~~~ 92 (103)
..|+...+
T Consensus 93 ~~~l~~~~ 100 (108)
T TIGR00377 93 ITGLLRII 100 (108)
T ss_pred HhChhhee
Confidence 99987755
No 214
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=92.51 E-value=0.29 Score=33.72 Aligned_cols=65 Identities=22% Similarity=0.195 Sum_probs=37.6
Q ss_pred EEEeCCCCccccccccc-----------------ccCCCcccChhHHHHHHHHHHC------CCeEEEEeCCCchhH--H
Q 034147 25 VVFDLDYTLWPFYCECC-----------------YEDEIPYLYPHAKGILEALKEK------GIHVAVASRSPAPDI--A 79 (103)
Q Consensus 25 ~~fD~DGTL~~~~~~~~-----------------~~~~~~~~~~g~~~~l~~l~~~------G~~v~i~T~~~~~~i--~ 79 (103)
|+||-|++|.+.++.-- ..+-..=|+......|.+++++ -++++++|.++.+.- +
T Consensus 124 IAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~Rv 203 (264)
T PF06189_consen 124 IAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERV 203 (264)
T ss_pred EEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHH
Confidence 89999999998543310 1111112444455566666654 478999997764331 2
Q ss_pred HHHHHHcCCC
Q 034147 80 KTFLHKLGIH 89 (103)
Q Consensus 80 ~~~l~~~~l~ 89 (103)
-..++.+|+.
T Consensus 204 I~TLr~Wgv~ 213 (264)
T PF06189_consen 204 IRTLRSWGVR 213 (264)
T ss_pred HHHHHHcCCc
Confidence 3445566654
No 215
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=91.85 E-value=1.5 Score=25.19 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=48.6
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHH
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~ 82 (103)
+++..++...+.... ...+.+++|+-++=+- ...-.....++.+.++++|..+.++.-+ +. +...
T Consensus 22 ~~~~~~~~l~~~~~~--~~~~~vilDls~v~~i----------Dssgl~~L~~l~~~~~~~g~~l~l~~~~--~~-v~~~ 86 (100)
T cd06844 22 SVEQFKEELLHNITN--VAGKTIVIDISALEFM----------DSSGTGVLLERSRLAEAVGGQFVLTGIS--PA-VRIT 86 (100)
T ss_pred hHHHHHHHHHHHHHh--CCCCEEEEECCCCcEE----------cHHHHHHHHHHHHHHHHcCCEEEEECCC--HH-HHHH
Confidence 455566665554432 2467899999887543 1112234567788899999999887544 44 4778
Q ss_pred HHHcCCCCc
Q 034147 83 LHKLGIHSM 91 (103)
Q Consensus 83 l~~~~l~~~ 91 (103)
++..|+...
T Consensus 87 l~~~gl~~~ 95 (100)
T cd06844 87 LTESGLDKG 95 (100)
T ss_pred HHHhCchhh
Confidence 898887653
No 216
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=91.75 E-value=0.49 Score=35.14 Aligned_cols=61 Identities=26% Similarity=0.247 Sum_probs=46.6
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
..+++++=.++++.-. ..-...+.+++.+.+++|++.|+++.++||..... +....+.+|+
T Consensus 326 g~~~~~~a~~~~~~g~------i~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~-a~~ia~~lgi 386 (499)
T TIGR01494 326 GLRVLAVASKETLLGL------LGLEDPLRDDAKETISELREAGIRVIMLTGDNVLT-AKAIAKELGI 386 (499)
T ss_pred CCEEEEEEECCeEEEE------EEecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCc
Confidence 3455555567766531 12234678999999999999999999999999887 7888888876
No 217
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=90.69 E-value=0.42 Score=32.68 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=31.4
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
...+.+|+.++++.|+++++|+.|.|++-... .+..+++.+.
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdv-I~~vL~q~~~ 129 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDV-IEEVLRQAGV 129 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHH-HHHHHHHTT-
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHH-HHHHHHHcCC
Confidence 35678999999999999999999999888666 5888998754
No 218
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=1.6 Score=33.49 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=44.4
Q ss_pred ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe--CCCchhHHHHHHHHcCCCCccccCee
Q 034147 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHSMFVPMVR 97 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T--~~~~~~i~~~~l~~~~l~~~~~~~~i 97 (103)
-+.++|+||-+++..+ ... -...++++...+.|.|++|+| +..+.. +..+...|+- ..|+++.-
T Consensus 256 giAvldldGevl~~~S-----~r~----~~~~eVve~I~~lG~PvvVAtDVtp~P~~-V~KiAasf~A-~ly~P~~d 321 (652)
T COG2433 256 GIAVLDLDGEVLDLES-----RRG----IDRSEVVEFISELGKPVVVATDVTPAPET-VKKIAASFNA-VLYTPDRD 321 (652)
T ss_pred eEEEEecCCcEEeeec-----ccc----CCHHHHHHHHHHcCCceEEEccCCCChHH-HHHHHHHcCC-cccCCccc
Confidence 4568899999998532 111 134678889999999999999 444566 5888888875 34444443
No 219
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=89.96 E-value=0.24 Score=35.78 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=30.0
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
-|....++++|+++|.++.++||++... +..-++.+
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNSPysF-Vd~GM~fl 277 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNSPYSF-VDKGMRFL 277 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCCchhh-hhcCceee
Confidence 3677889999999999999999999888 47665543
No 220
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=89.50 E-value=2.4 Score=23.69 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=45.0
Q ss_pred HHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 5 EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
+..++........ .++.+++|+.++=.- ......-..++.++++++|..+.++.-+ +. ....++
T Consensus 24 ~~~~~~~~~~~~~---~~~~viid~~~v~~i----------Ds~g~~~L~~l~~~~~~~g~~v~i~~~~--~~-~~~~l~ 87 (99)
T cd07043 24 PELREALEELLAE---GPRRLVLDLSGVTFI----------DSSGLGVLLGAYKRARAAGGRLVLVNVS--PA-VRRVLE 87 (99)
T ss_pred HHHHHHHHHHHHc---CCCEEEEECCCCCEE----------cchhHHHHHHHHHHHHHcCCeEEEEcCC--HH-HHHHHH
Confidence 3444444443332 257789999987432 1112234667888889999887765433 35 488899
Q ss_pred HcCCCCcc
Q 034147 85 KLGIHSMF 92 (103)
Q Consensus 85 ~~~l~~~~ 92 (103)
..|+...+
T Consensus 88 ~~gl~~~~ 95 (99)
T cd07043 88 LTGLDRLF 95 (99)
T ss_pred HhCcceee
Confidence 99987655
No 221
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=89.44 E-value=0.66 Score=37.75 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=37.7
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.++.+++.+.++.|++.|+++.++||-.... |....+..|+-.
T Consensus 630 D~lq~~v~etI~~L~~AGIkv~mlTGD~~~T-A~~IA~~~~ii~ 672 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAGIKIWVLTGDKVET-AINIGYSCRLLS 672 (1057)
T ss_pred hhhhhccHHHHHHHHHCCCeEEEEcCCcHHH-HHHHHHHhCCCC
Confidence 4678999999999999999999999999877 788888888754
No 222
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=89.40 E-value=1 Score=32.96 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc---CCCCcc
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMF 92 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~---~l~~~~ 92 (103)
.+..+.++..+++.|.+..+.||+.... +...+... ++..+|
T Consensus 200 d~~~v~~l~~~r~sGKk~fl~Tns~~~y-td~~mt~~~~~dW~~yf 244 (424)
T KOG2469|consen 200 DGTIVPLLSMLRDSGKKTFLHTNSDWDY-TDIFMAFHYGFDWETYF 244 (424)
T ss_pred cCccccchHHHHhhccceEEeeccccch-hhHHHHHHhCCCcceeE
Confidence 3445558889999999999999998776 56666542 455667
No 223
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=89.03 E-value=1.2 Score=30.56 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
++++.++++.|+++|+ ++|+||++.
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~ 169 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDP 169 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCC
Confidence 5899999999998887 788998775
No 224
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=88.64 E-value=3.5 Score=24.43 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=44.6
Q ss_pred hhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
.++..++.+... ..+.+++|+.|+=+-. .....-....++.++..|..+++++-++ .+ ...+...
T Consensus 31 ~~e~~~~~~~~~--~~~~ivIDls~v~~~d----------S~gl~~L~~~~~~~~~~g~~~~l~~i~p--~v-~~~~~~~ 95 (117)
T COG1366 31 LKETLLEVIAAS--GARGLVIDLSGVDFMD----------SAGLGVLVALLKSARLRGVELVLVGIQP--EV-ARTLELT 95 (117)
T ss_pred HHHHHHHHHhcC--CCcEEEEECCCCceec----------hHHHHHHHHHHHHHHhcCCeEEEEeCCH--HH-HHHHHHh
Confidence 444444444332 2344999999985531 1111234556788899998888776655 33 7789999
Q ss_pred CCCCcc
Q 034147 87 GIHSMF 92 (103)
Q Consensus 87 ~l~~~~ 92 (103)
|+...|
T Consensus 96 gl~~~~ 101 (117)
T COG1366 96 GLDKSF 101 (117)
T ss_pred Cchhhc
Confidence 987654
No 225
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=88.45 E-value=4.7 Score=25.61 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=43.1
Q ss_pred hHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCC-eEEEEeCCCchhHHHHHHHHc
Q 034147 8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~-~v~i~T~~~~~~i~~~~l~~~ 86 (103)
+.+...+++...++-.++++|..|-.+++ ++..+.|+.+...|. .++++=|++... .+...++.
T Consensus 54 ~~E~~~il~~i~~~~~~i~Ld~~Gk~~sS--------------~~fA~~l~~~~~~g~~~i~F~IGG~~G~-~~~~~~~a 118 (155)
T PF02590_consen 54 EKEGERILKKIPPNDYVILLDERGKQLSS--------------EEFAKKLERWMNQGKSDIVFIIGGADGL-SEEVRKRA 118 (155)
T ss_dssp HHHHHHHHCTSHTTSEEEEE-TTSEE--H--------------HHHHHHHHHHHHTTS-EEEEEE-BTTB---HHHHHH-
T ss_pred HHHHHHHHhhccCCCEEEEEcCCCccCCh--------------HHHHHHHHHHHhcCCceEEEEEecCCCC-CHHHHhhc
Confidence 34555566666667778999999999973 578889999888887 888888887655 45555554
Q ss_pred C
Q 034147 87 G 87 (103)
Q Consensus 87 ~ 87 (103)
+
T Consensus 119 ~ 119 (155)
T PF02590_consen 119 D 119 (155)
T ss_dssp S
T ss_pred C
Confidence 3
No 226
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=87.72 E-value=0.2 Score=34.51 Aligned_cols=66 Identities=20% Similarity=0.098 Sum_probs=46.8
Q ss_pred CCceEEEeCCCCcccccc--cc--c---------c-c--CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 21 LPRLVVFDLDYTLWPFYC--EC--C---------Y-E--DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~--~~--~---------~-~--~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
..+.+++|+|+||+-... .. . + . .-.+.-.|++.++|...-+. +.+++.|++.... +.+.+.
T Consensus 88 ~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Y-a~~v~D 165 (262)
T KOG1605|consen 88 GRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVY-ADPLLD 165 (262)
T ss_pred CCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHH-HHHHHH
Confidence 468899999999886542 10 0 0 0 11124468999999998886 7888889888777 788888
Q ss_pred HcCC
Q 034147 85 KLGI 88 (103)
Q Consensus 85 ~~~l 88 (103)
.++-
T Consensus 166 ~LD~ 169 (262)
T KOG1605|consen 166 ILDP 169 (262)
T ss_pred HccC
Confidence 7764
No 227
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=87.71 E-value=1.4 Score=26.14 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.+.++.++++|.+++.+|+++...+
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s~l 87 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGSTL 87 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence 5789999999999999999999876654
No 228
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=87.68 E-value=4.9 Score=25.61 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=46.8
Q ss_pred hhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
.+++...+++...+...++++|..|-.+.+ +...+.++.++..|-.++++=|++... ...+++
T Consensus 53 ~~~E~~~il~~i~~~~~vi~Ld~~Gk~~sS--------------e~fA~~l~~~~~~G~~i~f~IGG~~Gl-~~~~~~ 115 (155)
T COG1576 53 KKKEGEAILAAIPKGSYVVLLDIRGKALSS--------------EEFADFLERLRDDGRDISFLIGGADGL-SEAVKA 115 (155)
T ss_pred HHHHHHHHHHhcCCCCeEEEEecCCCcCCh--------------HHHHHHHHHHHhcCCeEEEEEeCcccC-CHHHHH
Confidence 456667777777777799999999999963 578889999999996777777666433 233344
No 229
>PRK04531 acetylglutamate kinase; Provisional
Probab=87.68 E-value=3.2 Score=30.38 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=55.7
Q ss_pred hhHHHHHHhhccCC--CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 7 VKNEALEIIGQFEN--LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 7 ~~~~~~~~~~~~~~--~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
++.++++.++.... .++.++.-+.|.++.. ..+....-|..|++.|.+++|+=|+. +.+ ...++
T Consensus 19 ~~~e~~~~l~~F~~~~~~~~~VIKiGG~~l~~------------~~~~l~~dla~L~~~G~~~VlVHGgg-pqI-~~~l~ 84 (398)
T PRK04531 19 SAKEISQYLKRFSQLDAERFAVIKVGGAVLRD------------DLEALASSLSFLQEVGLTPIVVHGAG-PQL-DAELD 84 (398)
T ss_pred ChhhhHHHHHHHhCcCCCcEEEEEEChHHhhc------------CHHHHHHHHHHHHHCCCcEEEEECCC-HHH-HHHHH
Confidence 34555555555443 3578899999998851 12667788888999999999999888 554 89999
Q ss_pred HcCCCCccccCee
Q 034147 85 KLGIHSMFVPMVR 97 (103)
Q Consensus 85 ~~~l~~~~~~~~i 97 (103)
..|++.-|.+..-
T Consensus 85 ~~gie~~~v~G~R 97 (398)
T PRK04531 85 AAGIEKETVNGLR 97 (398)
T ss_pred HcCCCcEEECCEe
Confidence 9999876543333
No 230
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=86.89 E-value=2.3 Score=26.70 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=28.3
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
..+.+.++++.++++|+++.+-||...+.+.+..++.+
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~i 110 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHL 110 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhC
Confidence 34678999999999999999999876544334444443
No 231
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=86.86 E-value=1.4 Score=26.24 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=25.1
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
.+.+.++++.++++|.+++.+|+.+...+
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 36789999999999999999998876664
No 232
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=85.90 E-value=0.25 Score=33.12 Aligned_cols=41 Identities=5% Similarity=0.029 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
++++.++++.++++|+++ |+||.+... .......++...++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~-~~~~~~~~~~g~~~ 180 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGI-NQHGIYRYGAGYYA 180 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEec-cCCCceEecccHHH
Confidence 689999999999899997 889988665 34445555554433
No 233
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=85.83 E-value=2.1 Score=29.76 Aligned_cols=62 Identities=19% Similarity=0.462 Sum_probs=37.8
Q ss_pred hHHHHHHhhccCC---CCceEEEeCCCCcc-------cccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeC
Q 034147 8 KNEALEIIGQFEN---LPRLVVFDLDYTLW-------PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (103)
Q Consensus 8 ~~~~~~~~~~~~~---~~~~~~fD~DGTL~-------~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~ 72 (103)
.++++++++.... ..+++.+|+|=.-. +.+..+.- ....||...+++++|+++|.++++...
T Consensus 24 ~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~---d~~~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 24 DEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSW---NRKLFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred HHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEE---ChhcCCCHHHHHHHHHHCCCEEEEEeC
Confidence 3445555554443 35889999872111 01101011 124678999999999999999988773
No 234
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=85.79 E-value=1.6 Score=24.62 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=23.5
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCccc
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWP 35 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~ 35 (103)
.++.+++.+.+.++.... .--++++-|||.++
T Consensus 22 sL~EL~~K~~~~l~~~~~-~~~lvL~eDGT~Vd 53 (78)
T cd06539 22 SLQELISKTLDALVITSG-LVTLVLEEDGTVVD 53 (78)
T ss_pred CHHHHHHHHHHHhCCCCC-CcEEEEeCCCCEEc
Confidence 456777777777776543 34488999999997
No 235
>PRK11660 putative transporter; Provisional
Probab=85.56 E-value=6.2 Score=30.04 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=44.8
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHH
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~ 82 (103)
+++..+++..+.. +..+.+++|+.++-.- .........++.+++++ |.++.++.=++ . +.+.
T Consensus 476 n~~~l~~~l~~~~----~~~~~VVlD~~~V~~i----------Dssg~~~L~~l~~~l~~-g~~l~l~~l~~--~-v~~~ 537 (568)
T PRK11660 476 AAERLFTELESRT----EGKRIVVLQWDAVPVL----------DAGGLDAFQRFVKRLPE-GCELRICNLQF--Q-PLRT 537 (568)
T ss_pred eHHHHHHHHHhhC----CCCCEEEEEcCCCCcc----------cHHHHHHHHHHHHHHHC-CCEEEEecCCh--H-HHHH
Confidence 3444555444433 4567799999886432 12233456778889999 99988775444 4 3778
Q ss_pred HHHcCCCC
Q 034147 83 LHKLGIHS 90 (103)
Q Consensus 83 l~~~~l~~ 90 (103)
+++.|+.+
T Consensus 538 l~~~gl~~ 545 (568)
T PRK11660 538 LARAGIQP 545 (568)
T ss_pred HHHCCChh
Confidence 88887755
No 236
>PLN03190 aminophospholipid translocase; Provisional
Probab=84.83 E-value=2.3 Score=35.23 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=35.0
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++.+++.+.++.|++.|+++.++||-.... +.......++-
T Consensus 725 D~lr~~v~~~I~~l~~agi~v~mlTGD~~~t-Ai~IA~s~~Ll 766 (1178)
T PLN03190 725 DKLQQGVPEAIESLRTAGIKVWVLTGDKQET-AISIGYSSKLL 766 (1178)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHhCCC
Confidence 3688999999999999999999999988766 66666666653
No 237
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=84.76 E-value=1.1 Score=30.08 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=20.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 53 AKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.++|++|+++ +.++|+||+..+.+
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~ 25 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKI 25 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHH
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHH
Confidence 46889999986 99999999997664
No 238
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=84.52 E-value=2.3 Score=23.70 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=23.6
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccc
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPF 36 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~ 36 (103)
.++.+++-+.+.++.... .-.++++-|||.++.
T Consensus 20 sL~eL~~K~~~~l~l~~~-~~~l~L~eDGT~Vdd 52 (74)
T smart00266 20 SLEELLSKVCDKLALPDS-PVTLVLEEDGTIVDD 52 (74)
T ss_pred CHHHHHHHHHHHhCCCCC-CcEEEEecCCcEEcc
Confidence 356677777777776544 334889999999973
No 239
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=84.52 E-value=2.9 Score=30.36 Aligned_cols=66 Identities=18% Similarity=0.053 Sum_probs=49.6
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
+-.+++|+.++|+-.++.+. .+....-.||+..++.++. +.+.+++.|+..... +..+++.++-..
T Consensus 189 ~yTLVleledvLVhpdws~~-tGwRf~kRPgvD~FL~~~a-~~yEIVi~sse~gmt-~~pl~d~lDP~g 254 (393)
T KOG2832|consen 189 PYTLVLELEDVLVHPDWSYK-TGWRFKKRPGVDYFLGHLA-KYYEIVVYSSEQGMT-VFPLLDALDPKG 254 (393)
T ss_pred CceEEEEeeeeEeccchhhh-cCceeccCchHHHHHHhhc-ccceEEEEecCCccc-hhhhHhhcCCcc
Confidence 34589999999987544322 3444456699999999998 459999999999777 688888876443
No 240
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=84.18 E-value=0.14 Score=34.80 Aligned_cols=43 Identities=9% Similarity=-0.017 Sum_probs=29.8
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
.+++..+.++.|++.+++++++||++... .......+++..+|
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~-~~~~~~~~g~g~~~ 163 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYY-KRKDGLALDVGPFV 163 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCC-cCCCCCCCCchHHH
Confidence 35788999999999999999999887554 23333444444333
No 241
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=83.98 E-value=4.2 Score=26.19 Aligned_cols=46 Identities=28% Similarity=0.259 Sum_probs=31.3
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC-C-CeEEEEeCC
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-G-IHVAVASRS 73 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~-G-~~v~i~T~~ 73 (103)
+.+|+++||-|.+++-.+ ...+.|.-..-+++++.. | ..++++||+
T Consensus 41 ~~ikavVlDKDNcit~P~--------~~~Iwp~~l~~ie~~~~vygek~i~v~SNs 88 (190)
T KOG2961|consen 41 KGIKAVVLDKDNCITAPY--------SLAIWPPLLPSIERCKAVYGEKDIAVFSNS 88 (190)
T ss_pred cCceEEEEcCCCeeeCCc--------ccccCchhHHHHHHHHHHhCcccEEEEecC
Confidence 368999999999998632 233455566666777653 3 567778754
No 242
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=83.95 E-value=2.7 Score=25.06 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.+.++.++++|.+++.+|+.....+
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (120)
T cd05710 61 KETVAAAKFAKEKGATVIGLTDDEDSPL 88 (120)
T ss_pred hHHHHHHHHHHHcCCeEEEEECCCCCcH
Confidence 6789999999999999999998876654
No 243
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=83.94 E-value=6.3 Score=27.31 Aligned_cols=68 Identities=24% Similarity=0.305 Sum_probs=48.3
Q ss_pred HHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 11 ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 11 ~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
++.+++.... +.++.=+.|.+++. ....+...+-+..|++.|.+++++-|.. +.+ ...++++|+..
T Consensus 14 ~~pyi~~~~~--~~~VIk~gG~~~~~----------~~l~~~~~~di~~l~~~g~~~VlVHGgg-~~i-~~~~~~~g~~~ 79 (284)
T CHL00202 14 ALPYIQKFRG--RIMVIKYGGAAMKN----------LILKADIIKDILFLSCIGLKIVVVHGGG-PEI-NFWLKQLNISP 79 (284)
T ss_pred HHHHHHHHcC--CeEEEEEChHHhcC----------cchHHHHHHHHHHHHHCCCcEEEEeCCc-HHH-HHHHHHCCCCC
Confidence 3445555443 56777889988751 2234456777788899999999999888 453 88899999876
Q ss_pred cc
Q 034147 91 MF 92 (103)
Q Consensus 91 ~~ 92 (103)
.|
T Consensus 80 ~~ 81 (284)
T CHL00202 80 KF 81 (284)
T ss_pred Ee
Confidence 55
No 244
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=83.76 E-value=3.8 Score=31.84 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=43.6
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
..++.|+..++|+++.+. +.+-|+|-+++.. |..+.+-++-...+-.+.|+|.+
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~Y-A~~i~~liDP~~~lF~dRIisrd 252 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDY-ALEIAKLIDPEGKYFGDRIISRD 252 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHH-HHHHHHHhCCCCccccceEEEec
Confidence 456889999999999987 9999999999888 78888877655544347888765
No 245
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=83.16 E-value=7.3 Score=27.01 Aligned_cols=65 Identities=28% Similarity=0.348 Sum_probs=48.3
Q ss_pred ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeee
Q 034147 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS 99 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~ 99 (103)
+.++.=+.|.... ...+++.+.+-+..|+..|++.+|+=|+. +.+ ...+++++++..|.....+|
T Consensus 3 k~~VIK~GG~~~~----------~~~l~~~~~~di~lL~~~G~~~VvVHGgg-p~I-~~~l~~~gie~~f~~glRvT 67 (265)
T COG0548 3 KTIVIKLGGSAME----------DENLLEAFASDIALLKSVGIRPVVVHGGG-PQI-DEMLAKLGIEPEFVKGLRVT 67 (265)
T ss_pred ceEEEEECceeec----------CchHHHHHHHHHHHHHHCCCcEEEEeCCc-hHH-HHHHHHcCCCCeeeCCEEcC
Confidence 4567777888775 22345667777888999999998888888 554 89999999998775544444
No 246
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=83.05 E-value=2.8 Score=26.67 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.++++.++++|.+++.+|+.+...+
T Consensus 86 ~~~i~~~~~ak~~g~~ii~IT~~~~s~l 113 (179)
T TIGR03127 86 ESLVTVAKKAKEIGATVAAITTNPESTL 113 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 6788999999999999999998886664
No 247
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=82.93 E-value=4 Score=24.09 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
....+.++.++++|.+++.+|++....+
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 5689999999999999999998876654
No 248
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=82.17 E-value=3.2 Score=29.39 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=26.1
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
.++|.+.++++.++++|+.+++.||+....
T Consensus 142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~~e 171 (322)
T PRK13762 142 TLYPYLPELIEEFHKRGFTTFLVTNGTRPD 171 (322)
T ss_pred cchhhHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 356789999999999999999999997654
No 249
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=82.13 E-value=4.9 Score=31.97 Aligned_cols=62 Identities=27% Similarity=0.411 Sum_probs=38.4
Q ss_pred hHHHHHHhhccC---CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCC
Q 034147 8 KNEALEIIGQFE---NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS 73 (103)
Q Consensus 8 ~~~~~~~~~~~~---~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~ 73 (103)
+.++.+.+.... -...++.+|+| .|.. .+..-.-...-+|....++++++++|+++++.-.-
T Consensus 279 e~~v~~~i~~~~~~~IP~d~~~lD~~--~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P 343 (772)
T COG1501 279 EDEVLEFIDEMRERDIPLDVFVLDID--FWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINP 343 (772)
T ss_pred HHHHHHHHhhcccccCcceEEEEeeh--hhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEecc
Confidence 344444444332 23577999999 3321 11111122346788899999999999999887743
No 250
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=80.96 E-value=5.4 Score=32.27 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=39.8
Q ss_pred CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
-..+..||+++.++.+++.|+.+--+||.+-.. |+.+..+.|+-..
T Consensus 644 IkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~T-AkAIA~eCGILt~ 689 (1034)
T KOG0204|consen 644 IKDPVRPGVPEAVQLCQRAGITVRMVTGDNINT-AKAIARECGILTP 689 (1034)
T ss_pred ccCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHH-HHHHHHHcccccC
Confidence 345678999999999999999999999999877 8888888887653
No 251
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=80.95 E-value=7.9 Score=21.83 Aligned_cols=64 Identities=22% Similarity=0.355 Sum_probs=39.0
Q ss_pred HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC--CCeEEEEeCCCchhHHHHHHHHc
Q 034147 9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~--G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
+++++.+.. ..+++++.|++-.=. ...++++++++. +.+++++|+...... ....-+.
T Consensus 33 ~~~~~~~~~--~~~d~iiid~~~~~~-----------------~~~~~~~~i~~~~~~~~ii~~t~~~~~~~-~~~~~~~ 92 (112)
T PF00072_consen 33 EEALELLKK--HPPDLIIIDLELPDG-----------------DGLELLEQIRQINPSIPIIVVTDEDDSDE-VQEALRA 92 (112)
T ss_dssp HHHHHHHHH--STESEEEEESSSSSS-----------------BHHHHHHHHHHHTTTSEEEEEESSTSHHH-HHHHHHT
T ss_pred HHHHHHhcc--cCceEEEEEeeeccc-----------------cccccccccccccccccEEEecCCCCHHH-HHHHHHC
Confidence 344555543 247888888532211 235677777663 589999997776553 4444577
Q ss_pred CCCCcc
Q 034147 87 GIHSMF 92 (103)
Q Consensus 87 ~l~~~~ 92 (103)
|...|+
T Consensus 93 g~~~~l 98 (112)
T PF00072_consen 93 GADDYL 98 (112)
T ss_dssp TESEEE
T ss_pred CCCEEE
Confidence 776654
No 252
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=80.81 E-value=2.6 Score=23.73 Aligned_cols=33 Identities=24% Similarity=0.131 Sum_probs=23.2
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccc
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPF 36 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~ 36 (103)
.++.++.-+.+.++... ..-.++++-|||.++.
T Consensus 22 sL~eL~~K~~~~l~l~~-~~~~lvL~eDGTeVdd 54 (78)
T cd01615 22 SLEELLSKACEKLKLPS-APVTLVLEEDGTEVDD 54 (78)
T ss_pred CHHHHHHHHHHHcCCCC-CCeEEEEeCCCcEEcc
Confidence 35667777777777653 2334889999999973
No 253
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=80.29 E-value=4.6 Score=31.93 Aligned_cols=46 Identities=28% Similarity=0.281 Sum_probs=33.4
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC-CCeEEEEeCCCchhH
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDI 78 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~i 78 (103)
..+++++|.|||++.. ... .....|+.|-.. +..+.|+|++.+..+
T Consensus 502 ~~rli~ldyd~t~~~~------~~~------~~~~~l~~L~~dp~n~v~i~s~~~r~~l 548 (732)
T KOG1050|consen 502 KKRLILLDYDLTLIPP------RSI------KAISILKDLCSDPKNIVYIVSGRGRSVL 548 (732)
T ss_pred cceEEEecccccccCC------CCc------hHHHHHHHHhcCCCCeEEEEEccCchhh
Confidence 4789999999999962 111 166777777654 467889999997764
No 254
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=80.16 E-value=3.5 Score=24.46 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
+.+.+.++.++++|.+++.+|+.. .+ .....+.+.
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~--~l-~~~~~~~~~ 91 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGG--KL-LEMAREHGV 91 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCc--hH-HHHHHHcCC
Confidence 578899999999999999999765 24 555565554
No 255
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=79.77 E-value=4.1 Score=25.44 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.+.++.++++|.+++.+|+++...+
T Consensus 93 ~~~~~~~~~a~~~g~~ii~iT~~~~s~l 120 (154)
T TIGR00441 93 KNVLKAIEAAKDKGMKTITLAGKDGGKM 120 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 6788999999999999999998876654
No 256
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=79.57 E-value=3.9 Score=25.99 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
.+.+.++++.++++|.+++.+|+.+...+
T Consensus 114 t~~~i~~~~~ak~~Ga~vI~IT~~~~s~L 142 (177)
T cd05006 114 SPNVLKALEAAKERGMKTIALTGRDGGKL 142 (177)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 36889999999999999999998875553
No 257
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=79.47 E-value=4.8 Score=30.84 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=38.8
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
.+.||.+|-+.+||+-|++.+-|||-++-. +.....+-|.+++.
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~T-Aa~IA~EAGVDdfi 490 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLT-AAAIAAEAGVDDFI 490 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHH-HHHHHHHhCchhhh
Confidence 467999999999999999999999999877 78888888987754
No 258
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=78.86 E-value=3.8 Score=24.23 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.++++.++++|++++++|++....+
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~l 101 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSPL 101 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChh
Confidence 5688899999999999999998876553
No 259
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=78.42 E-value=14 Score=25.86 Aligned_cols=46 Identities=22% Similarity=0.432 Sum_probs=30.2
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeC
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~ 72 (103)
.+++.+|.+-. +...++ .-....+|...+++++|+++|+++++...
T Consensus 46 ~d~i~iD~~w~--~~~g~f---~~d~~~FPdp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 46 NGQIEIDDNWE--TCYGDF---DFDPTKFPDPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred CCeEEeCCCcc--ccCCcc---ccChhhCCCHHHHHHHHHHCCCeEEEEEC
Confidence 57888887532 100000 11123678899999999999999988663
No 260
>PRK13937 phosphoheptose isomerase; Provisional
Probab=78.30 E-value=5 Score=25.98 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=24.7
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
.+.+.++++.++++|.+++.+|+.+...+
T Consensus 119 t~~~~~~~~~ak~~g~~~I~iT~~~~s~L 147 (188)
T PRK13937 119 SPNVLAALEKARELGMKTIGLTGRDGGKM 147 (188)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 36789999999999999999998876554
No 261
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=78.29 E-value=4.9 Score=25.61 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
.+.+.++++.++++|.+++.+|+.....+
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 36788999999999999999998876654
No 262
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=78.21 E-value=12 Score=26.26 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=36.2
Q ss_pred hHHHHHHhhccCC---CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe
Q 034147 8 KNEALEIIGQFEN---LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 8 ~~~~~~~~~~~~~---~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T 71 (103)
.+++++++....+ ..+++.+|+|..=-..+..++ -....||...+++++|+++|+++++..
T Consensus 23 ~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~---~d~~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 23 QEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWK---FDPERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred HHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEE---EChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 3444554444433 357889998632100000101 123467889999999999999988765
No 263
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=77.88 E-value=3.8 Score=27.15 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=38.1
Q ss_pred EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
++.=+-|+++.. . . .. ++.+.+.+..+++.|.+++|++|.. .. +...++.+++...+
T Consensus 3 ~ViK~GGs~l~~-----~-~--~~-~~~~~~~i~~l~~~g~~vvvV~g~g-~~-~~~~~~~~~~~~~~ 59 (242)
T PF00696_consen 3 IVIKLGGSSLTD-----K-D--EE-LRELADDIALLSQLGIKVVVVHGGG-SF-TDELLEKYGIEPKF 59 (242)
T ss_dssp EEEEE-HHGHSS-----H-S--HH-HHHHHHHHHHHHHTTSEEEEEESSH-HH-HHHHHHHCTHTTSE
T ss_pred EEEEECchhhCC-----c-h--HH-HHHHHHHHHHHHhCCCeEEEEECCh-hh-cCchHHhccCCccc
Confidence 455566776641 0 0 12 4566677777778899999999988 45 58888988766543
No 264
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=77.74 E-value=3.3 Score=27.91 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=25.3
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAP 76 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~ 76 (103)
+.+.+...++++++++.|+++.+-||+...
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 334578999999999999999999999853
No 265
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=76.62 E-value=28 Score=25.67 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=31.1
Q ss_pred CCCcccChhHHHHHHHHHHCCCeEEEE-eCCC---chhHHHHHHHHcCCC
Q 034147 44 DEIPYLYPHAKGILEALKEKGIHVAVA-SRSP---APDIAKTFLHKLGIH 89 (103)
Q Consensus 44 ~~~~~~~~g~~~~l~~l~~~G~~v~i~-T~~~---~~~i~~~~l~~~~l~ 89 (103)
+.....+|.+.++++.+++.|+++++. ||+. .... ...+..++++
T Consensus 82 GGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~-~~~L~~~gld 130 (404)
T TIGR03278 82 GGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEI-AEFLIDNGVR 130 (404)
T ss_pred CcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHH-HHHHHHcCCC
Confidence 334456789999999999999999995 8754 3332 3344555554
No 266
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=76.59 E-value=7.9 Score=23.63 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=35.0
Q ss_pred CCce-EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 21 LPRL-VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 21 ~~~~-~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
..++ ++|=+||+-+-..- .....+ ...+|...++++++.+.|+++.+|..+.
T Consensus 33 g~dV~iF~t~dG~~l~~K~-~~ekik-~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 33 GYDVTIFFTMDGVTLVKKK-VAEKIK-HPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred CCceEEEEEeccceeeeec-chhhhc-CCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 3555 67799998653110 001122 2456889999999999999999998554
No 267
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=76.58 E-value=13 Score=23.71 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=24.7
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
.+.+.+.++++.+++.|+.+.+.||+....
T Consensus 74 ll~~~l~~li~~~~~~g~~v~i~TNg~~~~ 103 (191)
T TIGR02495 74 TLQAGLPDFLRKVRELGFEVKLDTNGSNPR 103 (191)
T ss_pred cCcHhHHHHHHHHHHCCCeEEEEeCCCCHH
Confidence 345668899999999999999999887554
No 268
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=76.33 E-value=17 Score=23.11 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=41.9
Q ss_pred hHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCC-eEEEEeCCCchhHHHHHHHH
Q 034147 8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHK 85 (103)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~-~v~i~T~~~~~~i~~~~l~~ 85 (103)
++++..+++...+.-.+|++|-.|-.+++ +...+.++.....|. .++++=|++... .+...++
T Consensus 54 ~~E~~~il~~l~~~~~~i~LDe~Gk~~sS--------------~~fA~~l~~~~~~g~~~i~F~IGGa~G~-~~~v~~~ 117 (157)
T PRK00103 54 AKEGERILAALPKGARVIALDERGKQLSS--------------EEFAQELERWRDDGRSDVAFVIGGADGL-SPAVKKR 117 (157)
T ss_pred HHHHHHHHhhCCCCCEEEEEcCCCCcCCH--------------HHHHHHHHHHHhcCCccEEEEEcCcccc-CHHHHHh
Confidence 34444455554444467999999999873 567888888888775 687788776443 3444443
No 269
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=75.10 E-value=19 Score=26.45 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=49.8
Q ss_pred HHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 11 ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 11 ~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
++..++.... +.++.=+.|.++.. . -.+.+.+-+..|++.|++++++-|+. +.+ ...++++|++.
T Consensus 8 ~~~~i~~~~~--~~~ViK~GG~~~~~----------~-~~~~~~~~i~~l~~~g~~~vlVHGgg-~~i-~~~~~~~g~~~ 72 (429)
T TIGR01890 8 AAPYINAHRG--KTFVVGLGGELVEG----------G-NLGNIVADIALLHSLGVRLVLVHGAR-PQI-ERILAARGRTP 72 (429)
T ss_pred hhHHHHHhCC--CEEEEEEChhhccC----------c-cHHHHHHHHHHHHHCCCcEEEEcCCC-HHH-HHHHHHcCCCc
Confidence 4455555432 56888899988741 1 11456677778888999999999988 564 88999999987
Q ss_pred ccccC
Q 034147 91 MFVPM 95 (103)
Q Consensus 91 ~~~~~ 95 (103)
.|.+-
T Consensus 73 ~~~~G 77 (429)
T TIGR01890 73 HYHRG 77 (429)
T ss_pred eeeCC
Confidence 66543
No 270
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=74.71 E-value=5.5 Score=21.68 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHCCCeEEEEe
Q 034147 51 PHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T 71 (103)
+.+.+++++++++|.+++.+|
T Consensus 61 ~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 61 EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 678899999999999999888
No 271
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=74.47 E-value=7.6 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.++++.++++|.+++.+|+.....+
T Consensus 125 ~~~i~~~~~ak~~g~~iI~iT~~~~s~l 152 (192)
T PRK00414 125 GNIIKAIEAARAKGMKVITLTGKDGGKM 152 (192)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 6788999999999999999998876654
No 272
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=73.91 E-value=12 Score=22.35 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHCCC--eEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 51 PHAKGILEALKEKGI--HVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~--~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
+.+.++++.|++.|. ..+++-|+.... ....+..+|++.+|
T Consensus 65 ~~~~~~~~~L~~~~~~~i~i~~GG~~~~~-~~~~~~~~G~d~~~ 107 (122)
T cd02071 65 TLFPEVIELLRELGAGDILVVGGGIIPPE-DYELLKEMGVAEIF 107 (122)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCHH-HHHHHHHCCCCEEE
Confidence 567889999999855 234455555454 35667889987665
No 273
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=73.86 E-value=3.2 Score=20.70 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~ 85 (103)
.++.++|++.|++.+-+|.+.+.. ....+..
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~v-y~kkL~~ 39 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKL-YEKKLRK 39 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHH-HHHHHHH
Confidence 578889999999999999988776 3655554
No 274
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=73.85 E-value=6.9 Score=22.19 Aligned_cols=32 Identities=22% Similarity=0.051 Sum_probs=22.8
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccc
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPF 36 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~ 36 (103)
.++.+.+.+.+.++.. ..--++++-|||.++.
T Consensus 22 sL~EL~~K~~~~L~~~--~~~~lvLeeDGT~Vd~ 53 (81)
T cd06537 22 SLQELLAKALETLLLS--GVLTLVLEEDGTAVDS 53 (81)
T ss_pred CHHHHHHHHHHHhCCC--CceEEEEecCCCEEcc
Confidence 4566777777777653 2345899999999973
No 275
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=73.83 E-value=4.2 Score=27.92 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=27.4
Q ss_pred CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147 44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 44 ~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
++.....+.+.++++.+++.|+++++.||+....
T Consensus 92 GEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~ 125 (260)
T COG1180 92 GEPTLQAEFALDLLRAAKERGLHVALDTNGFLPP 125 (260)
T ss_pred CcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence 3334455889999999999999999999888543
No 276
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=73.79 E-value=6.4 Score=26.22 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=23.5
Q ss_pred ccChh-HHHHHHHHHHCCCeEEEEeCCCc
Q 034147 48 YLYPH-AKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 48 ~~~~g-~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
.++++ +.++++.+++.|+.+++-||+..
T Consensus 50 llq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 50 LMQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred HcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 34454 68999999999999999999864
No 277
>PRK13938 phosphoheptose isomerase; Provisional
Probab=73.44 E-value=7.9 Score=25.45 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
.+.+.+.++.++++|.+++.+|+.+...+
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~~s~L 154 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGESGGQL 154 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 36789999999999999999998876554
No 278
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=73.10 E-value=12 Score=21.72 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
+...++.++++++|+.++.+|..+... ...+.+..++.
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~-~~~~~~~~~~~ 83 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEE-IKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHH-HHHHHHHHTCS
T ss_pred hHHHHHhhhhccceEEeeecccccccc-hhhhhhhhccc
Confidence 556677788888899999999988777 48888888753
No 279
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=72.88 E-value=20 Score=24.48 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 52 g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
-..+++++|++.|+.|+-+++-.... -....+.+|+.
T Consensus 197 ~l~~iI~~l~~~g~~VvAivsD~g~~-N~~~w~~Lgi~ 233 (236)
T PF12017_consen 197 ILKNIIEKLHEIGYNVVAIVSDMGSN-NISLWRELGIS 233 (236)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCcc-hHHHHHHcCCC
Confidence 34778999999998876555433333 25567888874
No 280
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=72.45 E-value=9.3 Score=27.24 Aligned_cols=60 Identities=15% Similarity=0.287 Sum_probs=37.8
Q ss_pred hhHHHHHHhhccCC---CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe
Q 034147 7 VKNEALEIIGQFEN---LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 7 ~~~~~~~~~~~~~~---~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T 71 (103)
...+++++...... ..+++.+|+|=. +.+.++. -....||...+++++|+++|+++++..
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~--~~~~~Ft---~d~~~FPdp~~mv~~L~~~G~klv~~i 84 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ--DNYRTFT---TNGGGFPNPKEMFDNLHNKGLKCSTNI 84 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh--cCCCcee---ecCCCCCCHHHHHHHHHHCCCeEEEEe
Confidence 34445555554433 358899998743 2211111 112467888999999999999987765
No 281
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=72.31 E-value=11 Score=25.99 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=32.5
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
..||-...=+.|++.|+|.+|+|-.+... ....++..|+..
T Consensus 72 a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~~d~l~~~g~GY 112 (277)
T PRK00994 72 AAPGPKKAREILKAAGIPCIVIGDAPGKK-VKDAMEEQGLGY 112 (277)
T ss_pred CCCCchHHHHHHHhcCCCEEEEcCCCccc-hHHHHHhcCCcE
Confidence 34666677778889999999999888777 578888888753
No 282
>PRK00942 acetylglutamate kinase; Provisional
Probab=71.88 E-value=29 Score=23.92 Aligned_cols=66 Identities=26% Similarity=0.276 Sum_probs=43.9
Q ss_pred HHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 12 LEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 12 ~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
...+...+ .+.++.=+.|+++.. . ...+.+.+-+..+++.|.++++++|.. .. +...++.++....
T Consensus 15 ~~yi~~~~--~~~iViK~GGs~l~~-------~---~~~~~l~~~i~~l~~~g~~vVlVhGgg-~~-~~~~~~~~g~~~~ 80 (283)
T PRK00942 15 LPYIQRFM--GKTIVIKYGGNAMTD-------E---ELKEAFARDIVLLKQVGINPVVVHGGG-PQ-IDELLKKLGIESE 80 (283)
T ss_pred HHHHHHHc--CCeEEEEEChHHhcC-------c---chHHHHHHHHHHHHHCCCCEEEEeCCh-HH-HHHHHHHCCCCcE
Confidence 33444433 345788899999852 1 122345566677889999999999887 45 4888888877643
No 283
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=71.60 E-value=5.6 Score=24.37 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEeC
Q 034147 51 PHAKGILEALKEKGIHVAVASR 72 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~ 72 (103)
|.+.+++++.+++|.+++.+||
T Consensus 117 ~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 117 PNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 6778888888888888888875
No 284
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=71.49 E-value=13 Score=20.88 Aligned_cols=34 Identities=24% Similarity=0.111 Sum_probs=23.7
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCccccc
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFY 37 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~ 37 (103)
.++.+.+.+.+.++......+ ++++-|||.++.+
T Consensus 22 sL~eL~~K~~~~l~~~~~~~~-lvL~eDGT~VddE 55 (78)
T PF02017_consen 22 SLEELLEKACDKLQLPEEPVR-LVLEEDGTEVDDE 55 (78)
T ss_dssp SHHHHHHHHHHHHT-SSSTCE-EEETTTTCBESSC
T ss_pred CHHHHHHHHHHHhCCCCcCcE-EEEeCCCcEEccH
Confidence 356677777777777653333 6889999999843
No 285
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=70.70 E-value=2.2 Score=27.79 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=19.1
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAP 76 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~ 76 (103)
...++...|..+++. .+++.+|++...
T Consensus 73 ~~q~v~~~L~~~~e~-~~L~~itar~~d 99 (194)
T COG5663 73 LAQLVKQVLPSLKEE-HRLIYITARKAD 99 (194)
T ss_pred HHHHHHHHhHHHHhh-ceeeeeehhhHH
Confidence 445677788888887 577778876643
No 286
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=70.33 E-value=9.8 Score=21.54 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=23.5
Q ss_pred cHHHhhHHHHHHhhccCC-CCceEEEeCCCCcccc
Q 034147 3 DLEKVKNEALEIIGQFEN-LPRLVVFDLDYTLWPF 36 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~fD~DGTL~~~ 36 (103)
.++.+++-+.+.++.... ..-.++++-|||.++.
T Consensus 22 sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~Vdd 56 (80)
T cd06536 22 SLEELRIKACESLGFDSSSAPITLVLAEDGTIVED 56 (80)
T ss_pred CHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEcc
Confidence 356677777777776532 2344889999999973
No 287
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=70.27 E-value=6.5 Score=27.89 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=37.4
Q ss_pred hhHHHHHHhhccCC---CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeC
Q 034147 7 VKNEALEIIGQFEN---LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (103)
Q Consensus 7 ~~~~~~~~~~~~~~---~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~ 72 (103)
..++++++++...+ ..+++.+|+|-+ +....++ -....+|...+++++|+++|+++++...
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~--~~~~~f~---~d~~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT--DGKRYFT---WDKKKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh--CCCCceE---eCcccCCCHHHHHHHHHHCCCEEEEEec
Confidence 34455555555443 257788887632 1111111 1134678899999999999999887663
No 288
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=69.91 E-value=10 Score=24.90 Aligned_cols=28 Identities=7% Similarity=0.113 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.+.++.++++|.+++.+|+.+...+
T Consensus 123 ~~v~~a~~~Ak~~G~~vI~IT~~~~s~l 150 (196)
T PRK10886 123 RDIVKAVEAAVTRDMTIVALTGYDGGEL 150 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 6789999999999999999999876654
No 289
>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function.
Probab=69.80 E-value=14 Score=21.10 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=37.2
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCC
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G 64 (103)
|+++.+.+.|+.+.+-.. -...=|=+|.+....+. ..+...+..-..+++++|+.+.
T Consensus 2 nISk~EQR~LHvLAqGG~--I~~~rd~~gri~~v~C~---TReG~~l~dctl~vF~kLK~kr 58 (85)
T PF09857_consen 2 NISKQEQRVLHVLAQGGR--IRHERDDSGRITAVECY---TREGWLLSDCTLAVFRKLKRKR 58 (85)
T ss_pred CccHHHHHHHHHHhcCCe--EEEEECCCCCEEEEEEE---ccCCeeeCCCCHHHHHHHhhcc
Confidence 457889999999998653 11233778888764432 2223334455788999999864
No 290
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=69.36 E-value=4 Score=26.93 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=24.3
Q ss_pred ccChhHHHHHHHHHH-CCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 48 YLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~-~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.|.|-..+..++|++ .|+..+|+||+++..-+..+.++++..
T Consensus 38 DP~~ls~~~~~~l~a~ggv~~IvLTn~dHvR~A~~ya~~~~a~ 80 (199)
T PF14597_consen 38 DPPPLSAHDWKHLDALGGVAWIVLTNRDHVRAAEDYAEQTGAK 80 (199)
T ss_dssp S-----HHHHHHHHHTT--SEEE-SSGGG-TTHHHHHHHS--E
T ss_pred cCccccHHHHHHHHhcCCceEEEEeCChhHhHHHHHHHHhCCe
Confidence 355667788899988 458899999998655467777777754
No 291
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=69.25 E-value=9.1 Score=26.08 Aligned_cols=29 Identities=7% Similarity=-0.036 Sum_probs=24.7
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
.+.+.++++.++++|.+++.+|+++...+
T Consensus 188 ~~~~~~~~~~ak~~ga~iI~IT~~~~s~l 216 (278)
T PRK11557 188 RRELNLAADEALRVGAKVLAITGFTPNAL 216 (278)
T ss_pred CHHHHHHHHHHHHcCCCEEEEcCCCCCch
Confidence 36688899999999999999999876664
No 292
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=69.04 E-value=10 Score=26.36 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.+.++.++++|++++.+|+.+...+
T Consensus 103 ~~~~~~~~~ak~~g~~vI~iT~~~~s~l 130 (321)
T PRK11543 103 KELDLIIPRLEDKSIALLAMTGKPTSPL 130 (321)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChh
Confidence 6789999999999999999999886654
No 293
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=68.95 E-value=9.9 Score=23.36 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=35.0
Q ss_pred ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe-C-CCchhHHHHHHHHcC
Q 034147 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-R-SPAPDIAKTFLHKLG 87 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T-~-~~~~~i~~~~l~~~~ 87 (103)
-.++||.|.---. ...+...+.++-+.|+++|+.+-+++ + ....-+ +.++-..|
T Consensus 71 v~iaFD~D~~~~T----------n~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~KGi-DD~l~~~G 126 (130)
T PF12965_consen 71 VYIAFDADTKPKT----------NKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGKGI-DDLLAAKG 126 (130)
T ss_pred EEEEecCCCccch----------hHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCCH-hHHHHhcC
Confidence 3489999943211 12244567778888999999999988 2 344553 66665554
No 294
>PLN02512 acetylglutamate kinase
Probab=68.32 E-value=39 Score=23.79 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=40.8
Q ss_pred ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
+.++.=+.|+++.. ......+.+-+..|++.|.+++++=|.. +. ....++.+++...+
T Consensus 48 ~tiVIKlGGs~i~d----------~~~~~~~~~di~~l~~~g~~iVlVHGgG-~~-i~~~~~~~gi~~~~ 105 (309)
T PLN02512 48 KTVVVKYGGAAMKD----------PELKAGVIRDLVLLSCVGLRPVLVHGGG-PE-INSWLKKVGIEPQF 105 (309)
T ss_pred CeEEEEECCeeccC----------hhHHHHHHHHHHHHHHCCCCEEEEECCc-HH-HHHHHHHcCCCCcC
Confidence 55788899998852 1111234555557888999998888877 45 48889999987654
No 295
>PRK15482 transcriptional regulator MurR; Provisional
Probab=68.28 E-value=12 Score=25.76 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
.+.+.++++.++++|.+++.+|+.....+
T Consensus 195 t~~~~~~~~~a~~~g~~iI~IT~~~~s~l 223 (285)
T PRK15482 195 KKEIVLCAEAARKQGATVIAITSLADSPL 223 (285)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 36788999999999999999998886664
No 296
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=67.92 E-value=16 Score=21.29 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 55 ~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
+....+++.|+++++++-.+.+. ++.+.+..++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~ 36 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGF 36 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCC
Confidence 44678889999999999888656 4777766554
No 297
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=67.90 E-value=6 Score=24.79 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=32.5
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
++.+..++=+.|++.|+++.+..|.+... ...+++.+++...+
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~-l~~l~~~~~~~~V~ 93 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEV-LPELAKEYGATAVY 93 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHH-HHHHHHHHTESEEE
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHH-HHHHHHhcCcCeeE
Confidence 44666667788899999999999998777 47888888865443
No 298
>PRK13936 phosphoheptose isomerase; Provisional
Probab=67.80 E-value=10 Score=24.79 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.++++.++++|.+++.+|+.+...+
T Consensus 125 ~~~~~~~~~ak~~g~~iI~IT~~~~s~l 152 (197)
T PRK13936 125 ANVIQAIQAAHEREMHVVALTGRDGGKM 152 (197)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 6688899999999999999998775553
No 299
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=67.71 E-value=13 Score=25.61 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
.+.+.++++.++++|.+++.+|+.....+
T Consensus 200 t~~~~~~~~~ak~~g~~ii~IT~~~~s~l 228 (292)
T PRK11337 200 TSDVIEAVELAKKNGAKIICITNSYHSPI 228 (292)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 36789999999999999999998886664
No 300
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=67.52 E-value=11 Score=25.03 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=28.8
Q ss_pred ccChhHHHHHHHHHHCCCeEEEE-----eCCCchhHHHHHHHHcCCCCcc
Q 034147 48 YLYPHAKGILEALKEKGIHVAVA-----SRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~-----T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
...++-.+.|+.|+++|++++.+ ||+++.+-+...+.++|-+..+
T Consensus 37 ~~~~~~l~~i~~lk~kg~~la~vGdvvGtGSSRKSa~NSvlW~~G~diP~ 86 (204)
T PF06434_consen 37 NRRPGPLEQIEELKEKGHPLAYVGDVVGTGSSRKSATNSVLWHMGEDIPY 86 (204)
T ss_dssp S-BTTSHHHHHHHHTTSS-EEEEEEEEEES---THHHHHHHHHHSEEETT
T ss_pred cccccHHHHHHHHHHcCCcEEEecCccccCcccchhhhhhhhhccCCCCC
Confidence 34567788999999999998654 6777666456777777754433
No 301
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=67.50 E-value=10 Score=19.87 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHCCCeEEEEeC
Q 034147 51 PHAKGILEALKEKGIHVAVASR 72 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~ 72 (103)
|.-.+.|+.|.+.|++|.|.|-
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~ 23 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTY 23 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--H
T ss_pred cHHHHHHHHHHHCCCeEEecCc
Confidence 4567899999999999998874
No 302
>PRK02947 hypothetical protein; Provisional
Probab=66.81 E-value=9.7 Score=25.83 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
+.+.++++.++++|++++.+|+..
T Consensus 120 ~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 120 PVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCc
Confidence 678999999999999999999876
No 303
>PLN02825 amino-acid N-acetyltransferase
Probab=66.54 E-value=26 Score=26.69 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=51.0
Q ss_pred HHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 12 LEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 12 ~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
+-.++... -+.++.=+.|-.+.. . .++....-+..|++.|++++++=|.. +.+ ...++..|++..
T Consensus 9 ~pYI~~~r--gktfVIk~gG~~l~~----------~-~~~~l~~DialL~~lGi~~VlVHGgg-pqI-~~~l~~~gi~~~ 73 (515)
T PLN02825 9 WPYIQGHR--GSTFVVVISGEVVAG----------P-HLDNILQDISLLHGLGIKFVLVPGTH-VQI-DKLLAERGREPK 73 (515)
T ss_pred hHHHHHHC--CCEEEEEECchhhcC----------c-hHHHHHHHHHHHHHCCCCEEEEcCCC-HHH-HHHHHHcCCCce
Confidence 44455443 345666788888741 1 24667777788999999999999888 554 889999999886
Q ss_pred cccCeeee
Q 034147 92 FVPMVRLS 99 (103)
Q Consensus 92 ~~~~~i~~ 99 (103)
|....-+|
T Consensus 74 f~~G~RVT 81 (515)
T PLN02825 74 YVGAYRIT 81 (515)
T ss_pred eeCCcccC
Confidence 65443333
No 304
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=65.99 E-value=25 Score=21.17 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=29.8
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
-.+...++.+++++.|+.++.+|..+... .+.+.+++++.
T Consensus 47 ~~~~l~~~~~~~~~~~v~vi~vs~d~~~~-~~~~~~~~~~~ 86 (149)
T cd03018 47 ELCALRDSLELFEAAGAEVLGISVDSPFS-LRAWAEENGLT 86 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCHHH-HHHHHHhcCCC
Confidence 34666777888888889988888777666 47778877653
No 305
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=65.91 E-value=33 Score=24.12 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=21.6
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeC
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASR 72 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~ 72 (103)
..||...+++++|+++|+++++...
T Consensus 67 ~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 67 KAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred ccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 4678889999999999999988763
No 306
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=65.86 E-value=12 Score=21.11 Aligned_cols=31 Identities=26% Similarity=0.108 Sum_probs=21.9
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCccc
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWP 35 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~ 35 (103)
.++.+.+-+.+.++.. ..-.++++-|||.++
T Consensus 22 sL~eL~~K~~~~l~l~--~~~~lvL~eDGT~Vd 52 (79)
T cd06538 22 SLEDLLNKVLDALLLD--CISSLVLDEDGTGVD 52 (79)
T ss_pred CHHHHHHHHHHHcCCC--CccEEEEecCCcEEc
Confidence 3566677777776663 234488999999996
No 307
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=65.68 E-value=3.9 Score=29.35 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.9
Q ss_pred CCCceEEEeCCCCcccc
Q 034147 20 NLPRLVVFDLDYTLWPF 36 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~ 36 (103)
..++++-||+|.||...
T Consensus 10 ~~i~~~GFDmDyTLa~Y 26 (343)
T TIGR02244 10 EKIQVFGFDMDYTLAQY 26 (343)
T ss_pred ccCCEEEECcccccccc
Confidence 46899999999999974
No 308
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=65.53 E-value=34 Score=22.11 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=33.7
Q ss_pred HHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 11 ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 11 ~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
.++.++........+++|++.+ +. .+. .........+.++++++++.|++++|=|+..
T Consensus 76 f~~~~~~~~~~~~~i~lDiE~~--~~--~~~--~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 76 FLQYLKANGIKYGTVWIDIEQN--PC--QWS--SDVASNCQFLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHhCCCceeEEEEEEecC--CC--CCc--CCHHHHHHHHHHHHHHHHHhCCeEEEEcCcc
Confidence 3344433322344567899864 10 000 1112233567788999999999999999776
No 309
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=65.52 E-value=47 Score=23.74 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=43.1
Q ss_pred HHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 10 ~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
++.++++.+....-.+++-+=|-++. .|+++++..|-++|+.=+++|.+.. +.+.+.+.+|..
T Consensus 42 eA~~I~~~m~~~~~tvfl~~tg~~vs---------------sGlR~iia~LIr~~~idvvVTTgg~--l~hDi~~~lg~~ 104 (318)
T COG1899 42 EAVEILREMLESRVTVFLGLTGNLVS---------------SGLREIIADLIRNGLIDVVVTTGGN--LDHDIIKALGGP 104 (318)
T ss_pred HHHHHHHHHHhhcCEEEEeccccccc---------------hhHHHHHHHHHHcCCeEEEEecCCc--hhHHHHHHcCCC
Confidence 44455554433334567777777775 5899999999998866566664442 247788888865
Q ss_pred Cc
Q 034147 90 SM 91 (103)
Q Consensus 90 ~~ 91 (103)
++
T Consensus 105 ~~ 106 (318)
T COG1899 105 HY 106 (318)
T ss_pred ee
Confidence 54
No 310
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=65.13 E-value=30 Score=22.87 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=20.5
Q ss_pred HHHHHHHHHHCCCeEEEEe----CCCchh
Q 034147 53 AKGILEALKEKGIHVAVAS----RSPAPD 77 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T----~~~~~~ 77 (103)
..+.++++.++|+++|+|| +++...
T Consensus 138 ~~~~~~~~~~~~~~~c~VSpELh~~~~~~ 166 (192)
T cd08584 138 DNDLILKLLKAGKKICLVSPELHGRDHLA 166 (192)
T ss_pred CHHHHHHHHHCCcEEEEECHHHcCCChHH
Confidence 3678889999999999999 666554
No 311
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=64.89 E-value=14 Score=26.22 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.+.++.++++|.+++.+|+.....+
T Consensus 106 ~e~i~al~~ak~~Ga~~I~IT~~~~S~L 133 (340)
T PRK11382 106 EEVIKALELGRACGALTAAFTKRADSPI 133 (340)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence 5789999999999999999999886654
No 312
>PRK14558 pyrH uridylate kinase; Provisional
Probab=64.76 E-value=39 Score=22.53 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=19.9
Q ss_pred HHHHHHHHCCCeEEEEeCCCchhHHHHHH
Q 034147 55 GILEALKEKGIHVAVASRSPAPDIAKTFL 83 (103)
Q Consensus 55 ~~l~~l~~~G~~v~i~T~~~~~~i~~~~l 83 (103)
.+++-+++.|+++.|+++.....+ ...+
T Consensus 192 ~a~~~a~~~gi~v~I~ng~~~~~l-~~~l 219 (231)
T PRK14558 192 EAFSICKKYGITILVINFFEPGNL-LKAL 219 (231)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCHH-HHHH
Confidence 455666788999999998876664 4444
No 313
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=64.51 E-value=6.2 Score=24.31 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=30.2
Q ss_pred CCCceEEEeCCCCcccccccccc-------cCCCcccC-hhHHHHHHHHHHCCCeEEEEe
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCY-------EDEIPYLY-PHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~-------~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T 71 (103)
+.|.++.||+.+|+-.+...... .......| .-..+.|...++.+..++++|
T Consensus 43 ~~P~iV~FDmK~Tld~F~~Q~~~~~lte~q~e~lt~rF~~aL~~~L~~yq~~H~~VILVs 102 (128)
T PRK13717 43 NAPVTAAFNMKQTVDAFFDSASQKQLSEAQSKALSARFNTALEASLQAWQQKHHAVILVS 102 (128)
T ss_pred CCCeEEEEehHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 36889999999998664321110 00111112 223446677777777788877
No 314
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=64.40 E-value=11 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.1
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
+.+.|.+.++++.++++|..+.++||+..
T Consensus 83 PLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 83 PLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred ccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 44668899999999999999999999874
No 315
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=64.38 E-value=17 Score=24.86 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
|.+.+.++.++++|.+++.+|+++...+
T Consensus 132 ~~vi~al~~Ak~~Ga~~I~It~~~~s~L 159 (257)
T cd05007 132 PYVLGALRYARARGALTIGIACNPGSPL 159 (257)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 6789999999999999999998886664
No 316
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=64.27 E-value=13 Score=25.63 Aligned_cols=41 Identities=32% Similarity=0.344 Sum_probs=31.3
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
..||-...=+.|++.|+|.+|+|-.+... +...++.-|+..
T Consensus 71 ~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~GY 111 (276)
T PF01993_consen 71 AAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFGY 111 (276)
T ss_dssp TSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-EE
T ss_pred CCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCcE
Confidence 45777777788899999999999888766 477888888753
No 317
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=63.99 E-value=22 Score=23.90 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHC-CCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 51 PHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 51 ~g~~~~l~~l~~~-G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
+.+.++.+.+++. |.++++++|... .. ...++++++.
T Consensus 23 ~~l~~l~~~l~~l~g~~vvlVhGgg~-~~-~~~~~~~g~~ 60 (252)
T cd04241 23 ENLERIARELAEAIDEKLVLVHGGGS-FG-HPKAKEYGLP 60 (252)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCc-cc-CHHHHHhCCC
Confidence 3455666777776 999999997763 32 6667777765
No 318
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=63.56 E-value=19 Score=25.45 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=23.2
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
+.+...++++.++++|+.+.+.||+.
T Consensus 66 l~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 66 ARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred ccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 55788999999999999999999886
No 319
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=63.43 E-value=25 Score=20.73 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=27.5
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
.-|..+.++.++....+.+|+.++.++. .+..++.+
T Consensus 21 ilG~k~tiK~lk~gkaKliiiAsN~P~~-~k~~ieyY 56 (100)
T COG1911 21 ILGSKRTIKSLKLGKAKLIIIASNCPKE-LKEDIEYY 56 (100)
T ss_pred EEehHHHHHHHHcCCCcEEEEecCCCHH-HHHHHHHH
Confidence 3588999999998777777777777677 37777766
No 320
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=63.42 E-value=18 Score=21.50 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=25.9
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++| ...+-++|+++|+.|.++|+... +...+..|++
T Consensus 11 hv~P-~lala~~L~~rGh~V~~~~~~~~----~~~v~~~Gl~ 47 (139)
T PF03033_consen 11 HVYP-FLALARALRRRGHEVRLATPPDF----RERVEAAGLE 47 (139)
T ss_dssp HHHH-HHHHHHHHHHTT-EEEEEETGGG----HHHHHHTT-E
T ss_pred HHHH-HHHHHHHHhccCCeEEEeecccc----eecccccCce
Confidence 3455 46788999999999999998774 3335777775
No 321
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.39 E-value=11 Score=26.32 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=30.4
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
.+.+|..++++.|+++++|+.|.|.+--..+ +...++-
T Consensus 138 ~lReg~~~ff~~L~~~~IP~~iFSAGigdii-Eev~~q~ 175 (298)
T KOG3128|consen 138 ALREGYEEFFEALQAHEIPLLIFSAGIGDII-EEVTRQK 175 (298)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEecchHHHH-HHHHHHH
Confidence 4567899999999999999999998886663 6655543
No 322
>PRK05279 N-acetylglutamate synthase; Validated
Probab=63.32 E-value=58 Score=23.97 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=48.1
Q ss_pred HHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 10 ~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
+++..++.... +.++.=+.|..+.. .. ...+.+-+..|++.|++++|+=|+. +. +...++++|+.
T Consensus 15 ~~~~~i~~~~~--~~~VIk~GG~~l~~----------~~-~~~~~~~i~~l~~~g~~~VlVHGgg-~~-i~~~~~~~g~~ 79 (441)
T PRK05279 15 HSAPYINAHRG--KTFVIMLGGEAIAH----------GN-FSNIVHDIALLHSLGIRLVLVHGAR-PQ-IEEQLAARGIE 79 (441)
T ss_pred HHhHHHHHhCC--CEEEEEECchhccC----------hh-HHHHHHHHHHHHHCCCeEEEECCCC-HH-HHHHHHHcCCC
Confidence 34445555443 45777788988841 11 2456777778888999999999887 56 48889999998
Q ss_pred Cccc
Q 034147 90 SMFV 93 (103)
Q Consensus 90 ~~~~ 93 (103)
..|.
T Consensus 80 ~~~~ 83 (441)
T PRK05279 80 PRYH 83 (441)
T ss_pred ceec
Confidence 7654
No 323
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=63.32 E-value=11 Score=27.49 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=34.2
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~ 93 (103)
+..+..++=+.|++.|+++.+..|.+... ...+++++++...+.
T Consensus 59 l~esL~~L~~~L~~~g~~L~v~~G~~~~v-l~~L~~~~~~~~V~~ 102 (429)
T TIGR02765 59 LLESLKDLRTSLRKLGSDLLVRSGKPEDV-LPELIKELGVRTVFL 102 (429)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeCCHHHH-HHHHHHHhCCCEEEE
Confidence 44566667788899999999999988777 488888888765443
No 324
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=63.15 E-value=26 Score=21.47 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHCCC-e-EEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 51 PHAKGILEALKEKGI-H-VAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~-~-v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
+.+.++++.|+++|. . .+++-|..... -...++.+|++.+|
T Consensus 68 ~~~~~~~~~L~~~g~~~i~vivGG~~~~~-~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 68 TLVPALRKELDKLGRPDILVVVGGVIPPQ-DFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCChH-hHHHHHHCCCCEEE
Confidence 457888888988864 2 34444434444 25568889987665
No 325
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=62.98 E-value=30 Score=24.76 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=29.4
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCc--hhHHHHHHHHcCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPA--PDIAKTFLHKLGIH 89 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~--~~i~~~~l~~~~l~ 89 (103)
..+.+...+++++++++|+.+.+.||+.. ... ...+...++.
T Consensus 73 Pll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~-~~~L~~~g~~ 116 (378)
T PRK05301 73 PLLRKDLEELVAHARELGLYTNLITSGVGLTEAR-LAALKDAGLD 116 (378)
T ss_pred cCCchhHHHHHHHHHHcCCcEEEECCCccCCHHH-HHHHHHcCCC
Confidence 34567889999999999999999998863 232 2334555543
No 326
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=62.37 E-value=26 Score=26.78 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=18.6
Q ss_pred HHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 55 ~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
+..+-+++.| +.+++|..++-. ++.+++.+
T Consensus 137 e~~~v~~~~~-~~~vv~~~PrvM-ve~Flkey 166 (525)
T PLN02588 137 EMFQVLKRGG-KRVGVSDLPQVM-IDVFLRDY 166 (525)
T ss_pred HHHHHHhhcC-cEEEEecCCHHH-HHHHHHHh
Confidence 3445555545 455566688766 68888764
No 327
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=62.34 E-value=12 Score=26.09 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.+.++.++++|.+++.+|+++...+
T Consensus 108 ~~~~~~~~~ak~~g~~vi~iT~~~~s~l 135 (326)
T PRK10892 108 SEILALIPVLKRLHVPLICITGRPESSM 135 (326)
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCCcc
Confidence 6789999999999999999998886654
No 328
>PRK10658 putative alpha-glucosidase; Provisional
Probab=62.34 E-value=37 Score=26.72 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=22.0
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCC
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRS 73 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~ 73 (103)
..+|...+++++|+++|+++++....
T Consensus 322 ~~FPdp~~mi~~L~~~G~k~~~~i~P 347 (665)
T PRK10658 322 RTFPDPEGMLKRLKAKGLKICVWINP 347 (665)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEeccC
Confidence 45788899999999999999987643
No 329
>PRK06186 hypothetical protein; Validated
Probab=62.28 E-value=15 Score=24.94 Aligned_cols=57 Identities=12% Similarity=-0.031 Sum_probs=38.3
Q ss_pred EEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCe-EEEEeCCCchhHHHHHHHHcCCCC
Q 034147 26 VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIH-VAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 26 ~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~-v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
+-++||.|+.+ +=..+-.+|...++++.+++++| ++||-|-....+ +....-+++.+
T Consensus 51 l~~~dgilvpg-------Gfg~rg~~Gki~ai~~Are~~iP~LGIClGmQ~avI-e~arnv~g~~d 108 (229)
T PRK06186 51 LAGFDGIWCVP-------GSPYRNDDGALTAIRFARENGIPFLGTCGGFQHALL-EYARNVLGWAD 108 (229)
T ss_pred HhhCCeeEeCC-------CCCcccHhHHHHHHHHHHHcCCCeEeechhhHHHHH-HHHhhhcCCcC
Confidence 33778888863 12345568999999999999999 577877664442 44434455554
No 330
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=62.05 E-value=22 Score=22.59 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
-.+.++.+..++.|+++.|+||++. +...+++..-
T Consensus 73 C~Ig~l~~lae~~g~~v~i~~Ggt~---ar~~ik~~~p 107 (158)
T PF01976_consen 73 CDIGDLKKLAEKYGYKVYIATGGTL---ARKIIKEYRP 107 (158)
T ss_pred CchhHHHHHHHHcCCEEEEEcChHH---HHHHHHHhCC
Confidence 3578899999999999999999983 4566666553
No 331
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=61.93 E-value=19 Score=20.22 Aligned_cols=32 Identities=9% Similarity=-0.049 Sum_probs=22.6
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCccc
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWP 35 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~ 35 (103)
.++.+.+.+.+.++...... .++++-|||.+.
T Consensus 22 sL~eL~~K~~~~l~l~~~~~-~l~L~eDGTeVt 53 (77)
T cd06535 22 NLKELLRKGCRLLQLPCAGS-RLCLYEDGTEVT 53 (77)
T ss_pred CHHHHHHHHHHHhCCCCCCc-EEEEecCCcEeh
Confidence 45677777777777655433 378899999883
No 332
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=61.91 E-value=26 Score=23.58 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=30.3
Q ss_pred Chh-HHHHHHHHHHCCCeEEEEeCCCch-----hHHHHHHHHcCCCCcc
Q 034147 50 YPH-AKGILEALKEKGIHVAVASRSPAP-----DIAKTFLHKLGIHSMF 92 (103)
Q Consensus 50 ~~g-~~~~l~~l~~~G~~v~i~T~~~~~-----~i~~~~l~~~~l~~~~ 92 (103)
.|. ..++.+.+++.|++.+|+.+.... .+ +..++.+|+.-.|
T Consensus 61 HPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~l-k~~~e~~gi~~~~ 108 (217)
T PF02593_consen 61 HPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQL-KKQLEEFGIEVEF 108 (217)
T ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCccchHHHH-HHHHHhcCceeec
Confidence 344 457778888899998888766555 64 7778888876555
No 333
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=61.68 E-value=27 Score=23.79 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=26.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH-cCCC
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIH 89 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~-~~l~ 89 (103)
.++++.++++|+++.+.|=+.... .+. +.. +|.+
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~~~~-~~~-l~~~~GVd 252 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNTPTE-KQY-FAKTLNVP 252 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHH-HHH-HHHHhCCC
Confidence 578999999999999999777666 354 455 8874
No 334
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=61.66 E-value=32 Score=20.42 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=29.0
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.+...++.+++++.|+.++.+|..+... +..+.+++++.
T Consensus 43 ~~~l~~~~~~~~~~~~~vv~is~d~~~~-~~~~~~~~~~~ 81 (140)
T cd03017 43 ACDFRDLYEEFKALGAVVIGVSPDSVES-HAKFAEKYGLP 81 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCC
Confidence 3556667777888889988888777676 47778877763
No 335
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=60.99 E-value=8.1 Score=22.02 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 52 g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
++.++.+.|.+.|+.++ +|++.. .+++..|++
T Consensus 1 e~~~~a~~l~~lG~~i~-AT~gTa-----~~L~~~Gi~ 32 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIY-ATEGTA-----KFLKEHGIE 32 (95)
T ss_dssp THHHHHHHHHHTTSEEE-EEHHHH-----HHHHHTT--
T ss_pred CHHHHHHHHHHCCCEEE-EChHHH-----HHHHHcCCC
Confidence 35677788888887765 555542 234566664
No 336
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=60.92 E-value=47 Score=23.37 Aligned_cols=45 Identities=20% Similarity=0.497 Sum_probs=29.9
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T 71 (103)
.+++.+|+|-+ +....++- ....+|...++++.|+++|+++++..
T Consensus 40 ~d~i~lD~~~~--~~~~~f~~---d~~~FPdp~~~i~~l~~~g~k~~~~~ 84 (317)
T cd06600 40 YDVVFLDIHYM--DSYRLFTW---DPYRFPEPKKLIDELHKRNVKLVTIV 84 (317)
T ss_pred cceEEEChhhh--CCCCceee---chhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 57788887643 21111111 13367888999999999999987664
No 337
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=60.76 E-value=25 Score=23.66 Aligned_cols=38 Identities=32% Similarity=0.550 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
+++...+..|.+++..++++|..+.+.+ ..+-++.|+.
T Consensus 93 D~~~g~l~hL~~rd~tfa~vSraP~~~i-~afk~rmGW~ 130 (211)
T PF05988_consen 93 DHIDGALRHLHARDTTFAVVSRAPLEKI-EAFKRRMGWT 130 (211)
T ss_pred hhhhhhHHHHHhCCceEEEEeCCCHHHH-HHHHHhcCCC
Confidence 4444678899999999999999999995 8888888875
No 338
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=60.33 E-value=23 Score=25.31 Aligned_cols=39 Identities=23% Similarity=0.449 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
.....++++|+++|+.+.|.+... .. +..+++.+|++..
T Consensus 14 hfFk~~I~eL~~~GheV~it~R~~-~~-~~~LL~~yg~~y~ 52 (335)
T PF04007_consen 14 HFFKNIIRELEKRGHEVLITARDK-DE-TEELLDLYGIDYI 52 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEEEecc-ch-HHHHHHHcCCCeE
Confidence 456789999999999998666544 66 5889999998654
No 339
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=60.16 E-value=9.4 Score=26.79 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=25.5
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
..+-.+.+.+.++.|+++|++.+|+|+.....
T Consensus 162 ~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~ 193 (308)
T KOG2599|consen 162 EIRTEEDAKRAVEKLHQKGVKTVVITSFDLGE 193 (308)
T ss_pred eeccHHHHHHHHHHHHHhCCCEEEEEeeeeCC
Confidence 34445678999999999999999999877443
No 340
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=59.93 E-value=24 Score=21.17 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~ 87 (103)
+.+.+.++.+.++|.++++.|.+.... ....++.+.
T Consensus 78 ~~~~~~~~~~~~~g~~~ViGTTG~~~~-~~~~l~~~a 113 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIGTTGFSDE-QIDELEELA 113 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE-SSSHHH-HHHHHHHHT
T ss_pred HHhHHHHHHHHhCCCCEEEECCCCCHH-HHHHHHHHh
Confidence 456788899999999999999887555 355566653
No 341
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=59.90 E-value=16 Score=24.63 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.++++.++++|.+++.+|+.....+
T Consensus 61 ~~~~~~~~~a~~~g~~ii~iT~~~~s~l 88 (268)
T TIGR00393 61 LELLNLIPHLKRLSHKIIAFTGSPNSSL 88 (268)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCcc
Confidence 6789999999999999999998876554
No 342
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=59.83 E-value=17 Score=25.97 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAP 76 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~ 76 (103)
+...+.|+++.++|++|+++|.....
T Consensus 251 ~~~~~~l~~~~~~Gi~VV~~Sr~~~G 276 (335)
T PRK09461 251 PALLQELKEASERGIVVVNLTQCMSG 276 (335)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 67889999999999999999855443
No 343
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=59.78 E-value=33 Score=22.92 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=38.5
Q ss_pred Cce-EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc--hhHHHHHHHHcCCCC
Q 034147 22 PRL-VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA--PDIAKTFLHKLGIHS 90 (103)
Q Consensus 22 ~~~-~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~--~~i~~~~l~~~~l~~ 90 (103)
.++ .+||.|.-++-. .... .+..+..++-+.+++.++.++|+|=... .. +...+-..|+..
T Consensus 110 ~~iv~~FDv~~~~VG~------~~~~-v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~-vad~Lv~aGVkG 173 (211)
T COG2344 110 MKIVAAFDVDPDKVGT------KIGD-VPVYDLDDLEKFVKKNDVEIAILTVPAEHAQE-VADRLVKAGVKG 173 (211)
T ss_pred ceEEEEecCCHHHhCc------ccCC-eeeechHHHHHHHHhcCccEEEEEccHHHHHH-HHHHHHHcCCce
Confidence 444 689999887742 2222 3455678888889999999999995442 22 233344445543
No 344
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=59.76 E-value=26 Score=23.28 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
+..+.+-+..+++.|.+++++++.. .. ....++.+++..
T Consensus 15 ~~~~~~~i~~l~~~g~~~VlVhggg-~~-~~~~~~~~~~~~ 53 (231)
T TIGR00761 15 LEAFASDIAFLRAVGIKPVIVHGGG-PE-INELLEALGIPP 53 (231)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCc-HH-HHHHHHHcCCCC
Confidence 4556677778889999999998877 45 488888888654
No 345
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.39 E-value=14 Score=25.46 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=31.9
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++.||+.+.++.|+++ .+-.|+|.+..+. +.......|++
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy-~~r~a~~ig~P 122 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSYTQY-LRRTASMIGVP 122 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccHHHH-HHHHHHhcCCC
Confidence 56789999999999997 4555666666677 48888888874
No 346
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=59.32 E-value=12 Score=26.57 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
|-+..+.+.|+++|++++|+|.+.
T Consensus 52 P~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 52 PLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred HHHHHHHHHHHhcCCceEEEcCCC
Confidence 677889999999999999999544
No 347
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=59.12 E-value=81 Score=24.30 Aligned_cols=73 Identities=16% Similarity=0.352 Sum_probs=43.2
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCC-cccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHH
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYT-LWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGT-L~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~ 81 (103)
+++..+++..+..+. .++.+++|+..+ .|| .....-..++.+.++++|+.+.++.-+. . ...
T Consensus 458 ~~~~~~~~i~~~~~~---~~~~~il~~~~v~~iD-----------~ta~~al~~~~~~~~~~g~~~~i~~~~~--~-~~~ 520 (554)
T COG0659 458 NADRLERALLGLIEE---RPERVILDLKSVPYID-----------ASAAEALEDLIKELERRGIQLLIVGLSA--Q-VLR 520 (554)
T ss_pred eHHHHHHHHHHHHhc---cCCEEEEEcccCCcCC-----------hhHHHHHHHHHHHHHHcCCEEEEeccch--h-hHH
Confidence 445555555555554 355566666552 111 1122345667888999999999887663 3 356
Q ss_pred HHHHcCCCCcc
Q 034147 82 FLHKLGIHSMF 92 (103)
Q Consensus 82 ~l~~~~l~~~~ 92 (103)
.+++.+.....
T Consensus 521 ~l~~~~~~~~i 531 (554)
T COG0659 521 LLRRAGLLYLV 531 (554)
T ss_pred HHHHhcccccc
Confidence 67777765443
No 348
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=58.89 E-value=44 Score=21.16 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=40.8
Q ss_pred HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH
Q 034147 9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (103)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~ 85 (103)
++...++.... .-.+|++|..|-.+++ +...+.|+.....|..++++=|++... .....++
T Consensus 54 ~E~~~il~~~~-~~~~i~LDe~Gk~~sS--------------~~fA~~l~~~~~~g~~i~FvIGGa~G~-~~~v~~~ 114 (153)
T TIGR00246 54 KEGDRILAAIG-KAHVVTLDIPGKPWTT--------------PQLADTLEKWKTDGRDVTLLIGGPEGL-SPTCKAA 114 (153)
T ss_pred HHHHHHHHhCC-CCeEEEEcCCCCcCCH--------------HHHHHHHHHHhccCCeEEEEEcCCCcC-CHHHHHh
Confidence 33444555444 3467899999998863 567788888777776788888877443 3444443
No 349
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=58.83 E-value=29 Score=23.85 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=20.6
Q ss_pred cChhHHHHHHHHHHCCCeEEE-EeCCCch
Q 034147 49 LYPHAKGILEALKEKGIHVAV-ASRSPAP 76 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i-~T~~~~~ 76 (103)
+++...++++.+++.|+..+. +|.++..
T Consensus 127 p~ee~~~~~~~~~~~gl~~I~lvap~t~~ 155 (258)
T PRK13111 127 PPEEAEELRAAAKKHGLDLIFLVAPTTTD 155 (258)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 557788899999999966555 7766643
No 350
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=58.79 E-value=25 Score=22.95 Aligned_cols=35 Identities=14% Similarity=0.404 Sum_probs=28.2
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
..+...|...|++.+++|+... + +..+.++|+...
T Consensus 106 ~~l~~~L~~~g~~w~vfTaT~~--l-r~~~~rlgl~~~ 140 (179)
T PF12261_consen 106 AALAQLLAQQGFEWVVFTATRQ--L-RNLFRRLGLPPT 140 (179)
T ss_pred HHHHHHHHHCCCCEEEEeCCHH--H-HHHHHHcCCCce
Confidence 4455788999999999998874 3 888999998753
No 351
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=58.52 E-value=33 Score=24.27 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=35.5
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~ 101 (103)
+|.-|+.=+=+.|.++|++|+|+.--.... .+ -+.++|-+.+| -.|-+|+
T Consensus 30 HPsFG~AiIgR~Le~~GyrVgIiaQPdw~~-~~-df~~lG~PrLf--f~VsaGn 79 (302)
T PF08497_consen 30 HPSFGAAIIGRVLEAHGYRVGIIAQPDWRS-PE-DFKRLGRPRLF--FGVSAGN 79 (302)
T ss_pred CcchhHHHHHHHHHHcCCeEEEEeCCCCCC-hH-HHHHhCCCcEE--EEEcccc
Confidence 455666555688999999999999666555 23 47888887777 5555543
No 352
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=58.30 E-value=30 Score=22.68 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.++++.++++|+++.+.|-++... ...+..+|.+.
T Consensus 180 ~~~v~~~~~~G~~v~~wtvn~~~~--~~~~~~~Gvd~ 214 (220)
T cd08579 180 KEFIRQAHQNGKKVYVWTVNDPDD--MQRYLAMGVDG 214 (220)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHcCCCE
Confidence 578999999999999999777555 33455667643
No 353
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=58.09 E-value=32 Score=19.72 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=28.6
Q ss_pred EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCC-CeEEEEe
Q 034147 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVAS 71 (103)
Q Consensus 25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G-~~v~i~T 71 (103)
++|--||+.+-.. .......-.+...+.++.|++.| .++.+|.
T Consensus 39 v~~~g~gv~~~~~----~~~~~~~~~~~~~~~l~~l~~~g~v~i~~C~ 82 (122)
T PF02635_consen 39 VFFHGDGVKLALK----DQKPNPEGDPPLQELLKELKEAGGVKIYVCE 82 (122)
T ss_dssp EEE-GGGGGGGBT----TCHCGGCTSHCHHHHHHHHHHTTT-EEEEEH
T ss_pred EEEEchHHHHHHh----cccccccccccHHHHHHHHHhcCCcEEEEcH
Confidence 7778889988521 00112234577899999999997 9999885
No 354
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=58.01 E-value=42 Score=21.79 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=33.6
Q ss_pred hccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 16 GQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 16 ~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
|..-+...+-+.|-||+++. ++ ...++++.+++.|.-++.++.+..
T Consensus 14 Ne~I~~~~Vrli~~dG~~lg-------------v~-~~~eAl~~A~~~~lDLV~v~~~~~ 59 (177)
T PRK00028 14 NEQIRAREVRLIGDDGEQLG-------------IV-STREALELAEEAGLDLVEISPNAK 59 (177)
T ss_pred CcCcCCCEEEEECCCCcCCC-------------ce-eHHHHHHHHHHcCCCEEEECCCCC
Confidence 33334466778899999874 22 368899999999999998886543
No 355
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=58.00 E-value=24 Score=24.68 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
.|.+.+.++.++++|.+++.+|+++...+
T Consensus 139 T~~vi~al~~Ak~~Ga~tIaIT~~~~s~L 167 (291)
T TIGR00274 139 TPYVIAGLQYARSLGALTISIACNPKSAA 167 (291)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 36789999999999999999998886553
No 356
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=57.61 E-value=38 Score=22.91 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcccc
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~ 94 (103)
+.+..-+..|++.|++++++=|.. +.+ ...++++|+..-|.+
T Consensus 15 ~~~~~di~~l~~~g~~~VlVHGgg-~~i-~~~~~~~gi~~~~~~ 56 (248)
T cd04252 15 DELAASLSFLQHVGLYPIVVHGAG-PQL-NEELEAAGVEPEYVD 56 (248)
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCC-HHH-HHHHHHcCCCcEeeC
Confidence 456666778888899998888888 554 889999999876643
No 357
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=57.58 E-value=21 Score=25.09 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=23.5
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAP 76 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~ 76 (103)
.-+...+.++++.++|++++++|.....
T Consensus 238 ~~~~~~~~l~~a~~~gipVV~~sr~~~G 265 (313)
T PF00710_consen 238 VPPALLEALARAVERGIPVVVTSRCPSG 265 (313)
T ss_dssp SSHHHHHHHHHHHHTTSEEEEEESSSCS
T ss_pred CCHHHHHHHHHHHhcCceEEEecccccC
Confidence 5578899999999999999999865543
No 358
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.39 E-value=22 Score=19.78 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
....++++.|++.|+++...|.+.
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCH
Confidence 347889999999999998877665
No 359
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=57.35 E-value=25 Score=23.42 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
..+..++..+|+.|.+++.+|+++...+
T Consensus 100 ~el~~~~~~aK~~g~~liaiT~~~~SsL 127 (202)
T COG0794 100 KELLNLAPKAKRLGAKLIAITSNPDSSL 127 (202)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCChH
Confidence 4577788999999999999999997764
No 360
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=57.27 E-value=19 Score=24.85 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.+.++.++++|.+++.+|+.....+
T Consensus 191 ~e~i~~a~~ak~~ga~vIaiT~~~~spl 218 (281)
T COG1737 191 REIVEAAELAKERGAKVIAITDSADSPL 218 (281)
T ss_pred HHHHHHHHHHHHCCCcEEEEcCCCCCch
Confidence 6788999999999999999998865554
No 361
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=57.24 E-value=55 Score=23.34 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=34.4
Q ss_pred hHHHHHHhhccCC---CCceEEEeCCCCcccccccccccCCCcccChhH--HHHHHHHHHCCCeEEEEe
Q 034147 8 KNEALEIIGQFEN---LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHA--KGILEALKEKGIHVAVAS 71 (103)
Q Consensus 8 ~~~~~~~~~~~~~---~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~--~~~l~~l~~~G~~v~i~T 71 (103)
.+++++++....+ ..+++.+|+|=. +....+.- ....+|.. .+++++|+++|+++++..
T Consensus 23 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~--~~~~~f~~---d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 23 VDEVKEVVENMRAAGIPLDVQWNDIDYM--DRRRDFTL---DPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEECcccc--cCccceec---ccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 3444554443332 257777887622 11111111 12356777 999999999999988776
No 362
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=57.11 E-value=18 Score=26.08 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
|-+..+.++|+++|++++++|.+.
T Consensus 64 P~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 64 PVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred HHHHHHHHHHHhcCCeeEEEecCc
Confidence 678999999999999999999554
No 363
>PRK14557 pyrH uridylate kinase; Provisional
Probab=57.09 E-value=55 Score=22.31 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=21.0
Q ss_pred HHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 56 ILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 56 ~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
.++.+++.|+++.|++++....+ ...+.
T Consensus 201 A~~~a~~~gi~v~I~ng~~~~~l-~~~l~ 228 (247)
T PRK14557 201 ALLLARDYNLPAHVFNFDEPGVM-RRICL 228 (247)
T ss_pred HHHHHHHCCCcEEEEeCCCChHH-HHHHc
Confidence 44667788999999999887774 55554
No 364
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=57.07 E-value=14 Score=23.39 Aligned_cols=37 Identities=22% Similarity=-0.033 Sum_probs=24.2
Q ss_pred EEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe
Q 034147 26 VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 26 ~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T 71 (103)
+-|=||||+-. ...+.-|..-.++..++.+.++.++.
T Consensus 61 V~DsDgTlI~~---------~g~l~GGt~lT~~~a~~~~KP~l~i~ 97 (145)
T PF12694_consen 61 VRDSDGTLIFT---------RGELTGGTALTVEFARKHGKPCLHID 97 (145)
T ss_dssp HHTSSEEEEEE---------SSS--HHHHHHHHHHHHTT--EEEET
T ss_pred hhhcCeEEEEe---------cCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 44789999852 22355678888888888888888883
No 365
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=57.05 E-value=26 Score=24.60 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
.|.+.+.++.++++|.+++.+|+++...+
T Consensus 144 T~~vi~al~~Ak~~Ga~tI~IT~~~~s~L 172 (299)
T PRK05441 144 TPYVIGALEYARERGALTIGISCNPGSPL 172 (299)
T ss_pred CHHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 36789999999999999999998876654
No 366
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=56.95 E-value=32 Score=20.48 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~ 87 (103)
+.++++..++.|..+.++|+.+... ..+++.||
T Consensus 71 i~~l~~~a~~~g~~v~iis~~~e~G--~~L~~~~g 103 (113)
T PF03465_consen 71 IEELIELAEQSGAKVEIISSEHEEG--EQLLKGFG 103 (113)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTSHHH--HHHHHCTT
T ss_pred HHHHHHHHHHcCCEEEEEcCCCccH--HHHHhcCC
Confidence 6788999999999999999988433 44446654
No 367
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=56.37 E-value=49 Score=22.84 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=35.2
Q ss_pred HHhhHHHHHHhhccCCCCceEEEeC-CCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 5 EKVKNEALEIIGQFENLPRLVVFDL-DYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~fD~-DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
|+-|++.++++-+ .|+++++|= |.= + ......-+.+.++++++.|.-+.++|-..
T Consensus 149 EkKR~EilQ~~~l---ePkl~ILDE~DSG-L-----------DIdalk~V~~~i~~lr~~~~~~liITHy~ 204 (251)
T COG0396 149 EKKRNEILQLLLL---EPKLAILDEPDSG-L-----------DIDALKIVAEGINALREEGRGVLIITHYQ 204 (251)
T ss_pred hHHHHHHHHHHhc---CCCEEEecCCCcC-c-----------cHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 4455666665554 678888863 211 1 12234567788999999998888887544
No 368
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=56.26 E-value=18 Score=24.69 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=38.2
Q ss_pred hHHHHHHhhccCC---CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 8 KNEALEIIGQFEN---LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 8 ~~~~~~~~~~~~~---~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
..++.+++....+ ..+++.+|.|=.--... + .-.-....+|...+++++|+++|+++++......
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~~~--f-~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 23 QDKVLEVIDGMRENDIPLDGFVLDDDYTDGYGD--F-TFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred HHHHHHHHHHHHHcCCCccEEEECcccccCCce--e-eeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 3444554444433 24677777653311100 0 0011124678899999999999999998886653
No 369
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=56.21 E-value=63 Score=22.20 Aligned_cols=67 Identities=28% Similarity=0.278 Sum_probs=43.1
Q ss_pred HHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 11 ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 11 ~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
+..++..... +.++.=+.|+.+.. ......+.+-+..+++.|.+++++-|.. .. +...++.+++..
T Consensus 5 ~~~yi~~~~~--~~~ViKlGGs~i~~----------~~~~~~~~~~i~~l~~~g~~~ViVhG~g-~~-~~~~l~~~g~~~ 70 (279)
T cd04250 5 ALPYIQKFRG--KTVVIKYGGNAMKD----------EELKESFARDIVLLKYVGINPVVVHGGG-PE-INEMLKKLGIES 70 (279)
T ss_pred hhHHHHHHcC--CEEEEEEChHHhcC----------ccHHHHHHHHHHHHHHCCCCEEEEcCCc-HH-HHHHHHHCCCCC
Confidence 4445555443 45778899999852 1112335555556778888888888776 45 478888888764
Q ss_pred c
Q 034147 91 M 91 (103)
Q Consensus 91 ~ 91 (103)
.
T Consensus 71 ~ 71 (279)
T cd04250 71 E 71 (279)
T ss_pred E
Confidence 3
No 370
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=56.10 E-value=18 Score=26.95 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=34.1
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
+..+..++=+.|++.|+++.+..|.+... ...+++.+++...+
T Consensus 53 l~esL~~L~~~L~~~G~~L~v~~G~p~~v-l~~l~~~~~~~~V~ 95 (471)
T TIGR03556 53 LIGCLQELQQRYQQAGSQLLILQGDPVQL-IPQLAQQLGAKAVY 95 (471)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEECCHHHH-HHHHHHHcCCCEEE
Confidence 45666777788999999999999998776 48888888876544
No 371
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=55.89 E-value=34 Score=22.63 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=27.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
..++++.++++|+++.+.|-++...+ +. +-..|.+.
T Consensus 190 ~~~~v~~~~~~G~~v~~wTvn~~~~~-~~-l~~~GVdg 225 (233)
T cd08582 190 NPAFIKALRDAGLKLNVWTVDDAEDA-KR-LIELGVDS 225 (233)
T ss_pred CHHHHHHHHHCCCEEEEEeCCCHHHH-HH-HHHCCCCE
Confidence 46889999999999999998876663 44 44566643
No 372
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=55.61 E-value=32 Score=23.12 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
..++++.++++|+++.+.|=+.... ...+..+|.+..
T Consensus 198 ~~~~v~~~~~~g~~v~~WTvn~~~~--~~~l~~~GVdgI 234 (249)
T PRK09454 198 DEARVAALKAAGLRILVYTVNDPAR--ARELLRWGVDCI 234 (249)
T ss_pred CHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHHcCCCEE
Confidence 3679999999999999999777555 334566776443
No 373
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=55.34 E-value=24 Score=25.73 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=27.4
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.....+.+..|++.|+.++++||+.. ..=+.++|+..
T Consensus 30 l~~l~~~ia~L~~~G~eVilVSSGAi----aaG~~~Lg~~~ 66 (369)
T COG0263 30 LEELVRQVAALHKAGHEVVLVSSGAI----AAGRTRLGLPK 66 (369)
T ss_pred HHHHHHHHHHHHhCCCEEEEEccchh----hhChhhcCCCC
Confidence 35677788899999999999998873 22356666654
No 374
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=55.25 E-value=36 Score=19.02 Aligned_cols=74 Identities=16% Similarity=0.316 Sum_probs=44.4
Q ss_pred HHHhhHHHHHHhhccCCCCceEEEeCCCCc-ccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHH
Q 034147 4 LEKVKNEALEIIGQFENLPRLVVFDLDYTL-WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82 (103)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL-~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~ 82 (103)
++..++...+..... +..+.+++|+-++- +| ........++.+.++++|..+.++.-++ . ....
T Consensus 24 ~~~l~~~~~~~~~~~-~~~~~lilD~~~v~~iD-----------ss~~~~L~~~~~~~~~~~~~~~l~~~~~--~-~~~~ 88 (107)
T cd07042 24 AEYFKDRLLRLVDED-PPLKVVILDLSAVNFID-----------STAAEALEELVKDLRKRGVELYLAGLNP--Q-VREL 88 (107)
T ss_pred HHHHHHHHHHHhccC-CCceEEEEECCCCchhh-----------HHHHHHHHHHHHHHHHCCCEEEEecCCH--H-HHHH
Confidence 344445544444321 12466889998863 22 1122345667788889998888774333 5 3778
Q ss_pred HHHcCCCCcc
Q 034147 83 LHKLGIHSMF 92 (103)
Q Consensus 83 l~~~~l~~~~ 92 (103)
+...|+...+
T Consensus 89 l~~~g~~~~~ 98 (107)
T cd07042 89 LERAGLLDEI 98 (107)
T ss_pred HHHcCcHHHh
Confidence 8988887654
No 375
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=55.16 E-value=22 Score=23.70 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=21.0
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAP 76 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~ 76 (103)
..++..++++.++++|+++.+=||++..
T Consensus 84 ~~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 84 LQPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred CcccHHHHHHHHHhCCceEEecCCCCcc
Confidence 3457888888888888888888877643
No 376
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=55.06 E-value=28 Score=22.41 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEeC
Q 034147 51 PHAKGILEALKEKGIHVAVASR 72 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~ 72 (103)
+.+.+.++.++++|+.-+.++.
T Consensus 134 ~~v~~~~~~l~~~gv~avAV~~ 155 (176)
T PF05378_consen 134 DEVREALRELKDKGVEAVAVSL 155 (176)
T ss_pred HHHHHHHHHHHhCCCCEEEEEC
Confidence 4578899999999988777773
No 377
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=54.93 E-value=35 Score=21.67 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC-chhHHHHHHHHcCCCC
Q 034147 53 AKGILEALKEKGIHVAVASRSP-APDIAKTFLHKLGIHS 90 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~-~~~i~~~~l~~~~l~~ 90 (103)
..++++++++.|.++.+.|-+. ...+ +. +..+|.+.
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~~~~~~-~~-l~~~Gvd~ 174 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVNDNNEII-NK-FLNLGVDG 174 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCChHHHH-HH-HHHcCCCE
Confidence 4678999999999999999777 5652 44 55677643
No 378
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=54.70 E-value=40 Score=23.12 Aligned_cols=51 Identities=14% Similarity=0.006 Sum_probs=35.7
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
++-+++.+=|-.+..+. ..+............|+.+.+.|++++|+.|+..
T Consensus 5 ~~rillkLsGe~l~g~~---~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGn 55 (238)
T COG0528 5 YMRILLKLSGEALAGEQ---GFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGN 55 (238)
T ss_pred eEEEEEEeecceecCCC---CCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCH
Confidence 45688899998886421 1112333445667788888888999999998874
No 379
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=54.64 E-value=70 Score=22.33 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=28.9
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T 71 (103)
..+.++||+=|-+=-+ .-......++++|.+.|++++.+-
T Consensus 96 ~~~Y~lFDcPGQVELf-----------t~h~~l~~I~~~Lek~~~rl~~V~ 135 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELF-----------THHDSLNKIFRKLEKLDYRLVAVN 135 (290)
T ss_pred cCcEEEEeCCCcEEEE-----------eccchHHHHHHHHHHcCceEEEEE
Confidence 4677999999985321 112346789999999999987764
No 380
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=54.59 E-value=19 Score=25.44 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRS 73 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~ 73 (103)
|-+..+.+.|+++|++++|+|.+
T Consensus 45 P~v~~La~~l~~~G~~~~IlSRG 67 (311)
T TIGR00682 45 PVVVWLAELLKDRGLRVGVLSRG 67 (311)
T ss_pred HHHHHHHHHHHHCCCEEEEECCC
Confidence 66788889999999999999944
No 381
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=54.52 E-value=68 Score=23.44 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=28.5
Q ss_pred CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe
Q 034147 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T 71 (103)
.+++.+|.+-+- + . ..-.-....+|+..++++.|+++|+++++..
T Consensus 59 ~d~~~iD~~~~~-~-~---~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~ 103 (441)
T PF01055_consen 59 LDVIWIDDDYQD-G-Y---GDFTWDPERFPDPKQMIDELHDQGIKVVLWV 103 (441)
T ss_dssp EEEEEE-GGGSB-T-T---BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEE
T ss_pred ccceeccccccc-c-c---cccccccccccchHHHHHhHhhCCcEEEEEe
Confidence 577888887432 1 1 0111123467899999999999999988765
No 382
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=54.46 E-value=32 Score=24.88 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=31.7
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
-+....++|+.+++.|+++++++-.-.+.. +..++..++.
T Consensus 250 q~~F~e~~L~~ake~~I~~vl~~P~V~~~~-~~~~~~~~~~ 289 (345)
T PF07611_consen 250 QFFFLEKFLKLAKENGIPVVLWWPKVSPPY-EKLYKELKVY 289 (345)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEeccCHHH-HHHHHhhchh
Confidence 345678899999999999999998887664 7777776663
No 383
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=54.34 E-value=24 Score=21.29 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
+.+.++++.+++.|.+++.+|+..
T Consensus 76 ~~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 76 EKLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCC
Confidence 447789999999999999999875
No 384
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=54.14 E-value=95 Score=23.58 Aligned_cols=66 Identities=26% Similarity=0.306 Sum_probs=43.3
Q ss_pred hhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH--CCCeEEEEeCCCchhHHHHHHH
Q 034147 7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE--KGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~--~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
+=.++++++... .+++++.|+- .+...| .++++.+++ ....++|+||-....-|+ ..=
T Consensus 36 NG~eAleli~e~--~pDiviTDI~----------------MP~mdG-LdLI~~ike~~p~~~~IILSGy~eFeYak-~Am 95 (475)
T COG4753 36 NGKEALELIQET--QPDIVITDIN----------------MPGMDG-LDLIKAIKEQSPDTEFIILSGYDEFEYAK-KAM 95 (475)
T ss_pred cHHHHHHHHHhc--CCCEEEEecC----------------CCCCcH-HHHHHHHHHhCCCceEEEEeccchhHHHH-HHH
Confidence 345677777764 4677887761 223344 678888887 558899999988655333 344
Q ss_pred HcCCCCcc
Q 034147 85 KLGIHSMF 92 (103)
Q Consensus 85 ~~~l~~~~ 92 (103)
++|..+|.
T Consensus 96 ~lGV~dYL 103 (475)
T COG4753 96 KLGVKDYL 103 (475)
T ss_pred hcCchhhe
Confidence 56776654
No 385
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=53.86 E-value=22 Score=23.79 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=22.4
Q ss_pred cChh-HHHHHHHHHHCCCeEEEEeCCCc
Q 034147 49 LYPH-AKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 49 ~~~g-~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
+.+. ..++++.+++.|+++++.||+..
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4555 46899999999999999998873
No 386
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=53.66 E-value=20 Score=24.33 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=21.2
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCC
Q 034147 50 YPHAKGILEALKEKGIHVAVASRS 73 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~ 73 (103)
.+.+.++++.++++|.+++.+|+.
T Consensus 188 t~~~~~~~~~ak~~g~~vI~IT~~ 211 (284)
T PRK11302 188 TKSLVELAQLARENGATVIAITSA 211 (284)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCC
Confidence 367889999999999999999973
No 387
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=53.64 E-value=18 Score=23.52 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEe
Q 034147 51 PHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T 71 (103)
+.+.++.++|+++|++++.+|
T Consensus 95 ~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 95 EEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEE
Confidence 467889999999999999999
No 388
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=53.58 E-value=29 Score=24.06 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
.-+.|-+..|+..|..+.++|++.... -.+.++
T Consensus 35 a~IVEqV~~L~~~G~evilVSSGaVA~-G~qrLr 67 (285)
T KOG1154|consen 35 ASIVEQVSELQRMGREVILVSSGAVAF-GRQRLR 67 (285)
T ss_pred HHHHHHHHHHHhcCceEEEEecchhhh-hHHHhh
Confidence 456788889999999999999988554 344443
No 389
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=53.49 E-value=73 Score=22.06 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=46.9
Q ss_pred HHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 10 ~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++..++.+++ +.++.=+.|-.+.. . -...+.+-+..|++.|++++|+=|+. +. +...+++++++
T Consensus 8 ~~~~yi~~~~~--~~~VIKlGG~ai~~----------~-~l~~~~~~ia~l~~~g~~~ViVHGgg-p~-i~~~~~~~gi~ 72 (280)
T cd04237 8 EAAPYINAHRG--KTFVIAFGGEAVAH----------P-NFDNIVHDIALLHSLGIRLVLVHGAR-PQ-IDQRLAERGLE 72 (280)
T ss_pred HHhHHHHHhCC--CEEEEEEChHHhcC----------c-hHHHHHHHHHHHHHCCCcEEEEeCCC-HH-HHHHHHHcCCC
Confidence 34455555443 44666788877741 1 11356677778888899999999887 55 48889999988
Q ss_pred Cccc
Q 034147 90 SMFV 93 (103)
Q Consensus 90 ~~~~ 93 (103)
..|.
T Consensus 73 ~~~~ 76 (280)
T cd04237 73 PRYH 76 (280)
T ss_pred cccc
Confidence 6553
No 390
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=53.24 E-value=20 Score=22.95 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCC
Q 034147 52 HAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 52 g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
=+.+++++|+++|++++++=...
T Consensus 18 Lie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 18 LIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred HHHHHHHHHHhCCcEEEEEEecC
Confidence 36788999999999999886444
No 391
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=53.05 E-value=28 Score=23.91 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=28.2
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
....++.+...++..+..|+++.|-|+++...
T Consensus 121 k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~A 152 (254)
T KOG2630|consen 121 KAHVYADVLPAIERWSGEGVRVYIYSSGSVAA 152 (254)
T ss_pred cccccchhHHHHHHHhhcCceEEEEcCCcHHH
Confidence 34788999999999999999999999998654
No 392
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=52.92 E-value=40 Score=25.56 Aligned_cols=61 Identities=13% Similarity=-0.088 Sum_probs=44.4
Q ss_pred EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCe-EEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIH-VAVASRSPAPDIAKTFLHKLGIHSMFV 93 (103)
Q Consensus 25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~-v~i~T~~~~~~i~~~~l~~~~l~~~~~ 93 (103)
.+-+.||.|+++ +=..+-.+|...+.++.+++++| ++||=|-..+.+ +..-.-+|+.+.++
T Consensus 360 ~l~~adGilvPG-------GFG~RGveG~i~Aak~ARen~iP~LGiCLGmQ~AvI-EfaRnvLg~~dAnS 421 (585)
T KOG2387|consen 360 KLKSADGILVPG-------GFGDRGVEGKILAAKWARENKIPFLGICLGMQLAVI-EFARNVLGLKDANS 421 (585)
T ss_pred HhccCCeEEeCC-------cccccchhHHHHHHHHHHhcCCCeEeeehhhhHHHH-HHHHHhhCCCCCCc
Confidence 355789999973 22345568999999999999998 578878776663 66666688877553
No 393
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=52.83 E-value=27 Score=22.71 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l 83 (103)
+.+.+.++..+++|+.++..||++-..+ ..++
T Consensus 123 ~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~-~~~~ 154 (176)
T COG0279 123 KNVLKAIEAAKEKGMTVIALTGKDGGKL-AGLL 154 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCccc-cccc
Confidence 5688899999999999999999987664 5444
No 394
>PRK11778 putative inner membrane peptidase; Provisional
Probab=52.78 E-value=84 Score=22.59 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=13.0
Q ss_pred CCceEEEeCCCCcccc
Q 034147 21 LPRLVVFDLDYTLWPF 36 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~ 36 (103)
.+++.+.|++|++...
T Consensus 89 ~~~v~VI~~~G~I~~~ 104 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS 104 (330)
T ss_pred CCeEEEEEEEEEECCC
Confidence 4688999999998753
No 395
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=52.47 E-value=40 Score=18.72 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=28.1
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
...+-++|-||+.+. .+ ...++++..++.|.-++.++.+..
T Consensus 12 ~~~VrlI~~~g~~lG-------------v~-~~~eAl~~A~~~~lDLV~v~~~~~ 52 (76)
T PF05198_consen 12 APEVRLIDEDGEQLG-------------VM-SLREALRLAKEKGLDLVEVSPNAD 52 (76)
T ss_dssp -SEEEEE-TTS-EEE-------------EE-EHHHHHHHHHHTT-EEEEEETTSS
T ss_pred CCEEEEECCCCcEec-------------eE-EHHHHHHHHHHcCCcEEEEcCCCC
Confidence 455667799999873 12 368899999999999999995543
No 396
>PRK14556 pyrH uridylate kinase; Provisional
Probab=52.22 E-value=47 Score=22.83 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 55 GILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 55 ~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
..++.+++.|+++.|++++....+ ...+.
T Consensus 210 ~A~~~a~~~gIpi~I~ng~~~~~L-~~~l~ 238 (249)
T PRK14556 210 GAFTQCRDFGIPIYVFDLTQPNAL-VDAVL 238 (249)
T ss_pred HHHHHHHHCCCcEEEECCCCchHH-HHHHc
Confidence 467778899999999998877774 55554
No 397
>PRK06740 histidinol-phosphatase; Validated
Probab=51.87 E-value=38 Score=24.11 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=26.9
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCch--------hHHHHHHHHcCCCC
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAP--------DIAKTFLHKLGIHS 90 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~--------~i~~~~l~~~~l~~ 90 (103)
.++| ...+++.+++.|+++++-|-...+ . +...++.+|+..
T Consensus 269 e~yP-~~~il~~~~e~Gv~~tlgSDAH~p~~VG~~~~~-a~~~l~~~G~~~ 317 (331)
T PRK06740 269 EMCP-SPLFLQVLAKHEVPITLSSDAHYPNDLGKYVEE-NVKTLRNHGVTS 317 (331)
T ss_pred CCCc-CHHHHHHHHHCCCeEEEeeCCCCHHHHHhHHHH-HHHHHHHcCCcE
Confidence 3555 357889999999998888744422 2 345556677653
No 398
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=51.75 E-value=21 Score=25.18 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.9
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEe
Q 034147 48 YLYPHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T 71 (103)
..+|...+++++|+++|+++++.-
T Consensus 68 ~~FPdp~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 68 ERYPGLDELIEELKARGIRVLTYI 91 (317)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEe
Confidence 467889999999999999988765
No 399
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=51.28 E-value=29 Score=20.80 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=18.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCch
Q 034147 53 AKGILEALKEKGIHVAVASRSPAP 76 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~ 76 (103)
+.++++.|+++|+.+.+++.+...
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCc
Confidence 567889999999999999866543
No 400
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.26 E-value=27 Score=25.76 Aligned_cols=44 Identities=7% Similarity=0.057 Sum_probs=34.3
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~ 93 (103)
+..+..++=+.|++.|+++.+..+.+...+ ..+++.+++...+.
T Consensus 76 l~esL~~L~~~L~~~g~~L~v~~g~~~~~l-~~l~~~~~i~~V~~ 119 (454)
T TIGR00591 76 MLGGLDEVANECERLIIPFHLLDGPPKELL-PYFVDLHAAAAVVT 119 (454)
T ss_pred HHHHHHHHHHHHHHcCCceEEeecChHHHH-HHHHHHcCCCEEEE
Confidence 445666677889999999999999987774 88888888765443
No 401
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=51.26 E-value=62 Score=20.59 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=42.5
Q ss_pred cHHHhhHHHHHHhhccCCC--Cc-eEEEeCCCCccccccc--c-----cccCCCcccChhHHHHHHHHHHCCCeEEEEeC
Q 034147 3 DLEKVKNEALEIIGQFENL--PR-LVVFDLDYTLWPFYCE--C-----CYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~-~~~fD~DGTL~~~~~~--~-----~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~ 72 (103)
.++.-+...++.+..+... .+ +++||--++--..... . -..........-+.+++..+...+..+.|+||
T Consensus 23 ~l~~aR~~Li~~L~~y~~~~~~~v~VVFDa~~~~~~~~~~~~~~gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTS 102 (166)
T PF05991_consen 23 DLEAARERLIEMLSEYAQFSGYEVIVVFDAYKVPGGSEEREEYGGIEVVFTKEGETADDYIERLVRELKNRPRQVTVVTS 102 (166)
T ss_pred CHHHHHHHHHHHHHHHhcccCCEEEEEEeCCcCCCCCceeeeeCceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEEeC
Confidence 4566677777776655543 33 3678854332221100 0 01111122334456666677766789999998
Q ss_pred CCchhHHHHHHHHcC
Q 034147 73 SPAPDIAKTFLHKLG 87 (103)
Q Consensus 73 ~~~~~i~~~~l~~~~ 87 (103)
-.. + +......|
T Consensus 103 D~~--i-q~~~~~~G 114 (166)
T PF05991_consen 103 DRE--I-QRAARGRG 114 (166)
T ss_pred CHH--H-HHHHhhCC
Confidence 763 2 33444444
No 402
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=51.25 E-value=68 Score=21.30 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=26.6
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.++++.+++.|+++.+.|=+.... ...+.++|.+.
T Consensus 195 ~~~v~~~~~~Gl~v~vwTVn~~~~--~~~l~~~GVdg 229 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTINDLKD--AQEYKKLGVYG 229 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHH--HHHHHHcCCCE
Confidence 578999999999999999777555 34466667643
No 403
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=51.03 E-value=57 Score=21.97 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.-+.+.+++++++|+++.+.|-...... -..+...|.+
T Consensus 185 ~~l~~~v~~a~~~Gl~vr~Wtv~~~~~~-~~~l~~~GVd 222 (228)
T cd08577 185 EKLKSIIDKAHARGKKVRFWGTPDRPNV-WKTLMELGVD 222 (228)
T ss_pred HHHHHHHHHHHHCCCEEEEEccCChHHH-HHHHHHhCCC
Confidence 3466788899999999999996543442 4455666764
No 404
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=51.00 E-value=22 Score=25.37 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
|-+..+++.|+++|++++|+|.+.
T Consensus 66 P~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 66 PVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCC
Confidence 667888899999999999999443
No 405
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=50.90 E-value=15 Score=29.91 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=46.8
Q ss_pred CCceEEEeCCCCcccccccc--cccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 21 LPRLVVFDLDYTLWPFYCEC--CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~--~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
-++-+.||+|---++.+.-. .--.....|...+.+.+.++++.|++++.+|+..... +....+..|+
T Consensus 561 ~p~~~~f~~d~~n~p~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiT-AkAiA~~vgI 629 (1019)
T KOG0203|consen 561 FPRGFQFDTDDVNFPTDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKSVGI 629 (1019)
T ss_pred CCCceEeecCCCCCcchhccccchhhccCCCcccCchhhhhhhhhCceEEEEecCccch-hhhhhhheee
Confidence 35668888877655532110 0112233566778899999999999999999998776 7777777774
No 406
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=50.80 E-value=71 Score=21.16 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=41.0
Q ss_pred HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
+..++.+......++.+++==| +++.+. ...........+.+.++.|++.|.++.++.|+.-.......++..|+
T Consensus 18 ~~~l~~l~~~~~~~d~lii~GD--i~d~~~---~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~~~~~~~~~~gi 92 (231)
T TIGR01854 18 ALFLDFLREEARKADALYILGD--LFEAWI---GDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFLIGKRFAREAGM 92 (231)
T ss_pred HHHHHHHHhhhccCCEEEEcCc--eecccc---CCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchhhhHHHHHHCCC
Confidence 4455555544335666666222 233211 00011112245677888998889999999998865432234455564
No 407
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=50.78 E-value=23 Score=25.45 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
|-+..+.+.|+++|++++|+|.+.
T Consensus 73 P~v~~La~~l~~~G~~~~IlSRGY 96 (338)
T PRK01906 73 PTVIALVDALRAAGFTPGVVSRGY 96 (338)
T ss_pred HHHHHHHHHHHHcCCceEEEecCC
Confidence 667788899999999999999443
No 408
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=50.76 E-value=41 Score=22.76 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=27.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.++++.+++.|+++.+.|=+....+ . .+..+|.+.
T Consensus 213 ~~~v~~~~~~g~~v~~WTVn~~~~~-~-~l~~~GVdg 247 (252)
T cd08574 213 AQEIREYSKANISVNLYVVNEPWLY-S-LLWCSGVQS 247 (252)
T ss_pred HHHHHHHHHCCCEEEEEccCCHHHH-H-HHHHcCCCE
Confidence 5789999999999999998876652 4 455677643
No 409
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=50.58 E-value=67 Score=20.78 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=42.2
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEE-EeCCCchhHHHHHHHHcCCCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV-ASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i-~T~~~~~~i~~~~l~~~~l~~ 90 (103)
-.|+|+|=+=|...+.= ...-.||..+-..+|+++|+..++ +|-++ +++...+-+.++-..
T Consensus 43 GKKvIifGvPgAFtPtC--------s~~HvPGyi~~a~elksKGVd~iicvSVnD-pFv~~aW~k~~g~~~ 104 (171)
T KOG0541|consen 43 GKKVILFGVPGAFTPTC--------SSSHVPGYIEKADELKSKGVDEIICVSVND-PFVMKAWAKSLGAND 104 (171)
T ss_pred CceEEEEcCCCccCCcc--------ccccCchHHHHHHHHHhcCCcEEEEEecCc-HHHHHHHHhhcCccc
Confidence 46889998888877621 122348999999999999977555 45555 443577777776543
No 410
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=50.50 E-value=48 Score=20.70 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++++.++++|+++.+.|-+....+ +. +...|.+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~~~~~-~~-~~~~GVd 183 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVNDPEDA-RR-LLALGVD 183 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCCHHHH-HH-HHHCCCC
Confidence 6789999999999999998775552 44 4556653
No 411
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=50.49 E-value=46 Score=24.19 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=27.8
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
+|+=|+||+..+.- .++ ..+..+ .+.++..++..-.++|.|++-+
T Consensus 4 LivQDLDGVCm~LV----kDP-ltR~ld--~~Yv~A~~~l~~~F~VLTnGEH 48 (381)
T PF09506_consen 4 LIVQDLDGVCMPLV----KDP-LTRRLD--PDYVRAARQLEGHFYVLTNGEH 48 (381)
T ss_pred eEEecCCccchhhc----cCc-cccccC--HHHHHHHHHhcCcEEEEeCCcc
Confidence 45669999998732 111 111222 4566666666678999997663
No 412
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=50.39 E-value=1.5 Score=21.80 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=17.0
Q ss_pred HHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 55 ~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
++.++|++.|...+-+|...+... ...+.++
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY-~kkL~kl 40 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVY-EKKLAKL 40 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHH-HHHCHHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHH-HHHHHHH
Confidence 456778899999999998887663 5555443
No 413
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=50.30 E-value=57 Score=21.48 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=21.5
Q ss_pred cChh-HHHHHHHHHHCCCeEEEEeCCC
Q 034147 49 LYPH-AKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 49 ~~~g-~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
+.+. ..++++.+++.|+++.+.||+.
T Consensus 78 l~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 78 LQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 4455 4689999999999999999884
No 414
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=50.13 E-value=44 Score=22.67 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCCeEEEEe----CCCchhHHHHHHHHcCCCC
Q 034147 53 AKGILEALKEKGIHVAVAS----RSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T----~~~~~~i~~~~l~~~~l~~ 90 (103)
..++++.++++|+++.+.| .++.+. ...+..+|.+.
T Consensus 212 ~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~--~~~l~~~Gvdg 251 (265)
T cd08564 212 TEEFVKKAHENGLKVMTYFDEPVNDNEED--YKVYLELGVDC 251 (265)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCHHH--HHHHHHcCCCE
Confidence 4578999999999999999 444344 33455677644
No 415
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=50.03 E-value=25 Score=24.13 Aligned_cols=29 Identities=38% Similarity=0.589 Sum_probs=23.4
Q ss_pred cccChhH-HHHHHHHHHCCCeEEEEeCCCc
Q 034147 47 PYLYPHA-KGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 47 ~~~~~g~-~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
+.+.+.. .++++++++.|+.+.+.||+..
T Consensus 136 Pll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 136 PLLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred hhchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 3355664 6899999999999999998863
No 416
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=49.74 E-value=61 Score=22.22 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=26.6
Q ss_pred HHHHHHHHHCCCeEEEEeC--CCchhHHHHHHHHcCCCC
Q 034147 54 KGILEALKEKGIHVAVASR--SPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~--~~~~~i~~~~l~~~~l~~ 90 (103)
.++++.++++|+++.+.|- +.... ...+..+|.+.
T Consensus 248 ~~~v~~~~~~Gl~v~~wTv~~n~~~~--~~~l~~~GVdg 284 (290)
T cd08607 248 PSQIELAKSLGLVVFCWGDDLNDPEN--RKKLKELGVDG 284 (290)
T ss_pred hHHHHHHHHcCCEEEEECCCCCCHHH--HHHHHHcCCCE
Confidence 5788999999999999996 66554 34566777643
No 417
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.71 E-value=24 Score=25.47 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=28.5
Q ss_pred HHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147 56 ILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 56 ~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~ 92 (103)
.++..++-|.++.++|+++... ++.++++|-+.+.
T Consensus 197 aVq~AKAMG~rV~vis~~~~kk--eea~~~LGAd~fv 231 (360)
T KOG0023|consen 197 AVQYAKAMGMRVTVISTSSKKK--EEAIKSLGADVFV 231 (360)
T ss_pred HHHHHHHhCcEEEEEeCCchhH--HHHHHhcCcceeE
Confidence 5788899999999999988554 6778999976654
No 418
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=49.70 E-value=42 Score=23.36 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
..++++.++++|+++.+.|=+..+.+ +. +..+|.+..
T Consensus 250 ~~~~v~~~~~~G~~v~vWTVNd~~~~-~~-l~~~GVdgI 286 (300)
T cd08612 250 RPSLFRHLQKRGIQVYGWVLNDEEEF-ER-AFELGADGV 286 (300)
T ss_pred CHHHHHHHHHCCCEEEEeecCCHHHH-HH-HHhcCCCEE
Confidence 46789999999999999997776663 54 455776443
No 419
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=49.64 E-value=68 Score=20.60 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
.+.+-+.|-||+... +. ...++++..++.|.-++.++.+.
T Consensus 7 ~~~Vrli~~dG~~lg-------------v~-~~~eAl~~A~~~~lDLVev~~~a 46 (165)
T TIGR00168 7 FNEVRLIDENGEQLG-------------IV-SREEALEIAEEAGLDLVLISPNA 46 (165)
T ss_pred CCEEEEECCCCcCCC-------------cc-cHHHHHHHHHHcCCcEEEECCCC
Confidence 456667799999774 12 36889999999999999998654
No 420
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=49.42 E-value=49 Score=21.81 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=26.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.++++.+++.|+++.+.|=+.... .+. +...|.+.
T Consensus 190 ~~~i~~~~~~g~~v~~Wtvn~~~~-~~~-~~~~GVdg 224 (230)
T cd08563 190 EEVVEELKKRGIPVRLWTVNEEED-MKR-LKDLGVDG 224 (230)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHH-HHH-HHHCCCCE
Confidence 578999999999999999776555 244 45567643
No 421
>PRK10949 protease 4; Provisional
Probab=49.38 E-value=55 Score=25.58 Aligned_cols=17 Identities=6% Similarity=-0.244 Sum_probs=13.5
Q ss_pred CCceEEEeCCCCccccc
Q 034147 21 LPRLVVFDLDYTLWPFY 37 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~ 37 (103)
..++.+..++||+.+..
T Consensus 325 ~~~Iavi~~~G~I~~g~ 341 (618)
T PRK10949 325 GGSIAVIFANGAIMDGE 341 (618)
T ss_pred CCeEEEEEEEEEEcCCC
Confidence 35778889999998754
No 422
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=49.31 E-value=49 Score=21.64 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.++++.++++|+++.+.|=++...+ + .+..+|.+
T Consensus 189 ~~~v~~~~~~g~~v~~wTvn~~~~~-~-~~~~~gVd 222 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTVNDPARA-A-ELLEWGVD 222 (229)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHH-H-HHHHCCCC
Confidence 5799999999999999998775552 4 34566653
No 423
>PRK10200 putative racemase; Provisional
Probab=49.27 E-value=46 Score=22.30 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=30.6
Q ss_pred CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
...+.+-..+.++.|.+.|..++++..++.....+..-+.+++
T Consensus 57 ~~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~i 99 (230)
T PRK10200 57 WDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSL 99 (230)
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCC
Confidence 3457788999999999999998888766644434444444544
No 424
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=48.84 E-value=42 Score=24.48 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=28.1
Q ss_pred ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
-+|+=|+||+....- .++ ..+..+ .+.++..++..-.++|.|++-+
T Consensus 9 lLiVQDLDGVCmpLV----kDP-ltR~ld--~~Yv~A~~~l~~~F~VLTnGEH 54 (389)
T TIGR02399 9 LLIVQDLDGVCIPLV----KDP-LTRKLD--SKYVFAVKNLEKEFYVLTNGEH 54 (389)
T ss_pred eEEEecCCccchhhc----cCc-ccccCC--HHHHHHHHHhcCcEEEEeCCcc
Confidence 345669999998732 111 111121 4566666666678999997764
No 425
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=48.53 E-value=21 Score=20.77 Aligned_cols=25 Identities=4% Similarity=0.064 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
.+..++.++++..+.+++++||+..
T Consensus 68 ~~~~Q~~~Y~~~~~~~~~i~tNG~~ 92 (112)
T PF13588_consen 68 KAVEQLKSYARALGAPYGILTNGKE 92 (112)
T ss_dssp -SHHHHHHHHHHHT-SEEEEE-SS-
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCe
Confidence 4788899999888999999998874
No 426
>PF15649 Tox-REase-7: Restriction endonuclease fold toxin 7
Probab=48.46 E-value=50 Score=18.93 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=29.1
Q ss_pred eCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 28 DLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 28 D~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
+..|+|++.. ........+-....+++.++.|+++.++.+..
T Consensus 39 ~~~~~l~EVK-----NV~~~s~t~Qlr~~~~~A~~~G~~~~Lvv~~~ 80 (87)
T PF15649_consen 39 KNNGQLVEVK-----NVKYQSLTKQLRDYVKYAKENGYRFNLVVNHR 80 (87)
T ss_pred cCCCcEEEEe-----chhhccchHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 3456776531 12223455778888999999999999998755
No 427
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.40 E-value=25 Score=24.71 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=35.7
Q ss_pred hHHHHHHhhccCC---CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe
Q 034147 8 KNEALEIIGQFEN---LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 8 ~~~~~~~~~~~~~---~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T 71 (103)
.+++++++....+ ..+++.+|.+=+-..... +..-.-....+|...+++++|+++|+++++..
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~-~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i 93 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGK-RYVFNWNKDRFPDPAAFVAKFHERGIRLAPNI 93 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCc-eeeeecCcccCCCHHHHHHHHHHCCCEEEEEe
Confidence 3455555544433 246777785432110000 00001123577899999999999999998754
No 428
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=48.00 E-value=37 Score=20.10 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=24.9
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC--CCeEEEEeCCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK--GIHVAVASRSP 74 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~--G~~v~i~T~~~ 74 (103)
.+.++++|.|+... ....++++.++++ ++|+.+++.+.
T Consensus 38 ~i~avvi~~d~~~~----------------~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 38 DIAAVVISWDGEEE----------------DEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp TEEEEEEECHHHHH----------------HHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred CeeEEEEEcccccc----------------hhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 46677888772222 3456777777765 49999999866
No 429
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=47.96 E-value=54 Score=18.99 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=25.3
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
.+.-|..+.++.+++...+++++++...+.. ...++
T Consensus 16 kl~~G~~~v~kai~~gkaklViiA~D~~~~~-~~~i~ 51 (99)
T PRK01018 16 KVILGSKRTIKAIKLGKAKLVIVASNCPKDI-KEDIE 51 (99)
T ss_pred CEEEcHHHHHHHHHcCCceEEEEeCCCCHHH-HHHHH
Confidence 3557889999999987778777776665553 44443
No 430
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=47.79 E-value=52 Score=18.71 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=35.6
Q ss_pred CCCCceEEEeCCC-----CcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCC
Q 034147 19 ENLPRLVVFDLDY-----TLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS 73 (103)
Q Consensus 19 ~~~~~~~~fD~DG-----TL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~ 73 (103)
..-++++++.-.| .+++ -.....++.+.=...++.|++.|+.+.||.+.
T Consensus 46 ~G~PDl~~~~~~~~~~~~~~iE------vK~p~~~ls~~Q~~~~~~l~~~G~~v~V~~~~ 99 (100)
T PF08774_consen 46 SGFPDLILWRPRGKRDIFLFIE------VKGPGDRLSPNQKEWIDKLREAGFRVAVCRSV 99 (100)
T ss_pred CCCCcEEEEecCCCccEEEEEE------EcCCCCCcCHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4458888886544 2333 23444677888888999999999999998753
No 431
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=47.65 E-value=26 Score=24.86 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
+...+.|+++.++|++++++|......
T Consensus 249 ~~~~~~l~~a~~~gi~VV~~Sq~~~G~ 275 (323)
T cd00411 249 TDLIDELEEAAERGVVVVNSTQCEEGA 275 (323)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCCc
Confidence 478899999999999999988655433
No 432
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=47.44 E-value=33 Score=24.08 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
|.+.+.++.++++|.+++.+|+++...+
T Consensus 141 ~~vi~al~~Ak~~Ga~~IaIT~~~~s~L 168 (296)
T PRK12570 141 PYVIGALEYAKQIGATTIALSCNPDSPI 168 (296)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 6789999999999999999998886654
No 433
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=47.43 E-value=60 Score=19.30 Aligned_cols=38 Identities=11% Similarity=0.133 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
+...++.+.+++.|+.++.++...... .....+..++.
T Consensus 44 ~~l~~~~~~~~~~~v~vv~V~~~~~~~-~~~~~~~~~~~ 81 (149)
T cd02970 44 RALSKLLPELDALGVELVAVGPESPEK-LEAFDKGKFLP 81 (149)
T ss_pred HHHHHHHHHHHhcCeEEEEEeCCCHHH-HHHHHHhcCCC
Confidence 455566677777899988888776665 35566666653
No 434
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=47.37 E-value=13 Score=27.74 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=12.0
Q ss_pred CCCceEEEeCCCCcccc
Q 034147 20 NLPRLVVFDLDYTLWPF 36 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~ 36 (103)
++++++-||+|-||...
T Consensus 10 ~~i~~iGFDmDyTLa~Y 26 (448)
T PF05761_consen 10 KDIDVIGFDMDYTLARY 26 (448)
T ss_dssp CC--EEEE-TBTTTBEE
T ss_pred ccCCEEEECcccchhhc
Confidence 56899999999999963
No 435
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=47.34 E-value=57 Score=21.57 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=29.9
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
.+.+++||=--.-.| ..+...++++++.|++-|+.-+|+|---
T Consensus 159 kpqvllfdeptaald-----------peitaqvv~iikel~~tgitqvivthev 201 (242)
T COG4161 159 EPQVLLFDEPTAALD-----------PEITAQIVSIIKELAETGITQVIVTHEV 201 (242)
T ss_pred CCcEEeecCcccccC-----------HHHHHHHHHHHHHHHhcCceEEEEEeeh
Confidence 356677764322222 2344567889999999999999999655
No 436
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=47.32 E-value=83 Score=20.95 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
..+.++++.+++.|+++.++.|+.-..+.....+..|+
T Consensus 57 ~~~~~~l~~l~~~g~~v~~v~GNHD~~~~~~~~~~~g~ 94 (241)
T PRK05340 57 REIAAALKALSDSGVPCYFMHGNRDFLLGKRFAKAAGM 94 (241)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCchhhhHHHHHhCCC
Confidence 45677889999999999999988865433444556664
No 437
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=47.26 E-value=59 Score=19.17 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
.+...++.+++++.|..++.+|..+... +..+.+.+
T Consensus 42 ~~~l~~~~~~~~~~~~~~i~is~d~~~~-~~~~~~~~ 77 (140)
T cd02971 42 LCAFRDLAEEFAKGGAEVLGVSVDSPFS-HKAWAEKE 77 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhcc
Confidence 4666777778877889998888877666 47777766
No 438
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=47.22 E-value=47 Score=25.10 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=29.2
Q ss_pred EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
++.=-||++.+. .+.. ..+.=.++++.|++-|.|++|+=|+..
T Consensus 149 iVVTTDGSi~di-----pRe~---Y~eAEervI~ELk~igKPFvillNs~~ 191 (492)
T PF09547_consen 149 IVVTTDGSITDI-----PREN---YVEAEERVIEELKEIGKPFVILLNSTK 191 (492)
T ss_pred EEEecCCCccCC-----ChHH---HHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 577889999873 1111 223335589999999999887765553
No 439
>PRK13695 putative NTPase; Provisional
Probab=47.16 E-value=70 Score=20.01 Aligned_cols=54 Identities=7% Similarity=0.000 Sum_probs=32.8
Q ss_pred hHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
++............++++++|==|.+-. .-++..+.++.+.+.|.+++++++..
T Consensus 83 e~~~~~l~~~~l~~~~~lllDE~~~~e~-------------~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 83 ERIGIPALERALEEADVIIIDEIGKMEL-------------KSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred HHHHHHHHHhccCCCCEEEEECCCcchh-------------hhHHHHHHHHHHHhCCCeEEEEECch
Confidence 3334444444445678888773232211 12556788888778888888888764
No 440
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=47.01 E-value=34 Score=26.21 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.++++.++++|++++.+|+.....+
T Consensus 350 ~e~i~a~~~ak~~ga~~IaIT~~~~S~L 377 (604)
T PRK00331 350 ADTLAALRLAKELGAKTLAICNVPGSTI 377 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChh
Confidence 6789999999999999999998876664
No 441
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=46.94 E-value=51 Score=22.07 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.++++.++++|+++.+.|-+....+ + .+...|.+.
T Consensus 221 ~~~i~~~~~~G~~v~vwtvn~~~~~-~-~~~~~Gvdg 255 (263)
T cd08567 221 KELVDEAHALGLKVVPWTVNDPEDM-A-RLIDLGVDG 255 (263)
T ss_pred HHHHHHHHHCCCEEEEecCCCHHHH-H-HHHHcCCCE
Confidence 5789999999999999997775552 4 455667643
No 442
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=46.88 E-value=49 Score=18.21 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHCC-CeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 52 HAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 52 g~~~~l~~l~~~G-~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
.-.++.++.+.+. -++.++|..-... +....+++|++
T Consensus 33 rk~~lYek~~grk~~r~ivVtp~id~~-a~~~A~~LGIe 70 (70)
T PF07788_consen 33 RKAELYEKVHGRKVDRLIVVTPYIDDR-AKEMAEELGIE 70 (70)
T ss_pred HHHHHHHHHHCCCcceEEEEEeecCHH-HHHHHHHhCCC
Confidence 3344555555544 5788899877777 78889999874
No 443
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=46.88 E-value=40 Score=20.08 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=8.4
Q ss_pred eEEEeCCCCccc
Q 034147 24 LVVFDLDYTLWP 35 (103)
Q Consensus 24 ~~~fD~DGTL~~ 35 (103)
.+-.|-||+++-
T Consensus 51 ~i~I~~~g~~~~ 62 (122)
T TIGR02803 51 YVSVKADLSLFV 62 (122)
T ss_pred EEEEeCCCCEEE
Confidence 455688888773
No 444
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=46.61 E-value=55 Score=22.45 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCC-eEEEEeCCCchhHHHHHHHHcCCC
Q 034147 53 AKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 53 ~~~~l~~l~~~G~-~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
+..-++.|++.|+ .++++|++....+.+..+.++++.
T Consensus 34 i~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~~ 71 (239)
T COG1213 34 IYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPFN 71 (239)
T ss_pred HHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCCcc
Confidence 4567888999996 578888555555578899988863
No 445
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=46.55 E-value=25 Score=22.09 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEe
Q 034147 51 PHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T 71 (103)
|...++++.+++.|+++..|+
T Consensus 91 ~sl~eLl~~a~e~GVk~~AC~ 111 (148)
T PF13686_consen 91 PSLEELLEMAKELGVKFYACS 111 (148)
T ss_dssp --HHHHHHHHHHCCEEEEEEH
T ss_pred CCHHHHHHHHHHCCCEEEEeh
Confidence 567889999999999999886
No 446
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=46.53 E-value=65 Score=20.94 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCeEEEEe------CCCchhHHHHHHHHcCCCC
Q 034147 53 AKGILEALKEKGIHVAVAS------RSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T------~~~~~~i~~~~l~~~~l~~ 90 (103)
+.++.++.++.|.+++|+. |++++. +...+..+|+..
T Consensus 84 i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~-Aa~~~~~lGi~a 126 (171)
T cd01580 84 IYDAAMRYKEEGVPLVILAGKEYGSGSSRDW-AAKGPFLLGVKA 126 (171)
T ss_pred HHHHHHHHHHcCCcEEEEccCcccCCCcHHH-HHHHHHHhCCCE
Confidence 5688889999999999888 445555 666677788753
No 447
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=46.19 E-value=73 Score=20.35 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=29.8
Q ss_pred eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC-CCeEEEEeCCCc
Q 034147 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPA 75 (103)
Q Consensus 24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~ 75 (103)
.+++|++.+--. ........+.+++++++++ |.+++|=|+...
T Consensus 85 ~~~lD~E~~~~~---------~~~~~~~~~~~f~~~v~~~~G~~~~iY~~~~~ 128 (184)
T cd06525 85 KPALDVEVNFGL---------SKDELNDYVLRFIEEFEKLSGLKVGIYTYTSF 128 (184)
T ss_pred CeEEEEecCCCC---------CHHHHHHHHHHHHHHHHHHHCCCeEEEecHHH
Confidence 367899875210 0122335678899999998 999999988773
No 448
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=46.13 E-value=10 Score=27.93 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=14.2
Q ss_pred CceEEEeCCCCccccccc
Q 034147 22 PRLVVFDLDYTLWPFYCE 39 (103)
Q Consensus 22 ~~~~~fD~DGTL~~~~~~ 39 (103)
-|++++|+|.|++-+.+.
T Consensus 197 eRVFiWDlDEtiIifhsl 214 (468)
T KOG3107|consen 197 ERVFIWDLDETIIIFHSL 214 (468)
T ss_pred eeEEEeeccchHHHHHHH
Confidence 388999999999875443
No 449
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=45.95 E-value=32 Score=23.94 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=35.8
Q ss_pred HHHHHHhhccCC---CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeC
Q 034147 9 NEALEIIGQFEN---LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (103)
Q Consensus 9 ~~~~~~~~~~~~---~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~ 72 (103)
++.++++....+ ..+++.+|.|=.=-....+++- ....+|...+++++|+++|+++++...
T Consensus 24 ~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~---d~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 24 EEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEF---DPDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEE---CcccCCCHHHHHHHHHHCCCeEEEEec
Confidence 344454444433 2466778875441000001111 123678889999999999999988764
No 450
>PRK04302 triosephosphate isomerase; Provisional
Probab=45.80 E-value=34 Score=22.66 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=21.8
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
.++..+.+.++.+++.|...+++++..
T Consensus 98 ~~~~e~~~~v~~a~~~Gl~~I~~v~~~ 124 (223)
T PRK04302 98 LTLADIEAVVERAKKLGLESVVCVNNP 124 (223)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 456678889999999999888888774
No 451
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=45.61 E-value=54 Score=21.29 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=23.7
Q ss_pred HHHHHHHHHCCCeEEEEeCCCc--hhHHHHHHHHcCCC
Q 034147 54 KGILEALKEKGIHVAVASRSPA--PDIAKTFLHKLGIH 89 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~--~~i~~~~l~~~~l~ 89 (103)
.++++.++++|+.+.+.|=+.. .. ...+..+|.+
T Consensus 212 ~~~v~~~~~~g~~v~~wtvn~~~~~~--~~~l~~~gvd 247 (256)
T PF03009_consen 212 PRLVQEAHKAGLKVYVWTVNDPDVED--MKRLLDLGVD 247 (256)
T ss_dssp HHHHHHHHHTT-EEEEBSB-SHSHHH--HHHHHHHT-S
T ss_pred HHHHHHHHHCCCEEEEEecCCcHHHH--HHHHHhCCCC
Confidence 5799999999999999997775 44 3445666764
No 452
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=45.45 E-value=73 Score=21.50 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 52 g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
.+.+-+..+++.|.+++++.+.. .. ....++.+++..
T Consensus 18 ~~~~~i~~l~~~g~~~VlVhG~g-~~-~~~~~~~~~~~~ 54 (256)
T cd04238 18 AFADDIVLLKQVGINPVIVHGGG-PE-INELLKRLGIES 54 (256)
T ss_pred HHHHHHHHHHHCCCCEEEECCCc-HH-HHHHHHHCCCCC
Confidence 45555666788899999998766 55 588899988854
No 453
>PF11909 NdhN: NADH-quinone oxidoreductase cyanobacterial subunit N; InterPro: IPR020874 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit N. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0016020 membrane
Probab=45.29 E-value=54 Score=20.80 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=27.4
Q ss_pred HHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 55 ~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
..+++|+..|+.....|.+.-...+....+.+|..+
T Consensus 33 Ry~RRLRa~GY~t~~~SArGLGD~~ayLt~~HGVRP 68 (154)
T PF11909_consen 33 RYLRRLRAAGYRTLIISARGLGDPEAYLTKVHGVRP 68 (154)
T ss_pred HHHHHHHhcCceEEEecccCCCCHHHHHhccCCCCC
Confidence 488999999999999998887665445555556543
No 454
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=45.16 E-value=44 Score=18.41 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=36.7
Q ss_pred CCCCceEEEeCCCC---cccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 19 ENLPRLVVFDLDYT---LWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 19 ~~~~~~~~fD~DGT---L~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
.+.+..+++|+++- +++. ..........+-..+.+.|.+.|+.++|+.+=. +. +...+...|+.-+
T Consensus 10 g~a~~f~I~d~~~~~~~~v~~-----~~~~~~~~~~~~~~~~~~l~~~~v~~li~~~iG-~~-~~~~L~~~gI~v~ 78 (94)
T PF02579_consen 10 GRAPYFLIYDVEDGEIKFVEN-----RNPACNEGGGGGDKIAKFLAEEGVDVLICGGIG-EG-AFRALKEAGIKVY 78 (94)
T ss_dssp TT-SEEEEEEEESSCEEEEEE-----EECECCCSSCHSTHHHHHHHHTTESEEEESCSC-HH-HHHHHHHTTSEEE
T ss_pred CCCCEEEEEEEeCCeEEEEEe-----eccccccccccchhHHHHHHHcCCCEEEEeCCC-HH-HHHHHHHCCCEEE
Confidence 34577788999853 4431 100001111223446666777888887776665 44 3667888887543
No 455
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.02 E-value=55 Score=22.60 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=36.3
Q ss_pred hhHHHHHHhhccCCCCceEEEeCCCCcccccccc----------------cccCCCcccChhHHHHHHHHHHCCCeEEEE
Q 034147 7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCEC----------------CYEDEIPYLYPHAKGILEALKEKGIHVAVA 70 (103)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~----------------~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~ 70 (103)
....+++.+-...+.+.++++| |||.-.+-... +.......+......+.+..+++|-.++|-
T Consensus 135 sn~~aM~~~m~~Lk~r~l~flD-s~T~a~S~a~~iAk~~gVp~~~rdvfLD~e~~~~~V~kql~~~~~~Ark~G~ai~IG 213 (250)
T COG2861 135 SNEDAMEKLMEALKERGLYFLD-SGTIANSLAGKIAKEIGVPVIKRDVFLDDEDTEAAVLKQLDAAEKLARKNGSAIGIG 213 (250)
T ss_pred CcHHHHHHHHHHHHHCCeEEEc-ccccccchhhhhHhhcCCceeeeeeeecCcCCHHHHHHHHHHHHHHHHhcCceEEec
Confidence 3444455444445567778888 68876522110 011111223344455667778888888877
Q ss_pred eCCC
Q 034147 71 SRSP 74 (103)
Q Consensus 71 T~~~ 74 (103)
+-.+
T Consensus 214 h~~~ 217 (250)
T COG2861 214 HPHK 217 (250)
T ss_pred CCch
Confidence 7544
No 456
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=44.94 E-value=63 Score=21.56 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~ 87 (103)
...+.+.+..+++.|.++++++|+.-.. +...++..+
T Consensus 17 ~~~~~~~i~~l~~~g~~~viV~sg~g~~-~~~ll~~~~ 53 (239)
T cd04246 17 IKRVAERIKKAVKKGYQVVVVVSAMGGT-TDELIGLAK 53 (239)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCch-HHHHHHHHH
Confidence 4566777778888898888888754344 355555444
No 457
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=44.89 E-value=56 Score=18.26 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=22.4
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
++.-|..+.++.+++...+++++.+...+.
T Consensus 11 kl~~G~~~v~kai~~gkaklViiA~D~~~~ 40 (82)
T PRK13602 11 SIVIGTKQTVKALKRGSVKEVVVAEDADPR 40 (82)
T ss_pred CEEEcHHHHHHHHHcCCeeEEEEECCCCHH
Confidence 456799999999998777777666555555
No 458
>PF13707 RloB: RloB-like protein
Probab=44.87 E-value=79 Score=19.95 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAP 76 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~ 76 (103)
+...++++..+++++.++ +|+.+-+
T Consensus 77 ~~~~~~~~~a~~~~i~l~-~SnPcFE 101 (183)
T PF13707_consen 77 EKLEEAIKKAKRNKINLA-VSNPCFE 101 (183)
T ss_pred HHHHHHHHhccccCeEEE-EecCcHH
Confidence 456678888777765555 5555533
No 459
>PRK11024 colicin uptake protein TolR; Provisional
Probab=44.62 E-value=46 Score=20.48 Aligned_cols=11 Identities=9% Similarity=-0.296 Sum_probs=7.6
Q ss_pred eEEEeCCCCcc
Q 034147 24 LVVFDLDYTLW 34 (103)
Q Consensus 24 ~~~fD~DGTL~ 34 (103)
.+-.|-||+++
T Consensus 64 ~i~i~~~g~~~ 74 (141)
T PRK11024 64 IVEVSGVGQYT 74 (141)
T ss_pred EEEEeCCCcEE
Confidence 35558889874
No 460
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=44.54 E-value=47 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=27.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
..++++.++++|.++.+.|=+....+ + .+..+|.+.
T Consensus 220 ~~~~v~~~~~~G~~v~vWTVNd~~~~-~-~l~~~GVdg 255 (264)
T cd08575 220 WPNLFDHLRKRGIQVYLWVLNDEEDF-E-EAFDLGADG 255 (264)
T ss_pred CHHHHHHHHhcCCcEEEEEECCHHHH-H-HHHhcCCCE
Confidence 35789999999999999997775653 4 456677543
No 461
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=44.54 E-value=35 Score=24.59 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
+...+.++++.++|++|+++|......
T Consensus 278 ~~~~~al~~a~~~GipVV~~Sr~~~G~ 304 (349)
T TIGR00520 278 AAGLKVNETAAKLGVPIVRSSRVPDGM 304 (349)
T ss_pred HHHHHHHHHHHHCCCEEEEEccCCCCc
Confidence 578889999999999999998655444
No 462
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=44.53 E-value=7.3 Score=23.48 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=28.6
Q ss_pred CCCceEEEeCCCCccccccccc-------ccCCCcccChh-HHHHHHHHHHCCCeEEEEe
Q 034147 20 NLPRLVVFDLDYTLWPFYCECC-------YEDEIPYLYPH-AKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~-------~~~~~~~~~~g-~~~~l~~l~~~G~~v~i~T 71 (103)
+.|..+.||+.+|+-.+-.... +.......|.. ..+.|...++.+..++++|
T Consensus 30 ~~P~iV~fdmk~tld~F~~q~~~~~lte~q~~~~~~rF~~~L~~~L~~yq~~H~~vILvs 89 (112)
T TIGR02744 30 NSPVTVAFDMKQTLDAFFDSASQKKLSEAQQKALLGRFNALLEAELQAWQAQHHAIILVS 89 (112)
T ss_pred CCCeEEEEecHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 3467888999999866432110 00111112222 2356666676777777776
No 463
>PLN02229 alpha-galactosidase
Probab=44.45 E-value=96 Score=23.21 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=21.7
Q ss_pred cCh-hHHHHHHHHHHCCCeEEEEeCCC
Q 034147 49 LYP-HAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 49 ~~~-g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
-|| |++.+..+++++|.+++|-|...
T Consensus 125 rFP~G~k~ladyiH~~GlKfGIy~d~G 151 (427)
T PLN02229 125 TFPSGIKLLADYVHSKGLKLGIYSDAG 151 (427)
T ss_pred hcCCcHHHHHHHHHHCCCceEEeccCC
Confidence 344 79999999999999999998543
No 464
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=44.34 E-value=43 Score=25.72 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDI 78 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i 78 (103)
+.+.+.++.++++|.+++.+|+.....+
T Consensus 352 ~e~v~a~~~ak~~ga~~IaIT~~~~S~L 379 (607)
T TIGR01135 352 ADTLAALRLAKELGAKTLGICNVPGSTL 379 (607)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCChH
Confidence 6789999999999999999998876664
No 465
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=44.27 E-value=50 Score=25.10 Aligned_cols=58 Identities=24% Similarity=0.396 Sum_probs=41.8
Q ss_pred CCceE-EEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147 21 LPRLV-VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (103)
Q Consensus 21 ~~~~~-~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~ 87 (103)
.+|++ |||=-.-|++. .+ ..+.+.+.++++..+++|+-+++||-++..- -+..+.++|
T Consensus 254 kPklVfFfDEAHLLF~d------a~--kall~~ieqvvrLIRSKGVGv~fvTQ~P~Di-P~~VL~QLG 312 (502)
T PF05872_consen 254 KPKLVFFFDEAHLLFND------AP--KALLDKIEQVVRLIRSKGVGVYFVTQNPTDI-PDDVLGQLG 312 (502)
T ss_pred CceEEEEEechhhhhcC------CC--HHHHHHHHHHHHHhhccCceEEEEeCCCCCC-CHHHHHhhh
Confidence 46775 56988888862 11 2245678889999999999999999888654 366666665
No 466
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=44.11 E-value=76 Score=20.27 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=20.7
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
.+.++.+++.|+++..+|......+ +.+.+.+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~-~~l~~~l 33 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGI-EELKELL 33 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTH-HHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCH-HHHHHHh
Confidence 3566777888888888887665553 5555544
No 467
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=44.04 E-value=31 Score=23.16 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHCCCeEEE
Q 034147 51 PHAKGILEALKEKGIHVAV 69 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i 69 (103)
+..++++++++++|++|++
T Consensus 52 ~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 52 EDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp HHHHHHHHHHHHTTCEEEE
T ss_pred hhhhhhhhccccccceEEE
Confidence 5688899999999999875
No 468
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=44.03 E-value=66 Score=22.47 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=22.3
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPA 75 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~ 75 (103)
++...+.-+++.|++.|..|.++++++.
T Consensus 51 Hle~kTA~L~~tL~a~GAeV~~~~sNpl 78 (268)
T PF05221_consen 51 HLEAKTAVLAETLKALGAEVRWTGSNPL 78 (268)
T ss_dssp --SHHHHHHHHHHHHTTEEEEEEESSTT
T ss_pred echHHHHHHHHHHHHcCCeEEEecCCCc
Confidence 4556778899999999999999998763
No 469
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=43.90 E-value=46 Score=22.63 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=31.0
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeC-CCchhHHHHHHHHcCCCCcc
Q 034147 49 LYPHAKGILEALKEKGIHVAVASR-SPAPDIAKTFLHKLGIHSMF 92 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~-~~~~~i~~~~l~~~~l~~~~ 92 (103)
-.++..+++++|++.|+|-=+..+ +..+. .+.+.++.|.+.|+
T Consensus 168 tm~~~~~viE~L~eeGiRd~v~v~vGGApv-tq~~a~~iGAD~~~ 211 (227)
T COG5012 168 TMIGMKDVIELLKEEGIRDKVIVMVGGAPV-TQDWADKIGADAYA 211 (227)
T ss_pred HHHHHHHHHHHHHHcCCccCeEEeecCccc-cHHHHHHhCCCccC
Confidence 346788899999999988655554 33333 57888888887765
No 470
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=43.77 E-value=57 Score=21.48 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=21.2
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchh
Q 034147 54 KGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
.++++.++++|+++.+.|-+..+.
T Consensus 184 ~~~v~~~~~~G~~v~~WTvn~~~~ 207 (226)
T cd08568 184 VELLRLLRKLGLKIVLWTVNDPEL 207 (226)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHH
Confidence 689999999999999999877665
No 471
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=43.67 E-value=74 Score=19.33 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
+...+..+++++.|..++-+|..+... ...++++.++.
T Consensus 51 ~~l~~~~~~~~~~~v~vi~Is~d~~~~-~~~~~~~~~~~ 88 (154)
T PRK09437 51 CGLRDNMDELKKAGVVVLGISTDKPEK-LSRFAEKELLN 88 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCC
Confidence 345667777888899888888777677 47778877763
No 472
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=43.64 E-value=62 Score=20.96 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=29.5
Q ss_pred Chh-HHHHHHHHHHCCCe-EEEEeCCCch--hHHHHHHHHcCCCCc
Q 034147 50 YPH-AKGILEALKEKGIH-VAVASRSPAP--DIAKTFLHKLGIHSM 91 (103)
Q Consensus 50 ~~g-~~~~l~~l~~~G~~-v~i~T~~~~~--~i~~~~l~~~~l~~~ 91 (103)
.|. +..+++.+++.|.. +.|..+.... . ....++..|+...
T Consensus 21 ~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~-~~~~~~~~G~~~~ 65 (206)
T PF04015_consen 21 HPEVVRAVVEMLKEAGAKEIIIAESPGSGAAD-TREVFKRSGYEEI 65 (206)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEeCCCcchHh-HHHHHHHcchhhH
Confidence 344 45577999999986 7777766643 4 5778888888764
No 473
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=43.64 E-value=56 Score=22.69 Aligned_cols=36 Identities=11% Similarity=0.270 Sum_probs=26.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCC---------chhHHHHHHHHcCCCC
Q 034147 54 KGILEALKEKGIHVAVASRSP---------APDIAKTFLHKLGIHS 90 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~---------~~~i~~~~l~~~~l~~ 90 (103)
.++++.++++|.++.+.|=++ ...+ ...+..+|.+.
T Consensus 246 ~~~v~~a~~~Gl~v~~WTvn~~~~~~~~~~~~~~-~~l~~~~GVdg 290 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQDM-DALYNAAGVDG 290 (296)
T ss_pred hHHHHHHHHcCCEEEEEEecCcccccccccccCH-HHHHHHhCCCE
Confidence 588999999999999999776 5653 55444336533
No 474
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=43.52 E-value=54 Score=19.84 Aligned_cols=40 Identities=28% Similarity=0.198 Sum_probs=25.6
Q ss_pred CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH
Q 034147 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE 62 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~ 62 (103)
-|-++++|-||.++..........+ ..-+|..++++.+++
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 120 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTYFPPEDR--YGRPGFKTVLEKIRE 120 (124)
T ss_pred CCEEEEECCCCCEEeeeeecCCCCc--CCCcCHHHHHHHHHH
Confidence 4677899999999975432221111 122688888888775
No 475
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=43.49 E-value=65 Score=18.59 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
+....++|+++|+++..-+-..-+. ....+..+|+.
T Consensus 41 ~~~~~~~L~~~g~P~Y~hv~~~N~~-~~r~~~~lg~~ 76 (89)
T PF08444_consen 41 MYHLAQYLHKLGFPFYGHVDEDNEA-SQRLSKSLGFI 76 (89)
T ss_pred HHHHHHHHHHCCCCeEeehHhccHH-HHHHHHHCCCe
Confidence 4567899999999999887666566 47778888764
No 476
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=43.39 E-value=61 Score=21.78 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=27.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (103)
Q Consensus 54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~ 91 (103)
.++++.+++.|.++.+.|=++...+ . .+..+|.+..
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~~~~~-~-~l~~~Gvd~I 243 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNEKADM-I-RLINWGVDGM 243 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHH-H-HHHhcCCCEE
Confidence 5788999999999999997775552 4 4556776543
No 477
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.30 E-value=34 Score=24.43 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=19.8
Q ss_pred cChhHHHHHHHHHHCCCeEEEEe
Q 034147 49 LYPHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T 71 (103)
-+|...+++++|+++|+++++..
T Consensus 83 ~FPdp~~mi~~Lh~~G~kv~l~v 105 (340)
T cd06597 83 RWPNPKGMIDELHEQGVKVLLWQ 105 (340)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEe
Confidence 56889999999999999997644
No 478
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=43.23 E-value=67 Score=21.28 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=26.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
..++++.++++|+++.+.|=+....+ + .+..+|.+
T Consensus 193 ~~~~v~~~~~~gl~v~~wTvn~~~~~-~-~l~~~gvd 227 (234)
T cd08570 193 GQAFLPELKKNGKKVFVWTVNTEEDM-R-YAIRLGVD 227 (234)
T ss_pred CHHHHHHHHHCCCEEEEEecCCHHHH-H-HHHHCCCC
Confidence 46899999999999999997765552 4 35556653
No 479
>PRK13687 hypothetical protein; Provisional
Probab=43.19 E-value=64 Score=18.42 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=35.4
Q ss_pred cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC
Q 034147 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK 63 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~ 63 (103)
|.++.+.+.|+.+.+-.. -.+.=|=+|.++...+. ..+...+..-..+++++|+.+
T Consensus 2 nISk~EQRvLHvLAqGGr--I~~~rd~~gri~~v~C~---TReG~~l~dctl~vF~kLK~k 57 (85)
T PRK13687 2 NISRQEQRTLHVLAQGGR--IEHERDDSGRITAVECY---TREGWLLADCTLAVFKKLKRK 57 (85)
T ss_pred CccHHHHHHHHHHhcCCe--EEEEECCCCcEEEEEEE---ccCCcccCCCCHHHHHHHHhh
Confidence 457889999999998653 11222677877764332 122233334578899999975
No 480
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=43.11 E-value=27 Score=14.61 Aligned_cols=16 Identities=31% Similarity=0.248 Sum_probs=11.7
Q ss_pred CCCceEEEeCCCCccc
Q 034147 20 NLPRLVVFDLDYTLWP 35 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~ 35 (103)
..+..++-|=||.||-
T Consensus 5 n~I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWI 20 (24)
T ss_dssp SCEEEEEE-TTSCEEE
T ss_pred CeEEEEEEcCCcCEEE
Confidence 3467788899999984
No 481
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=42.83 E-value=56 Score=24.08 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=24.7
Q ss_pred EeCCCCcccccccccccCCCcccChh-HHHHHHHHHH-CCCeEEEE
Q 034147 27 FDLDYTLWPFYCECCYEDEIPYLYPH-AKGILEALKE-KGIHVAVA 70 (103)
Q Consensus 27 fD~DGTL~~~~~~~~~~~~~~~~~~g-~~~~l~~l~~-~G~~v~i~ 70 (103)
++.||++.-. ....+++.+ ...+.+.+.+ .|+|+..+
T Consensus 349 ~~aDGVI~~~-------~~~C~~~~~e~~~~~~~l~e~~GIP~L~i 387 (413)
T TIGR02260 349 YEADGLLINS-------IKSCNSFSAGQLLMMREIEKRTGKPAAFI 387 (413)
T ss_pred hCCCEEEEec-------cCCCCcchhhhHHHHHHHHHHcCCCEEEE
Confidence 5688888753 334455555 5556677776 79997777
No 482
>COG2810 Predicted type IV restriction endonuclease [Defense mechanisms]
Probab=42.60 E-value=83 Score=21.85 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=22.2
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
+-....++++++-..|..++++||+.
T Consensus 82 ~akd~qq~~~Yav~~Gv~~~iVtnGr 107 (284)
T COG2810 82 PAKDVQQLAKYAVDKGVEVGIVTNGR 107 (284)
T ss_pred chHHHHHHHHHHHhcCcEEEEEeCCe
Confidence 34567889999999999999999876
No 483
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=42.38 E-value=44 Score=23.26 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
....+-+..|+++|.+++++|++.... -...+.
T Consensus 34 ~~l~~~i~~l~~~g~~vilVssGAv~~-G~~~l~ 66 (284)
T cd04256 34 ASIVEQVSELQSQGREVILVTSGAVAF-GKQRLR 66 (284)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeCcHHh-ChHHhh
Confidence 445666777778999999888776444 344443
No 484
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=42.33 E-value=1.3e+02 Score=21.58 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=40.5
Q ss_pred HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCe-EEEEeCCCchhHHHHHHHHcC
Q 034147 9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIH-VAVASRSPAPDIAKTFLHKLG 87 (103)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~-v~i~T~~~~~~i~~~~l~~~~ 87 (103)
.++.++++.+.+....+++=+=|-++. .|..+++..|-++|.. ++|.|+... .+.+.+.++
T Consensus 41 ~~A~~i~~~ml~d~~~ifL~~tg~mvs---------------~Glr~ii~~Li~~~~VD~iVtTgani---~hD~~~~lg 102 (312)
T PRK01221 41 VRASEILKEMISDADLRFLSFTANLVS---------------TGLRGLIADLIKRGLFNVVITTCGTL---DHDIARSFG 102 (312)
T ss_pred HHHHHHHHHHHcCCCeEEEEecchhHH---------------HHHHHHHHHHHHcCCeeEEEeCCCch---HHHHHHHcC
Confidence 345555555444333566677777664 5889999999998855 444455552 356677777
Q ss_pred CCC
Q 034147 88 IHS 90 (103)
Q Consensus 88 l~~ 90 (103)
...
T Consensus 103 ~~~ 105 (312)
T PRK01221 103 GVY 105 (312)
T ss_pred CCe
Confidence 543
No 485
>smart00642 Aamy Alpha-amylase domain.
Probab=42.21 E-value=36 Score=21.62 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHCCCeEEE
Q 034147 51 PHAKGILEALKEKGIHVAV 69 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i 69 (103)
+...+++++++++|+++++
T Consensus 70 ~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 70 EDFKELVDAAHARGIKVIL 88 (166)
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 5688899999999999874
No 486
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=42.16 E-value=59 Score=19.67 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=25.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~ 86 (103)
...++..|.+.|++-+.+.||+.+. ++.+.+.+
T Consensus 24 ar~v~~~L~~~g~~~i~i~nRt~~r-a~~l~~~~ 56 (135)
T PF01488_consen 24 ARAVAAALAALGAKEITIVNRTPER-AEALAEEF 56 (135)
T ss_dssp HHHHHHHHHHTTSSEEEEEESSHHH-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHH-HHHHHHHc
Confidence 4667899999999966677777777 68887777
No 487
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=41.91 E-value=56 Score=23.09 Aligned_cols=53 Identities=17% Similarity=0.112 Sum_probs=31.4
Q ss_pred CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHH-HHCC-----CeEEEEeCCCchh
Q 034147 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL-KEKG-----IHVAVASRSPAPD 77 (103)
Q Consensus 20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l-~~~G-----~~v~i~T~~~~~~ 77 (103)
+..|++++| ||.++... .......+...+.++++.+ .+.| +..+++||..+..
T Consensus 42 tt~K~Vlld-~~~i~~~~----~~~tg~~~~~~a~~~l~~~l~~~g~~~~~v~~~~~TGyGr~~ 100 (293)
T TIGR03192 42 VSSQAVLVC-DGELYGYN----SMRTGNNSPDSAKNALQGIMDKIGMKLEDINYVVGTGYGRVN 100 (293)
T ss_pred hhEEEEEEe-CCEEEEEE----eecCCCCHHHHHHHHHHHHHHHcCCcccceEEEEEECcchhh
Confidence 456889999 78766432 1222333445667777665 4444 3446678777544
No 488
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=41.88 E-value=29 Score=21.73 Aligned_cols=41 Identities=32% Similarity=0.352 Sum_probs=26.8
Q ss_pred CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (103)
Q Consensus 45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~ 89 (103)
+.....|-+..+..+|+++|+.+.|+.+.. +..+++--+-+
T Consensus 8 e~Pvq~p~alYl~~~Lk~~G~~v~Va~npA----A~kLl~vaDPe 48 (139)
T PF09001_consen 8 EVPVQTPSALYLSYKLKKKGFEVVVAGNPA----ALKLLEVADPE 48 (139)
T ss_dssp -STTHHHHHHHHHHHHHCTTEEEEEEE-HH----HHHHHHHHSTT
T ss_pred CCcchhHHHHHHHHHHHhcCCeEEEecCHH----HHhHhhhcCCc
Confidence 334445777888999999999998776533 45556655433
No 489
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=41.78 E-value=75 Score=18.84 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=24.4
Q ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (103)
Q Consensus 48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~ 84 (103)
.+.-|..+.++.++....+.+|+++...+.. ...++
T Consensus 25 Klv~G~~~vlkalk~gkaklViiA~D~~~~~-kkki~ 60 (108)
T PTZ00106 25 KYTLGTKSTLKALRNGKAKLVIISNNCPPIR-RSEIE 60 (108)
T ss_pred CeeecHHHHHHHHHcCCeeEEEEeCCCCHHH-HHHHH
Confidence 3557899999999977677777766655552 44443
No 490
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=41.77 E-value=56 Score=19.94 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHHHCCC-eEEEEeCCCchhHHHHHHHHcCCCC
Q 034147 50 YPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHS 90 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~-~v~i~T~~~~~~i~~~~l~~~~l~~ 90 (103)
++.+....+.+++.|. +++|+|+..+..-+...+++.+...
T Consensus 83 ~ena~~~~~~~~~~~~~~iilVT~~~H~~Ra~~~~~~~~~~~ 124 (155)
T PF02698_consen 83 YENARFSKRLLKERGWQSIILVTSPYHMRRARMIFRKVGPDA 124 (155)
T ss_dssp HHHHHHHHHHHHT-SSS-EEEE--CCCHHHHHHHHHHHH--B
T ss_pred HHHHHHHHHHHHhhcCCeEEEECCHHHHHHHHHHHHHhCCCC
Confidence 3566777777887774 8889998886544567777776554
No 491
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=41.46 E-value=38 Score=28.17 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=39.1
Q ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeee
Q 034147 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS 99 (103)
Q Consensus 47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~ 99 (103)
.++.+....+++.|.+..++.+.|||-+--. +-...++.|+-... ..++.
T Consensus 704 NkLK~~T~~VI~eL~~AnIRtVMcTGDNllT-aisVakeCgmi~p~--~~v~~ 753 (1140)
T KOG0208|consen 704 NKLKEETKRVIDELNRANIRTVMCTGDNLLT-AISVAKECGMIEPQ--VKVII 753 (1140)
T ss_pred cccccccHHHHHHHHhhcceEEEEcCCchhe-eeehhhcccccCCC--CeEEE
Confidence 4577889999999999999999999998655 45567788877655 45544
No 492
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=41.12 E-value=46 Score=17.29 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 034147 53 AKGILEALKEKGIHVAVASRSP 74 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~ 74 (103)
..+++++++++|+..+.+|.-.
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC
Confidence 5789999999999999999444
No 493
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=41.10 E-value=85 Score=20.98 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=22.2
Q ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH
Q 034147 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83 (103)
Q Consensus 49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l 83 (103)
....+.+.+..+++.|.++++++|+.... +...+
T Consensus 16 ~~~~~~~~i~~l~~~g~~~vvV~sg~g~~-~~~l~ 49 (239)
T cd04261 16 RIKRVAERIKKRKKKGNQVVVVVSAMGGT-TDELI 49 (239)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCch-hHHHH
Confidence 34566777788888898888877763333 34443
No 494
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=41.07 E-value=55 Score=22.95 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
+|+..+-+.|++.|.++.++|......+....++..+.
T Consensus 63 ~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~ 100 (291)
T PF14336_consen 63 PGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGL 100 (291)
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 79999999999999999999977755545666665554
No 495
>PF09338 Gly_reductase: Glycine/sarcosine/betaine reductase component B subunits; InterPro: IPR015417 This is a family of glycine reductase, sarcosine reductase and betaine reductases. These enzymes catalyse the following reactions: sarcosine reductase: Acetyl phosphate + methylamine + thioredoxin disulphide = N-methylglycine + phosphate + thioredoxin. glycine reductase: Acetyl phosphate + NH3 + thioredoxin disulphide = glycine + phosphate + thioredoxin. betaine reductase: Acetyl phosphate + trimethylamine + thioredoxin disulphide = N,N,N-trimethylglycine + phosphate + thioredoxin. ; GO: 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process
Probab=41.02 E-value=31 Score=25.71 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=28.5
Q ss_pred EEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe
Q 034147 26 VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (103)
Q Consensus 26 ~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T 71 (103)
.+..||.++. ..+ ...+.-.....++++.++|++++.+|
T Consensus 301 ~LgaDGaIvs------~eG-~GN~d~D~~~~~~~~e~~GIktV~it 339 (428)
T PF09338_consen 301 MLGADGAIVS------EEG-FGNPDVDFAMNIEEIEKRGIKTVGIT 339 (428)
T ss_pred HhCCCEEEEE------ecC-CCchhHHHHHHHHHHHHCCCCEEEec
Confidence 4578888885 222 22345556778899999999999998
No 496
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=40.95 E-value=52 Score=19.62 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=8.7
Q ss_pred eEEEeCCCCccc
Q 034147 24 LVVFDLDYTLWP 35 (103)
Q Consensus 24 ~~~fD~DGTL~~ 35 (103)
.+-.|-||.++-
T Consensus 53 ~v~i~~~g~~~~ 64 (121)
T TIGR02804 53 LITITADNQLYF 64 (121)
T ss_pred EEEEECCCCEEE
Confidence 456688898873
No 497
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=40.77 E-value=57 Score=17.17 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=8.3
Q ss_pred HHHHCCCeEEEEeCCC
Q 034147 59 ALKEKGIHVAVASRSP 74 (103)
Q Consensus 59 ~l~~~G~~v~i~T~~~ 74 (103)
.|++.|++++.+++..
T Consensus 2 ~L~~~~~~~~~i~~~~ 17 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDM 17 (78)
T ss_dssp HHHHTTSSEEEESTTS
T ss_pred ChHHCCCcEEEEECCC
Confidence 3455555555555443
No 498
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=40.65 E-value=44 Score=19.61 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchh
Q 034147 53 AKGILEALKEKGIHVAVASRSPAPD 77 (103)
Q Consensus 53 ~~~~l~~l~~~G~~v~i~T~~~~~~ 77 (103)
+.++.+.|.++|+.+.++|......
T Consensus 7 ~~~l~~~L~~~G~~V~v~~~~~~~~ 31 (160)
T PF13579_consen 7 VRELARALAARGHEVTVVTPQPDPE 31 (160)
T ss_dssp HHHHHHHHHHTT-EEEEEEE---GG
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCc
Confidence 5678899999999999999655443
No 499
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=40.56 E-value=39 Score=20.07 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=13.5
Q ss_pred CCceEEEeCCCCccc
Q 034147 21 LPRLVVFDLDYTLWP 35 (103)
Q Consensus 21 ~~~~~~fD~DGTL~~ 35 (103)
.-++-+||-||+|+-
T Consensus 18 ~~RARlyd~dG~Ll~ 32 (112)
T PF13756_consen 18 RTRARLYDPDGNLLA 32 (112)
T ss_pred CceEEEECCCCCEEe
Confidence 578999999999986
No 500
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=40.51 E-value=13 Score=24.40 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (103)
Q Consensus 50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l 88 (103)
.+++.++.++|.+.|+.+. +|++.... ++..|+
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~GTAk~-----L~e~GI 42 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGGTAKF-----LKEAGI 42 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccHHHHH-----HHHcCC
Confidence 3688999999999999995 77665333 565555
Done!