Query 034148
Match_columns 103
No_of_seqs 121 out of 487
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:34:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1id3_B Histone H4; nucleosome 100.0 7.5E-44 2.6E-48 238.0 9.6 102 2-103 1-102 (102)
2 1tzy_D Histone H4-VI; histone- 100.0 1.7E-42 5.9E-47 231.4 9.4 103 1-103 1-103 (103)
3 2yfw_B Histone H4, H4; cell cy 100.0 1.5E-42 5E-47 231.8 8.7 103 1-103 1-103 (103)
4 2hue_C Histone H4; mini beta s 100.0 6.5E-35 2.2E-39 188.4 8.3 84 20-103 1-84 (84)
5 2l5a_A Histone H3-like centrom 99.9 1.2E-25 4.2E-30 167.8 3.3 90 10-103 146-235 (235)
6 2ly8_A Budding yeast chaperone 99.9 1.7E-23 5.9E-28 143.1 7.1 64 40-103 58-121 (121)
7 3b0c_T CENP-T, centromere prot 99.9 9.3E-23 3.2E-27 137.6 9.0 73 27-99 5-77 (111)
8 1ku5_A HPHA, archaeal histon; 99.9 1.3E-22 4.5E-27 126.3 8.8 65 28-92 5-69 (70)
9 1taf_B TFIID TBP associated fa 99.9 1.5E-21 5.1E-26 122.3 8.5 66 27-92 4-69 (70)
10 1b67_A Protein (histone HMFA); 99.8 2E-20 6.9E-25 115.5 8.7 66 29-94 2-67 (68)
11 1f1e_A Histone fold protein; a 99.8 5.4E-20 1.8E-24 130.3 9.4 71 29-99 4-75 (154)
12 1f1e_A Histone fold protein; a 99.8 6.4E-20 2.2E-24 129.9 9.2 66 29-94 82-147 (154)
13 1n1j_A NF-YB; histone-like PAI 99.8 3.3E-19 1.1E-23 116.3 9.6 76 24-99 3-80 (93)
14 2yfv_A Histone H3-like centrom 99.7 4.9E-18 1.7E-22 112.7 8.2 77 16-92 14-98 (100)
15 2hue_B Histone H3; mini beta s 99.7 1.4E-17 4.7E-22 105.9 9.5 69 29-97 3-76 (77)
16 1tzy_C Histone H3; histone-fol 99.7 1.3E-17 4.4E-22 115.9 9.4 78 20-97 53-135 (136)
17 3nqu_A Histone H3-like centrom 99.7 8.5E-18 2.9E-22 117.2 8.5 81 16-96 48-135 (140)
18 1taf_A TFIID TBP associated fa 99.7 1.5E-17 5.1E-22 103.5 8.6 62 33-94 5-66 (68)
19 3r45_A Histone H3-like centrom 99.7 8.2E-18 2.8E-22 118.9 7.0 81 16-96 64-151 (156)
20 3nqj_A Histone H3-like centrom 99.7 3.8E-17 1.3E-21 105.0 8.4 69 29-97 3-78 (82)
21 1tzy_A Histone H2A-IV; histone 99.7 1.9E-16 6.5E-21 109.2 8.8 87 1-92 1-89 (129)
22 2nqb_C Histone H2A; nucleosome 99.7 2.3E-16 7.8E-21 108.0 8.6 86 2-92 1-87 (123)
23 3b0c_W CENP-W, centromere prot 99.7 2.7E-16 9.1E-21 99.2 7.8 67 28-94 3-70 (76)
24 1jfi_B DR1 protein, transcript 99.7 3.9E-16 1.3E-20 112.7 9.5 76 24-99 10-86 (179)
25 2f8n_K Histone H2A type 1; nuc 99.6 6.7E-16 2.3E-20 108.7 8.4 88 1-93 20-109 (149)
26 3b0b_B CENP-S, centromere prot 99.6 6.4E-16 2.2E-20 103.6 6.8 62 34-95 24-88 (107)
27 4dra_A Centromere protein S; D 99.6 6.3E-16 2.1E-20 104.4 6.5 62 34-95 32-96 (113)
28 2f8n_G Core histone macro-H2A. 99.6 2.4E-15 8.2E-20 102.5 8.7 68 24-92 18-86 (120)
29 2byk_B Chrac-14; nucleosome sl 99.6 2.7E-15 9.2E-20 103.2 8.6 75 25-99 5-81 (128)
30 1f66_C Histone H2A.Z; nucleoso 99.6 9.3E-15 3.2E-19 100.6 8.9 91 1-93 1-93 (128)
31 1id3_C Histone H2A.1; nucleoso 99.6 1E-14 3.6E-19 100.7 9.1 64 29-92 25-89 (131)
32 3v9r_A MHF1, uncharacterized p 99.5 3E-14 1E-18 92.9 7.8 61 34-94 17-80 (90)
33 3vh5_A CENP-S; histone fold, c 99.5 4E-14 1.4E-18 98.6 6.9 62 34-95 24-88 (140)
34 1n1j_B NF-YC; histone-like PAI 99.4 6.9E-13 2.4E-17 87.0 9.1 70 26-95 16-86 (97)
35 4g92_C HAPE; transcription fac 99.3 1.5E-11 5.1E-16 83.4 9.5 68 27-94 39-107 (119)
36 1jfi_A Transcription regulator 99.3 3.6E-12 1.2E-16 83.8 6.1 67 27-93 9-76 (98)
37 2l5a_A Histone H3-like centrom 99.2 3.4E-11 1.2E-15 89.9 6.7 70 29-98 11-88 (235)
38 2jss_A Chimera of histone H2B. 99.1 2.2E-10 7.7E-15 83.0 8.3 64 29-92 105-170 (192)
39 2byk_A Chrac-16; nucleosome sl 99.1 1.8E-10 6.2E-15 80.1 6.5 69 26-94 16-86 (140)
40 1tzy_B Histone H2B; histone-fo 98.9 9.9E-09 3.4E-13 70.2 8.6 62 33-94 40-102 (126)
41 2nqb_D Histone H2B; nucleosome 98.8 1.5E-08 5.3E-13 69.0 8.3 62 33-94 37-99 (123)
42 4gqb_C Histone H4 peptide; TIM 98.7 3.7E-09 1.3E-13 52.7 1.4 23 1-23 1-23 (26)
43 1h3o_B Transcription initiatio 98.6 4.5E-07 1.5E-11 57.1 9.1 67 28-94 4-71 (76)
44 2jss_A Chimera of histone H2B. 98.4 9.9E-07 3.4E-11 63.8 8.1 61 33-93 7-68 (192)
45 2ly8_A Budding yeast chaperone 98.3 9.2E-07 3.1E-11 60.1 5.6 52 29-80 1-60 (121)
46 4dra_E Centromere protein X; D 98.0 6.9E-05 2.4E-09 47.9 8.7 67 25-91 8-77 (84)
47 3b0b_C CENP-X, centromere prot 97.9 0.00012 4E-09 46.5 8.8 66 26-91 5-73 (81)
48 1bh9_B TAFII28; histone fold, 97.7 0.00033 1.1E-08 45.0 8.3 66 29-94 16-82 (89)
49 3ksy_A SOS-1, SON of sevenless 97.0 0.0021 7.3E-08 55.8 8.5 65 29-93 104-168 (1049)
50 3v9r_B MHF2, uncharacterized p 96.5 0.011 3.7E-07 37.9 6.5 62 30-91 2-73 (88)
51 1h3o_A Transcription initiatio 95.8 0.014 4.6E-07 36.4 4.3 42 35-76 12-53 (75)
52 1wwi_A Hypothetical protein TT 94.2 0.13 4.4E-06 35.8 6.0 59 29-87 2-60 (148)
53 3uk6_A RUVB-like 2; hexameric 94.0 0.3 1E-05 36.0 8.3 64 29-93 258-329 (368)
54 3kw6_A 26S protease regulatory 93.2 0.17 5.9E-06 30.2 4.7 43 52-94 27-73 (78)
55 1r4v_A Hypothetical protein AQ 92.2 0.19 6.6E-06 35.6 4.5 59 29-87 26-84 (171)
56 3k1j_A LON protease, ATP-depen 92.2 0.71 2.4E-05 37.3 8.4 50 44-93 312-374 (604)
57 2dzn_B 26S protease regulatory 92.2 0.3 1E-05 29.5 4.9 32 63-94 37-68 (82)
58 2v1u_A Cell division control p 92.0 1 3.6E-05 32.8 8.6 66 29-94 200-276 (387)
59 3bos_A Putative DNA replicatio 91.7 0.56 1.9E-05 31.8 6.4 51 40-92 188-241 (242)
60 2krk_A 26S protease regulatory 91.5 0.36 1.2E-05 29.8 4.7 32 63-94 50-81 (86)
61 1g8p_A Magnesium-chelatase 38 90.6 0.91 3.1E-05 33.0 7.0 48 46-93 267-321 (350)
62 3vlf_B 26S protease regulatory 90.6 0.35 1.2E-05 29.8 4.0 32 63-94 40-71 (88)
63 3aji_B S6C, proteasome (prosom 90.0 0.4 1.4E-05 28.8 3.9 32 63-94 40-71 (83)
64 2chg_A Replication factor C sm 89.8 0.97 3.3E-05 29.9 6.0 61 29-92 160-224 (226)
65 1in4_A RUVB, holliday junction 89.3 1.5 5.1E-05 32.5 7.3 66 30-96 180-252 (334)
66 2qby_A CDC6 homolog 1, cell di 88.6 4.1 0.00014 29.5 9.2 67 28-94 195-272 (386)
67 1fnn_A CDC6P, cell division co 88.3 2.5 8.6E-05 30.9 7.9 66 29-94 192-274 (389)
68 1jr3_D DNA polymerase III, del 87.7 0.8 2.7E-05 33.8 4.9 59 35-94 151-209 (343)
69 2r44_A Uncharacterized protein 87.2 4.2 0.00014 29.5 8.5 48 46-93 226-296 (331)
70 3fes_A ATP-dependent CLP endop 85.7 4.5 0.00016 26.4 7.4 35 60-94 83-117 (145)
71 2qby_B CDC6 homolog 3, cell di 85.5 4.4 0.00015 29.6 7.9 65 28-94 195-270 (384)
72 2c9o_A RUVB-like 1; hexameric 85.1 4 0.00014 31.6 7.8 66 28-94 364-437 (456)
73 2kru_A Light-independent proto 85.0 1.2 4.1E-05 26.6 3.7 51 45-95 4-54 (63)
74 2l09_A ASR4154 protein; proto- 84.8 0.92 3.1E-05 27.0 3.1 49 46-94 4-52 (62)
75 1lv7_A FTSH; alpha/beta domain 83.3 1.6 5.5E-05 30.6 4.5 49 46-94 199-252 (257)
76 1u5t_A Appears to BE functiona 83.1 1.9 6.4E-05 31.8 4.9 62 34-101 63-147 (233)
77 1njg_A DNA polymerase III subu 82.8 2.7 9.1E-05 27.9 5.3 62 28-91 183-248 (250)
78 3fh2_A Probable ATP-dependent 82.3 6.5 0.00022 25.6 7.0 34 60-93 83-116 (146)
79 3f9v_A Minichromosome maintena 81.9 0.71 2.4E-05 37.6 2.4 66 29-94 501-587 (595)
80 1ich_A TNF-1, tumor necrosis f 80.7 4 0.00014 26.8 5.4 66 28-96 21-87 (112)
81 3h4m_A Proteasome-activating n 79.6 2.6 8.8E-05 29.8 4.5 44 51-94 211-258 (285)
82 3f8t_A Predicted ATPase involv 79.4 10 0.00034 30.9 8.3 66 29-94 393-483 (506)
83 4b4t_I 26S protease regulatory 79.0 2.4 8.4E-05 33.8 4.6 49 46-94 370-423 (437)
84 4b4t_J 26S protease regulatory 78.7 2.6 8.8E-05 33.2 4.6 42 52-93 343-388 (405)
85 2y1q_A CLPC N-domain, negative 78.1 11 0.00038 24.2 7.0 34 60-93 81-114 (150)
86 3pfi_A Holliday junction ATP-d 78.1 11 0.00038 27.2 7.7 66 30-96 184-256 (338)
87 1ixz_A ATP-dependent metallopr 76.4 2.2 7.7E-05 29.8 3.4 46 46-91 203-253 (254)
88 2qz4_A Paraplegin; AAA+, SPG7, 75.8 1.6 5.4E-05 30.3 2.4 57 37-94 188-249 (262)
89 3pvs_A Replication-associated 75.4 7.4 0.00025 30.4 6.4 67 28-94 163-244 (447)
90 1iy2_A ATP-dependent metallopr 74.9 2.5 8.6E-05 30.1 3.4 46 46-91 227-277 (278)
91 4b4t_L 26S protease subunit RP 74.6 3.8 0.00013 32.4 4.5 43 52-94 376-422 (437)
92 4b4t_H 26S protease regulatory 74.5 3.1 0.00011 33.4 4.1 43 52-94 404-450 (467)
93 1sxj_D Activator 1 41 kDa subu 73.9 1.9 6.6E-05 31.2 2.6 64 29-93 191-262 (353)
94 1w5s_A Origin recognition comp 73.3 16 0.00055 26.7 7.6 68 27-94 212-293 (412)
95 3cuq_A Vacuolar-sorting protei 71.2 13 0.00043 27.3 6.4 61 33-94 42-127 (234)
96 3nbx_X ATPase RAVA; AAA+ ATPas 70.6 14 0.00047 29.5 7.0 59 30-88 209-280 (500)
97 4b4t_K 26S protease regulatory 69.7 5.4 0.00018 31.4 4.4 48 47-94 362-414 (428)
98 3h87_C Putative uncharacterize 68.9 12 0.0004 22.8 4.9 31 59-93 28-58 (73)
99 4b4t_M 26S protease regulatory 68.7 4.5 0.00016 31.9 3.8 43 52-94 376-422 (434)
100 1hqc_A RUVB; extended AAA-ATPa 66.4 11 0.00039 26.8 5.3 66 29-95 167-239 (324)
101 3mse_B Calcium-dependent prote 64.9 25 0.00087 22.7 8.2 66 31-96 3-70 (180)
102 1uxc_A FRUR (1-57), fructose r 63.8 13 0.00044 21.5 4.3 32 29-62 11-45 (65)
103 1khy_A CLPB protein; alpha hel 63.2 13 0.00043 23.8 4.6 33 62-94 9-41 (148)
104 2y1q_A CLPC N-domain, negative 61.5 15 0.00053 23.5 4.8 32 63-94 10-41 (150)
105 1bh9_A TAFII18; histone fold, 60.7 19 0.00063 19.7 5.7 39 34-72 5-44 (45)
106 3fes_A ATP-dependent CLP endop 60.7 16 0.00055 23.6 4.8 31 64-94 13-43 (145)
107 3i5g_C Myosin catalytic light 60.7 24 0.00081 22.9 5.7 71 27-98 25-118 (159)
108 1k6k_A ATP-dependent CLP prote 60.6 12 0.00041 23.9 4.1 32 62-93 83-114 (143)
109 2ovk_C Myosin catalytic light 60.4 17 0.00057 22.8 4.7 31 67-97 87-117 (159)
110 3u02_A Putative transcription- 59.1 18 0.00061 26.8 5.2 53 49-101 66-137 (252)
111 1k6k_A ATP-dependent CLP prote 59.0 13 0.00045 23.6 4.1 30 62-91 5-34 (143)
112 3pm8_A PFCDPK2, calcium-depend 58.1 35 0.0012 22.6 6.3 68 29-96 21-88 (197)
113 1jr3_A DNA polymerase III subu 57.8 14 0.00048 26.7 4.5 62 29-92 177-242 (373)
114 3zri_A CLPB protein, CLPV; cha 57.7 15 0.0005 25.1 4.3 36 59-94 25-60 (171)
115 1ofh_A ATP-dependent HSL prote 56.5 30 0.001 24.2 5.9 49 46-94 234-299 (310)
116 3zri_A CLPB protein, CLPV; cha 56.2 15 0.00052 25.0 4.2 33 60-92 100-133 (171)
117 3fh2_A Probable ATP-dependent 56.1 19 0.00067 23.2 4.6 32 63-94 11-42 (146)
118 2a1j_A DNA repair endonuclease 55.8 11 0.00037 21.7 2.9 34 25-58 7-41 (63)
119 3i5g_B Myosin regulatory light 55.8 38 0.0013 21.7 6.1 72 27-98 30-118 (153)
120 1khy_A CLPB protein; alpha hel 55.3 14 0.00049 23.6 3.8 33 60-92 84-116 (148)
121 2chq_A Replication factor C sm 54.5 17 0.00057 25.5 4.3 61 29-92 160-224 (319)
122 3ox6_A Calcium-binding protein 54.2 34 0.0012 20.7 8.8 70 27-97 25-121 (153)
123 1l8q_A Chromosomal replication 54.1 8.6 0.00029 27.8 2.8 53 39-93 179-239 (324)
124 2l09_A ASR4154 protein; proto- 53.9 23 0.0008 20.8 4.2 28 32-59 25-52 (62)
125 1iqp_A RFCS; clamp loader, ext 53.8 25 0.00086 24.7 5.2 60 29-91 168-231 (327)
126 2z4s_A Chromosomal replication 53.4 24 0.00083 27.2 5.4 55 39-95 276-333 (440)
127 2r62_A Cell division protease 53.3 3.9 0.00013 28.6 0.8 33 62-94 221-253 (268)
128 2dhr_A FTSH; AAA+ protein, hex 51.9 12 0.00042 29.8 3.6 59 36-94 207-271 (499)
129 2ce7_A Cell division protein F 51.6 18 0.00063 28.6 4.5 49 46-94 203-256 (476)
130 3b9p_A CG5977-PA, isoform A; A 51.5 23 0.00079 24.9 4.7 50 46-95 208-273 (297)
131 2lmt_A Calmodulin-related prot 51.4 42 0.0014 20.9 8.2 32 67-98 85-116 (148)
132 3vfd_A Spastin; ATPase, microt 50.6 31 0.0011 25.7 5.5 49 46-94 301-365 (389)
133 3d8b_A Fidgetin-like protein 1 50.4 41 0.0014 24.9 6.1 58 36-94 261-334 (357)
134 3u0k_A Rcamp; fluorescent prot 48.0 1E+02 0.0035 24.5 8.7 69 29-98 318-408 (440)
135 1z00_B DNA repair endonuclease 47.3 11 0.00037 23.2 2.0 35 25-59 21-56 (84)
136 1sxj_B Activator 1 37 kDa subu 47.1 42 0.0014 23.5 5.5 62 29-93 165-230 (323)
137 2l8n_A Transcriptional repress 46.6 20 0.00069 20.7 3.1 32 29-62 20-51 (67)
138 2lhi_A Calmodulin, serine/thre 46.4 59 0.002 21.2 6.2 71 27-98 25-117 (176)
139 3k21_A PFCDPK3, calcium-depend 45.8 30 0.001 22.8 4.3 28 70-97 57-84 (191)
140 1qzm_A ATP-dependent protease 45.7 15 0.00052 23.1 2.6 33 59-91 54-89 (94)
141 2of5_A Death domain-containing 44.4 28 0.00095 22.4 3.8 64 34-101 37-103 (114)
142 3ezq_A Tumor necrosis factor r 42.4 35 0.0012 22.3 4.1 64 27-94 15-79 (115)
143 2o71_A Death domain-containing 42.2 35 0.0012 21.9 4.1 64 34-101 37-103 (115)
144 2lv7_A Calcium-binding protein 41.6 43 0.0015 20.2 4.3 41 45-97 28-68 (100)
145 3oq9_A Tumor necrosis factor r 40.9 18 0.0006 22.4 2.3 65 28-96 8-73 (86)
146 2obh_A Centrin-2; DNA repair c 38.9 66 0.0023 19.7 8.2 31 67-97 81-111 (143)
147 1k94_A Grancalcin; penta-EF-ha 38.8 70 0.0024 19.9 9.4 72 26-97 12-102 (165)
148 2i5u_A DNAD domain protein; st 38.3 62 0.0021 19.2 7.0 48 35-82 4-60 (83)
149 1r6b_X CLPA protein; AAA+, N-t 37.8 1E+02 0.0034 25.1 7.0 50 45-94 371-433 (758)
150 1wlz_A DJBP, CAP-binding prote 37.3 61 0.0021 18.8 6.0 29 69-97 28-56 (105)
151 3k6j_A Protein F01G10.3, confi 36.1 61 0.0021 25.6 5.3 37 59-98 237-273 (460)
152 1sxj_A Activator 1 95 kDa subu 35.6 30 0.001 27.1 3.4 60 30-92 209-272 (516)
153 2znd_A Programmed cell death p 34.7 85 0.0029 19.7 7.8 31 67-97 76-106 (172)
154 4ds7_A Calmodulin, CAM; protei 33.8 76 0.0026 18.9 7.8 32 66-97 85-116 (147)
155 3or8_A Transcription elongatio 33.3 17 0.0006 25.8 1.5 56 46-101 75-135 (197)
156 1qvr_A CLPB protein; coiled co 33.3 1.5E+02 0.005 24.7 7.4 55 31-91 42-115 (854)
157 3qrx_A Centrin; calcium-bindin 33.1 87 0.003 19.3 7.7 31 67-97 103-133 (169)
158 1dp3_A TRAM protein; helix-loo 32.9 72 0.0025 18.3 4.2 43 47-99 7-49 (55)
159 3n0u_A Probable N-glycosylase/ 32.7 74 0.0025 22.6 4.9 38 29-66 155-198 (219)
160 2kng_A Protein LSR2; DNA-bindi 31.6 76 0.0026 18.2 4.3 27 32-58 15-46 (55)
161 2dt5_A AT-rich DNA-binding pro 31.5 42 0.0014 23.6 3.3 28 29-56 2-38 (211)
162 3eie_A Vacuolar protein sortin 31.4 30 0.001 25.0 2.6 15 81-95 285-299 (322)
163 1gjy_A Sorcin, CP-22, V19; cal 31.1 98 0.0034 19.3 9.4 72 26-97 14-104 (167)
164 3m6a_A ATP-dependent protease 30.9 97 0.0033 24.5 5.7 48 46-93 282-340 (543)
165 3axj_B TRAX, translin associat 30.9 1.5E+02 0.0053 21.9 6.5 17 1-19 1-17 (298)
166 1juo_A Sorcin; calcium-binding 30.6 1.1E+02 0.0038 19.8 8.1 72 26-97 45-135 (198)
167 2qp9_X Vacuolar protein sortin 30.0 1.3E+02 0.0044 22.2 6.0 15 80-94 317-331 (355)
168 2lhi_A Calmodulin, serine/thre 29.7 40 0.0014 22.1 2.8 42 43-96 1-42 (176)
169 2ph7_A Uncharacterized protein 29.4 65 0.0022 23.7 4.0 29 63-93 3-31 (246)
170 1fad_A Protein (FADD protein); 28.9 51 0.0017 20.0 3.1 63 29-96 23-86 (99)
171 1u5t_B Defective in vacuolar p 28.5 82 0.0028 21.5 4.3 15 80-94 58-72 (169)
172 3fwb_A Cell division control p 28.2 1E+02 0.0035 18.6 8.9 68 29-97 39-128 (161)
173 2i7a_A Calpain 13; calcium-dep 28.0 1.3E+02 0.0044 19.7 7.5 27 67-94 78-104 (174)
174 2xp1_A SPT6; transcription, IW 28.0 15 0.00052 25.5 0.5 55 46-101 71-127 (178)
175 3rd3_A Probable transcriptiona 27.6 53 0.0018 20.7 3.1 45 29-73 27-76 (197)
176 3u61_B DNA polymerase accessor 27.2 22 0.00074 25.5 1.2 53 37-93 183-236 (324)
177 1qpz_A PURA, protein (purine n 26.9 89 0.003 22.2 4.5 30 29-60 11-40 (340)
178 3pxg_A Negative regulator of g 26.8 72 0.0024 24.6 4.2 35 60-94 81-115 (468)
179 2ovk_B RLC, myosin regulatory 26.7 1.1E+02 0.0038 18.5 5.8 71 27-98 30-118 (153)
180 2vt3_A REX, redox-sensing tran 26.7 43 0.0015 23.7 2.7 27 29-55 7-42 (215)
181 3aek_B Light-independent proto 26.7 14 0.00047 29.6 0.0 50 44-94 473-523 (525)
182 2ktg_A Calmodulin, putative; e 26.4 87 0.003 17.2 4.8 20 74-93 59-78 (85)
183 3pxg_A Negative regulator of g 25.9 97 0.0033 23.9 4.8 32 63-94 10-41 (468)
184 1tiz_A Calmodulin-related prot 25.9 76 0.0026 16.3 3.8 15 81-95 17-31 (67)
185 2aao_A CDPK, calcium-dependent 25.8 1.1E+02 0.0039 18.7 4.4 20 77-96 39-58 (166)
186 2dae_A KIAA0733 protein; mitog 25.6 1.2E+02 0.004 18.4 4.1 39 23-63 17-55 (75)
187 2kz2_A Calmodulin, CAM; TR2C, 25.1 1.1E+02 0.0036 17.7 4.3 18 78-95 42-59 (94)
188 2mys_C Myosin; muscle protein, 24.7 1.2E+02 0.004 18.1 7.6 31 67-97 87-117 (149)
189 3ctv_A HBD-10, 3-hydroxyacyl-C 24.1 1.3E+02 0.0045 18.4 4.9 37 59-98 20-57 (110)
190 1h6z_A Pyruvate phosphate diki 23.9 38 0.0013 29.4 2.2 77 13-92 97-187 (913)
191 3keo_A Redox-sensing transcrip 23.7 45 0.0015 23.7 2.3 62 29-93 6-77 (212)
192 1top_A Troponin C; contractIle 23.6 1.3E+02 0.0044 18.2 7.5 33 65-97 96-128 (162)
193 1j7q_A CAVP, calcium vector pr 23.6 1E+02 0.0035 17.0 3.9 20 77-96 26-45 (86)
194 1cn3_F Fragment of coat protei 23.4 39 0.0013 16.6 1.3 18 10-27 3-20 (29)
195 3iv7_A Alcohol dehydrogenase I 23.3 51 0.0018 25.0 2.7 56 32-93 292-348 (364)
196 3t98_B Nucleoporin NUP58/NUP45 23.2 1E+02 0.0034 19.2 3.6 18 77-94 39-56 (93)
197 3sjs_A URE3-BP sequence specif 23.2 1.7E+02 0.0059 19.5 7.6 32 67-98 119-150 (220)
198 1wxp_A THO complex subunit 1; 23.1 1.3E+02 0.0044 18.7 4.2 60 33-96 30-89 (110)
199 3sg6_A Gcamp2, myosin light ch 22.9 2.8E+02 0.0094 21.8 7.7 71 27-98 326-418 (450)
200 1r6b_X CLPA protein; AAA+, N-t 22.9 1E+02 0.0035 25.0 4.6 31 61-91 4-34 (758)
201 3pxi_A Negative regulator of g 22.4 91 0.0031 25.5 4.2 36 60-95 81-116 (758)
202 2x8a_A Nuclear valosin-contain 22.3 78 0.0027 22.5 3.4 16 79-94 249-264 (274)
203 3kz5_E Protein SOPB; partition 21.7 57 0.0019 18.5 2.0 20 45-64 30-49 (52)
204 1wdc_C Scallop myosin; calcium 21.1 1.5E+02 0.005 18.0 4.5 31 67-97 86-116 (156)
205 1baz_A ARC repressor; transcri 21.1 1.1E+02 0.0039 16.6 4.1 12 30-41 14-25 (53)
206 3agk_A Peptide chain release f 21.1 2.2E+02 0.0076 21.3 5.9 52 34-93 262-313 (373)
207 1wdc_B Scallop myosin; calcium 21.1 1.5E+02 0.0051 18.0 6.5 70 27-97 32-119 (156)
208 2joj_A Centrin protein; N-term 21.0 1.1E+02 0.0037 16.3 4.1 11 81-91 59-69 (77)
209 3a1y_A 50S ribosomal protein P 21.0 1.2E+02 0.0042 17.0 3.6 30 29-59 16-45 (58)
210 2lbf_B 60S acidic ribosomal pr 20.9 1E+02 0.0035 18.2 3.2 31 28-59 17-47 (70)
211 3on4_A Transcriptional regulat 20.9 96 0.0033 19.3 3.3 45 29-73 27-76 (191)
212 3au7_A TIAS, putative uncharac 20.7 34 0.0012 26.9 1.2 36 66-101 121-156 (402)
213 1w7p_D VPS36P, YLR417W; ESCRT- 20.7 1.3E+02 0.0045 24.7 4.7 37 59-95 404-468 (566)
214 2o3f_A Putative HTH-type trans 20.4 1.2E+02 0.0042 18.8 3.7 20 29-48 50-69 (111)
215 3j04_B Myosin regulatory light 20.2 1.5E+02 0.0051 17.6 5.0 71 26-97 20-108 (143)
216 4ei7_A Plasmid replication pro 20.2 64 0.0022 24.9 2.7 71 26-101 179-253 (389)
217 3cuq_B Vacuolar protein-sortin 20.2 2.3E+02 0.008 19.9 8.0 64 32-95 46-127 (218)
No 1
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=7.5e-44 Score=237.96 Aligned_cols=102 Identities=91% Similarity=1.395 Sum_probs=78.3
Q ss_pred CCCCCCCccCCCCCCcccchhhcccccCcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 034148 2 SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81 (103)
Q Consensus 2 ~~~~~~~~~~~~~g~kr~~k~~r~~~~~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkT 81 (103)
||+||||||+|++|.|||+|+++|++++||+++|+|||++.|+.|||++|+++|++++++|+++|++||+.||+|++|||
T Consensus 1 ~~~~~~~~g~~~~g~kr~~k~~r~~i~~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKT 80 (102)
T 1id3_B 1 SGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT 80 (102)
T ss_dssp -----------------------CCGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCCCCCCCCCccchHHHHHHhccCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHHhcCCcccccCC
Q 034148 82 VTAMDVVYALKRQGRTLYGFGG 103 (103)
Q Consensus 82 I~~~DV~~Alkr~g~~lYgf~~ 103 (103)
|+++||.+||+++++|+|||++
T Consensus 81 Vt~~DV~~ALkr~g~~lYGf~~ 102 (102)
T 1id3_B 81 VTSLDVVYALKRQGRTLYGFGG 102 (102)
T ss_dssp ECHHHHHHHHHHTTCCEESSCC
T ss_pred CcHHHHHHHHHHcCCCCCCCCC
Confidence 9999999999999999999986
No 2
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=100.00 E-value=1.7e-42 Score=231.37 Aligned_cols=103 Identities=98% Similarity=1.462 Sum_probs=82.2
Q ss_pred CCCCCCCCccCCCCCCcccchhhcccccCcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 034148 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80 (103)
Q Consensus 1 ~~~~~~~~~~~~~~g~kr~~k~~r~~~~~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~Rk 80 (103)
|||+||||||+|++|.|||+|++++++++||+++|+|||++.|+.|||++|+++|++++|+|+++|++||..||+|++||
T Consensus 1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRk 80 (103)
T 1tzy_D 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK 80 (103)
T ss_dssp --------------------CCCCCGGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCCCCCCccccccchhhhcccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHhcCCcccccCC
Q 034148 81 TVTAMDVVYALKRQGRTLYGFGG 103 (103)
Q Consensus 81 TI~~~DV~~Alkr~g~~lYgf~~ 103 (103)
||+++||.+||+++|+|+|||++
T Consensus 81 tIt~~DV~~Alr~~g~~lYGf~~ 103 (103)
T 1tzy_D 81 TVTAMDVVYALKRQGRTLYGFGG 103 (103)
T ss_dssp EECHHHHHHHHHHTTCEEESCCC
T ss_pred cCCHHHHHHHHHHcCCCCcCCCC
Confidence 99999999999999999999985
No 3
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=100.00 E-value=1.5e-42 Score=231.81 Aligned_cols=103 Identities=92% Similarity=1.403 Sum_probs=65.9
Q ss_pred CCCCCCCCccCCCCCCcccchhhcccccCcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 034148 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80 (103)
Q Consensus 1 ~~~~~~~~~~~~~~g~kr~~k~~r~~~~~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~Rk 80 (103)
|||+||||||+|++|.|||+|++++++++||+++|+|||++.|+.|||++|+++|++++|+|+++|++||..||+|++||
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRk 80 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRK 80 (103)
T ss_dssp -----------------------------CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHhcCCcccccCC
Q 034148 81 TVTAMDVVYALKRQGRTLYGFGG 103 (103)
Q Consensus 81 TI~~~DV~~Alkr~g~~lYgf~~ 103 (103)
||+++||.+||+++|+|+|||++
T Consensus 81 tvt~~DV~~Alr~~g~~lYGf~~ 103 (103)
T 2yfw_B 81 TVTSLDVVYALKRQGRTLYGFGG 103 (103)
T ss_dssp EECHHHHHHHHHHHC--------
T ss_pred cCcHHHHHHHHHHcCCCCcCCCC
Confidence 99999999999999999999985
No 4
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=100.00 E-value=6.5e-35 Score=188.42 Aligned_cols=84 Identities=96% Similarity=1.396 Sum_probs=81.2
Q ss_pred chhhcccccCcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCccc
Q 034148 20 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99 (103)
Q Consensus 20 ~k~~r~~~~~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~lY 99 (103)
||++++++++||+++|+|||+++|+.|||++++++|++++++|+++|++||+.||+|++||||+++||.+||+++|+|+|
T Consensus 1 ~~~~r~~~~~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 1 MKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp -CCGGGGCCSSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred CccccccCCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 034148 100 GFGG 103 (103)
Q Consensus 100 gf~~ 103 (103)
||++
T Consensus 81 gf~~ 84 (84)
T 2hue_C 81 GFGG 84 (84)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 9985
No 5
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-25 Score=167.76 Aligned_cols=90 Identities=68% Similarity=0.988 Sum_probs=83.0
Q ss_pred cCCCCCCcccchhhcccccCcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHH
Q 034148 10 GLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVY 89 (103)
Q Consensus 10 ~~~~~g~kr~~k~~r~~~~~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~ 89 (103)
+..+...+++.++++|.+. |+ +.||||++|++|||+++|++++++++.|+++|++||+.||+||+|||||++||.+
T Consensus 146 ~~~~~~~~r~~~vLrD~i~-i~---~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ 221 (235)
T 2l5a_A 146 NSTKDKRTKYTSVLRDIID-IS---DEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVY 221 (235)
T ss_dssp CGGGCCSSTHHHHHHHHHH-HT---CCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHH
T ss_pred CCCCccchhHHHHHHHhhc-cc---HHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHH
Confidence 3344556899999999996 43 6799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccccCC
Q 034148 90 ALKRQGRTLYGFGG 103 (103)
Q Consensus 90 Alkr~g~~lYgf~~ 103 (103)
||+++|.|+|||++
T Consensus 222 ALKr~gr~lYGf~~ 235 (235)
T 2l5a_A 222 ALKRQGRTLYGFGG 235 (235)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHhcCCccccCCC
Confidence 99999999999984
No 6
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.7e-23 Score=143.08 Aligned_cols=64 Identities=81% Similarity=1.210 Sum_probs=62.2
Q ss_pred HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCcccccCC
Q 034148 40 RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103 (103)
Q Consensus 40 r~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~lYgf~~ 103 (103)
+++|++|||+++|++++++++.|+++|++||+.|++|++|||||++||.+||+++|.|+|||++
T Consensus 58 ~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~lygf~~ 121 (121)
T 2ly8_A 58 VPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 121 (121)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGGGCCC
T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCCCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999999974
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.88 E-value=9.3e-23 Score=137.56 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=66.1
Q ss_pred ccCcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCccc
Q 034148 27 IQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~lY 99 (103)
++.||+++|+||+++.|..+||++++++|++++++|+++|+.||+.||+|++||||+++||.+||+++|+..|
T Consensus 5 d~~lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~ 77 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTD 77 (111)
T ss_dssp -----CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBT
T ss_pred CCCCCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccc
Confidence 4589999999999999999999999999999999999999999999999999999999999999999997654
No 8
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.88 E-value=1.3e-22 Score=126.31 Aligned_cols=65 Identities=28% Similarity=0.422 Sum_probs=63.4
Q ss_pred cCcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 28 QGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 28 ~~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
..||+++|+||+|+.|+.|||++++.+|+++++.|+.+|++||+.||+|+|||||+++||.+|++
T Consensus 5 ~~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 5 GELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred ccCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999985
No 9
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.86 E-value=1.5e-21 Score=122.28 Aligned_cols=66 Identities=24% Similarity=0.367 Sum_probs=63.9
Q ss_pred ccCcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 27 IQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
...||.+||++|+++.|+.++|+||...|.+.+|+++.+|+++|.+|++|++|+|++++||.+||+
T Consensus 4 ~s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 347999999999999999999999999999999999999999999999999999999999999996
No 10
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.83 E-value=2e-20 Score=115.51 Aligned_cols=66 Identities=29% Similarity=0.335 Sum_probs=64.0
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.||+++|+||+++.+..+||++|+..|++++|+|+..|++||+.+|+|++||||+++||.+|++.+
T Consensus 2 ~lP~a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999999999999999999999864
No 11
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.82 E-value=5.4e-20 Score=130.27 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=68.2
Q ss_pred CcchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCccc
Q 034148 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99 (103)
Q Consensus 29 ~ip~a~IkRiar~~-G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~lY 99 (103)
.||+++|.||+|++ |..|||.+|+++|++++++|+..|+.+|+.+|+|+|||||+++||.+||..+|+.-|
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v 75 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGV 75 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTS
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccC
Confidence 69999999999999 999999999999999999999999999999999999999999999999999887544
No 12
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.81 E-value=6.4e-20 Score=129.86 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=64.7
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.||+++|.||+|++|..|||++|+++|++++++|+.+|+.+|+.+|+|++||||+++||.+||+++
T Consensus 82 ~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 82 LFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp CCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 799999999999999999999999999999999999999999999999999999999999999875
No 13
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.80 E-value=3.3e-19 Score=116.26 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=68.9
Q ss_pred cccccCcchHHHHHHHHhcCc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCccc
Q 034148 24 RDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99 (103)
Q Consensus 24 r~~~~~ip~a~IkRiar~~G~--~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~lY 99 (103)
++....||+++|+||++..+. .+||+||...++++++.|+..|+.+|..+|+|++||||+.+||.+|++.+|+.-|
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~ 80 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSY 80 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGG
T ss_pred CcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhh
Confidence 456678999999999999975 8999999999999999999999999999999999999999999999999988654
No 14
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.74 E-value=4.9e-18 Score=112.70 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=60.5
Q ss_pred CcccchhhcccccCcchHHHHHHHHhcC--------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHH
Q 034148 16 AKRHRKVLRDNIQGITKPAIRRLARRGG--------VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV 87 (103)
Q Consensus 16 ~kr~~k~~r~~~~~ip~a~IkRiar~~G--------~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV 87 (103)
.+--+++|+++...||+.|+.||++.++ ..||+++|..+|++++|.|+..+++|++.||.|++|+||++.||
T Consensus 14 lrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDi 93 (100)
T 2yfv_A 14 LAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDM 93 (100)
T ss_dssp --------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH
Confidence 3566889999999999999999999987 67999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 034148 88 VYALK 92 (103)
Q Consensus 88 ~~Alk 92 (103)
.+|.+
T Consensus 94 qLa~r 98 (100)
T 2yfv_A 94 QLARR 98 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 15
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.74 E-value=1.4e-17 Score=105.95 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=66.2
Q ss_pred CcchHHHHHHHHhc-----CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 29 GITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 29 ~ip~a~IkRiar~~-----G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
.||+.|+.||+|.+ +..||+++|..+|++++|.|+..+++|++.+|.|++|+||+++||.+|.+..|+.
T Consensus 3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~ 76 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 76 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcC
Confidence 69999999999999 8899999999999999999999999999999999999999999999999987764
No 16
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=99.73 E-value=1.3e-17 Score=115.95 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=73.8
Q ss_pred chhhcccccCcchHHHHHHHHhc-----CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 20 RKVLRDNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 20 ~k~~r~~~~~ip~a~IkRiar~~-----G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+++|+++...||+.|+.||++.+ +..||+++|+.+|++++|.|+..+++|++.||.|++|+||+++||.+|.+..
T Consensus 53 r~yQkst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rir 132 (136)
T 1tzy_C 53 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
T ss_dssp HHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHhhcchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHh
Confidence 57888999999999999999998 7899999999999999999999999999999999999999999999999887
Q ss_pred CCc
Q 034148 95 GRT 97 (103)
Q Consensus 95 g~~ 97 (103)
|+.
T Consensus 133 g~~ 135 (136)
T 1tzy_C 133 GER 135 (136)
T ss_dssp TCC
T ss_pred CcC
Confidence 763
No 17
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.73 E-value=8.5e-18 Score=117.24 Aligned_cols=81 Identities=27% Similarity=0.200 Sum_probs=66.5
Q ss_pred CcccchhhcccccCcchHHHHHHHHhcC-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHH
Q 034148 16 AKRHRKVLRDNIQGITKPAIRRLARRGG-------VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVV 88 (103)
Q Consensus 16 ~kr~~k~~r~~~~~ip~a~IkRiar~~G-------~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~ 88 (103)
.+--+++|+++...||+.|+.||++.++ ..||+++|+.+|++++|.|+.++++|++.||.||+|+||+++||.
T Consensus 48 LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiq 127 (140)
T 3nqu_A 48 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 127 (140)
T ss_dssp -----------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 3344688999999999999999999987 579999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 034148 89 YALKRQGR 96 (103)
Q Consensus 89 ~Alkr~g~ 96 (103)
+|++..|.
T Consensus 128 LArrirg~ 135 (140)
T 3nqu_A 128 LARRIRGL 135 (140)
T ss_dssp HHHHHHC-
T ss_pred HHHHhccc
Confidence 99987775
No 18
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.73 E-value=1.5e-17 Score=103.55 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 33 PAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 33 a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.+|.+|++++|++++|+++..+|.++++.|..+|++||..||+||||+||+.+||.+|++..
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 36899999999999999999999999999999999999999999999999999999999853
No 19
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.72 E-value=8.2e-18 Score=118.93 Aligned_cols=81 Identities=27% Similarity=0.200 Sum_probs=66.5
Q ss_pred CcccchhhcccccCcchHHHHHHHHhcC-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHH
Q 034148 16 AKRHRKVLRDNIQGITKPAIRRLARRGG-------VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVV 88 (103)
Q Consensus 16 ~kr~~k~~r~~~~~ip~a~IkRiar~~G-------~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~ 88 (103)
.+--+++|+.+...||++|+.||++.++ ..||+++|+.+|++++|.|+..+++||+.||.||+|+||+++||.
T Consensus 64 LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIq 143 (156)
T 3r45_A 64 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 143 (156)
T ss_dssp -----------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 3445688999999999999999999987 479999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 034148 89 YALKRQGR 96 (103)
Q Consensus 89 ~Alkr~g~ 96 (103)
+|++..|+
T Consensus 144 LArrIrg~ 151 (156)
T 3r45_A 144 LARRIRGL 151 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHccc
Confidence 99987664
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=104.97 Aligned_cols=69 Identities=28% Similarity=0.194 Sum_probs=64.2
Q ss_pred CcchHHHHHHHHhcC-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 29 GITKPAIRRLARRGG-------VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 29 ~ip~a~IkRiar~~G-------~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
.||+.|+.|++|.++ ..||+++|..+|++++|.|+..+++|++.||.|++|+||+++||.+|.+..|+.
T Consensus 3 LI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 3 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 689999999999987 579999999999999999999999999999999999999999999999987753
No 21
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.67 E-value=1.9e-16 Score=109.18 Aligned_cols=87 Identities=23% Similarity=0.356 Sum_probs=65.6
Q ss_pred CCCCCC-CCccCCCCCCcccchhhcccccCcchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 034148 1 MSGRGK-GGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78 (103)
Q Consensus 1 ~~~~~~-~~~~~~~~g~kr~~k~~r~~~~~ip~a~IkRiar~~-G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~ 78 (103)
|||+|| ||++.++. .-+..|..+ .||.+.|+|+++.. +..||+++|...|..++|+++.+|++.|...|+|++
T Consensus 1 m~~~~~~~~~~~~~~----~srS~ragL-qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k 75 (129)
T 1tzy_A 1 MSGRGKQGGKARAKA----KSRSSRAGL-QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 75 (129)
T ss_dssp -------------CC----CCHHHHHTC-SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCC----CCccccCce-eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 898887 44332222 222223344 89999999999996 889999999999999999999999999999999999
Q ss_pred CceecHHHHHHHHH
Q 034148 79 RKTVTAMDVVYALK 92 (103)
Q Consensus 79 RkTI~~~DV~~Alk 92 (103)
|++|+++||.+|++
T Consensus 76 ~krItp~hi~lAI~ 89 (129)
T 1tzy_A 76 KTRIIPRHLQLAIR 89 (129)
T ss_dssp CSEECHHHHHHHHH
T ss_pred CCeEcHHHHHHHHh
Confidence 99999999999996
No 22
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.67 E-value=2.3e-16 Score=108.00 Aligned_cols=86 Identities=24% Similarity=0.351 Sum_probs=65.6
Q ss_pred CCCCCCCccCCCCCCcccchhhcccccCcchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 034148 2 SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80 (103)
Q Consensus 2 ~~~~~~~~~~~~~g~kr~~k~~r~~~~~ip~a~IkRiar~~-G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~Rk 80 (103)
||+|||||...+.-.++ .|..+ .||.+.|+|++++. +..||+++|...|..++|+++.+|++.|...|+|++|+
T Consensus 1 ~~~~~~~~~~~~~~s~s----~ragL-~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k 75 (123)
T 2nqb_C 1 SGRGKGGKVKGKAKSRS----NRAGL-QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 75 (123)
T ss_dssp ------------CCCHH----HHHTC-SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCCCCCCcc----ccCCe-eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 57788666443332222 23344 89999999999997 88999999999999999999999999999999999999
Q ss_pred eecHHHHHHHHH
Q 034148 81 TVTAMDVVYALK 92 (103)
Q Consensus 81 TI~~~DV~~Alk 92 (103)
+|+++||.+|++
T Consensus 76 rItp~hi~lAI~ 87 (123)
T 2nqb_C 76 RIIPRHLQLAIR 87 (123)
T ss_dssp EECHHHHHHHHH
T ss_pred cccHHHHHHHHh
Confidence 999999999996
No 23
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.66 E-value=2.7e-16 Score=99.21 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=62.6
Q ss_pred cCcchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 28 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 28 ~~ip~a~IkRiar~~-G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+.||.++|.||++.. +..+||.||.+.+.+++++|+..|+.+|...|+|++||||+++||..|++..
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 479999999999955 6789999999999999999999999999999999999999999999999864
No 24
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.66 E-value=3.9e-16 Score=112.73 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=70.3
Q ss_pred cccccCcchHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCccc
Q 034148 24 RDNIQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99 (103)
Q Consensus 24 r~~~~~ip~a~IkRiar~~G~-~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~lY 99 (103)
.+.+..||+++|.||++..+. .+||.|+.+.|+++++.|+..|+.+|+..|.|++||||+++||..||+.+|+.-|
T Consensus 10 ~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~f 86 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSY 86 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGG
T ss_pred chhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHH
Confidence 345568999999999999985 8999999999999999999999999999999999999999999999999998755
No 25
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.64 E-value=6.7e-16 Score=108.69 Aligned_cols=88 Identities=22% Similarity=0.316 Sum_probs=66.0
Q ss_pred CCCCCCC-CccCCCCCCcccchhhcccccCcchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 034148 1 MSGRGKG-GKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78 (103)
Q Consensus 1 ~~~~~~~-~~~~~~~g~kr~~k~~r~~~~~ip~a~IkRiar~~-G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~ 78 (103)
|||+||+ ||+.+ +..-+..|..+ .||.+.|.|+++.. ++.||+++|...|..++|+++.+|++.|...|+|++
T Consensus 20 ~~~~~~~~~~~~~----k~~srS~ragL-qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~k 94 (149)
T 2f8n_K 20 MSGRGKQGGKARA----KAKTRSSRAGL-QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 94 (149)
T ss_dssp ------------------CCCHHHHHTC-SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCCCCCCCC----CCCCccccCCe-eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7888875 32222 22222223444 89999999999997 889999999999999999999999999999999999
Q ss_pred CceecHHHHHHHHHh
Q 034148 79 RKTVTAMDVVYALKR 93 (103)
Q Consensus 79 RkTI~~~DV~~Alkr 93 (103)
|++|+++||.+|++.
T Consensus 95 rkrItprhI~lAI~n 109 (149)
T 2f8n_K 95 KTRIIPRHLQLAIRN 109 (149)
T ss_dssp CSEECHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHhc
Confidence 999999999999973
No 26
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=99.62 E-value=6.4e-16 Score=103.58 Aligned_cols=62 Identities=23% Similarity=0.199 Sum_probs=58.9
Q ss_pred HHHHHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcC
Q 034148 34 AIRRLARRGGV---KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 95 (103)
Q Consensus 34 ~IkRiar~~G~---~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g 95 (103)
+|.||+++.|. .++|++++.+|.+.+++|+.+|+.||..||+|||||||+++||.+|++++.
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~ 88 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSN 88 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCH
Confidence 58899999987 799999999999999999999999999999999999999999999998864
No 27
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=99.62 E-value=6.3e-16 Score=104.44 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=59.1
Q ss_pred HHHHHHHhcCccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcC
Q 034148 34 AIRRLARRGGVKR---ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 95 (103)
Q Consensus 34 ~IkRiar~~G~~r---iS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g 95 (103)
+|.||+++.|..+ +|++++.+|.+.+++|+.+|+.|+..||+|||||||+++||.++++++.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~ 96 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSN 96 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCH
Confidence 6889999999877 9999999999999999999999999999999999999999999998763
No 28
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.61 E-value=2.4e-15 Score=102.52 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=64.2
Q ss_pred cccccCcchHHHHHHHHhcC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 24 RDNIQGITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 24 r~~~~~ip~a~IkRiar~~G-~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
|..+ .||.+.|+|++++.+ ..||+++|...|..++|+++.+|++.|...|+|++|++|+++||.+|++
T Consensus 18 ragL-qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 18 KAGV-IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp HHTC-SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccCc-cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4444 899999999999998 7999999999999999999999999999999999999999999999996
No 29
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.61 E-value=2.7e-15 Score=103.16 Aligned_cols=75 Identities=16% Similarity=0.153 Sum_probs=65.1
Q ss_pred ccccCcchHHHHHHHHhcC--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCccc
Q 034148 25 DNIQGITKPAIRRLARRGG--VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99 (103)
Q Consensus 25 ~~~~~ip~a~IkRiar~~G--~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~lY 99 (103)
.....||.++|+||++..+ ..+||.||...|+++++.|+..|+.+|..+|+|++||||+.+||..||+.+++.-|
T Consensus 5 ~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~f 81 (128)
T 2byk_B 5 IEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESF 81 (128)
T ss_dssp ------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTT
T ss_pred cccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHH
Confidence 3456899999999999765 68999999999999999999999999999999999999999999999999987533
No 30
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.57 E-value=9.3e-15 Score=100.57 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=66.1
Q ss_pred CCCCCCCCccCCCCCCcccchhhcccccCcchHHHHHHHHhcC-c-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 034148 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGG-V-KRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78 (103)
Q Consensus 1 ~~~~~~~~~~~~~~g~kr~~k~~r~~~~~ip~a~IkRiar~~G-~-~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~ 78 (103)
||| ||+|++.++...++.-+..|..+ .||.+.|+|+++..+ . .||+++|...|..++|++..+|++.|..+|+|.+
T Consensus 1 m~~-~~~~~~~~~~~~~~~srS~ragL-qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k 78 (128)
T 1f66_C 1 MAG-GKAGKDSGKAKTKAVSRSQRAGL-QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 78 (128)
T ss_dssp -----------------CCCHHHHHTC-SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCC-CCCCCCCCCcCCCCcCccccCCc-cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 453 56666655544333333334444 899999999999988 4 5999999999999999999999999999999999
Q ss_pred CceecHHHHHHHHHh
Q 034148 79 RKTVTAMDVVYALKR 93 (103)
Q Consensus 79 RkTI~~~DV~~Alkr 93 (103)
+++|+++||.+|++.
T Consensus 79 ~krItprhi~lAI~n 93 (128)
T 1f66_C 79 VKRITPRHLQLAIRG 93 (128)
T ss_dssp CSEECHHHHHHHHHH
T ss_pred CCeEcHHHHHHHHhc
Confidence 999999999999963
No 31
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.57 E-value=1e-14 Score=100.68 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=62.3
Q ss_pred CcchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 29 ~ip~a~IkRiar~~-G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
.||.+.|+|+++.. ++.||+++|...|..++|+++.+|++.|...|+|.+|++|+++||.+|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 89999999999996 78999999999999999999999999999999999999999999999996
No 32
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3e-14 Score=92.87 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=53.2
Q ss_pred HHHHHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 34 AIRRLARRGGV---KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 34 ~IkRiar~~G~---~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+|-+|+..... ..+|++++.+|.+.+++|+.+|+.|+..||+|||||||+++||.++++++
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 35555555422 35999999999999999999999999999999999999999999999875
No 33
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=99.50 E-value=4e-14 Score=98.57 Aligned_cols=62 Identities=24% Similarity=0.220 Sum_probs=55.8
Q ss_pred HHHHHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcC
Q 034148 34 AIRRLARRGGV---KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 95 (103)
Q Consensus 34 ~IkRiar~~G~---~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g 95 (103)
+|-+|++..+. ..||++++.+|.+.+++|+.+|+.|+..||+||||+||+++||.++++++.
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~ 88 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSN 88 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCH
Confidence 46677777654 359999999999999999999999999999999999999999999998864
No 34
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.44 E-value=6.9e-13 Score=86.97 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=62.4
Q ss_pred cccCcchHHHHHHHHhcC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcC
Q 034148 26 NIQGITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 95 (103)
Q Consensus 26 ~~~~ip~a~IkRiar~~G-~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g 95 (103)
....||.+.|+||++..+ +.+||.+|...+.+++|.|+.+++++|..+|++++||||+.+||.+|++...
T Consensus 16 ~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e 86 (97)
T 1n1j_B 16 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFD 86 (97)
T ss_dssp ----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred CCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCc
Confidence 345799999999999986 4899999999999999999999999999999999999999999999997543
No 35
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.31 E-value=1.5e-11 Score=83.36 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=62.9
Q ss_pred ccCcchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 27 IQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~-G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.+.||.+.|+||++.. .+.+||.+|...+..++|+|+.+|+..|...|+..+||||+.+||..|++..
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~ 107 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKS 107 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcC
Confidence 3479999999999864 4789999999999999999999999999999999999999999999999653
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.30 E-value=3.6e-12 Score=83.76 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=59.0
Q ss_pred ccCcchHHHHHHHHhcC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 27 IQGITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~G-~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
...||.+.|+||++..+ +.+||.+|...+..++|+|+.+|++.|..+|++.+|+||+.+||.+|++.
T Consensus 9 ~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp -CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred CCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 44899999999999876 48999999999999999999999999999999999999999999999864
No 37
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.18 E-value=3.4e-11 Score=89.85 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=63.7
Q ss_pred CcchHHHHHHHHhcC--------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCcc
Q 034148 29 GITKPAIRRLARRGG--------VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 98 (103)
Q Consensus 29 ~ip~a~IkRiar~~G--------~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~l 98 (103)
.||+.|+.|++|... .-|+.++|+.+|+++.|.|+..+++|++.||.||+|.||.+.|+.+|.+..|+..
T Consensus 11 lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~~ 88 (235)
T 2l5a_A 11 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFL 88 (235)
T ss_dssp CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSCC
T ss_pred cccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhccC
Confidence 799999999887763 3599999999999999999999999999999999999999999999998777643
No 38
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.12 E-value=2.2e-10 Score=83.03 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=61.4
Q ss_pred CcchHHHHHHHHhc-Cc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 29 GITKPAIRRLARRG-GV-KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 29 ~ip~a~IkRiar~~-G~-~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
.||.+.|+|++++. +. .||+++|...|..++|+++.+|++.|...|+|++|++|+++||.+|++
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 89999999999997 55 699999999999999999999999999999999999999999999996
No 39
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.09 E-value=1.8e-10 Score=80.14 Aligned_cols=69 Identities=7% Similarity=0.063 Sum_probs=52.3
Q ss_pred cccCcchHHHHHHHHhcC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCceecHHHHHHHHHhc
Q 034148 26 NIQGITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYT-EHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 26 ~~~~ip~a~IkRiar~~G-~~riS~da~~~l~~~~e~~~~~I~~dA~~~a-~ha~RkTI~~~DV~~Alkr~ 94 (103)
....||.+.|+||++..- +.+||.+|...+..++|.|+..|+..|..+| +..+||||+.+||..|+...
T Consensus 16 ~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp -------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 445899999999998863 5899999999999999999999999999999 99999999999999999753
No 40
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.88 E-value=9.9e-09 Score=70.23 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 33 PAIRRLARRGGVK-RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 33 a~IkRiar~~G~~-riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
..|.++++.+... .||.++...|..+++++++.|+.+|..++.|++|+||+..||..|.+.+
T Consensus 40 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 40 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3699999999875 8999999999999999999999999999999999999999999999754
No 41
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.84 E-value=1.5e-08 Score=69.02 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 33 PAIRRLARRGGVK-RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 33 a~IkRiar~~G~~-riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
..|.++++.+... .||.++...|..+++++++.|+.+|..++.|++|+||+.+||..|.+.+
T Consensus 37 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 5689999999875 8999999999999999999999999999999999999999999999754
No 42
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=98.71 E-value=3.7e-09 Score=52.70 Aligned_cols=23 Identities=91% Similarity=1.421 Sum_probs=21.3
Q ss_pred CCCCCCCCccCCCCCCcccchhh
Q 034148 1 MSGRGKGGKGLGKGGAKRHRKVL 23 (103)
Q Consensus 1 ~~~~~~~~~~~~~~g~kr~~k~~ 23 (103)
.|||||||||+|++|.|||+|+.
T Consensus 1 ~sgrgkggkglgkggakrhrkv~ 23 (26)
T 4gqb_C 1 XSGRGKGGKGLGKGGAKRHRKVX 23 (26)
T ss_pred CCCCCcCCcccCccchhhhcccc
Confidence 48999999999999999999975
No 43
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.60 E-value=4.5e-07 Score=57.15 Aligned_cols=67 Identities=24% Similarity=0.306 Sum_probs=62.8
Q ss_pred cCcchHHHHHHHHhcC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 28 QGITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 28 ~~ip~a~IkRiar~~G-~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+.|++..++.+++... -..+.+++-+.|.+..++|+..++..|...|+|-+-.||...||.+.|+|+
T Consensus 4 ~vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CSSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 4689999999999985 488999999999999999999999999999999999999999999999986
No 44
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.42 E-value=9.9e-07 Score=63.76 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 33 PAIRRLARRGGV-KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 33 a~IkRiar~~G~-~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
..|.|+++.... ..||.+++..|..++.++++.|+.+|..++.+.+|+|+|..||..|++.
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 358899999886 7899999999999999999999999999999999999999999999974
No 45
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=9.2e-07 Score=60.13 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=45.9
Q ss_pred CcchHHHHHHHHhcC--------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 034148 29 GITKPAIRRLARRGG--------VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 80 (103)
Q Consensus 29 ~ip~a~IkRiar~~G--------~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~Rk 80 (103)
.||+.|+.|++|... .-|++++|+.+|+++.|.|+..+++|++.||.|+.|-
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~g 60 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCcc
Confidence 489999999887642 4699999999999999999999999999999999553
No 46
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.97 E-value=6.9e-05 Score=47.89 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=58.7
Q ss_pred ccccCcchHHHHHHHHhcC---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 034148 25 DNIQGITKPAIRRLARRGG---VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYAL 91 (103)
Q Consensus 25 ~~~~~ip~a~IkRiar~~G---~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Al 91 (103)
.+...||+..|.||++..= -+|||+||...+.+.++-|+.+.+..|+..++..+-.+|+.+|++..+
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 4566899999999998542 489999999999999999999999999999998888899999999866
No 47
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.90 E-value=0.00012 Score=46.46 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=58.8
Q ss_pred cccCcchHHHHHHHHhcC---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 034148 26 NIQGITKPAIRRLARRGG---VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYAL 91 (103)
Q Consensus 26 ~~~~ip~a~IkRiar~~G---~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Al 91 (103)
....||...|.+|++..= ..||++||...+.+.++-|+.+.+..|+.-++..+-..|+.+|++..+
T Consensus 5 ~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~ 73 (81)
T 3b0b_C 5 REGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVL 73 (81)
T ss_dssp --CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHH
Confidence 456899999999998752 589999999999999999999999999999988888899999999865
No 48
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.68 E-value=0.00033 Score=45.02 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=60.5
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-ceecHHHHHHHHHhc
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARR-KTVTAMDVVYALKRQ 94 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~R-kTI~~~DV~~Alkr~ 94 (103)
.||++.|+||+....-..+|+++...|.-....|+.+|++.|...++..+- .-|.+.+|..|.+++
T Consensus 16 ~f~k~~vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 16 AFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp CCCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 699999999999887788999999999999999999999999999987654 479999999999875
No 49
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.04 E-value=0.0021 Score=55.81 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=60.3
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
.+|..-|+|+++..-..||+..|...|..++|+...+|++-|..+|+..+++.|+++||.+|++.
T Consensus 104 ~~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 104 SLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred cccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 69999999999444468999999999999999999999999999999999999999999999964
No 50
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.011 Score=37.92 Aligned_cols=62 Identities=11% Similarity=0.220 Sum_probs=48.7
Q ss_pred cchHHHHHHHHhcC---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------CceecHHHHHHHH
Q 034148 30 ITKPAIRRLARRGG---VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR-------RKTVTAMDVVYAL 91 (103)
Q Consensus 30 ip~a~IkRiar~~G---~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~-------RkTI~~~DV~~Al 91 (103)
||+..|-||+...- -+||+.||...++++++-|+.+.+-.|..-.+..+ ..+++.+|++...
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkia 73 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIV 73 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHH
Confidence 79999999998542 58999999999999999999999888876665422 2478889987653
No 51
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.78 E-value=0.014 Score=36.43 Aligned_cols=42 Identities=10% Similarity=0.199 Sum_probs=35.8
Q ss_pred HHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034148 35 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEH 76 (103)
Q Consensus 35 IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~h 76 (103)
|..|+.+.|++.+++|++..+.-+.++++..+++..+..++|
T Consensus 12 i~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~ 53 (75)
T 1h3o_A 12 ILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQ 53 (75)
T ss_dssp HHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 556888999999999999999999999999999999999987
No 52
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=94.18 E-value=0.13 Score=35.78 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=54.0
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHH
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV 87 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV 87 (103)
.++.+-++++.|.++--.|.++=.+.+.++++.-+.+++.-|...|...||-+|...|+
T Consensus 2 vm~~~~~e~lFR~aa~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 36788899999998766788999999999999999999999999999999999998885
No 53
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.04 E-value=0.3 Score=36.01 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=51.1
Q ss_pred CcchHHHHHHHHh----cCccccchHHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 29 GITKPAIRRLARR----GGVKRISGLIYEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 29 ~ip~a~IkRiar~----~G~~riS~da~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
.++...+..|++. .+. .+++++++.+.+... ..+..+++.|..+|...++.+|+.+||..|++.
T Consensus 258 ~~~~~e~~~il~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4455556666653 343 599999999998876 477889999999998899999999999999975
No 54
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=93.20 E-value=0.17 Score=30.23 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 52 YEETRGVLKIF----LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 52 ~~~l~~~~e~~----~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
++.|.+..+-| +..++.+|...|-..++..|+.+|+..|+++.
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 55666555544 77888899999999999999999999999864
No 55
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=92.18 E-value=0.19 Score=35.63 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=54.9
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHH
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV 87 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV 87 (103)
.++.+-++++.|.++--.|.++=.+.+.++++.-+.+++.-|..-|...+|-+|...|+
T Consensus 26 vmg~~kferlFR~aagLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 67999999999998766789999999999999999999999999999999999998885
No 56
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.17 E-value=0.71 Score=37.34 Aligned_cols=50 Identities=22% Similarity=0.140 Sum_probs=43.5
Q ss_pred ccccchHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 44 VKRISGLIYEETRGVL-------------KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 44 ~~riS~da~~~l~~~~-------------e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
...++++++..|.+.. ...+..+++.|..+|...++..|+.+||..|+++
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3579999999998865 4567789999999999999999999999999975
No 57
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=92.16 E-value=0.3 Score=29.53 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 63 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 63 ~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+..++++|...|-..++..|+.+|+..|+++.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 44566678888888889999999999999875
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.04 E-value=1 Score=32.78 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=52.2
Q ss_pred CcchHHHHHHHHhc-----CccccchHHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 29 GITKPAIRRLARRG-----GVKRISGLIYEETRGVLK------IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 29 ~ip~a~IkRiar~~-----G~~riS~da~~~l~~~~e------~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.++...+..|++.. ....+++++.+.+.+... .++..+++.|..+|...++.+|+.+||..|+...
T Consensus 200 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 200 PYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 44455666666543 235689999999998887 6777899999999998899999999999998754
No 59
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.70 E-value=0.56 Score=31.83 Aligned_cols=51 Identities=12% Similarity=-0.013 Sum_probs=37.5
Q ss_pred HhcCccccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 40 RRGGVKRISGLIYEETRGVLK---IFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 40 r~~G~~riS~da~~~l~~~~e---~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
+..|. .+++++.+.+.+... ..+..+++.+..++...+ ++|+.+||..+++
T Consensus 188 ~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 188 AMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 33454 589999999988765 355666777777776555 4699999999884
No 60
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=91.48 E-value=0.36 Score=29.80 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 63 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 63 ~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+..++++|...|-...+..|+.+|+..|+++.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 56677888888888889999999999999864
No 61
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.64 E-value=0.91 Score=33.01 Aligned_cols=48 Identities=6% Similarity=-0.080 Sum_probs=41.0
Q ss_pred ccchHHHHHHHHHHHH-------HHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 46 RISGLIYEETRGVLKI-------FLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 46 riS~da~~~l~~~~e~-------~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
.+|+++.+.|.+.... .+..+++.|..+|.-.++.+|+.+||..|+..
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 7999999999887653 56778888888998899999999999998874
No 62
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=90.56 E-value=0.35 Score=29.79 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 63 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 63 ~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+..++.+|...|-+.++..|+.+|+..|+++.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 66777888888888899999999999999965
No 63
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=90.04 E-value=0.4 Score=28.81 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 63 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 63 ~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+..++++|...|-..++..|+.+|+..|+++.
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 55677788888988889999999999999875
No 64
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.76 E-value=0.97 Score=29.87 Aligned_cols=61 Identities=15% Similarity=0.037 Sum_probs=41.9
Q ss_pred CcchHHHHHHHHh----cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 29 GITKPAIRRLARR----GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 29 ~ip~a~IkRiar~----~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
.++...+..+++. .|. .+++++.+.+.+...--+..+...+...+..+ .+|+.+||..++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4455555555543 354 48999999988876656666665555555555 6899999999885
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.26 E-value=1.5 Score=32.54 Aligned_cols=66 Identities=8% Similarity=0.010 Sum_probs=45.9
Q ss_pred cchHHHHHHHH----hcCccccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCC
Q 034148 30 ITKPAIRRLAR----RGGVKRISGLIYEETRGVLK---IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
Q Consensus 30 ip~a~IkRiar----~~G~~riS~da~~~l~~~~e---~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~ 96 (103)
.+...+..|++ ..++ .++++++..+.+... ..+..+++.+..+|.-.++..|+.++|..|+.....
T Consensus 180 ~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~ 252 (334)
T 1in4_A 180 YTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252 (334)
T ss_dssp CCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCC
Confidence 34444444443 3454 488999888876532 345567777778887778888999999999987653
No 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.62 E-value=4.1 Score=29.48 Aligned_cols=67 Identities=7% Similarity=-0.004 Sum_probs=50.4
Q ss_pred cCcchHHHHHHHHh----cC-ccccchHHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 28 QGITKPAIRRLARR----GG-VKRISGLIYEETRGVLK------IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 28 ~~ip~a~IkRiar~----~G-~~riS~da~~~l~~~~e------~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
..++...+..+++. .+ ...+++++.+.+.+... .++.++++.+...+...++.+|+.+||..|+...
T Consensus 195 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 195 PPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 34556666666654 22 35689999999888776 3466788888888888888999999999888653
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.34 E-value=2.5 Score=30.87 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHhcC-----ccccchHHHHHHHHHH------------HHHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 034148 29 GITKPAIRRLARRGG-----VKRISGLIYEETRGVL------------KIFLENVIRDAVTYTEHARRKTVTAMDVVYAL 91 (103)
Q Consensus 29 ~ip~a~IkRiar~~G-----~~riS~da~~~l~~~~------------e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Al 91 (103)
.++...+..+++..- ...+++++++.+.+.. -.++.++++.|...|...+..+|+.+||..++
T Consensus 192 pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~ 271 (389)
T 1fnn_A 192 PYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSS 271 (389)
T ss_dssp CCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 455555666664431 2368999999999888 35578888999999988899999999999998
Q ss_pred Hhc
Q 034148 92 KRQ 94 (103)
Q Consensus 92 kr~ 94 (103)
...
T Consensus 272 ~~~ 274 (389)
T 1fnn_A 272 KEV 274 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 68
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=87.66 E-value=0.8 Score=33.77 Aligned_cols=59 Identities=8% Similarity=-0.077 Sum_probs=45.1
Q ss_pred HHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 35 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 35 IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
|++++++.|+ .+++++.+.|.+.++-=+..+..+..+++-..+..+||.+||...+-..
T Consensus 151 l~~~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 151 VAARAKQLNL-ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHTTC-EECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 3466666676 5999999999998877777777777777665555689999998877654
No 69
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.17 E-value=4.2 Score=29.52 Aligned_cols=48 Identities=17% Similarity=-0.029 Sum_probs=36.9
Q ss_pred ccchHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 46 RISGLIYEETRGVLK-----------------------IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 46 riS~da~~~l~~~~e-----------------------~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
.+++++.+.+.+... .-+..+++-|..+|...+|..|+.+||..++..
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 478888888776553 223456777788888899999999999998874
No 70
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=85.69 E-value=4.5 Score=26.42 Aligned_cols=35 Identities=3% Similarity=0.128 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 60 KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 60 e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
..-+..+++.|...|+..+...|+++++.+||=..
T Consensus 83 s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~ 117 (145)
T 3fes_A 83 SPRSKQILELSGMFANKLKTNYIGTEHILLAIIQE 117 (145)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhC
Confidence 34567889999999999999999999999998543
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.48 E-value=4.4 Score=29.63 Aligned_cols=65 Identities=9% Similarity=-0.002 Sum_probs=48.2
Q ss_pred cCcchHHHHHHHHhc---C--ccccchHHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 28 QGITKPAIRRLARRG---G--VKRISGLIYEETRGVLK------IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 28 ~~ip~a~IkRiar~~---G--~~riS~da~~~l~~~~e------~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
..++...+..|++.. + ...+++++.+.+.+... .++.++++.|..+|. +..+|+.+||..++...
T Consensus 195 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 195 KPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 345666677777653 2 24689999999888776 246678888888886 66789999999998754
No 72
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.08 E-value=4 Score=31.64 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=49.4
Q ss_pred cCcchHHHHHHHHh----cCccccchHHHHHHHHHH-H---HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 28 QGITKPAIRRLARR----GGVKRISGLIYEETRGVL-K---IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 28 ~~ip~a~IkRiar~----~G~~riS~da~~~l~~~~-e---~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
..++...+..+++. .++ .++++++..+.... . .....+++.|..+|.-.++.+|+.+||..|+...
T Consensus 364 ~~~~~~e~~~iL~~~~~~~~~-~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 364 MLYTPQEMKQIIKIRAQTEGI-NISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp CCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 34555666666643 243 48999998888765 2 3567778888888888899999999999998764
No 73
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=84.98 E-value=1.2 Score=26.60 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=38.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcC
Q 034148 45 KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 95 (103)
Q Consensus 45 ~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g 95 (103)
..+++||-.+|.++=...=..+=+....||+..|...||.+.+..|-..++
T Consensus 4 l~Wt~EAe~~LkkIP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 4 LSWTAEAEKMLGKVPFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CEECHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 358889998888854333344555667899999999999999988876554
No 74
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=84.77 E-value=0.92 Score=27.04 Aligned_cols=49 Identities=12% Similarity=-0.041 Sum_probs=34.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 46 RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 46 riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.+++||-.+|.++=...=..+=+....||+..|...||.+.+..|-...
T Consensus 4 ~Wt~EAe~~LkkIP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 4 RWTSEAKTKLKNIPFFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp EECHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 4778888888774333333444556688888999999998888876654
No 75
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.27 E-value=1.6 Score=30.61 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=35.8
Q ss_pred ccchHH-HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 46 RISGLI-YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 46 riS~da-~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.+++++ ...+..... .-+..+++.|..+|...++.+|+.+|+..|++..
T Consensus 199 ~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 199 PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 344444 344444333 2567788899999999999999999999999864
No 76
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=83.12 E-value=1.9 Score=31.77 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=38.9
Q ss_pred HHHHHHHhcCccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------CCCceecHHHHHHH
Q 034148 34 AIRRLARRGGVKRIS-----GLIYEETRGVLKIFLENVIRDAVTYTEH------------------ARRKTVTAMDVVYA 90 (103)
Q Consensus 34 ~IkRiar~~G~~riS-----~da~~~l~~~~e~~~~~I~~dA~~~a~h------------------a~RkTI~~~DV~~A 90 (103)
.+++++-+.|+.+++ .+.+- +.+|.-+++...+.+|.. .++-.|+++||..|
T Consensus 63 ~F~~mc~siGVDPLa~s~kg~~~lg-----~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rA 137 (233)
T 1u5t_A 63 KFMHMCSSIGIDPLSLFDRDKHLFT-----VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKS 137 (233)
T ss_dssp HHHHHHHHHTCCHHHHTTSSGGGTT-----HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCccCCccccccC-----cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHH
Confidence 578899999999888 33333 234444444444444421 12238999999999
Q ss_pred HHhcCCccccc
Q 034148 91 LKRQGRTLYGF 101 (103)
Q Consensus 91 lkr~g~~lYgf 101 (103)
++.+.-- -||
T Consensus 138 ik~L~~L-~gf 147 (233)
T 1u5t_A 138 IDMLKSL-ECF 147 (233)
T ss_dssp HHHHTTT-CCC
T ss_pred HHHhhhc-cCe
Confidence 9987432 455
No 77
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.80 E-value=2.7 Score=27.86 Aligned_cols=62 Identities=10% Similarity=-0.002 Sum_probs=38.7
Q ss_pred cCcchHHHHHHHHh----cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 034148 28 QGITKPAIRRLARR----GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYAL 91 (103)
Q Consensus 28 ~~ip~a~IkRiar~----~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Al 91 (103)
..++...+..+++. .+. .+++++++.+.+...-....+...+...+..+ +.+|+.+||..++
T Consensus 183 ~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~-~~~i~~~~v~~~~ 248 (250)
T 1njg_A 183 KALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAML 248 (250)
T ss_dssp CCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTT-TSSBCHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc-CceecHHHHHHHh
Confidence 34555556655543 343 68899998888876544444444333334333 3489999999886
No 78
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=82.34 E-value=6.5 Score=25.61 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 60 KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 60 e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
...+..+++.|...|...+...|+++++.+||=.
T Consensus 83 s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~ 116 (146)
T 3fh2_A 83 TPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIR 116 (146)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHh
Confidence 3456788899999999999999999999999854
No 79
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=81.86 E-value=0.71 Score=37.59 Aligned_cols=66 Identities=20% Similarity=0.154 Sum_probs=46.8
Q ss_pred CcchHHHHHHHHhcC---ccccchHHHHHHHHHHHH------------------HHHHHHHHHHHHHhhCCCceecHHHH
Q 034148 29 GITKPAIRRLARRGG---VKRISGLIYEETRGVLKI------------------FLENVIRDAVTYTEHARRKTVTAMDV 87 (103)
Q Consensus 29 ~ip~a~IkRiar~~G---~~riS~da~~~l~~~~e~------------------~~~~I~~dA~~~a~ha~RkTI~~~DV 87 (103)
.++...++++...+. ...+|+++.+.|.+.... -+..+++.|...|.-.+|.+|+.+||
T Consensus 501 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv 580 (595)
T 3f9v_A 501 IIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDA 580 (595)
T ss_dssp TTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHH
Confidence 344444554443222 236888888877776432 26688888999999999999999999
Q ss_pred HHHHHhc
Q 034148 88 VYALKRQ 94 (103)
Q Consensus 88 ~~Alkr~ 94 (103)
..|++..
T Consensus 581 ~~Ai~l~ 587 (595)
T 3f9v_A 581 ERAINIM 587 (595)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999754
No 80
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=80.69 E-value=4 Score=26.80 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=51.6
Q ss_pred cCcchHHHHHHHHhcCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCC
Q 034148 28 QGITKPAIRRLARRGGVKRISGLIYEETRGVL-KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
Q Consensus 28 ~~ip~a~IkRiar~~G~~riS~da~~~l~~~~-e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~ 96 (103)
..+|...++.++|+.| +|+.-++.+...- ...-+++.+-.....+..|++.-+.+++..||+..+.
T Consensus 21 d~v~~~~WK~~aRkLG---Lse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l 87 (112)
T 1ich_A 21 ENVPPLRWKEFVKRLG---LSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDL 87 (112)
T ss_dssp HHSCSTTHHHHHHHHT---CCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHcC---CCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhcc
Confidence 3578889999999999 6777777777443 3455666677778888888888899999999997664
No 81
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.62 E-value=2.6 Score=29.81 Aligned_cols=44 Identities=20% Similarity=0.109 Sum_probs=34.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 51 IYEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 51 a~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.++.+....+ .-+..++..|..+|...++.+|+.+|+..|++..
T Consensus 211 ~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 211 NLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp CHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 3555555433 3577889999999999999999999999999853
No 82
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=79.38 E-value=10 Score=30.92 Aligned_cols=66 Identities=17% Similarity=0.013 Sum_probs=46.3
Q ss_pred CcchHHHHHHH---H-hcCccccchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhCCCceec
Q 034148 29 GITKPAIRRLA---R-RGGVKRISGLIYEETRGVLKI---------------------FLENVIRDAVTYTEHARRKTVT 83 (103)
Q Consensus 29 ~ip~a~IkRia---r-~~G~~riS~da~~~l~~~~e~---------------------~~~~I~~dA~~~a~ha~RkTI~ 83 (103)
.++...++++. + ..-...+|+++.+.+.+.... -+..+++-|..+|.-.+|..|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 46666666544 3 222356888888777765332 1334778888999999999999
Q ss_pred HHHHHHHHHhc
Q 034148 84 AMDVVYALKRQ 94 (103)
Q Consensus 84 ~~DV~~Alkr~ 94 (103)
++||..|++..
T Consensus 473 ~eDV~~Ai~L~ 483 (506)
T 3f8t_A 473 PEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999854
No 83
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.95 E-value=2.4 Score=33.79 Aligned_cols=49 Identities=22% Similarity=0.135 Sum_probs=37.8
Q ss_pred ccchHH-HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 46 RISGLI-YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 46 riS~da-~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.+++++ ++.|.+..+ .-+..|+.+|..+|-..+|..|+.+|+..|+++.
T Consensus 370 ~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv 423 (437)
T 4b4t_I 370 NLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERV 423 (437)
T ss_dssp CBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 345543 566665443 4578899999999999999999999999999853
No 84
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.73 E-value=2.6 Score=33.23 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=34.4
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 52 YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 52 ~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
++.|.+..+ .-+..++.+|..+|-..+|..|+.+|+..|+++
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 556665433 457888999999999999999999999999985
No 85
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=78.13 E-value=11 Score=24.22 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 60 KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 60 e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
...+..+++.|...|...+...|+++++.+||=.
T Consensus 81 s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 81 TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHh
Confidence 3456778889999999989999999999999854
No 86
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=78.09 E-value=11 Score=27.17 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=46.7
Q ss_pred cchHHHHHHHH----hcCccccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCC
Q 034148 30 ITKPAIRRLAR----RGGVKRISGLIYEETRGVLK---IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
Q Consensus 30 ip~a~IkRiar----~~G~~riS~da~~~l~~~~e---~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~ 96 (103)
++...+..+++ ..+ ..+++++.+.|..... ..+..+++.+..+|...+..+|+.+|+..++...+.
T Consensus 184 ~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 184 YKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGV 256 (338)
T ss_dssp CCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 34444444443 334 3589999998887432 356677777888888888899999999999987554
No 87
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.35 E-value=2.2 Score=29.80 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=35.0
Q ss_pred ccchHH-HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 034148 46 RISGLI-YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYAL 91 (103)
Q Consensus 46 riS~da-~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Al 91 (103)
.+++++ +..+.+..+ .-+..++++|..+|...++.+|+.+|+..|+
T Consensus 203 ~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 203 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 455555 666665544 3467888899999988888999999999886
No 88
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.82 E-value=1.6 Score=30.33 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=30.9
Q ss_pred HHHHhcCccccchH-HHHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 37 RLARRGGVKRISGL-IYEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 37 Riar~~G~~riS~d-a~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.+++..+.. .+.+ ..+.+..... .-+..++.+|...|...++.+|+.+|+..|+++.
T Consensus 188 ~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 188 QHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 334444543 2223 3355554332 3567788888888888889999999999999864
No 89
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=75.42 E-value=7.4 Score=30.42 Aligned_cols=67 Identities=4% Similarity=-0.017 Sum_probs=45.4
Q ss_pred cCcchHHHHHHHHhcC----------ccccchHHHHHHHHHHHH---HHHHHHHHHHHHHhhC--CCceecHHHHHHHHH
Q 034148 28 QGITKPAIRRLARRGG----------VKRISGLIYEETRGVLKI---FLENVIRDAVTYTEHA--RRKTVTAMDVVYALK 92 (103)
Q Consensus 28 ~~ip~a~IkRiar~~G----------~~riS~da~~~l~~~~e~---~~~~I~~dA~~~a~ha--~RkTI~~~DV~~Alk 92 (103)
..++...+..++++.- ...+++++.+.|.+...- .+..+++.+..++... +..+||.+||..++.
T Consensus 163 ~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 163 KSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp CCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 3456666666665431 235899999999887543 3445566666666533 667899999999997
Q ss_pred hc
Q 034148 93 RQ 94 (103)
Q Consensus 93 r~ 94 (103)
..
T Consensus 243 ~~ 244 (447)
T 3pvs_A 243 ER 244 (447)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 90
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=74.91 E-value=2.5 Score=30.14 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=34.3
Q ss_pred ccchHH-HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 034148 46 RISGLI-YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYAL 91 (103)
Q Consensus 46 riS~da-~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Al 91 (103)
.+++++ +..+....+ .-+..++++|..+|...++.+|+.+|+..|+
T Consensus 227 ~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 227 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 455555 555555443 3466788889999988888999999999886
No 91
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.60 E-value=3.8 Score=32.44 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=34.4
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 52 YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 52 ~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
++.|.+..+ .-+..++.+|..+|-..++..|+.+|+..|+++.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 555555433 3577889999999999999999999999999863
No 92
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.55 E-value=3.1 Score=33.43 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=34.5
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 52 YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 52 ~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
++.|.+..+ .-+..|+.+|..+|-..+|+.|+.+|+..|+++.
T Consensus 404 l~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 404 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 455555443 3478889999999988999999999999999863
No 93
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.92 E-value=1.9 Score=31.18 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=38.3
Q ss_pred CcchHHHHHHHHh----cCccccchHHHHHHHHHHHHHHHH---HHHHHHHHHhhCCC-ceecHHHHHHHHHh
Q 034148 29 GITKPAIRRLARR----GGVKRISGLIYEETRGVLKIFLEN---VIRDAVTYTEHARR-KTVTAMDVVYALKR 93 (103)
Q Consensus 29 ~ip~a~IkRiar~----~G~~riS~da~~~l~~~~e~~~~~---I~~dA~~~a~ha~R-kTI~~~DV~~Alkr 93 (103)
.++...+..+++. .|+ .+++++++.+.+...-.+.. +++.+..++...+. .+|+.+||..++..
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENV-KCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCC
Confidence 4455555544443 344 48999999988875544444 34444444433222 28999999987753
No 94
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=73.28 E-value=16 Score=26.72 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=51.5
Q ss_pred ccCcchHHHHHHHHh----cCc-cccchHHHHHHHHHHH---------HHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 27 IQGITKPAIRRLARR----GGV-KRISGLIYEETRGVLK---------IFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 27 ~~~ip~a~IkRiar~----~G~-~riS~da~~~l~~~~e---------~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
+..++...+..+++. .+. ..+++++.+.+.+... .++.+++..+...+...++.+|+.+||..++.
T Consensus 212 l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~ 291 (412)
T 1w5s_A 212 LPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 291 (412)
T ss_dssp CCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 345666667766643 222 3588899999988877 47888888888888888889999999998886
Q ss_pred hc
Q 034148 93 RQ 94 (103)
Q Consensus 93 r~ 94 (103)
..
T Consensus 292 ~~ 293 (412)
T 1w5s_A 292 EN 293 (412)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 95
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=71.17 E-value=13 Score=27.33 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCccccchH--HHHHHHHHHHHHHHHHHHHHHHHHhh--------------------C---CCceecHHHH
Q 034148 33 PAIRRLARRGGVKRISGL--IYEETRGVLKIFLENVIRDAVTYTEH--------------------A---RRKTVTAMDV 87 (103)
Q Consensus 33 a~IkRiar~~G~~riS~d--a~~~l~~~~e~~~~~I~~dA~~~a~h--------------------a---~RkTI~~~DV 87 (103)
.-+++++-+.|+.+++.. ...++.. +.+|.-+++...+.+|.. + .+-.|+++||
T Consensus 42 ~~F~~mc~siGVDPlas~kg~ws~~lG-~gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi 120 (234)
T 3cuq_A 42 VQFQDMCATIGVDPLASGKGFWSEMLG-VGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDL 120 (234)
T ss_dssp HHHHHHHHHHTCCTTSCTTSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHH
T ss_pred HHHHHHHHHcCCCcccCCcchhhhhcC-cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHH
Confidence 357889999999988855 2222222 133433333333333321 1 1157999999
Q ss_pred HHHHHhc
Q 034148 88 VYALKRQ 94 (103)
Q Consensus 88 ~~Alkr~ 94 (103)
..|++.+
T Consensus 121 ~rAik~L 127 (234)
T 3cuq_A 121 IRAIKKL 127 (234)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999865
No 96
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=70.59 E-value=14 Score=29.52 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=42.5
Q ss_pred cchHHHHHHHHhcCccccchHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhCCCceecHHHHH
Q 034148 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKI-------------FLENVIRDAVTYTEHARRKTVTAMDVV 88 (103)
Q Consensus 30 ip~a~IkRiar~~G~~riS~da~~~l~~~~e~-------------~~~~I~~dA~~~a~ha~RkTI~~~DV~ 88 (103)
++...+..+....--..+++++.+.+.+.... .+..++..|..+|...+|..|+++||.
T Consensus 209 ~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 209 VTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp BCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred ecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 44444554444443456888888888776642 345578888899999999999999998
No 97
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.68 E-value=5.4 Score=31.43 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=37.2
Q ss_pred cchHH-HHHHHHHHHH----HHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 47 ISGLI-YEETRGVLKI----FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 47 iS~da-~~~l~~~~e~----~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+++++ ++.|.+..+- -+..++.+|...|-..+|..|+.+|+..|+...
T Consensus 362 l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 362 LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 414 (428)
T ss_dssp BCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 44443 5666655443 478899999999999999999999999999764
No 98
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=68.89 E-value=12 Score=22.80 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 59 LKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 59 ~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
+++|+.++++.+... .+. |++..|+...-+.
T Consensus 28 ~~~ylr~~Le~~a~~---~~~-~~~~~~l~r~~~~ 58 (73)
T 3h87_C 28 RTEYIRRRLAQDAQT---ARV-TVTAADLRRLRGA 58 (73)
T ss_dssp HHHHHHHHHHHHHTS---CCC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---Ccc-cccHHHHHHHHHH
Confidence 778888888765433 333 7888888876543
No 99
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.74 E-value=4.5 Score=31.93 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=34.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 52 YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 52 ~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
++.|.+..+ .-+..++.+|..+|-..++..|+.+|+..|+++.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 376 WQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 556665443 3578899999999988899999999999999864
No 100
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=66.38 E-value=11 Score=26.77 Aligned_cols=66 Identities=20% Similarity=0.128 Sum_probs=43.9
Q ss_pred CcchHHHHHHHHh----cCccccchHHHHHHHHHH---HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcC
Q 034148 29 GITKPAIRRLARR----GGVKRISGLIYEETRGVL---KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 95 (103)
Q Consensus 29 ~ip~a~IkRiar~----~G~~riS~da~~~l~~~~---e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g 95 (103)
.++...+..+++. .+. .+++++++.|.+.. -..+..+++.+..++...+..+|+.+|+..++....
T Consensus 167 ~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 167 YYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp CCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 3455555555543 343 58999998888763 234555666666666666777899999998887543
No 101
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=64.93 E-value=25 Score=22.72 Aligned_cols=66 Identities=9% Similarity=0.047 Sum_probs=36.3
Q ss_pred chHHHHHHHHhcCccccchHHHHHHHHHHH--HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCC
Q 034148 31 TKPAIRRLARRGGVKRISGLIYEETRGVLK--IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
Q Consensus 31 p~a~IkRiar~~G~~riS~da~~~l~~~~e--~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~ 96 (103)
-...++++-+-.....+...++..+...+. .--..-++++.......+--+|+.+++..+|+..|.
T Consensus 3 ~~~~~~~l~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~ 70 (180)
T 3mse_B 3 SPNVLNNMKSYMKHSNIRNIIINIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGI 70 (180)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCC
Confidence 334455555544555555555555555443 111222333444444555567889999988887764
No 102
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=63.81 E-value=13 Score=21.46 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.2
Q ss_pred CcchHHHHHHHHhcCcc---ccchHHHHHHHHHHHHH
Q 034148 29 GITKPAIRRLARRGGVK---RISGLIYEETRGVLKIF 62 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~---riS~da~~~l~~~~e~~ 62 (103)
+++.++|-+++.. .. +||++..+.+.++++++
T Consensus 11 GVS~sTVSrvLng--~~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVING--KAKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHT--CTTTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcC--CCCCCCCCHHHHHHHHHHHHHh
Confidence 6788899998873 34 78988888888776543
No 103
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=63.17 E-value=13 Score=23.85 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 62 FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 62 ~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.+.++++.|...|...+...|+++++.+||=..
T Consensus 9 ~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~ 41 (148)
T 1khy_A 9 KFQLALADAQSLALGHDNQFIEPLHLMSALLNQ 41 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcC
Confidence 345556669999999999999999999998443
No 104
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=61.48 E-value=15 Score=23.51 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 63 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 63 ~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+.++++.|...|...+...|+++.+.+||=..
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVRE 41 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhC
Confidence 44555668889999899999999999998543
No 105
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=60.71 E-value=19 Score=19.72 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=31.8
Q ss_pred HHHHHHHhcCc-cccchHHHHHHHHHHHHHHHHHHHHHHH
Q 034148 34 AIRRLARRGGV-KRISGLIYEETRGVLKIFLENVIRDAVT 72 (103)
Q Consensus 34 ~IkRiar~~G~-~riS~da~~~l~~~~e~~~~~I~~dA~~ 72 (103)
.|+.++--.|- ..-.++....+.+++-+|+.+++..|.+
T Consensus 5 ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 5 ELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36667777773 5667789999999999999999998875
No 106
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=60.69 E-value=16 Score=23.65 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 64 ENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 64 ~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.++++.|...|...+...|+++++.+||=..
T Consensus 13 ~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~ 43 (145)
T 3fes_A 13 KKAIDLAFESAKSLGHNIVGSEHILLGLLRE 43 (145)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHhC
Confidence 4445558888999999999999999998554
No 107
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=60.68 E-value=24 Score=22.93 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=44.3
Q ss_pred ccCcchHHHHHHHHhcCccccchHHHHHHHH---------HHHHHHH--------------HHHHHHHHHHhhCCCceec
Q 034148 27 IQGITKPAIRRLARRGGVKRISGLIYEETRG---------VLKIFLE--------------NVIRDAVTYTEHARRKTVT 83 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~G~~riS~da~~~l~~---------~~e~~~~--------------~I~~dA~~~a~ha~RkTI~ 83 (103)
.-.|+..-++.+++..|.. ++++-+..+.. ..++|+. +-+.+|-..-...+.=+|+
T Consensus 25 dG~I~~~El~~~lr~lG~~-~t~~el~~~~~~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~ 103 (159)
T 3i5g_C 25 DGDVDAAKVGDLLRCLGMN-PTEAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLIS 103 (159)
T ss_dssp SSCEEGGGHHHHHHHTTCC-CCHHHHHTTTCCSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEEC
T ss_pred CCeECHHHHHHHHHHcCCC-CCHHHHHHHHcccccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCc
Confidence 3357777788888887753 34333322210 0223332 2245566666677777899
Q ss_pred HHHHHHHHHhcCCcc
Q 034148 84 AMDVVYALKRQGRTL 98 (103)
Q Consensus 84 ~~DV~~Alkr~g~~l 98 (103)
.+++..+|..+|.++
T Consensus 104 ~~el~~~l~~~g~~l 118 (159)
T 3i5g_C 104 SAEIRNVLKMLGERI 118 (159)
T ss_dssp HHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999888764
No 108
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=60.59 E-value=12 Score=23.86 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 62 FLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 62 ~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
-+..+++.|...|...+...|.++++.+||=.
T Consensus 83 ~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 83 SFQRVLQRAVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp HHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 45678888999999989999999999999943
No 109
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=60.37 E-value=17 Score=22.76 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 67 IRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 67 ~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
+..+.......+--+|+.+++..+|+..|.+
T Consensus 87 l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 117 (159)
T 2ovk_C 87 FMEAFKTFDREGQGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp HHHHHHHTCTTSSSEECHHHHHHHHHHSSSC
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 4455555556677789999999999988754
No 110
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=59.08 E-value=18 Score=26.76 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhhCCCceecHHHHHHHHHhcCCccccc
Q 034148 49 GLIYEETRGVLKIFLENVI-------------------RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 101 (103)
Q Consensus 49 ~da~~~l~~~~e~~~~~I~-------------------~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~lYgf 101 (103)
++-.+++.+.+.+|+++.+ .....|...+.|.-|+.++...++++.|..+++|
T Consensus 66 ~~~~~~l~~~a~~~v~~~s~~~~~~t~PGi~v~~~~~~~~L~~f~~~A~~~vvt~~~A~~~a~~~gi~~~~~ 137 (252)
T 3u02_A 66 EEKIKEVKTLVIRYVRELADIDHENTNPGIVFLIGEVPKELEEFSLRALREHVTIEEAEHVARKVNAEVYKF 137 (252)
T ss_dssp GGGHHHHHHHHHHHHHHHHTCC-----CCEEEEESSBCHHHHHHHHHHHHSCCCHHHHHHHHHHTTCEEETC
T ss_pred CCCHHHHHHHHHHHHHHHhcccCCCCCCEEEEEeCCCCHHHHHHHHHHHHcccCHHHHHHHHHHCCcEEEec
Confidence 4556666666666666664 5667899999999999999999999999877765
No 111
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=58.98 E-value=13 Score=23.64 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 034148 62 FLENVIRDAVTYTEHARRKTVTAMDVVYAL 91 (103)
Q Consensus 62 ~~~~I~~dA~~~a~ha~RkTI~~~DV~~Al 91 (103)
.+.++++.|...|...+...|+++.+.+||
T Consensus 5 ~~~~~l~~A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 5 ELELSLNMAFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp HHHHHHHHHHHHHHHHTBSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 456677778889988899999999999988
No 112
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=58.06 E-value=35 Score=22.59 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=40.8
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCC
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~ 96 (103)
.|....+.++-+-.....+...+...+...+..--.+-+.++.......+--+|+.+++..+|+..|.
T Consensus 21 ~l~~~~~~~l~~f~~~~~lk~~~l~~i~~~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~ 88 (197)
T 3pm8_A 21 ELSSTLLKNLKNFKKENELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGY 88 (197)
T ss_dssp CCCTTHHHHHHHTTTSCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHccHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 34555566666554555566666665555443332233344444455566678999999999998764
No 113
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=57.80 E-value=14 Score=26.73 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=36.9
Q ss_pred CcchHHHHHHHH----hcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 29 GITKPAIRRLAR----RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 29 ~ip~a~IkRiar----~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
.++...+..+++ ..|+ .+++++.+.+.+...-.+..+...+...+.++ ..+|+.+||..++.
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~-~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAMLG 242 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT-TTCBCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CCcccHHHHHHHhC
Confidence 455555555553 4454 58899998888775544444333333333333 35699999987764
No 114
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=57.71 E-value=15 Score=25.14 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 59 LKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 59 ~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+.....++++.|...|...+-..|+++.+.+||=..
T Consensus 25 fT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 25 LNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp BCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHc
Confidence 444555666668899999899999999999999544
No 115
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=56.51 E-value=30 Score=24.16 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=31.2
Q ss_pred ccchHHHHHHHHHHHH-----------HHHHHHHHHHH-----HHhhCCCc-eecHHHHHHHHHhc
Q 034148 46 RISGLIYEETRGVLKI-----------FLENVIRDAVT-----YTEHARRK-TVTAMDVVYALKRQ 94 (103)
Q Consensus 46 riS~da~~~l~~~~e~-----------~~~~I~~dA~~-----~a~ha~Rk-TI~~~DV~~Alkr~ 94 (103)
.+++++++.|.+.... .+..+++.+.. .+...+.. +|+.+||..+++..
T Consensus 234 ~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 234 AFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp EECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred ccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 6899999999876532 23444444432 22222333 69999999999754
No 116
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=56.17 E-value=15 Score=25.05 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHh-hCCCceecHHHHHHHHH
Q 034148 60 KIFLENVIRDAVTYTE-HARRKTVTAMDVVYALK 92 (103)
Q Consensus 60 e~~~~~I~~dA~~~a~-ha~RkTI~~~DV~~Alk 92 (103)
..-+.+++++|...|. .-+...|.++++.+||=
T Consensus 100 S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl 133 (171)
T 3zri_A 100 SPLLVELLQEAWLLSSTELEQAELRSGAIFLAAL 133 (171)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHH
Confidence 4456788999999999 89999999999999984
No 117
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=56.10 E-value=19 Score=23.22 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 63 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 63 ~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+.++++.|...|..-+...|+++++.+||=..
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhC
Confidence 44555558888888888899999999988544
No 118
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=55.82 E-value=11 Score=21.65 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=27.4
Q ss_pred ccccCcchHHHHHHHHhcC-ccccchHHHHHHHHH
Q 034148 25 DNIQGITKPAIRRLARRGG-VKRISGLIYEETRGV 58 (103)
Q Consensus 25 ~~~~~ip~a~IkRiar~~G-~~riS~da~~~l~~~ 58 (103)
+.+++|.....+.|+++.| +..|.....++|.++
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI 41 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH
Confidence 5788999999999999997 466777777777766
No 119
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=55.76 E-value=38 Score=21.75 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=45.9
Q ss_pred ccCcchHHHHHHHHhcCccccchHHHHHHHHH-----HHHHH------------HHHHHHHHHHHhhCCCceecHHHHHH
Q 034148 27 IQGITKPAIRRLARRGGVKRISGLIYEETRGV-----LKIFL------------ENVIRDAVTYTEHARRKTVTAMDVVY 89 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~G~~riS~da~~~l~~~-----~e~~~------------~~I~~dA~~~a~ha~RkTI~~~DV~~ 89 (103)
.-.|+..-++.++++.|.....++....+... .++|+ .+-+..|-..-...+.=+|+.+++..
T Consensus 30 dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~ 109 (153)
T 3i5g_B 30 DGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKD 109 (153)
T ss_dssp TSCCCHHHHHHHHHHTTSCCCHHHHHHHHHTSSSCCCSHHHHHTTTTTTTTCCCHHHHHHHHHTTCSSCSSCCCHHHHHH
T ss_pred CCeEcHHHHHHHHHHcCCCccHHHHHHHHHhccCCccHHHHHHHHHhhhcccccHHHHHHHHhccccCCCCeEeHHHHHH
Confidence 34688888899999888654433333222211 22232 23355566666666777899999999
Q ss_pred HHHhcCCcc
Q 034148 90 ALKRQGRTL 98 (103)
Q Consensus 90 Alkr~g~~l 98 (103)
+|..+|.++
T Consensus 110 ~l~~~g~~l 118 (153)
T 3i5g_B 110 LLENMGDNF 118 (153)
T ss_dssp HHHSSSSCC
T ss_pred HHHHcCCcC
Confidence 998888754
No 120
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=55.33 E-value=14 Score=23.57 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 60 KIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 60 e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
...+..+++.|...|...+...|+++++.+||=
T Consensus 84 s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 84 SQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 445777888899999988999999999999985
No 121
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=54.52 E-value=17 Score=25.54 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=38.7
Q ss_pred CcchHHHHHHH----HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 29 GITKPAIRRLA----RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 29 ~ip~a~IkRia----r~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
.++...+..++ +..|. .+++++++.|.+...--+..+......++... .+|+.+||..++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~--~~i~~~~v~~~~~ 224 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSS--SCBCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHC
Confidence 34444444444 44455 58999999998776655666555555555432 3699999877653
No 122
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=54.23 E-value=34 Score=20.70 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=41.0
Q ss_pred ccCcchHHHHHHHHhcCccccchHHHHHHHHH----------HHHHHHH----------------HHHHHHHHHhhCCCc
Q 034148 27 IQGITKPAIRRLARRGGVKRISGLIYEETRGV----------LKIFLEN----------------VIRDAVTYTEHARRK 80 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~G~~riS~da~~~l~~~----------~e~~~~~----------------I~~dA~~~a~ha~Rk 80 (103)
.-.|+..-+..+++..|.. ++++.+..+-.. .++|+.- -+..+.......+.-
T Consensus 25 ~G~i~~~el~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G 103 (153)
T 3ox6_A 25 DGYINCRDLGNCMRTMGYM-PTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDG 103 (153)
T ss_dssp SSSCCHHHHHHHHHHTTCC-CCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHTTCCHHHHCHHHHHHHHHHHCTTCSS
T ss_pred CCcCcHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCccCcHHHHHHHHHHHhhccccccccHHHHHHHHHHhCCCCCC
Confidence 3357777777777776653 333333333221 3334332 244455555556666
Q ss_pred eecHHHHHHHHHh-cCCc
Q 034148 81 TVTAMDVVYALKR-QGRT 97 (103)
Q Consensus 81 TI~~~DV~~Alkr-~g~~ 97 (103)
+|+.+++..+|+. .|.+
T Consensus 104 ~i~~~el~~~l~~~~~~~ 121 (153)
T 3ox6_A 104 EISTSELREAMRALLGHQ 121 (153)
T ss_dssp SBCHHHHHHHHHHHHSSC
T ss_pred cCcHHHHHHHHHHHhcCC
Confidence 8999999999987 6654
No 123
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=54.08 E-value=8.6 Score=27.79 Aligned_cols=53 Identities=8% Similarity=-0.017 Sum_probs=30.9
Q ss_pred HHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CCCcee-cHHHHHHHHHh
Q 034148 39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEH-------ARRKTV-TAMDVVYALKR 93 (103)
Q Consensus 39 ar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~h-------a~RkTI-~~~DV~~Alkr 93 (103)
++..+. .+++++++.|.+.. --+.++..-...++.+ .+.+.| +.+||..++..
T Consensus 179 ~~~~~~-~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 179 LKEFNL-ELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHHTTC-CCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCC-CCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHH
Confidence 333454 58888888877655 3333333222222222 334578 99999988864
No 124
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=53.88 E-value=23 Score=20.80 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.5
Q ss_pred hHHHHHHHHhcCccccchHHHHHHHHHH
Q 034148 32 KPAIRRLARRGGVKRISGLIYEETRGVL 59 (103)
Q Consensus 32 ~a~IkRiar~~G~~riS~da~~~l~~~~ 59 (103)
+..+.++|+..|...|+.+++.+..+.+
T Consensus 25 rr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 25 KARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 4567889999999999999998887754
No 125
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=53.84 E-value=25 Score=24.69 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=37.7
Q ss_pred CcchHHHHHHHH----hcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 034148 29 GITKPAIRRLAR----RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYAL 91 (103)
Q Consensus 29 ~ip~a~IkRiar----~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Al 91 (103)
.++...+..+++ ..|+ .+++++++.+.+...--+..+.......+..+ .+|+.+||..++
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~~~~ 231 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVFMVA 231 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SEECHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCHHHHHHHH
Confidence 455555555554 3454 49999999998876655555555444444333 368888887665
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=53.35 E-value=24 Score=27.16 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=38.3
Q ss_pred HHhcCccccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcC
Q 034148 39 ARRGGVKRISGLIYEETRGVLK---IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 95 (103)
Q Consensus 39 ar~~G~~riS~da~~~l~~~~e---~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g 95 (103)
++..++ .+++++++.|..... .-+..+++.+..+|...++ .|+.+++..+|+...
T Consensus 276 ~~~~~~-~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 276 LEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHTC-CCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 333354 489999988887643 2345556667777776665 699999999997643
No 127
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=53.30 E-value=3.9 Score=28.62 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 62 FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 62 ~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
-+..+++.|..+|...++..|+.+|+..|+++.
T Consensus 221 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 221 DLANIINEAALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp HHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 466788888888888888999999999998754
No 128
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=51.94 E-value=12 Score=29.83 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=40.0
Q ss_pred HHHHHhcC-ccccchHH-HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 36 RRLARRGG-VKRISGLI-YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 36 kRiar~~G-~~riS~da-~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
..|++..- -..+++++ ...+..... .-+..++.+|..+|...++..|+.+|+..|+.+.
T Consensus 207 ~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 207 EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp HHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 35555432 23456555 555554433 3466778888888888788899999999999864
No 129
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=51.63 E-value=18 Score=28.62 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=35.5
Q ss_pred ccchHH-HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 46 RISGLI-YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 46 riS~da-~~~l~~~~e----~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
.+++++ ++.+..... .-+..++.+|..+|...++..|+.+|+..|+.+.
T Consensus 203 ~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 203 PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 344444 555554433 2356778889888888889999999999999864
No 130
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=51.45 E-value=23 Score=24.92 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHHH----HHHHHHHHHHHHHhhCC------------CceecHHHHHHHHHhcC
Q 034148 46 RISGLIYEETRGVLKI----FLENVIRDAVTYTEHAR------------RKTVTAMDVVYALKRQG 95 (103)
Q Consensus 46 riS~da~~~l~~~~e~----~~~~I~~dA~~~a~ha~------------RkTI~~~DV~~Alkr~g 95 (103)
.+++++++.+.+...- -+..++++|...+.... ..+|+.+|+..|++...
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 4778888888766543 34455666655554432 35799999999997643
No 131
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=51.41 E-value=42 Score=20.93 Aligned_cols=32 Identities=9% Similarity=0.295 Sum_probs=25.9
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHHhcCCcc
Q 034148 67 IRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 98 (103)
Q Consensus 67 ~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~l 98 (103)
+..|-......+-=+|+.+++..+|...|.++
T Consensus 85 l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~ 116 (148)
T 2lmt_A 85 MREAFKIFDRDGDGFISPAELRFVMINLGEKV 116 (148)
T ss_dssp HHHHHHHHHSSCSSEECHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHCCCCcCcCcHHHHHHHHHHcCccc
Confidence 56677777777888899999999999888654
No 132
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=50.62 E-value=31 Score=25.69 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=33.9
Q ss_pred ccchHHHHHHHHHHHH----HHHHHHHHHHHHHhhC------------CCceecHHHHHHHHHhc
Q 034148 46 RISGLIYEETRGVLKI----FLENVIRDAVTYTEHA------------RRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 46 riS~da~~~l~~~~e~----~~~~I~~dA~~~a~ha------------~RkTI~~~DV~~Alkr~ 94 (103)
.+++++++.|.+..+- -+..++.+|...+... ....|+.+|+..+++..
T Consensus 301 ~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 301 PLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 4788888888876554 3445555555555443 44579999999999865
No 133
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=50.40 E-value=41 Score=24.86 Aligned_cols=58 Identities=12% Similarity=0.057 Sum_probs=35.8
Q ss_pred HHHHHhcCccccchHHHHHHHHHHHH----HHHHHHHHHHHHHhh------------CCCceecHHHHHHHHHhc
Q 034148 36 RRLARRGGVKRISGLIYEETRGVLKI----FLENVIRDAVTYTEH------------ARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 36 kRiar~~G~~riS~da~~~l~~~~e~----~~~~I~~dA~~~a~h------------a~RkTI~~~DV~~Alkr~ 94 (103)
+.+++..+. .++++.++.|.+..+- -+..++..|...+-. +....|+.+|+..|++..
T Consensus 261 ~~~~~~~~~-~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 261 INLMSKEQC-CLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp HHHHHTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHH
T ss_pred HHHHhhcCC-CccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhc
Confidence 334444443 3788888888775443 455555555544433 234689999999999864
No 134
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=47.97 E-value=1e+02 Score=24.50 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=43.8
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHH----------HHHHHHHH------------HHHHHHHHhhCCCceecHHH
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGV----------LKIFLENV------------IRDAVTYTEHARRKTVTAMD 86 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~----------~e~~~~~I------------~~dA~~~a~ha~RkTI~~~D 86 (103)
.|+..-++.+++..|.. ++++-++.|... .++|+.-+ +.+|.......+.-.|+.+|
T Consensus 318 ~IS~eELk~aLrsLG~~-~TeeEI~~Lf~~~D~DgDG~IdFeEFl~lms~~lk~~d~eeeLreAFk~fDkDgdG~IS~eE 396 (440)
T 3u0k_A 318 TITTKELGTVMRSLGQN-PTEAELQDMINEVDADGDGTIDFPEFLIMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAE 396 (440)
T ss_dssp EECHHHHHHHHHHTTCC-CCHHHHHHHHHHHCSSCSSSEEHHHHHHHHHTC------CHHHHHHHHHHCTTCSSEECHHH
T ss_pred EECHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCChHHHHHHHHHHHCCCCcCcCCHHH
Confidence 46777778888887764 444444433322 34554332 34455555566677899999
Q ss_pred HHHHHHhcCCcc
Q 034148 87 VVYALKRQGRTL 98 (103)
Q Consensus 87 V~~Alkr~g~~l 98 (103)
+..+|+.+|.++
T Consensus 397 Lr~vL~~lGe~L 408 (440)
T 3u0k_A 397 LRHVMTNLGEKL 408 (440)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHhCCCC
Confidence 999999887653
No 135
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=47.26 E-value=11 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=27.6
Q ss_pred ccccCcchHHHHHHHHhcC-ccccchHHHHHHHHHH
Q 034148 25 DNIQGITKPAIRRLARRGG-VKRISGLIYEETRGVL 59 (103)
Q Consensus 25 ~~~~~ip~a~IkRiar~~G-~~riS~da~~~l~~~~ 59 (103)
+.+++|.....++|+++.| +..|.....++|.+++
T Consensus 21 ~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vi 56 (84)
T 1z00_B 21 LKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSIL 56 (84)
T ss_dssp HTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHh
Confidence 4678999999999999997 4667777777777663
No 136
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.09 E-value=42 Score=23.47 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=38.4
Q ss_pred CcchHHHHHHHHh----cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 29 GITKPAIRRLARR----GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 29 ~ip~a~IkRiar~----~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
.++...+..+++. .|. .+++++.+.+.+...-.+..+.......+... ..|+.+||..++..
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDV-KYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVDS 230 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHCC
Confidence 4555555555543 454 48899999888876654544444444333222 46999999887753
No 137
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=46.61 E-value=20 Score=20.73 Aligned_cols=32 Identities=6% Similarity=0.107 Sum_probs=21.2
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHHHHHH
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIF 62 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~ 62 (103)
+++.++|-+++. |...||++..+.+.++++++
T Consensus 20 GVS~sTVSr~ln--~~~~vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 20 KVSTATVSRALM--NPDKVSQATRNRVEKAAREV 51 (67)
T ss_dssp TCCHHHHHHTTT--CCCCSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHHh
Confidence 677777777765 33468887777776665543
No 138
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.39 E-value=59 Score=21.25 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=44.9
Q ss_pred ccCcchHHHHHHHHhcCccccchHHHHHHHHH----------HHHHH------------HHHHHHHHHHHhhCCCceecH
Q 034148 27 IQGITKPAIRRLARRGGVKRISGLIYEETRGV----------LKIFL------------ENVIRDAVTYTEHARRKTVTA 84 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~G~~riS~da~~~l~~~----------~e~~~------------~~I~~dA~~~a~ha~RkTI~~ 84 (103)
.-.|+..-++.+++..|.. +++.-+..+... .++|+ .+-+.+|...-...+-=+|+.
T Consensus 25 dG~I~~~El~~~l~~lg~~-~~~~~~~~~~~~~d~d~~~~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~ 103 (176)
T 2lhi_A 25 NGSISSSELATVMRSLGLS-PSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISA 103 (176)
T ss_dssp SSCBCHHHHHHHHHHHTCC-CCHHHHHHHHTTTCSSCSSSBCTTHHHHHHTSSCCSSHHHHHHHHHHHHHCSSCSSSBCH
T ss_pred CCCCCHHHHHHHHHHcCCC-hhHHHHHHHHHHhCcCCCccchHHHHHHHHHHhcccCCcHHHHHHHHHHhCCCCCCcCcH
Confidence 3357777788888887764 444443333311 12222 233556666666777778999
Q ss_pred HHHHHHHHhcCCcc
Q 034148 85 MDVVYALKRQGRTL 98 (103)
Q Consensus 85 ~DV~~Alkr~g~~l 98 (103)
+++..+|...|.++
T Consensus 104 ~el~~~l~~~g~~~ 117 (176)
T 2lhi_A 104 AELKHVLTSIGEKL 117 (176)
T ss_dssp HHHHHHHHTTTCCC
T ss_pred HHHHHHHHHcCccc
Confidence 99999998877653
No 139
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=45.75 E-value=30 Score=22.76 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=20.2
Q ss_pred HHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 70 AVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 70 A~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
+-....-.+--+|+.+++..+|+..|.+
T Consensus 57 ~F~~~D~d~~G~i~~~El~~~l~~~g~~ 84 (191)
T 3k21_A 57 TFLVLDEDGKGYITKEQLKKGLEKDGLK 84 (191)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHcCCC
Confidence 3344445566689999999999888754
No 140
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=45.74 E-value=15 Score=23.12 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHH-HH--hhCCCceecHHHHHHHH
Q 034148 59 LKIFLENVIRDAVT-YT--EHARRKTVTAMDVVYAL 91 (103)
Q Consensus 59 ~e~~~~~I~~dA~~-~a--~ha~RkTI~~~DV~~Al 91 (103)
||.-+..|++.++. .+ ......+|+++|+.--|
T Consensus 54 Ler~i~~i~RK~a~~i~~~~~~~~v~v~~~~l~~~L 89 (94)
T 1qzm_A 54 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCCEEECTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHc
Confidence 45555555555442 23 23445689999987665
No 141
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=44.39 E-value=28 Score=22.40 Aligned_cols=64 Identities=9% Similarity=0.041 Sum_probs=39.1
Q ss_pred HHHHHHHhcCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcC--Cccccc
Q 034148 34 AIRRLARRGGVKRISGLIYEETRGVL-KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG--RTLYGF 101 (103)
Q Consensus 34 ~IkRiar~~G~~riS~da~~~l~~~~-e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g--~~lYgf 101 (103)
.++.+|+..| +|+.-++.+...- ...-+++.+-...+.+..|+ .-|.+.+..||+..+ ..+|.|
T Consensus 37 ~Wk~LAR~LG---lse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~-~AT~~~L~~AL~~~~l~~~v~~~ 103 (114)
T 2of5_A 37 EWEPMVLSLG---LSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGK-QATFQSLHNGLRAVEVDPSLLLH 103 (114)
T ss_dssp THHHHHHTTT---CCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGG-GCCHHHHHHHHHHTTCCTHHHHH
T ss_pred hHHHHHHHcC---CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHcCCCHHHHHH
Confidence 4566666665 6666666666432 22233444444556665544 468889999999876 566765
No 142
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=42.36 E-value=35 Score=22.27 Aligned_cols=64 Identities=11% Similarity=0.140 Sum_probs=38.8
Q ss_pred ccCcchHHHHHHHHhcCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 27 IQGITKPAIRRLARRGGVKRISGLIYEETRGVL-KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~G~~riS~da~~~l~~~~-e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
...+|...++++||+.| +|+.-++.+...- ..-.++..+-.....+..|+ +=+.+++..+|+..
T Consensus 15 ae~m~~~~wK~laR~LG---lse~~Id~I~~d~~~d~~Eq~~qlLr~W~~~~G~-~aa~~~Li~aLr~~ 79 (115)
T 3ezq_A 15 AGVMTLSQVKGFVRKNG---VNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGK-KEAYDTLIKDLKKA 79 (115)
T ss_dssp HHTSCHHHHHHHHHHTT---CCHHHHHHHHHHCSSCHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHcC---CCHhhHHHHHHcCCCChHHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHc
Confidence 34688899999999999 5566666665432 22234455555555554443 33566666666643
No 143
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=42.22 E-value=35 Score=21.92 Aligned_cols=64 Identities=9% Similarity=0.041 Sum_probs=39.2
Q ss_pred HHHHHHHhcCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcC--Cccccc
Q 034148 34 AIRRLARRGGVKRISGLIYEETRGVL-KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG--RTLYGF 101 (103)
Q Consensus 34 ~IkRiar~~G~~riS~da~~~l~~~~-e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g--~~lYgf 101 (103)
.++.+|+..| +|+.-++.+...- ...-+++.+-...+.+..|+ .-|.+-+..||+..+ ..+|.|
T Consensus 37 ~Wk~LAR~LG---lse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~-~AT~~~L~~AL~~~~l~~~v~~~ 103 (115)
T 2o71_A 37 EWEPMVLSLG---LSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGK-QATFQSLHNGLRAVEVDPSLLLH 103 (115)
T ss_dssp THHHHHHHTT---CCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGG-GCCHHHHHHHHHHTTCCTHHHHH
T ss_pred hHHHHHHHcC---CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHcCCCHHHHHH
Confidence 4566666665 6666666666432 22334444445566665554 468889999999876 455665
No 144
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=41.56 E-value=43 Score=20.22 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=27.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 45 KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 45 ~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
..++++-..+|++ +-......+--+|+.+++..+|+.+|..
T Consensus 28 ~~l~~~~~~el~~------------~F~~~D~d~~G~I~~~El~~~l~~lg~~ 68 (100)
T 2lv7_A 28 VDIPEDELEEIRE------------AFKVFDRDGNGFISKQELGTAMRSLGYM 68 (100)
T ss_dssp CCCCGGGHHHHHH------------HHHHTCSSCSSCBCHHHHHHHHHHHTCC
T ss_pred ccCCHHHHHHHHH------------HHHHHcCCCCCcCCHHHHHHHHHHhCCC
Confidence 4566666666655 3444456666678888888888877754
No 145
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=40.88 E-value=18 Score=22.42 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=42.0
Q ss_pred cCcchHHHHHHHHhcCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCC
Q 034148 28 QGITKPAIRRLARRGGVKRISGLIYEETRGVL-KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
Q Consensus 28 ~~ip~a~IkRiar~~G~~riS~da~~~l~~~~-e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~ 96 (103)
..+|...+++++|+.| +|+.-.+.+...- ..-.++..+-.....+..| ++=+.+++..+|+..+.
T Consensus 8 ~~~~~~~wK~~~R~LG---lse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~g-~~a~~~~Li~~Lr~~~l 73 (86)
T 3oq9_A 8 EDMTIQEAKKFARENN---IKEGKIDEIMHDSIQDTAEQKVQLLLCWYQSHG-KSDAYQDLIKGLKKAEC 73 (86)
T ss_dssp HHSCHHHHHHHHHTTT---SCHHHHHHHHHTCTTCCTTHHHHHHHHHHHHSC-SSSHHHHHHHHHHHTTC
T ss_pred HHcCHHHHHHHHHHcC---CCHhHHHHHHHhCCCChHHHHHHHHHHHHHHhC-cchHHHHHHHHHHHccc
Confidence 4578889999999999 5666666665432 1122444444555555444 44578889999987654
No 146
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=38.94 E-value=66 Score=19.68 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 67 IRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 67 ~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
+..|.......+--+|+.+++..+|...|.+
T Consensus 81 l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 111 (143)
T 2obh_A 81 ILKAFKLFDDDETGKISFKNLKRVAKELGEN 111 (143)
T ss_dssp HHHHHHHHCTTCSSSBCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC
Confidence 4455555556666689999999999887754
No 147
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=38.78 E-value=70 Score=19.93 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=41.7
Q ss_pred cccCcchHHHHHHHHhcCcc----ccchHHHHHHHHH----------HHHHHH-----HHHHHHHHHHhhCCCceecHHH
Q 034148 26 NIQGITKPAIRRLARRGGVK----RISGLIYEETRGV----------LKIFLE-----NVIRDAVTYTEHARRKTVTAMD 86 (103)
Q Consensus 26 ~~~~ip~a~IkRiar~~G~~----riS~da~~~l~~~----------~e~~~~-----~I~~dA~~~a~ha~RkTI~~~D 86 (103)
..-.|+..-++.+++..|.. .++++.+..+-.. .++|+. +-++.+-......+--+|+.++
T Consensus 12 ~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~e 91 (165)
T 1k94_A 12 QDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHE 91 (165)
T ss_dssp GGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHHHHHHHHHCTTCCSBCCHHH
T ss_pred CCCcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCCceECHHH
Confidence 33456666666666666542 3444444443322 222322 2344455555556667899999
Q ss_pred HHHHHHhcCCc
Q 034148 87 VVYALKRQGRT 97 (103)
Q Consensus 87 V~~Alkr~g~~ 97 (103)
+..+|+..|.+
T Consensus 92 l~~~l~~~g~~ 102 (165)
T 1k94_A 92 LRQAIGLMGYR 102 (165)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhCCC
Confidence 99999987754
No 148
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=38.33 E-value=62 Score=19.18 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHHHHhcCccccchHHHHHHHHHHHHH---------HHHHHHHHHHHHhhCCCcee
Q 034148 35 IRRLARRGGVKRISGLIYEETRGVLKIF---------LENVIRDAVTYTEHARRKTV 82 (103)
Q Consensus 35 IkRiar~~G~~riS~da~~~l~~~~e~~---------~~~I~~dA~~~a~ha~RkTI 82 (103)
+-.+.+..|...+|+--.+.|.+-++.| -.+++..|...|-..+...+
T Consensus 4 ~~~~~e~~g~g~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~~ 60 (83)
T 2i5u_A 4 IRSIWENNGFGLMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARNY 60 (83)
T ss_dssp HHHHHHTTTSCSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCCH
Confidence 4456666665578998899998888887 78999999999976665544
No 149
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=37.82 E-value=1e+02 Score=25.08 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHHHH---------HHHHHHHHHHHHhh----CCCceecHHHHHHHHHhc
Q 034148 45 KRISGLIYEETRGVLKIF---------LENVIRDAVTYTEH----ARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 45 ~riS~da~~~l~~~~e~~---------~~~I~~dA~~~a~h----a~RkTI~~~DV~~Alkr~ 94 (103)
..+++++++.+......| +.+++.+|...+.. .++.+|+.+||..++...
T Consensus 371 v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 371 VRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 358999999998877765 44566666666554 457789999999998764
No 150
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=37.31 E-value=61 Score=18.79 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=18.3
Q ss_pred HHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 69 DAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 69 dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
++.......+--+|+.+++..+|+..|.+
T Consensus 28 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 28 QEFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 34444445555668888888887776643
No 151
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=36.06 E-value=61 Score=25.62 Aligned_cols=37 Identities=5% Similarity=-0.007 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCcc
Q 034148 59 LKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 98 (103)
Q Consensus 59 ~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~l 98 (103)
+...+.-.+.+|..+++.+| ++++||..+|+..|.|+
T Consensus 237 ~Nril~~~~~EA~~l~~~~G---a~~e~ID~a~~~~G~pm 273 (460)
T 3k6j_A 237 FNRLLHVYFDQSQKLMYEYG---YLPHQIDKIITNFGFLM 273 (460)
T ss_dssp HHHHHHHHHHHHHHHHHTSC---CCHHHHHHHHHHHTBSS
T ss_pred HHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHcCCCc
Confidence 44445556778999997777 89999999999777763
No 152
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.59 E-value=30 Score=27.08 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=38.1
Q ss_pred cchHHHHHHH----HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 034148 30 ITKPAIRRLA----RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
Q Consensus 30 ip~a~IkRia----r~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk 92 (103)
++...+..++ ...|+ .+++++++.|.+...--+.+++..+..++. +.++|+.+||..++.
T Consensus 209 ~~~~~~~~~L~~i~~~~~~-~i~~~~l~~la~~s~GdiR~~i~~L~~~~~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 209 PDANSIKSRLMTIAIREKF-KLDPNVIDRLIQTTRGDIRQVINLLSTIST--TTKTINHENINEISK 272 (516)
T ss_dssp CCHHHHHHHHHHHHHHHTC-CCCTTHHHHHHHHTTTCHHHHHHHHTHHHH--HSSCCCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Confidence 4444444443 33454 489999998887755445555554444443 456799999988876
No 153
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=34.70 E-value=85 Score=19.67 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 67 IRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 67 ~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
+..+-......+--+|+.+++..+|+..|.+
T Consensus 76 ~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 106 (172)
T 2znd_A 76 WQNVFRTYDRDNSGMIDKNELKQALSGFGYR 106 (172)
T ss_dssp HHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCCccCHHHHHHHHHHcCCC
Confidence 3444455555666789999999999887754
No 154
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=33.83 E-value=76 Score=18.89 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 66 VIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 66 I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
.+..+.......+.-+|+.+++..+++..|.+
T Consensus 85 ~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 116 (147)
T 4ds7_A 85 ELLEAFKVFDKNGDGLISAAELKHVLTSIGEK 116 (147)
T ss_dssp HHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHcCCC
Confidence 34445555555677789999999999987754
No 155
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=33.33 E-value=17 Score=25.82 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh----c-CCccccc
Q 034148 46 RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR----Q-GRTLYGF 101 (103)
Q Consensus 46 riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr----~-g~~lYgf 101 (103)
.|..+-|+.|-|.+..|++-++..+.....|.+=+.-+.+||+..|+. . ....|+|
T Consensus 75 ~i~~~~y~DLDElI~~~V~pm~~~v~el~~h~kf~~g~~~eve~~L~~ek~~nP~~i~Y~f 135 (197)
T 3or8_A 75 VVEGQRYHDLDQIIVEYLQNKIRLLNELTSNEKFKAGTKKEVVKFIEDYSKVNPKKSVYYF 135 (197)
T ss_dssp EETTEEESSHHHHHHHTHHHHHHHHHHHHTSTTEECSCHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EECCeEECCHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 466678899999999999999999999999977777788899988853 2 2445876
No 156
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.33 E-value=1.5e+02 Score=24.72 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred chHHHHHHHHhcCccccchHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhhCCCceecHHHHHHHH
Q 034148 31 TKPAIRRLARRGGVKRISGLIYEETRGVLKIFLE-------------------NVIRDAVTYTEHARRKTVTAMDVVYAL 91 (103)
Q Consensus 31 p~a~IkRiar~~G~~riS~da~~~l~~~~e~~~~-------------------~I~~dA~~~a~ha~RkTI~~~DV~~Al 91 (103)
+...+.+++++.|+. .+.+.+.++.++. .+++.|...|...+...|..+++.+||
T Consensus 42 ~~~~~~~iL~~~gvd------~~~l~~~l~~~l~~~p~~~~~~~~~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlal 115 (854)
T 1qvr_A 42 ERSLAWRLLEKAGAD------PKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLAL 115 (854)
T ss_dssp SSSHHHHHHHTTSSC------HHHHHHHHHHHHHTSCCCCGGGTTCEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHH
T ss_pred CCcHHHHHHHHcCCC------HHHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHH
No 157
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=33.07 E-value=87 Score=19.32 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 67 IRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 67 ~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
+..+.......+--+|+.+++..+|+..|.+
T Consensus 103 ~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 133 (169)
T 3qrx_A 103 ILKAFRLFDDDNSGTITIKDLRRVAKELGEN 133 (169)
T ss_dssp HHHHHHHHCTTCSSSBCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 3344444545566679999999999988754
No 158
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=32.87 E-value=72 Score=18.30 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCCccc
Q 034148 47 ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99 (103)
Q Consensus 47 iS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~lY 99 (103)
+|.++++.+.+.++....+ -|.-+.++.+-|..-|=.+|-.+|
T Consensus 7 vs~~v~~~I~~ive~r~qe----------GA~~~dvs~Ssv~smLleLGLrVY 49 (55)
T 1dp3_A 7 VSDEIVYKINKIVERRRAE----------GAKSTDVSFSSISTMLLELGLRVY 49 (55)
T ss_dssp CCCTHHHHHHHHHHHHHHH----------TCCSTTCCHHHHHHHHHHHTTSHH
T ss_pred hhhHHHHHHHHHHHHHHHc----------CCCcccccHHHHHHHHHHHhHHHH
Confidence 7888899998888876654 566667888877777767776665
No 159
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=32.70 E-value=74 Score=22.57 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=28.6
Q ss_pred CcchHH-HHHHHHhcCc-----cccchHHHHHHHHHHHHHHHHH
Q 034148 29 GITKPA-IRRLARRGGV-----KRISGLIYEETRGVLKIFLENV 66 (103)
Q Consensus 29 ~ip~a~-IkRiar~~G~-----~riS~da~~~l~~~~e~~~~~I 66 (103)
.+|..+ |.|++.+.|. +.+|+..|.++.+.+.++.+++
T Consensus 155 ~~~VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a~~~ 198 (219)
T 3n0u_A 155 LAILDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVAEAF 198 (219)
T ss_dssp CCCCCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eeeecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHHHHH
Confidence 456555 8999999884 2577888888888887777653
No 160
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=31.65 E-value=76 Score=18.18 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=22.1
Q ss_pred hHHHHHHHHhcCc-----cccchHHHHHHHHH
Q 034148 32 KPAIRRLARRGGV-----KRISGLIYEETRGV 58 (103)
Q Consensus 32 ~a~IkRiar~~G~-----~riS~da~~~l~~~ 58 (103)
.+.|+..|+..|. -||+.+++++...+
T Consensus 15 ~~aIR~WAr~nG~~VsdRGRIp~~V~eAY~aA 46 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTRGRIPADVIDAYHAA 46 (55)
T ss_dssp HHHHHHHHHHTTCCCCSSSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHc
Confidence 4689999999983 78999998887664
No 161
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=31.50 E-value=42 Score=23.61 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=20.4
Q ss_pred CcchHHHHHHH---------HhcCccccchHHHHHHH
Q 034148 29 GITKPAIRRLA---------RRGGVKRISGLIYEETR 56 (103)
Q Consensus 29 ~ip~a~IkRia---------r~~G~~riS~da~~~l~ 56 (103)
.||.++|+||- ...|+.+||+.-+.+..
T Consensus 2 ~i~~~~~~Rl~~y~r~l~~l~~~g~~~iss~~l~~~~ 38 (211)
T 2dt5_A 2 KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGGLA 38 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHh
Confidence 47889988875 44689999987655443
No 162
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=31.35 E-value=30 Score=25.05 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=12.7
Q ss_pred eecHHHHHHHHHhcC
Q 034148 81 TVTAMDVVYALKRQG 95 (103)
Q Consensus 81 TI~~~DV~~Alkr~g 95 (103)
.|+.+|+..||+...
T Consensus 285 ~it~~df~~al~~~~ 299 (322)
T 3eie_A 285 DLTIKDFLKAIKSTR 299 (322)
T ss_dssp CCCHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHhcC
Confidence 499999999998653
No 163
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=31.06 E-value=98 Score=19.30 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=41.9
Q ss_pred cccCcchHHHHHHHHhcCcc----ccchHHHHHHHHH----------HHHHHH-----HHHHHHHHHHhhCCCceecHHH
Q 034148 26 NIQGITKPAIRRLARRGGVK----RISGLIYEETRGV----------LKIFLE-----NVIRDAVTYTEHARRKTVTAMD 86 (103)
Q Consensus 26 ~~~~ip~a~IkRiar~~G~~----riS~da~~~l~~~----------~e~~~~-----~I~~dA~~~a~ha~RkTI~~~D 86 (103)
..-.|+..-++.+++..|.. .++.+.+..+-.. .++|+. +-+..+-......+--+|+.++
T Consensus 14 ~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~e 93 (167)
T 1gjy_A 14 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQE 93 (167)
T ss_dssp TTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHHHHHHHHHHHCTTCCSEECHHH
T ss_pred CCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHHH
Confidence 33456666666666666542 4454444444322 223322 2234445555556667899999
Q ss_pred HHHHHHhcCCc
Q 034148 87 VVYALKRQGRT 97 (103)
Q Consensus 87 V~~Alkr~g~~ 97 (103)
+..+|+..|.+
T Consensus 94 l~~~l~~~g~~ 104 (167)
T 1gjy_A 94 LQKALTTMGFR 104 (167)
T ss_dssp HHHHHHTTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999887754
No 164
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=30.95 E-value=97 Score=24.51 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=33.8
Q ss_pred ccchHHHHHHHHH---------HHHHHHHHHHHHHHHHhh--CCCceecHHHHHHHHHh
Q 034148 46 RISGLIYEETRGV---------LKIFLENVIRDAVTYTEH--ARRKTVTAMDVVYALKR 93 (103)
Q Consensus 46 riS~da~~~l~~~---------~e~~~~~I~~dA~~~a~h--a~RkTI~~~DV~~Alkr 93 (103)
.++++++..+.+. ++..++.++..+...+-. .+..+|+.+|+..++..
T Consensus 282 ~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 282 QLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp EECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred cCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 5788988887653 346667777666554433 35678999999999853
No 165
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=30.90 E-value=1.5e+02 Score=21.94 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=0.0
Q ss_pred CCCCCCCCccCCCCCCccc
Q 034148 1 MSGRGKGGKGLGKGGAKRH 19 (103)
Q Consensus 1 ~~~~~~~~~~~~~~g~kr~ 19 (103)
|| ++||.|..++|.++.
T Consensus 1 ~~--~~~~~~~~~~~~~~~ 17 (298)
T 3axj_B 1 MP--KNGGAGHRNTAPRKR 17 (298)
T ss_dssp -------------------
T ss_pred CC--CCCCCccccCCCCCC
Confidence 67 556666666654333
No 166
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=30.63 E-value=1.1e+02 Score=19.76 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=45.5
Q ss_pred cccCcchHHHHHHHHhcCcc----ccchHHHHHHHHH----------HHHHHHHH-----HHHHHHHHhhCCCceecHHH
Q 034148 26 NIQGITKPAIRRLARRGGVK----RISGLIYEETRGV----------LKIFLENV-----IRDAVTYTEHARRKTVTAMD 86 (103)
Q Consensus 26 ~~~~ip~a~IkRiar~~G~~----riS~da~~~l~~~----------~e~~~~~I-----~~dA~~~a~ha~RkTI~~~D 86 (103)
..-.|+..-++.+++..|.. .++.+.+..+-.. .++|+.-+ +..+.......+--+|+.++
T Consensus 45 ~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~e 124 (198)
T 1juo_A 45 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQE 124 (198)
T ss_dssp TTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHHHHHHTTCTTCCSEECHHH
T ss_pred CCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHHH
Confidence 33468888888888887762 5666655555432 23443322 33334444445666899999
Q ss_pred HHHHHHhcCCc
Q 034148 87 VVYALKRQGRT 97 (103)
Q Consensus 87 V~~Alkr~g~~ 97 (103)
+..+|+..|.+
T Consensus 125 l~~~l~~~g~~ 135 (198)
T 1juo_A 125 LQKALTTMGFR 135 (198)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhCCC
Confidence 99999887754
No 167
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=30.00 E-value=1.3e+02 Score=22.15 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=12.7
Q ss_pred ceecHHHHHHHHHhc
Q 034148 80 KTVTAMDVVYALKRQ 94 (103)
Q Consensus 80 kTI~~~DV~~Alkr~ 94 (103)
..|+.+|+..||+..
T Consensus 317 ~~v~~~df~~Al~~~ 331 (355)
T 2qp9_X 317 PDLTIKDFLKAIKST 331 (355)
T ss_dssp CCBCHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHc
Confidence 359999999999875
No 168
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.75 E-value=40 Score=22.13 Aligned_cols=42 Identities=7% Similarity=0.217 Sum_probs=24.2
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCC
Q 034148 43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
Q Consensus 43 G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~ 96 (103)
|...+|++=..++.++. ......+-=+|+.+++..+|+.+|.
T Consensus 1 ga~~Lt~eqi~elk~~F------------~~~D~d~dG~I~~~El~~~l~~lg~ 42 (176)
T 2lhi_A 1 GSSNLTEEQIAEFKEAF------------ALFDKDNNGSISSSELATVMRSLGL 42 (176)
T ss_dssp CCCCCCTTGGGHHHHHH------------HTTCSSCSSCBCHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHHHHH------------HHHCCCCCCCCCHHHHHHHHHHcCC
Confidence 44556666555555432 2223344446777777777777664
No 169
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast collaboratory for structural genomics, secsg; 2.40A {Archaeoglobus fulgidus dsm 4304}
Probab=29.44 E-value=65 Score=23.75 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 63 LENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 63 ~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
..+|++++..+| ++|+.|+.+.|.+..+|
T Consensus 3 ~~ei~e~~s~~~--~gr~vvsE~Ei~r~~~r 31 (246)
T 2ph7_A 3 DVEIVEELSKML--AGRKAVTEEEIRRKAIR 31 (246)
T ss_dssp HHHHHHHHHHHT--TTCSCBCHHHHHHHHHH
T ss_pred cHHHHHHHHHHh--cccccccHHHHHHHHHH
Confidence 356777777776 79999999999887654
No 170
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=28.89 E-value=51 Score=19.97 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=35.6
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCC
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGVL-KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~~-e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~ 96 (103)
.++ ...+++|+..| +++.-++.+...- ..+-+++.+-...+.+..++ .-|.+.+..||+..+.
T Consensus 23 ~lg-~~Wk~Lar~Lg---~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~g~-~At~~~L~~AL~~~~~ 86 (99)
T 1fad_A 23 NVG-RDWKRLARELK---VSEAKMDGIEEKYPRSLSERVRESLKVWKNAEKK-NASVAGLVKALRTCRL 86 (99)
T ss_dssp HHH-HHHHHHHHHTT---CCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGG-GGSHHHHHHHHHHHTC
T ss_pred HHh-hhHHHHHHHcC---CCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHCCc
Confidence 344 67899999988 4455555555321 22333333334444443332 3467888888877664
No 171
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=28.53 E-value=82 Score=21.51 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=13.0
Q ss_pred ceecHHHHHHHHHhc
Q 034148 80 KTVTAMDVVYALKRQ 94 (103)
Q Consensus 80 kTI~~~DV~~Alkr~ 94 (103)
--|+++|+..|++.+
T Consensus 58 ~lISp~Dl~~A~~~l 72 (169)
T 1u5t_B 58 GLISPMEMREACERF 72 (169)
T ss_dssp CCCCHHHHHHHHTTT
T ss_pred CccCHHHHHHHHHHH
Confidence 379999999999865
No 172
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=28.18 E-value=1e+02 Score=18.65 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=40.4
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHH----------HHHHHHH------------HHHHHHHHHhhCCCceecHHH
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGV----------LKIFLEN------------VIRDAVTYTEHARRKTVTAMD 86 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~----------~e~~~~~------------I~~dA~~~a~ha~RkTI~~~D 86 (103)
.|+..-+..+++..|.. ++.+.+..+-.. .++|+.- .+..+.......+--.|+.++
T Consensus 39 ~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e 117 (161)
T 3fwb_A 39 FLDYHELKVAMKALGFE-LPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKN 117 (161)
T ss_dssp EECHHHHHHHHHHTTCC-CCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHHHHHTCCHHHHHHHHHHHHCTTCSSEECHHH
T ss_pred cCcHHHHHHHHHHcCCC-CCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCCCCeEeHHH
Confidence 46777777777776653 444433333322 2333322 234444555555666899999
Q ss_pred HHHHHHhcCCc
Q 034148 87 VVYALKRQGRT 97 (103)
Q Consensus 87 V~~Alkr~g~~ 97 (103)
+..+|+..|.+
T Consensus 118 l~~~l~~~~~~ 128 (161)
T 3fwb_A 118 LRRVAKELGET 128 (161)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhCCC
Confidence 99999988754
No 173
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=27.99 E-value=1.3e+02 Score=19.67 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=21.8
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 67 IRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 67 ~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+++|-.... .+--+|+.+++..+|+..
T Consensus 78 l~~aF~~fD-d~~G~I~~~El~~~l~~l 104 (174)
T 2i7a_A 78 YQHVFQKVQ-TSPGVLLSSDLWKAIENT 104 (174)
T ss_dssp HHHHHHHHC-SBTTBEEGGGHHHHHHTC
T ss_pred HHHHHHHhc-CCCCcCCHHHHHHHHHHh
Confidence 455666667 777789999999999987
No 174
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=27.97 E-value=15 Score=25.55 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=41.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc--CCccccc
Q 034148 46 RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ--GRTLYGF 101 (103)
Q Consensus 46 riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~--g~~lYgf 101 (103)
.|..+-++.|.+.+..|++-+...+.....|..=+. +.++++..|+.. +...|.|
T Consensus 71 ~ig~~~fedLDElI~~yv~pm~~~~~~~~~h~kf~~-s~~~~e~~L~~~~p~~~~Y~f 127 (178)
T 2xp1_A 71 TCSNKHFEDIDEVISVYVRPILRNLKSIKAHAKYFN-SPEDAEKLLSSFDGSKVVYAF 127 (178)
T ss_dssp EETTEEESSHHHHHHHTHHHHHHHHHHHHHSTTBCS-CTTTSHHHHHTCCSSSCEEEE
T ss_pred EECCcEECCHHHHHHHHHHHHHHHHHHHHhCCccCC-CHHHHHHHHHHhCCCCceEEE
Confidence 455556888999999999999888888888876445 788899998765 2334766
No 175
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=27.59 E-value=53 Score=20.67 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=27.4
Q ss_pred CcchHHHHHHHHhcCccc-----cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 034148 29 GITKPAIRRLARRGGVKR-----ISGLIYEETRGVLKIFLENVIRDAVTY 73 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~r-----iS~da~~~l~~~~e~~~~~I~~dA~~~ 73 (103)
++...++..||+.+|+.+ .-++=-+-+..+++.++.++.......
T Consensus 27 G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~ 76 (197)
T 3rd3_A 27 GFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQR 76 (197)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999522 222333444455566666655555444
No 176
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=27.18 E-value=22 Score=25.48 Aligned_cols=53 Identities=9% Similarity=0.096 Sum_probs=27.3
Q ss_pred HHHHhcCccccch-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 37 RLARRGGVKRISG-LIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 37 Riar~~G~~riS~-da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
.++...|+ .+++ ++++.+.+...--+.+++.....++ ...+|+.+||..++..
T Consensus 183 ~~~~~~~~-~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~---~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 183 EICKHEGI-AIADMKVVAALVKKNFPDFRKTIGELDSYS---SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHTC-CBSCHHHHHHHHHHTCSCTTHHHHHHHHHG---GGTCBCC---------
T ss_pred HHHHHcCC-CCCcHHHHHHHHHhCCCCHHHHHHHHHHHh---ccCCCCHHHHHHHhCC
Confidence 33444454 4777 8888888776555555555555555 2335888888776543
No 177
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=26.86 E-value=89 Score=22.16 Aligned_cols=30 Identities=3% Similarity=0.190 Sum_probs=18.4
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHHHH
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLK 60 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~~e 60 (103)
+++.++|.|.+.. ..+||++..+.+.++++
T Consensus 11 gVS~~TVSrvLn~--~~~vs~~tr~rV~~~a~ 40 (340)
T 1qpz_A 11 NVSTTTVSHVINK--TRFVAEETRNAVWAAIK 40 (340)
T ss_dssp TSCHHHHHHHHHT--CSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcC--cCCCCHHHHHHHHHHHH
Confidence 5667777777763 34577776666655433
No 178
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=26.75 E-value=72 Score=24.64 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 60 KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 60 e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
..-+..+++.|...|..-+...|.++++.+||=+.
T Consensus 81 S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~ 115 (468)
T 3pxg_A 81 TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIRE 115 (468)
T ss_dssp CHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhc
Confidence 45567788889999998899999999999999554
No 179
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=26.74 E-value=1.1e+02 Score=18.54 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=43.8
Q ss_pred ccCcchHHHHHHHHhcCccccchHHHHHHHHH------HHHHHHH------------HHHHHHHHHhhCCCceecHHHHH
Q 034148 27 IQGITKPAIRRLARRGGVKRISGLIYEETRGV------LKIFLEN------------VIRDAVTYTEHARRKTVTAMDVV 88 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~G~~riS~da~~~l~~~------~e~~~~~------------I~~dA~~~a~ha~RkTI~~~DV~ 88 (103)
.-.|+..-++.+++..|. .++.+-+..+... .++|+.- -+..+.......+--+|+.+++.
T Consensus 30 ~G~i~~~el~~~l~~~g~-~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~ 108 (153)
T 2ovk_B 30 DGFIGMEDLKDMFSSLGR-VPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLK 108 (153)
T ss_dssp TTCCCHHHHHHHTTTTTS-CCCHHHHHHHHHHSSSCCCSHHHHHTTTTTTTTCCCTTHHHHHHHTTCSSCSSCCCHHHHH
T ss_pred CCeECHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHCCCCCCeEcHHHHH
Confidence 346788888888888776 3555555444332 2333322 23344444444566679999999
Q ss_pred HHHHhcCCcc
Q 034148 89 YALKRQGRTL 98 (103)
Q Consensus 89 ~Alkr~g~~l 98 (103)
.+|+..|.++
T Consensus 109 ~~l~~~g~~~ 118 (153)
T 2ovk_B 109 DLLENMGDNF 118 (153)
T ss_dssp HHHHHSSSCC
T ss_pred HHHHHcCCCC
Confidence 9999887543
No 180
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=26.69 E-value=43 Score=23.65 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=17.2
Q ss_pred CcchHHHHHHH---------HhcCccccchHHHHHH
Q 034148 29 GITKPAIRRLA---------RRGGVKRISGLIYEET 55 (103)
Q Consensus 29 ~ip~a~IkRia---------r~~G~~riS~da~~~l 55 (103)
.||.++|+||- ...|+.+||+.-+.+.
T Consensus 7 ~i~~~~~~Rl~~Y~r~l~~l~~~g~~~iss~~l~~~ 42 (215)
T 2vt3_A 7 KIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDA 42 (215)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEECHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHH
Confidence 57888888875 4468999998766544
No 181
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=26.68 E-value=14 Score=29.63 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 44 VKRISGLIYEETRGVLKIFL-ENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 44 ~~riS~da~~~l~~~~e~~~-~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
...|++||-.+|.++ =.|+ ..+=+.+.+||+..|...||.+.|..|-..+
T Consensus 473 ~~~w~~~a~~~l~~~-p~fvr~~~r~~~e~~a~~~g~~~it~~~~~~a~~~~ 523 (525)
T 3aek_B 473 EIRWMPEAERELRKI-PFFVRGKAKRNTELYAAHKGVCDITVETLYEAKAHY 523 (525)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCCHHHHHHHhhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHhh
Confidence 456999999999654 3344 4455566789999999999999998886554
No 182
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=26.36 E-value=87 Score=17.16 Aligned_cols=20 Identities=0% Similarity=-0.024 Sum_probs=10.5
Q ss_pred HhhCCCceecHHHHHHHHHh
Q 034148 74 TEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 74 a~ha~RkTI~~~DV~~Alkr 93 (103)
+...+--+|+.++....+..
T Consensus 59 ~d~~~~g~i~~~eF~~~~~~ 78 (85)
T 2ktg_A 59 YDKDNSGKFDQETFLTIMLE 78 (85)
T ss_dssp HSSSSCSEEEHHHHHHHHHH
T ss_pred hCCCCCCcCcHHHHHHHHHH
Confidence 33344445666666655543
No 183
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.94 E-value=97 Score=23.87 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHhc
Q 034148 63 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 63 ~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~ 94 (103)
+.+++..|...|..-+...|+++++.++|=..
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~ 41 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVRE 41 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhc
Confidence 34445558888999999999999999998554
No 184
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=25.90 E-value=76 Score=16.33 Aligned_cols=15 Identities=0% Similarity=-0.190 Sum_probs=7.2
Q ss_pred eecHHHHHHHHHhcC
Q 034148 81 TVTAMDVVYALKRQG 95 (103)
Q Consensus 81 TI~~~DV~~Alkr~g 95 (103)
+|+.+++..+++..|
T Consensus 17 ~i~~~el~~~l~~~~ 31 (67)
T 1tiz_A 17 KLSLDEFREVALAFS 31 (67)
T ss_dssp CEEHHHHHHHHHHTC
T ss_pred cCcHHHHHHHHHHhC
Confidence 455555555544443
No 185
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=25.84 E-value=1.1e+02 Score=18.68 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=11.9
Q ss_pred CCCceecHHHHHHHHHhcCC
Q 034148 77 ARRKTVTAMDVVYALKRQGR 96 (103)
Q Consensus 77 a~RkTI~~~DV~~Alkr~g~ 96 (103)
.+--+|+.+++..+|+..|.
T Consensus 39 ~~~G~i~~~e~~~~l~~~~~ 58 (166)
T 2aao_A 39 DKSGQITFEELKAGLKRVGA 58 (166)
T ss_dssp TCCSSBCHHHHHHHGGGGTC
T ss_pred CCCCeEeHHHHHHHHHHhCC
Confidence 34445777777666665543
No 186
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.56 E-value=1.2e+02 Score=18.43 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=28.8
Q ss_pred hcccccCcchHHHHHHHHhcCccccchHHHHHHHHHHHHHH
Q 034148 23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL 63 (103)
Q Consensus 23 ~r~~~~~ip~a~IkRiar~~G~~riS~da~~~l~~~~e~~~ 63 (103)
++...+.||.+.|-..+...+-.+ +.|+..|++....|+
T Consensus 17 LkQrFPEvPd~VVsqc~~qN~~Nl--~aC~~~L~qES~kYL 55 (75)
T 2dae_A 17 LRQKFPEVPEVVVSRCMLQNNNNL--DACCAVLSQESTRYL 55 (75)
T ss_dssp HHHHSSSSCHHHHHHHHTTTTSCS--HHHHHHHHHHHHHHT
T ss_pred HHHhcccCcHHHHHHHHHHhccCH--HHHHHHHHHhcccce
Confidence 455678999999999998877532 467777777766664
No 187
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=25.09 E-value=1.1e+02 Score=17.72 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=8.9
Q ss_pred CCceecHHHHHHHHHhcC
Q 034148 78 RRKTVTAMDVVYALKRQG 95 (103)
Q Consensus 78 ~RkTI~~~DV~~Alkr~g 95 (103)
+--+|+.+|+..+|+..|
T Consensus 42 ~~G~I~~~El~~~l~~~g 59 (94)
T 2kz2_A 42 GNGYISAAELRHVMTNLG 59 (94)
T ss_dssp CCSCBCHHHHHHHHHHHT
T ss_pred CcCcCCHHHHHHHHHHhC
Confidence 333455555555555444
No 188
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=24.66 E-value=1.2e+02 Score=18.06 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 67 IRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 67 ~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
+..+.......+.-+|+.+++..+|+..|.+
T Consensus 87 ~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 117 (149)
T 2mys_C 87 FVEGLRVFDKEGNGTVMGAELRHVLATLGEK 117 (149)
T ss_pred HHHHHHHhCCCCCceEcHHHHHHHHHHhCCC
Confidence 3344444445566679999999999887754
No 189
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}
Probab=24.09 E-value=1.3e+02 Score=18.41 Aligned_cols=37 Identities=27% Similarity=0.203 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH-hcCCcc
Q 034148 59 LKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK-RQGRTL 98 (103)
Q Consensus 59 ~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alk-r~g~~l 98 (103)
++..+.-++.+|..+.+. + .++++||+.|++ -.|+|.
T Consensus 20 ~nRll~~~~~eA~~ll~e-G--va~~~dID~a~~~g~G~p~ 57 (110)
T 3ctv_A 20 PMDFTFVEINEAVKLVEM-G--VATPQDIDTAIKLGLNRPF 57 (110)
T ss_dssp HHHHHHHHHHHHHHHHHT-T--SSCHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHh-C--CCCHHHHHHHHHHcCCCCc
Confidence 344455566667777654 2 248999999998 468875
No 190
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=23.94 E-value=38 Score=29.45 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=46.1
Q ss_pred CCCCcccchhhccccc--CcchHHHHH-HHHhcCccccchHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhCC
Q 034148 13 KGGAKRHRKVLRDNIQ--GITKPAIRR-LARRGGVKRISGLIYEETRGVLKIFLE-----------NVIRDAVTYTEHAR 78 (103)
Q Consensus 13 ~~g~kr~~k~~r~~~~--~ip~a~IkR-iar~~G~~riS~da~~~l~~~~e~~~~-----------~I~~dA~~~a~ha~ 78 (103)
++|++-.|.--.|++. +|+..++.- |++..|-.|+.-|+|. ..++.|.. +++.+.........
T Consensus 97 rsga~~smpGmmdtilnlGlnd~~~~~~la~~~g~~~fa~d~Yr---rfiq~~~~vv~~v~~~~fe~~~~~~k~~~g~~~ 173 (913)
T 1h6z_A 97 RSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYR---RFITMYADIVMQVGREDFEEALSRMKERRGTKF 173 (913)
T ss_dssp EESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHH---HHHHHHHHHHHCCCSTTTSTTTHHHHHHHSCSC
T ss_pred ecccccccchHHHHHHhcCCCHHHHHHHHHHhcCChhHHHHHHH---HHHHHhchhhcCCCHHHHHHHHHHHHHHcCCCc
Confidence 4455555555566654 799999999 9999998888777774 44444433 23333333333334
Q ss_pred CceecHHHHHHHHH
Q 034148 79 RKTVTAMDVVYALK 92 (103)
Q Consensus 79 RkTI~~~DV~~Alk 92 (103)
..-++++|+..+..
T Consensus 174 d~~~~a~dl~~~~~ 187 (913)
T 1h6z_A 174 DTDLTASDLKELCD 187 (913)
T ss_dssp GGGCCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHH
Confidence 45688888877764
No 191
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=23.70 E-value=45 Score=23.71 Aligned_cols=62 Identities=23% Similarity=0.282 Sum_probs=38.8
Q ss_pred CcchHHHHHHH---------HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCce-ecHHHHHHHHHh
Q 034148 29 GITKPAIRRLA---------RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT-VTAMDVVYALKR 93 (103)
Q Consensus 29 ~ip~a~IkRia---------r~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkT-I~~~DV~~Alkr 93 (103)
.||.++|+||. ...|+++||+.-+.+ .+--=-.+|=+|..-|-+..+|.. -..+++...++.
T Consensus 6 ~ip~~ti~RL~~Y~r~l~~l~~~g~~~isS~ela~---~~gv~~~qiRkDls~fg~~G~~g~GY~V~~L~~~i~~ 77 (212)
T 3keo_A 6 SIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIAD---ALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAE 77 (212)
T ss_dssp CCCHHHHTTHHHHHHHHHHHHHTTCCEECHHHHHH---HHTSCHHHHHHHHHTTGGGTTTSSSEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHCCCeEECHHHHHH---HHCCCHHHHHHHHHHHhhcCCCCCCEEHHHHHHHHHH
Confidence 58888888775 456999999865444 444444556666666666655442 455555555553
No 192
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=23.58 E-value=1.3e+02 Score=18.20 Aligned_cols=33 Identities=6% Similarity=0.108 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 65 NVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 65 ~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
+.+..+.......+--.|+.+++..+|+..|.+
T Consensus 96 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~ 128 (162)
T 1top_A 96 EELANCFRIFDKNADGFIDIEELGEILRATGEH 128 (162)
T ss_dssp HHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC
Confidence 334555555555666679999999999877743
No 193
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=23.57 E-value=1e+02 Score=16.99 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=13.0
Q ss_pred CCCceecHHHHHHHHHhcCC
Q 034148 77 ARRKTVTAMDVVYALKRQGR 96 (103)
Q Consensus 77 a~RkTI~~~DV~~Alkr~g~ 96 (103)
.+--+|+.+|+..+|+..|.
T Consensus 26 d~~G~I~~~el~~~l~~~g~ 45 (86)
T 1j7q_A 26 NAENIAPVSDTMDMLTKLGQ 45 (86)
T ss_dssp TTTSCBCHHHHHHHHHHTSC
T ss_pred CCCCcCcHHHHHHHHHHHcC
Confidence 34445777777777776654
No 194
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=23.38 E-value=39 Score=16.59 Aligned_cols=18 Identities=44% Similarity=0.698 Sum_probs=11.7
Q ss_pred cCCCCCCcccchhhcccc
Q 034148 10 GLGKGGAKRHRKVLRDNI 27 (103)
Q Consensus 10 ~~~~~g~kr~~k~~r~~~ 27 (103)
|.|.+|.-+|.++..|+.
T Consensus 3 ggggggaashqrvtpdwm 20 (29)
T 1cn3_F 3 GGGGGGAASHQRVTPDWM 20 (29)
T ss_dssp CCCCSTTTCCCCCEEGGG
T ss_pred CCCCCccccccccCchhh
Confidence 445566777877766664
No 195
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=23.32 E-value=51 Score=24.97 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=33.3
Q ss_pred hHHHHHHHHhcCcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 32 KPAIRRLARRGGVK-RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 32 ~a~IkRiar~~G~~-riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
...|+.+.++.|+. ++++=-+. ++-+.++++.+...+.+.+-+.++.+||...++.
T Consensus 292 ~~~i~~l~~~lglP~~L~e~Gi~------~~~i~~~a~~a~~~~~~~np~~~t~~di~~il~~ 348 (364)
T 3iv7_A 292 LEGLQRLRLSVNAPKRLSDYGFE------ASGIAEAVDVTLEKVPANNPRPVTRENLSRLLEA 348 (364)
T ss_dssp HHHHHHHHHHTTCCCCGGGGTCC------GGGHHHHHHHHHTTSCTTCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHcCCC------HHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHH
Confidence 45577777777753 44321111 1223344444443345677888999999999985
No 196
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=23.25 E-value=1e+02 Score=19.24 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=13.4
Q ss_pred CCCceecHHHHHHHHHhc
Q 034148 77 ARRKTVTAMDVVYALKRQ 94 (103)
Q Consensus 77 a~RkTI~~~DV~~Alkr~ 94 (103)
+.+.++|++|+..+|+.+
T Consensus 39 s~~~~~Tpq~L~~~l~~~ 56 (93)
T 3t98_B 39 ANNSHITPQDLSMAMQKI 56 (93)
T ss_dssp HHHTTSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH
Confidence 455678888888888764
No 197
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=23.17 E-value=1.7e+02 Score=19.52 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=23.5
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHHhcCCcc
Q 034148 67 IRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 98 (103)
Q Consensus 67 ~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~l 98 (103)
+..+.......+--+|+.+++..+|+..|.++
T Consensus 119 l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ 150 (220)
T 3sjs_A 119 AYNLFVMNARARSGTLEPHEILPALQQLGFYI 150 (220)
T ss_dssp HHHHHHHHCCSSTTEECHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHCCCCCCCCcHHHHHHHHHHhCCCC
Confidence 44455555566777899999999999877543
No 198
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=23.06 E-value=1.3e+02 Score=18.67 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcCC
Q 034148 33 PAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
Q Consensus 33 a~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~ 96 (103)
..++.+|++.| +++.-++.+...-...-+++.+-...+.+..|+ .-|.+-+..||+..+.
T Consensus 30 ~~Wk~LAr~Lg---~~~~~I~~ie~~~~~~~eq~~~mL~~W~~r~G~-~AT~~~L~~AL~~~~~ 89 (110)
T 1wxp_A 30 EQWKILAPYLE---MKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGV-HATPENLINALNKSGL 89 (110)
T ss_dssp TTHHHHTTTTT---CCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHGG-GCCHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhC---CCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHcCc
Confidence 35777777777 555555555533222333333444444444333 3567777778776553
No 199
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=22.93 E-value=2.8e+02 Score=21.77 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=43.3
Q ss_pred ccCcchHHHHHHHHhcCccccchHHHHHHHHH----------HHHHHHHH------------HHHHHHHHhhCCCceecH
Q 034148 27 IQGITKPAIRRLARRGGVKRISGLIYEETRGV----------LKIFLENV------------IRDAVTYTEHARRKTVTA 84 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~G~~riS~da~~~l~~~----------~e~~~~~I------------~~dA~~~a~ha~RkTI~~ 84 (103)
.-.|+..-++.+++..|.. ++.+.+..+-.. +++|+.-+ ++.+.....-.+--+|+.
T Consensus 326 dG~Is~~EL~~~L~~lg~~-~s~eel~~Lf~~~D~DgdG~IsfeEFl~ll~~~~~~~~~~e~l~~aFk~fD~D~dG~Is~ 404 (450)
T 3sg6_A 326 DGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISA 404 (450)
T ss_dssp SSEECHHHHHHHHHHTTCC-CCHHHHHHHHHTTCTTSSSSEEHHHHHHHHHC------CHHHHHHHHHHHCTTCSSEECH
T ss_pred CCcCcHHHHHHHHHHhCCC-CCHHHHHHHHHHhccCCCCcccHHHHHHHHHhhccccchhhHHHHHHHHhCCCCCCeEeH
Confidence 3356777777777776653 444444444322 23443322 344555555566778999
Q ss_pred HHHHHHHHhcCCcc
Q 034148 85 MDVVYALKRQGRTL 98 (103)
Q Consensus 85 ~DV~~Alkr~g~~l 98 (103)
+++..+|+..|.++
T Consensus 405 eELr~~L~~lG~~l 418 (450)
T 3sg6_A 405 AELRHVMTNLGEKL 418 (450)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999887543
No 200
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.87 E-value=1e+02 Score=25.04 Aligned_cols=31 Identities=23% Similarity=0.181 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 034148 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYAL 91 (103)
Q Consensus 61 ~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Al 91 (103)
..+.+++..|...|...+...|+++++.++|
T Consensus 4 ~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaL 34 (758)
T 1r6b_X 4 QELELSLNMAFARAREHRHEFMTVEHLLLAL 34 (758)
T ss_dssp HHHHHHHHHHHHHHHHTTBSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Confidence 3456777789999999999999999999998
No 201
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=22.38 E-value=91 Score=25.47 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHhcC
Q 034148 60 KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 95 (103)
Q Consensus 60 e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g 95 (103)
..-+..+++.|...|..-+...|.++++.+||=+.+
T Consensus 81 s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~ 116 (758)
T 3pxi_A 81 TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (758)
T ss_dssp CHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcC
Confidence 455677888899999988999999999999985543
No 202
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=22.34 E-value=78 Score=22.52 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=13.1
Q ss_pred CceecHHHHHHHHHhc
Q 034148 79 RKTVTAMDVVYALKRQ 94 (103)
Q Consensus 79 RkTI~~~DV~~Alkr~ 94 (103)
..+|+.+|+..||+..
T Consensus 249 ~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 249 ELKVSHKHFEEAFKKV 264 (274)
T ss_dssp -CCBCHHHHHHHHTTC
T ss_pred CCeecHHHHHHHHHHh
Confidence 4579999999999865
No 203
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=21.66 E-value=57 Score=18.53 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=15.0
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 034148 45 KRISGLIYEETRGVLKIFLE 64 (103)
Q Consensus 45 ~riS~da~~~l~~~~e~~~~ 64 (103)
.++++++++.+...|+++.+
T Consensus 30 ~~iP~~~IeKIE~lL~e~~k 49 (52)
T 3kz5_E 30 SRVPTECIEKIEAILKELEK 49 (52)
T ss_dssp TTSCHHHHHHHHHHHHHHC-
T ss_pred ccCCHHHHHHHHHHHHHHhh
Confidence 47888888888888777654
No 204
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=21.14 E-value=1.5e+02 Score=17.95 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHHhcCCc
Q 034148 67 IRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
Q Consensus 67 ~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~ 97 (103)
+..+.......+--+|+.+++..+|+..|.+
T Consensus 86 l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 116 (156)
T 1wdc_C 86 YMEAFKTFDREGQGFISGAELRHVLTALGER 116 (156)
T ss_dssp HHHHHHTTCSSSSSEEEHHHHHHHHHHSSSC
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 3344444445566689999999999887754
No 205
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=21.11 E-value=1.1e+02 Score=16.62 Aligned_cols=12 Identities=0% Similarity=0.080 Sum_probs=5.7
Q ss_pred cchHHHHHHHHh
Q 034148 30 ITKPAIRRLARR 41 (103)
Q Consensus 30 ip~a~IkRiar~ 41 (103)
||..--.+|...
T Consensus 14 lp~eL~~~l~~~ 25 (53)
T 1baz_A 14 WPREVLDLVRKV 25 (53)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 665554444433
No 206
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=21.10 E-value=2.2e+02 Score=21.29 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=34.3
Q ss_pred HHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHh
Q 034148 34 AIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
Q Consensus 34 ~IkRiar~~G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha~RkTI~~~DV~~Alkr 93 (103)
.+..+++. ....+++.-+..-.+.+++|+.++.. ..++-+-..+||..|++.
T Consensus 262 g~~E~l~~-~~~~l~~~~~~~e~~~l~~f~~~l~~-------~~g~a~yG~~eV~~Al~~ 313 (373)
T 3agk_A 262 GLKEAVMK-AEKVVEAQMYRDAVNAMEEFKLHLAK-------GTGMIVYGEKDVEAALEM 313 (373)
T ss_dssp HHHHHHHH-CTTCGGGHHHHHHHHHHHHHHHHHHT-------TCCCEEESHHHHHHHHHT
T ss_pred cHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCcEeeCHHHHHHHHHh
Confidence 45555554 34556666666666777777766543 347788888888888864
No 207
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=21.09 E-value=1.5e+02 Score=17.99 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=40.6
Q ss_pred ccCcchHHHHHHHHhcCccccchHHHHHHHHH------HHHHHHH------------HHHHHHHHHhhCCCceecHHHHH
Q 034148 27 IQGITKPAIRRLARRGGVKRISGLIYEETRGV------LKIFLEN------------VIRDAVTYTEHARRKTVTAMDVV 88 (103)
Q Consensus 27 ~~~ip~a~IkRiar~~G~~riS~da~~~l~~~------~e~~~~~------------I~~dA~~~a~ha~RkTI~~~DV~ 88 (103)
.-.|+..-+..+++..|.. ++.+-+..+... .++|+.- -+..+.......+.-+|+.+++.
T Consensus 32 ~G~i~~~el~~~l~~~g~~-~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~ 110 (156)
T 1wdc_B 32 DGFVSKEDIKAISEQLGRA-PDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIK 110 (156)
T ss_dssp SSSCCHHHHHHHHHHHSSC-CCHHHHHHHHTTSSSCCCHHHHHHHHHHHTCSCCCHHHHHHHHHTTCTTCCSCEEHHHHH
T ss_pred CCcCcHHHHHHHHHHhCCC-CCHHHHHHHHHhCCCcCcHHHHHHHHHHHhcCCChHHHHHHHHHHHCcCCCCccCHHHHH
Confidence 3357777777777777753 444433333210 2233222 23344444444566679999999
Q ss_pred HHHHhcCCc
Q 034148 89 YALKRQGRT 97 (103)
Q Consensus 89 ~Alkr~g~~ 97 (103)
.+|...|.+
T Consensus 111 ~~l~~~g~~ 119 (156)
T 1wdc_B 111 DLLENMGDN 119 (156)
T ss_dssp HHHHHSSSC
T ss_pred HHHHHhCCC
Confidence 999887754
No 208
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=21.01 E-value=1.1e+02 Score=16.31 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=5.2
Q ss_pred eecHHHHHHHH
Q 034148 81 TVTAMDVVYAL 91 (103)
Q Consensus 81 TI~~~DV~~Al 91 (103)
+|+.++...++
T Consensus 59 ~i~~~eF~~~~ 69 (77)
T 2joj_A 59 YIGFDDFLDIM 69 (77)
T ss_dssp EEEHHHHHHHH
T ss_pred cCcHHHHHHHH
Confidence 45555444444
No 209
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=20.98 E-value=1.2e+02 Score=17.01 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=23.7
Q ss_pred CcchHHHHHHHHhcCccccchHHHHHHHHHH
Q 034148 29 GITKPAIRRLARRGGVKRISGLIYEETRGVL 59 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS~da~~~l~~~~ 59 (103)
.++...|+.|++.+|++ +.+.-...+...+
T Consensus 16 ~~t~~~I~~il~aaGve-ve~~~~~~~~~~L 45 (58)
T 3a1y_A 16 EINEENLKAVLQAAGVE-PEEARIKALVAAL 45 (58)
T ss_dssp CCCHHHHHHHHHHTTCC-CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCC-ccHHHHHHHHHHH
Confidence 67788899999999984 7777777666654
No 210
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=20.89 E-value=1e+02 Score=18.20 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=23.6
Q ss_pred cCcchHHHHHHHHhcCccccchHHHHHHHHHH
Q 034148 28 QGITKPAIRRLARRGGVKRISGLIYEETRGVL 59 (103)
Q Consensus 28 ~~ip~a~IkRiar~~G~~riS~da~~~l~~~~ 59 (103)
..++...|+.|++.+|++ +.++-...+...+
T Consensus 17 ~~~ta~~I~~il~aaGve-vd~~~~~~~~~aL 47 (70)
T 2lbf_B 17 SSPSAKDIKKILDSVGIE-ADDDRLNKVISEL 47 (70)
T ss_dssp SSCCHHHHHHHHHTTTCC-CCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCC-ccHHHHHHHHHHH
Confidence 367888899999999985 7777666666544
No 211
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=20.89 E-value=96 Score=19.27 Aligned_cols=45 Identities=9% Similarity=-0.002 Sum_probs=26.9
Q ss_pred CcchHHHHHHHHhcCccc-----cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 034148 29 GITKPAIRRLARRGGVKR-----ISGLIYEETRGVLKIFLENVIRDAVTY 73 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~r-----iS~da~~~l~~~~e~~~~~I~~dA~~~ 73 (103)
++...+|..|++.+|+.+ .-++=-+-+..+++.++.++.......
T Consensus 27 G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~ 76 (191)
T 3on4_A 27 GYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVLSDI 76 (191)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678888999999999532 112223344455555555555544444
No 212
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=20.67 E-value=34 Score=26.92 Aligned_cols=36 Identities=3% Similarity=0.085 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHHHhcCCccccc
Q 034148 66 VIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 101 (103)
Q Consensus 66 I~~dA~~~a~ha~RkTI~~~DV~~Alkr~g~~lYgf 101 (103)
+.+....|...+.+.-|+.++....+++.|..+++|
T Consensus 121 ~~~~L~~f~~~A~~~vvt~eeA~~~a~~~Gi~l~~~ 156 (402)
T 3au7_A 121 LAVKLKPFADKAIKDVLQIDEALFVIGKYFIPHLRH 156 (402)
T ss_dssp HHTTTHHHHHHHHHSCCCHHHHHHHHHHTTCCEECC
T ss_pred CCHHHHHHHHHHHhCeeCHHHHHHHHHHCCcEEEEe
Confidence 555667899999999999999999999999776665
No 213
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=20.67 E-value=1.3e+02 Score=24.66 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhCC-------------------------C---ceecHHHHHHHHHhcC
Q 034148 59 LKIFLENVIRDAVTYTEHAR-------------------------R---KTVTAMDVVYALKRQG 95 (103)
Q Consensus 59 ~e~~~~~I~~dA~~~a~ha~-------------------------R---kTI~~~DV~~Alkr~g 95 (103)
...|..+++.+.+.+|.... | --|+++||..|++.+.
T Consensus 404 ~~~f~~ELA~qI~E~c~~~~~~~l~~~nGGmItL~DL~~~~NRa~R~g~elISp~Dll~A~~~le 468 (566)
T 1w7p_D 404 KELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFE 468 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSCCCCEEEHHHHHHHHHHHTTTTTCCCCHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHhhhcccchhcCcCeEEHHHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Confidence 37888888888888887653 4 3699999999998753
No 214
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=20.42 E-value=1.2e+02 Score=18.78 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=15.3
Q ss_pred CcchHHHHHHHHhcCccccc
Q 034148 29 GITKPAIRRLARRGGVKRIS 48 (103)
Q Consensus 29 ~ip~a~IkRiar~~G~~riS 48 (103)
+.+.++|-|++++.|..-++
T Consensus 50 ~vS~aTv~Rf~kklG~~gf~ 69 (111)
T 2o3f_A 50 NSSDAAVIRLCXSLGLKGFQ 69 (111)
T ss_dssp TCCHHHHHHHHHHTTCSSHH
T ss_pred CCCHHHHHHHHHHcCCCCHH
Confidence 56788888888888876554
No 215
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=20.19 E-value=1.5e+02 Score=17.58 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=40.6
Q ss_pred cccCcchHHHHHHHHhcCccccchHHHHHHHHH------HHHHHHH------------HHHHHHHHHhhCCCceecHHHH
Q 034148 26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGV------LKIFLEN------------VIRDAVTYTEHARRKTVTAMDV 87 (103)
Q Consensus 26 ~~~~ip~a~IkRiar~~G~~riS~da~~~l~~~------~e~~~~~------------I~~dA~~~a~ha~RkTI~~~DV 87 (103)
..-.|+..-+..+++..|. .++.+.+..+... .++|+.- -+..+-......+--.|+.+++
T Consensus 20 ~~G~i~~~el~~~l~~~g~-~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El 98 (143)
T 3j04_B 20 RDGFIDKEDLHDMLASMGK-NPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHL 98 (143)
T ss_dssp CTTCCCHHHHHHHHHHTSC-CCCHHHHHTTTTTSSSCCCHHHHHHHHHHTTTSSCCHHHHHHHHTTSCSSSCCCCCTTTH
T ss_pred CCCCcCHHHHHHHHHHhCC-CCCHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCcHHHHHHHHHHHCCCCCCeEcHHHH
Confidence 3446888888888888876 3444443333210 2222222 2333333333445556899999
Q ss_pred HHHHHhcCCc
Q 034148 88 VYALKRQGRT 97 (103)
Q Consensus 88 ~~Alkr~g~~ 97 (103)
..+|+..|.+
T Consensus 99 ~~~l~~~g~~ 108 (143)
T 3j04_B 99 RELLTTMGDR 108 (143)
T ss_dssp HHHHHTSSSC
T ss_pred HHHHHHcCCC
Confidence 9888877654
No 216
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*
Probab=20.16 E-value=64 Score=24.91 Aligned_cols=71 Identities=10% Similarity=-0.029 Sum_probs=43.9
Q ss_pred cccCcchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCceecHHHHHHHHHhcCCccccc
Q 034148 26 NIQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA---RRKTVTAMDVVYALKRQGRTLYGF 101 (103)
Q Consensus 26 ~~~~ip~a~IkRiar~~-G~~riS~da~~~l~~~~e~~~~~I~~dA~~~a~ha---~RkTI~~~DV~~Alkr~g~~lYgf 101 (103)
++-.||...+.+++..- +-..+ .++++...+.+...+..|.. ..... +-.+++..||...|+..|.-+.|+
T Consensus 179 ~~ividN~~l~~~~~~~~~~~~~-~~af~~an~~l~~~v~~i~~----~~~~~~~~g~in~D~aDv~~vm~~~G~a~~G~ 253 (389)
T 4ei7_A 179 SIVLIDNAKLYRKFEEENPSALA-NEYTSYSNKYIADALHEINL----VTSSFTPFSDTHFDASEFAQVINTPGVLSLAK 253 (389)
T ss_dssp EEEEEEHHHHHHHHHHHCTTCCG-GGHHHHHHHHHHHHHHHHHH----HTTSSEESSSCCCCHHHHHHHHTSSEEEEEEE
T ss_pred eEEEeccHHHHHHHhhcCCCCCH-HHHHHHHHHHHHHHHHHHHH----HHhCCCCCCeEEeeHHHHHHHhcCCCEEEEEe
Confidence 33456777777776432 22222 26666666666555554432 22222 678899999999999888766665
No 217
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=20.16 E-value=2.3e+02 Score=19.90 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=33.9
Q ss_pred hHHHHHHHHhcCcc-ccch-------HHHHHHHHHHHHHHHHHHHH-------HHHHHhhC---CCceecHHHHHHHHHh
Q 034148 32 KPAIRRLARRGGVK-RISG-------LIYEETRGVLKIFLENVIRD-------AVTYTEHA---RRKTVTAMDVVYALKR 93 (103)
Q Consensus 32 ~a~IkRiar~~G~~-riS~-------da~~~l~~~~e~~~~~I~~d-------A~~~a~ha---~RkTI~~~DV~~Alkr 93 (103)
...+++++-+.|+. +++. +-|.+|..-+-+|+...... .-.||... |---|+++||..|++.
T Consensus 46 ~~~f~~m~~slGvd~Pl~~~~~~s~~~f~~ELa~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~ 125 (218)
T 3cuq_B 46 TIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKM 125 (218)
T ss_dssp SHHHHHHHHHHTCCCHHHHTTSSCSCHHHHHHHHHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCcchhhccCcccHHHHHHHHHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35577777777776 4442 33444444444443332221 11222221 2123999999999997
Q ss_pred cC
Q 034148 94 QG 95 (103)
Q Consensus 94 ~g 95 (103)
+.
T Consensus 126 l~ 127 (218)
T 3cuq_B 126 LE 127 (218)
T ss_dssp TT
T ss_pred HH
Confidence 64
Done!