BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034150
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 40/45 (88%)
Query: 45 DGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 89
DGS++Q+ALA WTG+ TVPNVFIGGK IGGCDTVVEKHQ +L+P
Sbjct: 57 DGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLP 101
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 40/45 (88%)
Query: 45 DGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 89
DGS++Q+ALA WTG+ TVPNVFIGGK IGGCDTVVEKHQ +L+P
Sbjct: 58 DGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLP 102
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 26 FSSTNNKFLKSLHV--LILEGD-----GSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTV 78
+SS K L+V L++E D G +IQ L TGQ TVPNVFIGGKHIGGC
Sbjct: 30 YSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQHTVPNVFIGGKHIGGCTDT 89
Query: 79 VEKHQGGKLVP 89
V+ ++ G+L P
Sbjct: 90 VKLYRKGELEP 100
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 45 DGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 87
DG+++Q L+E T Q+TVPN+F+ H+GGCD + +Q G L
Sbjct: 54 DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLL 96
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 19 CAFCLVLFSSTNNKFLKSLHV-----LILEGD----GSKIQAALAEWTGQRTVPNVFIGG 69
C +C S+ + L+V L+LE D GS+IQ AL E +GQ+TVPNV+I G
Sbjct: 27 CPYCKATLST----LFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYING 82
Query: 70 KHIGGCDTVVEKHQGGKL 87
KHIGG + + GKL
Sbjct: 83 KHIGGNSDLETLKKNGKL 100
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 9 NEACCPPLESCAFCLVLFSSTNNKF-LKSLHVLILE----GDGSKIQAALAEWTGQRTVP 63
NE C +C ++ K + VL+L+ +G+ IQAAL E GQRTVP
Sbjct: 25 NEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVP 84
Query: 64 NVFIGGKHIGGCDTV 78
N++I GKHIGG D +
Sbjct: 85 NIYINGKHIGGNDDL 99
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 6 VFVN-EACCPPLESCAFCLVLFSSTNNKFLKSLHVLILE--GDGSKIQAALAEWTGQRTV 62
VFV + CP S A LF N K+L VL L+ +GS+IQ AL E +GQ+TV
Sbjct: 22 VFVAAKTYCP--YSKATLSTLFQELNVPKSKAL-VLELDEMSNGSEIQDALEEISGQKTV 78
Query: 63 PNVFIGGKHIGGCDTVVEKHQGGKL 87
PNV+I GKHIGG + + GKL
Sbjct: 79 PNVYINGKHIGGNSDLETLKKNGKL 103
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 4/44 (9%)
Query: 39 VLILE----GDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTV 78
VL+L+ +G+ IQAAL E GQRTVPN++I GKHIGG D +
Sbjct: 48 VLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDL 91
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 19 CAFCLVLFSSTNNKFLKSLHV-----LILEGD----GSKIQAALAEWTGQRTVPNVFIGG 69
C +C S+ + L+V L+LE D GS+IQ AL E +GQ+TVPNV+I G
Sbjct: 47 CPYCKATLST----LFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYING 102
Query: 70 KHIGGCDTVVEKHQGGKL 87
KHIGG + + GKL
Sbjct: 103 KHIGGNSDLETLKKNGKL 120
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 18 SCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGG 74
SC++C + LF N + K + + +LE G++ Q AL + TG+RTVP +F+ G IGG
Sbjct: 58 SCSYCTMAKKLFHDMNVNY-KVVELDLLEY-GNQFQDALYKMTGERTVPRIFVNGTFIGG 115
Query: 75 CDTVVEKHQGGKLVP 89
H+ GKL+P
Sbjct: 116 ATDTHRLHKEGKLLP 130
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 18 SCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGG 74
SC++C + LF N + K + + +LE G++ Q AL + TG+RTVP +F+ G IGG
Sbjct: 44 SCSYCTMAKKLFHDMNVNY-KVVELDLLEY-GNQFQDALYKMTGERTVPRIFVNGTFIGG 101
Query: 75 CDTVVEKHQGGKLVP 89
H+ GKL+P
Sbjct: 102 ATDTHRLHKEGKLLP 116
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 4/42 (9%)
Query: 39 VLILE----GDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCD 76
VL+L+ +G+ IQAAL E GQRTVPN++I GKHIGG D
Sbjct: 292 VLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGND 333
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 18 SCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGG 74
SC++C + LF N + K + + +LE G++ Q AL + TG+RTVP +F+ G IGG
Sbjct: 36 SCSYCTMAKKLFHDMNVNY-KVVELDLLEY-GNQFQDALYKMTGERTVPRIFVNGTFIGG 93
Query: 75 CDTVVEKHQGGKLVP 89
H+ GKL+P
Sbjct: 94 ATDTHRLHKEGKLLP 108
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
Length = 113
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 45 DGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 87
G ++Q L TGQ TVPNVF+ GKHIGGC V+ ++ G L
Sbjct: 57 QGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDL 99
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 45 DGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLV 88
D ++IQ L + TG RTVP VFIG + IGGC + H+ G+L+
Sbjct: 52 DTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELL 95
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 18 SCAFCLVLFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 77
+C FC+ + K ++ ++GD +A A G+R++P +FI +HIGGCD
Sbjct: 25 TCPFCMRALALLKRKGVE-FQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDD 83
Query: 78 VVEKHQGGKLVP 89
+ GKL P
Sbjct: 84 IYALDGAGKLDP 95
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 47 SKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLV 88
++IQ L + TG RTVP VFIG IGGC +V Q G+L+
Sbjct: 55 NEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELL 96
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex
With Glutathione
Length = 105
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 47 SKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLV 88
++IQ L + TG RTVP VFIG IGG +V Q G+L+
Sbjct: 54 NEIQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELL 95
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 26 FSSTNNKFLKSLH-----VLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVE 80
FS T + LKSL+ V ILE + ++ L E++ T P ++I G+ GGCD VE
Sbjct: 35 FSQTVVQILKSLNAPFESVNILENE--LLRQGLKEYSSWPTFPQLYIDGEFFGGCDITVE 92
Query: 81 KHQGGKL 87
++ G+L
Sbjct: 93 AYKSGEL 99
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 45 DGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLV 88
D +++ + +++ T+P V++ G+ +GGCD +++ HQ G LV
Sbjct: 60 DDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLV 103
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 26 FSSTNNKFLKSLHVL-----ILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVE 80
FS+T + LK+L+V ILE + ++ L E++ T P ++IGG+ GGCD +E
Sbjct: 35 FSNTVVQILKNLNVPFEDVNILENE--MLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLE 92
Query: 81 KHQGGKL 87
+ G+L
Sbjct: 93 AFKTGEL 99
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 48 KIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 87
+++A + E +G+ T P +FIG H+GGCD + GKL
Sbjct: 43 ELRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDEGKL 82
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin
From E. Coli
Length = 115
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 14 PPLESCAFCLVLFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIG 73
P L SC F + + +V IL+ I+A L ++ T P +++ G+ +G
Sbjct: 25 PKLPSCGFSAQAVQALAACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVG 82
Query: 74 GCDTVVEKHQGGKL 87
GCD V+E +Q G+L
Sbjct: 83 GCDIVIEMYQRGEL 96
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 3 ECAVFVNEACCPPLESCAFCLVLFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTV 62
E + + P L SC F + + +V IL+ I+A L ++ T
Sbjct: 34 ENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQN--PDIRAELPKYANWPTF 91
Query: 63 PNVFIGGKHIGGCDTVVEKHQGGKL 87
P +++ G+ +GGCD V+E +Q G+L
Sbjct: 92 PQLWVDGELVGGCDIVIEMYQRGEL 116
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 19 CAFCLVLFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTV 78
C FC ++K L S +IL D + + +G+ TVP VFIGGKHIGG D
Sbjct: 180 CPFCAKAKQLLHDKGL-SFEEIILGHDATIVSVRAV--SGRTTVPQVFIGGKHIGGSDD- 235
Query: 79 VEKH 82
+EK+
Sbjct: 236 LEKY 239
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully
Oxidized Form
Length = 82
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 17 ESCAFCLVLFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCD 76
E+C +C + ++K + S L ++G+ +K + + + +G+ TVP +FI +HIGG D
Sbjct: 9 ETCPYCHRAKALLSSKGV-SFQELPIDGNAAK-REEMIKRSGRTTVPQIFIDAQHIGGYD 66
Query: 77 TVVEKHQGGKLVP 89
+ G L P
Sbjct: 67 DLYALDARGGLDP 79
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 18 SCAFCLVLFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 77
+C +C + K +K + + S Q + G+ T P +FIG H+GGCD
Sbjct: 15 NCPYCKRARDLLDKKGVKYTDI---DASTSLRQEMVQRANGRNTFPQIFIGDYHVGGCDD 71
Query: 78 VVEKHQGGKL 87
+ GKL
Sbjct: 72 LYALENKGKL 81
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 23 LVLFSSTNNKFLKSLHVLILEG-------------DGSKIQAALAEWTGQRTVPNVFIGG 69
++LFS T + K + ++ E +GS IQ LA ++ TVP +F+ G
Sbjct: 20 VILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRG 79
Query: 70 KHIGGCDTVVEKHQGGKL 87
K IG TV++ + +L
Sbjct: 80 KFIGDSQTVLKYYSNDEL 97
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin
Glutatione Reductase From Schistosoma Mansoni In
Complex With Auranofin
Length = 598
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 23 LVLFSSTNNKFLKSLHVLILEG-------------DGSKIQAALAEWTGQRTVPNVFIGG 69
++LFS T + K + ++ E +GS IQ LA ++ TVP +F+ G
Sbjct: 20 VILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRG 79
Query: 70 KHIGGCDTVVEKHQGGKL 87
K IG TV++ + +L
Sbjct: 80 KFIGDSQTVLKYYSNDEL 97
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Nadph
Length = 598
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 23 LVLFSSTNNKFLKSLHVLILEG-------------DGSKIQAALAEWTGQRTVPNVFIGG 69
++LFS T + K + ++ E +GS IQ LA ++ TVP +F+ G
Sbjct: 20 VILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRG 79
Query: 70 KHIGGCDTVVEKHQGGKL 87
K IG TV++ + +L
Sbjct: 80 KFIGDSQTVLKYYSNDEL 97
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 36 SLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 89
S L ++G+ +K + + + +G+ TVP +FI +HIGG D + G L P
Sbjct: 27 SFQELPIDGNAAK-REEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDP 79
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 32 KFLKSLHVLILE--GDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLV 88
+F+ + +++ L+ G G ++Q + TG+ TVPN+ + G GG + + + H GKL+
Sbjct: 39 QFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLL 97
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 18 SCAFCLVLFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 77
C F + N+ ++ ILE + +++ L ++ T P +++ G+ +GG D
Sbjct: 31 KCGFSKQILEILNSTGVEYETFDILEDE--EVRQGLKAYSNWPTYPQLYVKGELVGGLDI 88
Query: 78 VVEKHQGGKLVP 89
V E + G+L+P
Sbjct: 89 VKELKENGELLP 100
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 19 CAFCLVLFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTV 78
C F + N+ ++ ILE + +++ L ++ T P +++ G +GG D V
Sbjct: 30 CGFSKQILEILNSTGVEYETFDILEDE--EVRQGLKTFSNWPTYPQLYVRGDLVGGLDIV 87
Query: 79 VEKHQGGKLVP 89
E G+L+P
Sbjct: 88 KELKDNGELLP 98
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 45 DGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 87
+ +++ + E++ T+P +++ + IGGCD + + G+L
Sbjct: 58 EDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGEL 100
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 47 SKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVE 80
++++ + TG +TVP +F G IGG ++E
Sbjct: 61 NELRDYFEQITGGKTVPRIFFGKTSIGGYSDLLE 94
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 47 SKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVE 80
++++ + TG +TVP +F G IGG ++E
Sbjct: 61 NELRDYFEQITGGKTVPRIFFGKTSIGGYSDLLE 94
>pdb|3BK3|A Chain A, Crystal Structure Of The Complex Of Bmp-2 And The First
Von Willebrand Domain Type C Of Crossveinless-2
pdb|3BK3|B Chain B, Crystal Structure Of The Complex Of Bmp-2 And The First
Von Willebrand Domain Type C Of Crossveinless-2
Length = 114
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 8 VNEACCPPLESCAFCLVLFSSTNNKFLKSLHVLILEGDGSK 48
+ +ACC P E A +++ LK+ +++EG G +
Sbjct: 74 IPKACCVPTELSAISMLMLDENEKVVLKNYQDMVVEGCGCR 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,729,125
Number of Sequences: 62578
Number of extensions: 95413
Number of successful extensions: 170
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 41
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)