Query 034150
Match_columns 102
No_of_seqs 182 out of 1117
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 2.8E-32 6.1E-37 165.7 10.9 94 3-98 2-98 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 1.7E-31 3.7E-36 164.5 10.4 94 4-99 8-107 (108)
3 KOG1752 Glutaredoxin and relat 100.0 8.1E-31 1.8E-35 160.0 9.8 94 3-98 8-104 (104)
4 PRK10824 glutaredoxin-4; Provi 100.0 1.9E-30 4.1E-35 161.0 9.3 92 4-100 10-109 (115)
5 TIGR00365 monothiol glutaredox 99.9 1.4E-27 3.1E-32 144.5 8.9 83 4-91 7-97 (97)
6 cd03028 GRX_PICOT_like Glutare 99.9 4.6E-26 9.9E-31 136.1 9.3 80 4-88 3-90 (90)
7 PRK10638 glutaredoxin 3; Provi 99.9 7.8E-26 1.7E-30 133.1 9.9 80 8-92 1-83 (83)
8 TIGR02181 GRX_bact Glutaredoxi 99.9 9.3E-25 2E-29 127.1 9.0 76 11-91 1-79 (79)
9 TIGR02180 GRX_euk Glutaredoxin 99.9 2E-24 4.3E-29 126.3 9.1 79 11-91 1-84 (84)
10 PTZ00062 glutaredoxin; Provisi 99.9 1.7E-24 3.7E-29 146.0 9.2 85 4-93 108-200 (204)
11 COG0278 Glutaredoxin-related p 99.9 3E-24 6.4E-29 128.4 7.3 87 4-95 10-105 (105)
12 cd03419 GRX_GRXh_1_2_like Glut 99.9 9.7E-24 2.1E-28 123.0 9.3 78 10-89 1-81 (82)
13 cd03031 GRX_GRX_like Glutaredo 99.9 1.5E-23 3.3E-28 135.1 10.2 82 10-96 1-95 (147)
14 cd03418 GRX_GRXb_1_3_like Glut 99.9 1.2E-22 2.7E-27 116.7 9.4 71 10-85 1-75 (75)
15 COG0695 GrxC Glutaredoxin and 99.9 7.9E-23 1.7E-27 119.8 8.4 76 10-88 2-80 (80)
16 cd03027 GRX_DEP Glutaredoxin ( 99.9 4.8E-22 1E-26 114.2 8.4 69 9-82 1-72 (73)
17 TIGR02190 GlrX-dom Glutaredoxi 99.9 8.3E-22 1.8E-26 115.0 8.6 72 5-82 4-78 (79)
18 cd03029 GRX_hybridPRX5 Glutare 99.9 1.9E-21 4E-26 111.4 8.2 67 10-82 2-71 (72)
19 PRK12759 bifunctional gluaredo 99.9 3E-21 6.4E-26 141.8 9.0 88 8-99 1-96 (410)
20 TIGR02183 GRXA Glutaredoxin, G 99.8 2E-20 4.3E-25 110.9 8.2 70 11-85 2-81 (86)
21 PRK11200 grxA glutaredoxin 1; 99.8 2.6E-20 5.7E-25 109.8 8.5 70 10-84 2-81 (85)
22 cd02066 GRX_family Glutaredoxi 99.8 2.1E-19 4.5E-24 101.2 8.8 68 10-82 1-71 (72)
23 KOG0911 Glutaredoxin-related p 99.8 6.4E-20 1.4E-24 123.8 7.6 86 4-94 134-227 (227)
24 cd03030 GRX_SH3BGR Glutaredoxi 99.8 7.7E-19 1.7E-23 105.3 8.8 77 11-92 2-91 (92)
25 PF00462 Glutaredoxin: Glutare 99.8 1.4E-18 3.1E-23 96.2 7.2 57 11-72 1-60 (60)
26 TIGR02194 GlrX_NrdH Glutaredox 99.7 7.4E-17 1.6E-21 92.4 6.9 61 11-77 1-65 (72)
27 PRK10329 glutaredoxin-like pro 99.7 1.1E-16 2.3E-21 93.9 7.6 62 10-77 2-66 (81)
28 TIGR02196 GlrX_YruB Glutaredox 99.6 2.2E-14 4.8E-19 81.0 7.4 63 10-77 1-66 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 99.5 8.5E-14 1.8E-18 78.4 7.8 63 10-77 1-66 (73)
30 KOG2824 Glutaredoxin-related p 99.5 1.9E-13 4E-18 94.9 7.4 84 7-95 129-225 (281)
31 TIGR02200 GlrX_actino Glutared 99.4 4.2E-13 9.1E-18 76.7 6.7 62 10-76 1-67 (77)
32 PF04908 SH3BGR: SH3-binding, 99.4 1.8E-12 3.8E-17 78.6 7.6 79 10-93 2-98 (99)
33 cd02973 TRX_GRX_like Thioredox 99.3 2.7E-12 5.8E-17 72.0 4.7 55 10-73 2-64 (67)
34 cd03041 GST_N_2GST_N GST_N fam 99.2 8.5E-11 1.8E-15 67.8 8.1 69 11-84 2-75 (77)
35 cd03037 GST_N_GRX2 GST_N famil 99.2 1.4E-10 3.1E-15 65.6 7.3 66 11-83 1-70 (71)
36 cd00570 GST_N_family Glutathio 99.2 1.6E-10 3.5E-15 63.7 7.2 67 11-82 1-70 (71)
37 cd03040 GST_N_mPGES2 GST_N fam 99.2 3.9E-10 8.5E-15 64.7 8.1 67 10-84 1-74 (77)
38 cd03060 GST_N_Omega_like GST_N 99.1 1.3E-09 2.9E-14 61.7 7.7 64 12-81 2-69 (71)
39 cd03059 GST_N_SspA GST_N famil 99.1 1.4E-09 3.1E-14 61.5 7.7 67 11-83 1-70 (73)
40 cd03055 GST_N_Omega GST_N fami 99.0 3.3E-09 7.2E-14 62.8 8.4 70 7-82 15-88 (89)
41 TIGR00411 redox_disulf_1 small 99.0 2.1E-09 4.6E-14 61.9 6.9 54 10-70 2-62 (82)
42 cd03051 GST_N_GTT2_like GST_N 99.0 1.6E-09 3.5E-14 61.1 6.2 69 11-82 1-73 (74)
43 cd03045 GST_N_Delta_Epsilon GS 99.0 3.2E-09 6.8E-14 60.3 6.8 70 11-83 1-73 (74)
44 PF13417 GST_N_3: Glutathione 98.9 5.3E-09 1.1E-13 59.9 5.8 66 13-84 1-69 (75)
45 cd03056 GST_N_4 GST_N family, 98.9 1.7E-08 3.7E-13 56.8 7.0 69 11-82 1-72 (73)
46 TIGR00412 redox_disulf_2 small 98.8 2.2E-08 4.8E-13 57.7 6.3 52 10-72 2-60 (76)
47 PHA02125 thioredoxin-like prot 98.8 1.6E-08 3.5E-13 58.0 5.6 52 11-72 2-56 (75)
48 cd03052 GST_N_GDAP1 GST_N fami 98.8 5.9E-08 1.3E-12 55.4 6.7 69 11-82 1-72 (73)
49 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 2.4E-08 5.3E-13 59.3 5.2 55 10-73 15-77 (89)
50 cd03036 ArsC_like Arsenate Red 98.7 1.3E-08 2.9E-13 62.7 3.8 43 11-58 1-46 (111)
51 cd03053 GST_N_Phi GST_N family 98.7 1.6E-07 3.5E-12 53.4 7.6 71 11-84 2-75 (76)
52 TIGR01295 PedC_BrcD bacterioci 98.7 7E-08 1.5E-12 60.4 5.8 61 11-74 27-105 (122)
53 cd03061 GST_N_CLIC GST_N famil 98.7 1.7E-07 3.6E-12 56.0 7.0 62 17-84 20-84 (91)
54 PF13192 Thioredoxin_3: Thiore 98.6 1.3E-07 2.9E-12 54.4 6.1 51 10-71 2-59 (76)
55 cd03058 GST_N_Tau GST_N family 98.6 3.6E-07 7.7E-12 51.9 7.6 67 11-83 1-71 (74)
56 cd02977 ArsC_family Arsenate R 98.6 4.5E-08 9.8E-13 59.5 3.8 31 11-43 1-34 (105)
57 cd03054 GST_N_Metaxin GST_N fa 98.5 5.9E-07 1.3E-11 50.8 6.8 55 17-84 14-71 (72)
58 cd03042 GST_N_Zeta GST_N famil 98.5 5.3E-07 1.2E-11 50.7 6.5 68 12-82 2-72 (73)
59 cd03049 GST_N_3 GST_N family, 98.5 7.3E-07 1.6E-11 50.4 6.9 66 11-82 1-72 (73)
60 PRK01655 spxA transcriptional 98.5 2.5E-07 5.5E-12 58.6 4.9 31 11-43 2-35 (131)
61 PF13409 GST_N_2: Glutathione 98.5 2.6E-07 5.6E-12 52.3 4.3 65 18-84 1-69 (70)
62 PRK09481 sspA stringent starva 98.5 1.8E-06 3.9E-11 58.1 8.8 72 7-84 7-81 (211)
63 PF05768 DUF836: Glutaredoxin- 98.5 3.2E-06 6.9E-11 49.2 8.6 52 10-69 1-57 (81)
64 KOG4023 Uncharacterized conser 98.4 1.6E-07 3.5E-12 56.4 2.7 85 9-95 2-100 (108)
65 KOG3029 Glutathione S-transfer 98.4 1.1E-06 2.3E-11 62.1 6.9 78 10-95 90-176 (370)
66 cd03076 GST_N_Pi GST_N family, 98.4 2.8E-06 6.1E-11 48.2 7.4 69 10-84 1-72 (73)
67 cd02954 DIM1 Dim1 family; Dim1 98.4 2.3E-06 5E-11 53.1 7.6 56 11-73 18-82 (114)
68 cd03050 GST_N_Theta GST_N fami 98.4 2.6E-06 5.6E-11 48.5 7.3 70 11-83 1-73 (76)
69 cd03048 GST_N_Ure2p_like GST_N 98.4 2.6E-06 5.6E-11 49.1 6.8 69 11-83 2-76 (81)
70 cd03038 GST_N_etherase_LigE GS 98.4 1.2E-06 2.6E-11 50.9 5.3 64 17-84 14-81 (84)
71 cd02975 PfPDO_like_N Pyrococcu 98.4 1.6E-06 3.4E-11 53.5 5.9 49 10-67 24-81 (113)
72 TIGR01617 arsC_related transcr 98.3 1.2E-06 2.6E-11 54.3 5.2 31 11-43 1-34 (117)
73 cd03032 ArsC_Spx Arsenate Redu 98.3 9.5E-07 2.1E-11 54.7 4.5 31 11-43 2-35 (115)
74 cd03039 GST_N_Sigma_like GST_N 98.3 5.2E-06 1.1E-10 46.8 6.4 68 11-83 1-71 (72)
75 PHA02278 thioredoxin-like prot 98.3 5.9E-06 1.3E-10 50.3 6.9 57 11-72 18-85 (103)
76 cd03080 GST_N_Metaxin_like GST 98.3 7E-06 1.5E-10 46.8 6.9 61 11-84 2-72 (75)
77 PRK13344 spxA transcriptional 98.3 3.6E-06 7.8E-11 53.4 5.9 42 11-54 2-47 (132)
78 PRK10387 glutaredoxin 2; Provi 98.3 5.1E-06 1.1E-10 55.5 6.9 67 11-84 1-71 (210)
79 PRK12559 transcriptional regul 98.2 4.6E-06 9.9E-11 52.9 6.0 42 11-54 2-47 (131)
80 TIGR02182 GRXB Glutaredoxin, G 98.2 4.9E-06 1.1E-10 56.1 6.6 66 12-84 1-70 (209)
81 cd03035 ArsC_Yffb Arsenate Red 98.2 4.9E-06 1.1E-10 50.9 5.5 42 11-54 1-46 (105)
82 cd03047 GST_N_2 GST_N family, 98.2 1.2E-05 2.6E-10 45.4 6.6 69 11-82 1-72 (73)
83 PRK15113 glutathione S-transfe 98.2 1.2E-05 2.6E-10 54.3 7.7 72 9-83 4-80 (214)
84 TIGR02187 GlrX_arch Glutaredox 98.2 5.6E-06 1.2E-10 56.2 5.9 54 10-70 136-195 (215)
85 PF13098 Thioredoxin_2: Thiore 98.2 7.4E-06 1.6E-10 49.6 5.9 68 9-78 7-105 (112)
86 cd02949 TRX_NTR TRX domain, no 98.2 1.5E-05 3.3E-10 47.4 7.0 55 11-72 17-80 (97)
87 cd03044 GST_N_EF1Bgamma GST_N 98.2 1.1E-05 2.5E-10 45.8 6.1 68 12-83 2-73 (75)
88 KOG0406 Glutathione S-transfer 98.1 1.8E-05 3.9E-10 54.6 7.7 70 9-84 8-81 (231)
89 cd02953 DsbDgamma DsbD gamma f 98.1 8.9E-06 1.9E-10 48.8 5.7 60 5-67 7-78 (104)
90 cd02957 Phd_like Phosducin (Ph 98.1 2.6E-05 5.6E-10 47.8 7.3 63 11-81 28-98 (113)
91 cd03057 GST_N_Beta GST_N famil 98.1 2.3E-05 5E-10 44.6 6.5 68 12-83 2-73 (77)
92 cd03033 ArsC_15kD Arsenate Red 98.1 1.3E-05 2.9E-10 49.6 5.4 43 10-54 1-47 (113)
93 PF00085 Thioredoxin: Thioredo 98.1 6.3E-05 1.4E-09 44.3 8.2 55 11-72 21-84 (103)
94 COG4545 Glutaredoxin-related p 98.0 1.9E-05 4.2E-10 45.3 5.1 61 10-74 3-78 (85)
95 cd02956 ybbN ybbN protein fami 98.0 4.6E-05 1E-09 44.9 7.1 55 11-72 16-79 (96)
96 cd02989 Phd_like_TxnDC9 Phosdu 98.0 1.6E-05 3.4E-10 49.0 5.0 57 11-74 26-90 (113)
97 KOG0910 Thioredoxin-like prote 98.0 5.1E-06 1.1E-10 53.7 2.8 55 11-72 65-128 (150)
98 PRK10877 protein disulfide iso 98.0 3E-05 6.5E-10 53.5 6.8 22 56-77 197-219 (232)
99 cd02985 TRX_CDSP32 TRX family, 98.0 6.7E-05 1.4E-09 45.2 7.6 57 11-72 19-84 (103)
100 TIGR00862 O-ClC intracellular 98.0 4.1E-05 8.9E-10 53.0 7.4 62 17-84 17-81 (236)
101 cd02955 SSP411 TRX domain, SSP 98.0 5.2E-05 1.1E-09 47.7 7.2 66 7-75 13-97 (124)
102 cd02987 Phd_like_Phd Phosducin 98.0 2.1E-05 4.5E-10 52.1 5.4 77 11-95 87-175 (175)
103 PLN02473 glutathione S-transfe 98.0 4E-05 8.7E-10 51.4 6.9 70 11-83 3-75 (214)
104 PRK09381 trxA thioredoxin; Pro 98.0 5.4E-05 1.2E-09 45.7 6.8 56 11-73 25-89 (109)
105 cd02948 TRX_NDPK TRX domain, T 98.0 0.0001 2.2E-09 44.3 7.8 53 11-71 21-83 (102)
106 TIGR01068 thioredoxin thioredo 97.9 9.9E-05 2.1E-09 43.3 7.6 55 11-72 18-81 (101)
107 cd02947 TRX_family TRX family; 97.9 4.3E-05 9.3E-10 43.6 5.9 53 11-72 14-76 (93)
108 TIGR03143 AhpF_homolog putativ 97.9 1.4E-05 3.1E-10 61.1 4.7 53 10-71 479-539 (555)
109 cd02965 HyaE HyaE family; HyaE 97.9 4.7E-05 1E-09 47.0 6.1 61 9-74 29-98 (111)
110 PF14595 Thioredoxin_9: Thiore 97.9 4.6E-06 1E-10 52.8 1.5 52 10-67 44-103 (129)
111 cd02950 TxlA TRX-like protein 97.9 5E-05 1.1E-09 48.6 6.3 57 11-72 24-90 (142)
112 cd03046 GST_N_GTT1_like GST_N 97.9 5.9E-05 1.3E-09 42.5 6.0 69 12-84 2-73 (76)
113 cd02984 TRX_PICOT TRX domain, 97.9 7.7E-05 1.7E-09 43.9 6.6 55 11-72 18-81 (97)
114 cd02963 TRX_DnaJ TRX domain, D 97.9 7.6E-05 1.6E-09 45.6 6.4 55 11-72 28-92 (111)
115 PRK15317 alkyl hydroperoxide r 97.9 1.9E-05 4.1E-10 59.9 4.4 55 10-73 119-181 (517)
116 PRK10996 thioredoxin 2; Provis 97.9 0.00013 2.7E-09 46.5 7.4 55 11-72 56-119 (139)
117 cd02951 SoxW SoxW family; SoxW 97.9 3.2E-05 6.9E-10 47.9 4.6 56 11-68 18-92 (125)
118 PTZ00051 thioredoxin; Provisio 97.8 0.00012 2.6E-09 43.2 6.7 56 11-73 22-85 (98)
119 cd03004 PDI_a_ERdj5_C PDIa fam 97.8 0.0001 2.2E-09 44.0 6.4 52 11-69 23-83 (104)
120 cd03043 GST_N_1 GST_N family, 97.8 0.00017 3.6E-09 40.9 6.9 64 15-82 6-72 (73)
121 cd01659 TRX_superfamily Thiore 97.8 7.9E-05 1.7E-09 38.9 5.2 53 11-69 1-61 (69)
122 cd03000 PDI_a_TMX3 PDIa family 97.8 8.2E-05 1.8E-09 44.7 5.7 49 11-66 19-77 (104)
123 TIGR03140 AhpF alkyl hydropero 97.8 2.8E-05 6.1E-10 59.0 4.3 55 10-73 120-182 (515)
124 cd02999 PDI_a_ERp44_like PDIa 97.8 8.5E-05 1.8E-09 44.7 5.6 50 11-66 22-77 (100)
125 PRK10026 arsenate reductase; P 97.8 7.8E-05 1.7E-09 47.9 5.7 46 8-55 1-50 (141)
126 PLN02378 glutathione S-transfe 97.8 0.0001 2.2E-09 49.9 6.6 62 17-84 18-82 (213)
127 cd02961 PDI_a_family Protein D 97.8 0.00012 2.6E-09 42.6 6.1 51 10-67 18-77 (101)
128 cd03002 PDI_a_MPD1_like PDI fa 97.8 8.4E-05 1.8E-09 44.6 5.6 52 11-67 22-80 (109)
129 cd03003 PDI_a_ERdj5_N PDIa fam 97.8 0.0001 2.2E-09 44.0 5.8 54 11-71 22-84 (101)
130 COG3118 Thioredoxin domain-con 97.8 5.8E-05 1.3E-09 53.7 5.4 59 11-76 47-114 (304)
131 cd02994 PDI_a_TMX PDIa family, 97.8 5.1E-05 1.1E-09 45.2 4.4 57 7-70 16-82 (101)
132 cd03006 PDI_a_EFP1_N PDIa fami 97.8 0.00015 3.3E-09 44.8 6.5 54 11-70 33-95 (113)
133 TIGR02187 GlrX_arch Glutaredox 97.7 8.4E-05 1.8E-09 50.5 5.6 56 10-72 22-90 (215)
134 KOG0907 Thioredoxin [Posttrans 97.7 5.3E-05 1.1E-09 46.4 4.1 56 11-71 25-86 (106)
135 PLN02817 glutathione dehydroge 97.7 0.00015 3.2E-09 51.0 6.9 62 17-84 71-135 (265)
136 cd02986 DLP Dim1 family, Dim1- 97.7 8.4E-05 1.8E-09 46.1 4.7 54 14-72 21-81 (114)
137 cd02962 TMX2 TMX2 family; comp 97.7 0.00026 5.7E-09 46.0 7.2 56 11-73 51-122 (152)
138 cd02959 ERp19 Endoplasmic reti 97.7 2.9E-05 6.4E-10 48.1 2.6 55 11-73 23-91 (117)
139 cd02993 PDI_a_APS_reductase PD 97.7 0.00011 2.4E-09 44.6 5.1 52 10-66 24-83 (109)
140 TIGR01262 maiA maleylacetoacet 97.7 9.9E-05 2.2E-09 49.2 5.1 70 13-84 2-74 (210)
141 cd03001 PDI_a_P5 PDIa family, 97.7 0.00029 6.3E-09 41.7 6.3 49 11-66 22-77 (103)
142 KOG0868 Glutathione S-transfer 97.6 0.00018 4E-09 48.0 5.7 74 10-85 5-81 (217)
143 PRK10853 putative reductase; P 97.6 0.00019 4E-09 44.8 5.4 42 11-54 2-47 (118)
144 cd02997 PDI_a_PDIR PDIa family 97.6 0.00014 3E-09 43.2 4.6 57 11-72 21-88 (104)
145 COG1393 ArsC Arsenate reductas 97.6 0.00023 5.1E-09 44.3 5.7 43 10-54 2-48 (117)
146 cd02952 TRP14_like Human TRX-r 97.6 0.00018 3.9E-09 45.0 5.2 55 11-67 25-96 (119)
147 TIGR01616 nitro_assoc nitrogen 97.6 0.00024 5.2E-09 44.8 5.8 43 10-54 2-48 (126)
148 TIGR01126 pdi_dom protein disu 97.6 0.00037 8.1E-09 41.0 6.1 50 11-67 17-75 (102)
149 cd02988 Phd_like_VIAF Phosduci 97.6 0.00024 5.2E-09 47.8 5.5 75 11-95 106-192 (192)
150 cd03034 ArsC_ArsC Arsenate Red 97.6 0.0003 6.5E-09 43.3 5.5 42 11-54 1-46 (112)
151 COG0625 Gst Glutathione S-tran 97.5 0.00029 6.3E-09 47.2 5.9 72 11-86 1-76 (211)
152 PRK10357 putative glutathione 97.5 0.00041 9E-09 46.1 6.6 67 11-83 1-71 (202)
153 TIGR00014 arsC arsenate reduct 97.5 0.00031 6.7E-09 43.4 5.5 43 11-55 1-47 (114)
154 PF07315 DUF1462: Protein of u 97.5 0.00043 9.3E-09 41.0 5.5 71 12-82 1-89 (93)
155 cd03005 PDI_a_ERp46 PDIa famil 97.5 0.00031 6.7E-09 41.5 5.1 55 11-72 20-86 (102)
156 cd02998 PDI_a_ERp38 PDIa famil 97.5 0.00053 1.2E-08 40.5 5.9 51 11-67 22-81 (105)
157 cd02996 PDI_a_ERp44 PDIa famil 97.5 0.00033 7.1E-09 42.3 5.0 53 11-70 22-89 (108)
158 KOG2501 Thioredoxin, nucleored 97.5 0.00088 1.9E-08 43.7 6.9 80 14-95 40-153 (157)
159 PRK13728 conjugal transfer pro 97.4 0.00056 1.2E-08 45.7 6.0 56 10-67 72-142 (181)
160 COG2999 GrxB Glutaredoxin 2 [P 97.4 0.00024 5.2E-09 47.4 4.0 67 12-85 2-72 (215)
161 cd03009 TryX_like_TryX_NRX Try 97.4 0.0018 3.8E-08 40.2 7.8 60 11-72 22-113 (131)
162 PTZ00443 Thioredoxin domain-co 97.4 0.001 2.2E-08 45.8 7.0 55 11-72 56-119 (224)
163 KOG1422 Intracellular Cl- chan 97.4 0.0009 2E-08 45.6 6.6 61 17-83 19-82 (221)
164 PRK13972 GSH-dependent disulfi 97.4 0.0009 1.9E-08 45.0 6.6 70 11-84 2-81 (215)
165 PF13899 Thioredoxin_7: Thiore 97.4 0.0005 1.1E-08 39.7 4.5 49 11-67 21-79 (82)
166 cd03020 DsbA_DsbC_DsbG DsbA fa 97.4 0.0011 2.4E-08 44.3 6.8 27 8-34 78-109 (197)
167 PF02798 GST_N: Glutathione S- 97.4 0.0029 6.2E-08 36.0 7.6 71 10-83 2-75 (76)
168 TIGR02738 TrbB type-F conjugat 97.4 0.001 2.3E-08 43.2 6.4 58 8-67 51-124 (153)
169 PLN02395 glutathione S-transfe 97.3 0.0012 2.7E-08 44.1 7.0 70 11-84 3-75 (215)
170 cd03008 TryX_like_RdCVF Trypar 97.3 0.0021 4.6E-08 41.5 7.6 13 12-24 30-42 (146)
171 PRK11752 putative S-transferas 97.3 0.0013 2.8E-08 46.0 6.8 74 7-84 41-127 (264)
172 TIGR02740 TraF-like TraF-like 97.3 0.00056 1.2E-08 48.2 4.7 56 10-67 169-235 (271)
173 cd03065 PDI_b_Calsequestrin_N 97.2 0.00077 1.7E-08 42.1 4.7 53 12-73 32-101 (120)
174 cd02992 PDI_a_QSOX PDIa family 97.2 0.0016 3.4E-08 40.0 6.0 52 11-67 23-84 (114)
175 cd02995 PDI_a_PDI_a'_C PDIa fa 97.2 0.0014 3E-08 38.7 5.4 49 11-67 22-79 (104)
176 cd03077 GST_N_Alpha GST_N fami 97.2 0.0047 1E-07 35.4 7.4 67 11-83 2-73 (79)
177 COG4837 Uncharacterized protei 97.2 0.004 8.7E-08 37.3 7.0 75 8-82 4-96 (106)
178 cd02964 TryX_like_family Trypa 97.1 0.0053 1.2E-07 38.3 7.5 14 11-24 21-34 (132)
179 PTZ00062 glutaredoxin; Provisi 97.1 0.0016 3.5E-08 44.2 5.3 50 10-74 20-77 (204)
180 PF13728 TraF: F plasmid trans 97.1 0.0006 1.3E-08 46.6 3.2 58 8-67 121-189 (215)
181 cd03010 TlpA_like_DsbE TlpA-li 97.0 0.0062 1.3E-07 37.5 7.1 14 11-24 29-42 (127)
182 PLN00410 U5 snRNP protein, DIM 97.0 0.003 6.5E-08 40.7 5.7 55 11-70 27-89 (142)
183 PF13905 Thioredoxin_8: Thiore 97.0 0.0063 1.4E-07 35.5 6.7 43 11-55 5-56 (95)
184 PRK10542 glutathionine S-trans 96.9 0.0036 7.9E-08 41.4 5.9 70 12-83 2-74 (201)
185 PTZ00102 disulphide isomerase; 96.9 0.0034 7.3E-08 46.8 6.2 53 11-70 53-117 (477)
186 TIGR02661 MauD methylamine deh 96.9 0.0056 1.2E-07 40.8 6.7 14 11-24 78-91 (189)
187 KOG0908 Thioredoxin-like prote 96.9 0.0016 3.5E-08 45.6 4.0 57 11-72 25-87 (288)
188 TIGR00424 APS_reduc 5'-adenyly 96.8 0.0027 5.9E-08 48.0 5.3 53 11-70 375-439 (463)
189 PRK03147 thiol-disulfide oxido 96.8 0.014 3.1E-07 37.6 8.0 60 11-72 65-152 (173)
190 PRK11657 dsbG disulfide isomer 96.8 0.0072 1.6E-07 42.2 6.8 15 10-24 120-134 (251)
191 cd03078 GST_N_Metaxin1_like GS 96.8 0.01 2.2E-07 33.7 6.3 55 17-84 14-71 (73)
192 TIGR01130 ER_PDI_fam protein d 96.8 0.0046 1E-07 45.6 5.9 54 11-71 22-87 (462)
193 PLN02309 5'-adenylylsulfate re 96.7 0.0034 7.3E-08 47.4 4.8 53 10-67 368-428 (457)
194 PRK00293 dipZ thiol:disulfide 96.7 0.0067 1.4E-07 47.0 6.5 57 11-71 478-547 (571)
195 cd02972 DsbA_family DsbA famil 96.7 0.0088 1.9E-07 34.2 5.6 14 11-24 1-14 (98)
196 KOG4244 Failed axon connection 96.5 0.0081 1.8E-07 42.3 5.5 58 10-80 45-112 (281)
197 PF03960 ArsC: ArsC family; I 96.5 0.0064 1.4E-07 37.1 4.4 40 14-55 1-44 (110)
198 cd02960 AGR Anterior Gradient 96.4 0.0034 7.4E-08 39.8 3.0 14 11-24 27-40 (130)
199 PF06764 DUF1223: Protein of u 96.4 0.0046 9.9E-08 42.0 3.6 67 11-77 2-87 (202)
200 cd03011 TlpA_like_ScsD_MtbDsbE 96.4 0.0075 1.6E-07 36.8 4.3 15 10-24 23-37 (123)
201 cd03075 GST_N_Mu GST_N family, 96.4 0.031 6.7E-07 32.2 6.6 62 20-83 13-79 (82)
202 TIGR02739 TraF type-F conjugat 96.3 0.0041 9E-08 43.7 3.2 58 8-67 151-219 (256)
203 cd02966 TlpA_like_family TlpA- 96.3 0.029 6.4E-07 32.8 6.6 15 10-24 22-36 (116)
204 PRK13703 conjugal pilus assemb 96.3 0.0042 9.1E-08 43.4 3.0 57 8-67 144-212 (248)
205 PTZ00057 glutathione s-transfe 96.3 0.029 6.2E-07 37.5 7.0 70 10-83 4-80 (205)
206 PRK15412 thiol:disulfide inter 96.3 0.018 3.9E-07 38.1 5.9 14 11-24 72-85 (185)
207 PF06953 ArsD: Arsenical resis 96.2 0.013 2.8E-07 36.9 4.7 52 25-79 35-92 (123)
208 COG3019 Predicted metal-bindin 96.2 0.052 1.1E-06 34.9 7.4 70 8-86 25-104 (149)
209 cd03012 TlpA_like_DipZ_like Tl 96.2 0.041 9E-07 33.9 7.0 14 11-24 27-40 (126)
210 KOG0867 Glutathione S-transfer 96.1 0.022 4.8E-07 39.0 5.8 72 10-84 2-76 (226)
211 cd02982 PDI_b'_family Protein 96.0 0.025 5.4E-07 33.3 5.2 51 10-67 15-74 (103)
212 cd02967 mauD Methylamine utili 96.0 0.039 8.3E-07 33.1 6.1 14 11-24 25-38 (114)
213 cd03007 PDI_a_ERp29_N PDIa fam 96.0 0.065 1.4E-06 33.3 7.1 61 6-70 15-91 (116)
214 KOG0190 Protein disulfide isom 96.0 0.017 3.6E-07 44.1 5.2 60 5-71 38-111 (493)
215 TIGR00385 dsbE periplasmic pro 96.0 0.05 1.1E-06 35.5 7.0 14 11-24 67-80 (173)
216 cd02958 UAS UAS family; UAS is 95.9 0.021 4.6E-07 34.7 4.4 57 11-72 21-91 (114)
217 cd03079 GST_N_Metaxin2 GST_N f 95.8 0.17 3.6E-06 29.0 7.7 62 11-84 11-73 (74)
218 PF08534 Redoxin: Redoxin; In 95.6 0.096 2.1E-06 32.8 6.7 14 11-24 32-46 (146)
219 COG5494 Predicted thioredoxin/ 95.5 0.026 5.7E-07 38.7 4.2 66 10-82 12-84 (265)
220 COG2143 Thioredoxin-related pr 95.1 0.068 1.5E-06 35.2 5.0 61 11-73 46-130 (182)
221 TIGR01130 ER_PDI_fam protein d 95.1 0.023 4.9E-07 41.9 3.2 48 11-67 368-425 (462)
222 PF06110 DUF953: Eukaryotic pr 94.9 0.037 8E-07 34.6 3.1 50 15-67 34-95 (119)
223 PTZ00102 disulphide isomerase; 94.8 0.04 8.6E-07 41.1 3.8 50 11-67 379-437 (477)
224 PF00578 AhpC-TSA: AhpC/TSA fa 94.8 0.12 2.7E-06 31.2 5.4 14 11-24 29-43 (124)
225 cd02969 PRX_like1 Peroxiredoxi 94.8 0.18 3.9E-06 32.7 6.4 14 11-24 29-42 (171)
226 smart00594 UAS UAS domain. 94.8 0.13 2.7E-06 31.8 5.4 52 11-67 31-92 (122)
227 PF02114 Phosducin: Phosducin; 94.7 0.014 3.1E-07 41.2 1.1 82 11-100 150-243 (265)
228 PF10568 Tom37: Outer mitochon 94.5 0.23 4.9E-06 28.2 5.6 51 19-82 14-71 (72)
229 PRK14018 trifunctional thiored 94.3 0.32 7E-06 37.5 7.7 14 11-24 60-73 (521)
230 TIGR01626 ytfJ_HI0045 conserve 94.3 0.19 4.2E-06 33.7 5.7 34 10-43 62-105 (184)
231 PTZ00256 glutathione peroxidas 94.2 0.14 3E-06 33.8 4.9 13 12-24 46-58 (183)
232 KOG4277 Uncharacterized conser 94.1 0.072 1.6E-06 38.7 3.6 55 12-71 48-111 (468)
233 PLN02919 haloacid dehalogenase 93.9 0.36 7.7E-06 40.2 7.6 14 11-24 424-437 (1057)
234 PHA03075 glutaredoxin-like pro 93.6 0.14 3E-06 32.0 3.6 32 9-42 3-37 (123)
235 PF03190 Thioredox_DsbH: Prote 93.3 0.29 6.4E-06 32.2 5.1 56 14-72 44-116 (163)
236 cd02968 SCO SCO (an acronym fo 93.3 0.24 5.1E-06 30.7 4.6 14 11-24 26-40 (142)
237 TIGR02540 gpx7 putative glutat 93.0 0.25 5.4E-06 31.5 4.5 14 11-24 26-39 (153)
238 cd00340 GSH_Peroxidase Glutath 93.0 0.21 4.5E-06 31.8 4.1 13 11-24 26-38 (152)
239 KOG3425 Uncharacterized conser 92.9 0.11 2.3E-06 32.7 2.5 9 16-24 42-50 (128)
240 cd02970 PRX_like2 Peroxiredoxi 92.8 0.47 1E-05 29.4 5.5 14 11-24 27-41 (149)
241 cd03022 DsbA_HCCA_Iso DsbA fam 92.8 0.23 5E-06 32.4 4.1 25 57-81 163-187 (192)
242 PF13462 Thioredoxin_4: Thiore 92.8 0.28 6E-06 31.0 4.4 23 57-79 132-154 (162)
243 KOG0191 Thioredoxin/protein di 92.7 0.31 6.7E-06 35.8 5.1 52 9-67 49-107 (383)
244 cd03018 PRX_AhpE_like Peroxire 92.7 0.26 5.6E-06 30.9 4.2 10 15-24 37-46 (149)
245 KOG3171 Conserved phosducin-li 92.7 0.36 7.9E-06 33.4 5.0 45 57-101 207-257 (273)
246 cd05295 MDH_like Malate dehydr 91.9 0.69 1.5E-05 35.2 6.2 64 16-83 1-82 (452)
247 KOG1695 Glutathione S-transfer 91.8 1.3 2.8E-05 30.3 6.9 69 9-83 2-73 (206)
248 PLN02399 phospholipid hydroper 91.6 0.57 1.2E-05 32.6 5.1 14 11-24 103-116 (236)
249 COG0526 TrxA Thiol-disulfide i 91.6 1.5 3.3E-05 24.8 8.0 10 15-24 40-49 (127)
250 PLN02412 probable glutathione 91.6 0.54 1.2E-05 30.6 4.8 14 11-24 33-46 (167)
251 COG4232 Thiol:disulfide interc 91.4 0.65 1.4E-05 36.2 5.6 55 10-67 476-540 (569)
252 cd03023 DsbA_Com1_like DsbA fa 91.1 0.16 3.5E-06 31.6 1.9 17 8-24 6-22 (154)
253 PTZ00056 glutathione peroxidas 90.9 0.38 8.3E-06 32.3 3.6 14 11-24 43-56 (199)
254 KOG4420 Uncharacterized conser 90.9 0.22 4.7E-06 35.5 2.4 71 11-84 27-100 (325)
255 TIGR03759 conj_TIGR03759 integ 90.6 0.68 1.5E-05 31.5 4.5 46 7-54 108-156 (200)
256 KOG0912 Thiol-disulfide isomer 90.2 0.64 1.4E-05 33.9 4.4 62 6-72 10-85 (375)
257 PF04134 DUF393: Protein of un 90.1 0.74 1.6E-05 27.7 4.1 67 13-85 1-77 (114)
258 PF01323 DSBA: DSBA-like thior 90.1 0.27 5.9E-06 32.0 2.3 53 25-81 129-188 (193)
259 PF13462 Thioredoxin_4: Thiore 90.0 0.24 5.1E-06 31.3 1.9 33 9-43 14-57 (162)
260 COG5429 Uncharacterized secret 89.9 0.51 1.1E-05 33.0 3.6 63 11-75 45-128 (261)
261 PF11009 DUF2847: Protein of u 89.8 2.2 4.7E-05 26.1 5.9 61 8-73 19-92 (105)
262 cd03023 DsbA_Com1_like DsbA fa 89.8 0.73 1.6E-05 28.6 4.1 25 57-81 125-149 (154)
263 cd03017 PRX_BCP Peroxiredoxin 89.5 0.66 1.4E-05 28.6 3.6 9 16-24 33-41 (140)
264 COG3634 AhpF Alkyl hydroperoxi 89.2 0.74 1.6E-05 34.4 4.2 55 12-73 121-181 (520)
265 cd02971 PRX_family Peroxiredox 89.0 1.1 2.4E-05 27.5 4.5 15 10-24 24-40 (140)
266 cd03019 DsbA_DsbA DsbA family, 88.3 0.7 1.5E-05 29.6 3.3 17 8-24 16-32 (178)
267 PRK13190 putative peroxiredoxi 88.2 0.61 1.3E-05 31.4 3.0 14 11-24 30-45 (202)
268 KOG0191 Thioredoxin/protein di 87.9 1.7 3.7E-05 32.0 5.4 49 10-66 165-223 (383)
269 cd03014 PRX_Atyp2cys Peroxired 87.9 2.2 4.7E-05 26.5 5.3 15 10-24 28-44 (143)
270 cd03016 PRX_1cys Peroxiredoxin 87.8 0.68 1.5E-05 31.1 3.1 14 11-24 28-43 (203)
271 PRK11509 hydrogenase-1 operon 87.8 2.3 5E-05 27.0 5.3 33 37-74 72-106 (132)
272 TIGR03137 AhpC peroxiredoxin. 87.7 0.72 1.6E-05 30.5 3.1 15 10-24 33-49 (187)
273 cd03015 PRX_Typ2cys Peroxiredo 87.5 0.87 1.9E-05 29.6 3.4 15 10-24 31-47 (173)
274 PRK10954 periplasmic protein d 87.2 0.84 1.8E-05 30.7 3.2 21 57-77 163-183 (207)
275 PRK00522 tpx lipid hydroperoxi 86.6 2.9 6.3E-05 27.1 5.5 14 11-24 48-62 (167)
276 PRK09437 bcp thioredoxin-depen 86.1 1.7 3.8E-05 27.4 4.1 9 16-24 40-48 (154)
277 PF00282 Pyridoxal_deC: Pyrido 84.7 1.7 3.7E-05 32.0 4.0 73 8-82 139-217 (373)
278 PF03227 GILT: Gamma interfero 84.3 0.8 1.7E-05 27.8 1.9 15 10-24 2-16 (108)
279 KOG0190 Protein disulfide isom 84.0 0.4 8.7E-06 36.8 0.5 23 11-33 388-413 (493)
280 COG2761 FrnE Predicted dithiol 83.1 1.4 3.1E-05 30.5 2.8 16 9-24 6-21 (225)
281 PRK13599 putative peroxiredoxi 82.7 1.8 3.9E-05 29.5 3.2 11 14-24 36-46 (215)
282 PF01323 DSBA: DSBA-like thior 81.9 1.4 3E-05 28.6 2.4 32 10-43 1-40 (193)
283 PRK10606 btuE putative glutath 81.6 3.3 7.3E-05 27.6 4.2 14 11-24 29-42 (183)
284 PF10865 DUF2703: Domain of un 81.3 3.5 7.5E-05 25.8 3.9 45 18-72 14-72 (120)
285 KOG1672 ATP binding protein [P 81.3 0.54 1.2E-05 32.0 0.3 82 9-97 85-180 (211)
286 PRK13189 peroxiredoxin; Provis 81.0 2.3 4.9E-05 29.1 3.3 14 11-24 38-53 (222)
287 TIGR01162 purE phosphoribosyla 80.9 9.8 0.00021 24.9 6.0 70 12-83 4-100 (156)
288 COG0041 PurE Phosphoribosylcar 80.6 13 0.00027 24.5 6.3 70 12-83 8-104 (162)
289 cd03024 DsbA_FrnE DsbA family, 77.9 1.9 4.1E-05 28.3 2.1 22 57-78 171-193 (201)
290 PRK13191 putative peroxiredoxi 77.8 3.2 7E-05 28.2 3.2 11 14-24 41-51 (215)
291 COG1999 Uncharacterized protei 76.6 5.4 0.00012 27.1 4.0 56 11-69 71-139 (207)
292 cd03019 DsbA_DsbA DsbA family, 75.2 6.4 0.00014 25.1 4.0 19 57-75 139-157 (178)
293 PF11287 DUF3088: Protein of u 74.7 5.9 0.00013 24.5 3.4 44 18-69 23-76 (112)
294 KOG0629 Glutamate decarboxylas 74.6 33 0.00071 26.5 7.9 74 7-82 194-276 (510)
295 COG1651 DsbG Protein-disulfide 73.3 9.5 0.00021 25.9 4.7 16 9-24 86-101 (244)
296 PLN02590 probable tyrosine dec 73.3 25 0.00055 27.5 7.3 72 9-82 228-310 (539)
297 KOG1731 FAD-dependent sulfhydr 72.9 1.8 4E-05 33.9 1.1 57 10-67 60-122 (606)
298 COG1331 Highly conserved prote 72.1 13 0.00028 29.8 5.5 55 14-70 50-120 (667)
299 KOG0913 Thiol-disulfide isomer 71.6 0.63 1.4E-05 32.5 -1.5 52 11-71 43-106 (248)
300 KOG3414 Component of the U4/U6 71.6 6.2 0.00013 25.2 3.0 52 14-72 30-90 (142)
301 PLN02880 tyrosine decarboxylas 71.6 30 0.00066 26.5 7.4 73 9-81 180-261 (490)
302 PRK15000 peroxidase; Provision 70.1 7.5 0.00016 26.1 3.5 15 10-24 36-52 (200)
303 PF06053 DUF929: Domain of unk 67.2 3.7 8E-05 28.9 1.5 21 11-31 62-89 (249)
304 KOG0914 Thioredoxin-like prote 66.5 6.4 0.00014 27.5 2.6 59 11-72 148-218 (265)
305 PF15643 Tox-PL-2: Papain fold 66.5 16 0.00035 22.1 4.0 24 18-43 20-47 (100)
306 COG1651 DsbG Protein-disulfide 66.2 9.4 0.0002 26.0 3.4 22 57-78 211-232 (244)
307 PF04566 RNA_pol_Rpb2_4: RNA p 65.5 4.9 0.00011 22.1 1.6 15 65-79 1-15 (63)
308 KOG3160 Gamma-interferon induc 64.6 3.8 8.3E-05 28.3 1.2 16 9-24 41-56 (220)
309 PF08599 Nbs1_C: DNA damage re 64.2 6.7 0.00014 21.8 1.9 32 57-94 13-45 (65)
310 cd03025 DsbA_FrnE_like DsbA fa 64.2 5.7 0.00012 25.8 2.0 15 10-24 2-16 (193)
311 PTZ00253 tryparedoxin peroxida 64.2 9.1 0.0002 25.5 3.0 25 16-42 46-80 (199)
312 cd02991 UAS_ETEA UAS family, E 62.7 32 0.00068 21.1 5.0 45 18-67 32-83 (116)
313 TIGR03439 methyl_EasF probable 62.5 30 0.00065 25.2 5.5 60 17-82 83-148 (319)
314 cd03022 DsbA_HCCA_Iso DsbA fam 61.8 9.6 0.00021 24.6 2.7 24 11-34 1-31 (192)
315 PRK10954 periplasmic protein d 60.7 6.2 0.00013 26.4 1.7 17 8-24 38-54 (207)
316 PF07449 HyaE: Hydrogenase-1 e 60.1 26 0.00056 21.4 4.2 32 47-78 68-101 (107)
317 PF14237 DUF4339: Domain of un 58.5 17 0.00037 18.2 2.8 25 65-89 4-30 (45)
318 PTZ00137 2-Cys peroxiredoxin; 57.5 18 0.0004 25.6 3.6 15 10-24 100-116 (261)
319 TIGR03799 NOD_PanD_pyr putativ 57.4 75 0.0016 24.7 7.2 72 9-82 208-288 (522)
320 PRK10382 alkyl hydroperoxide r 56.8 29 0.00062 23.1 4.3 15 10-24 33-49 (187)
321 PF07511 DUF1525: Protein of u 55.5 19 0.00041 22.3 3.1 26 57-82 79-105 (114)
322 KOG1734 Predicted RING-contain 53.8 6.3 0.00014 28.3 0.8 10 15-24 269-278 (328)
323 PF02630 SCO1-SenC: SCO1/SenC; 53.8 54 0.0012 21.4 5.2 45 11-55 56-112 (174)
324 PF03691 UPF0167: Uncharacteri 53.4 16 0.00034 24.5 2.6 75 18-95 51-137 (176)
325 COG0424 Maf Nucleotide-binding 52.5 71 0.0015 21.7 5.8 27 13-41 5-31 (193)
326 KOG4700 Uncharacterized homolo 52.0 17 0.00038 24.5 2.6 35 49-83 101-136 (207)
327 TIGR03757 conj_TIGR03757 integ 49.2 25 0.00054 21.8 2.8 25 57-81 80-105 (113)
328 cd03021 DsbA_GSTK DsbA family, 48.5 27 0.00058 23.3 3.2 25 10-34 2-33 (209)
329 cd03082 TRX_Fd_NuoE_W_FDH_beta 45.2 39 0.00085 18.8 3.1 24 60-83 45-70 (72)
330 COG3011 Predicted thiol-disulf 44.7 83 0.0018 20.2 7.4 70 6-82 5-83 (137)
331 PF11399 DUF3192: Protein of u 43.9 19 0.00042 21.9 1.8 14 61-74 81-94 (102)
332 TIGR02808 short_TIGR02808 cons 43.3 12 0.00025 18.9 0.6 21 49-69 4-24 (42)
333 PF13353 Fer4_12: 4Fe-4S singl 39.5 24 0.00052 21.5 1.8 15 10-24 7-24 (139)
334 PLN02907 glutamate-tRNA ligase 39.0 1.5E+02 0.0033 24.2 6.5 56 11-84 3-61 (722)
335 PRK15348 type III secretion sy 38.9 33 0.00071 24.2 2.5 72 25-98 38-123 (249)
336 cd02127 PA_hPAP21_like PA_hPAP 38.2 59 0.0013 19.9 3.4 71 8-86 34-110 (118)
337 COG3917 NahD 2-hydroxychromene 36.7 1E+02 0.0022 21.0 4.4 36 47-82 156-197 (203)
338 TIGR03190 benz_CoA_bzdN benzoy 36.5 80 0.0017 23.3 4.4 24 47-74 333-356 (377)
339 PLN02263 serine decarboxylase 36.2 1.7E+02 0.0038 22.6 6.2 66 12-82 180-251 (470)
340 PRK02141 Maf-like protein; Rev 35.3 1.1E+02 0.0024 20.9 4.6 37 1-41 1-37 (207)
341 KOG2672 Lipoate synthase [Coen 35.1 92 0.002 22.8 4.3 76 8-85 111-214 (360)
342 COG0602 NrdG Organic radical a 34.9 24 0.00052 24.0 1.3 80 10-98 22-111 (212)
343 PF03470 zf-XS: XS zinc finger 34.3 8.3 0.00018 19.8 -0.8 6 19-24 1-6 (43)
344 KOG4598 Putative ubiquitin-spe 34.1 49 0.0011 27.3 3.0 44 7-59 1053-1097(1203)
345 KOG3028 Translocase of outer m 33.8 1.9E+02 0.0042 21.2 6.8 63 10-84 3-73 (313)
346 COG4445 MiaE Hydroxylase for s 33.3 5.8 0.00013 26.5 -1.8 58 25-91 81-138 (203)
347 PF15616 TerY-C: TerY-C metal 33.3 11 0.00025 23.9 -0.4 12 13-24 74-85 (131)
348 TIGR02995 ectoine_ehuB ectoine 32.9 38 0.00082 23.3 2.1 25 78-102 243-267 (275)
349 TIGR00778 ahpD_dom alkylhydrop 32.8 46 0.001 16.6 2.0 18 17-34 19-40 (50)
350 PF14424 Toxin-deaminase: The 32.8 29 0.00063 22.0 1.4 26 9-34 97-123 (133)
351 PF11324 DUF3126: Protein of u 32.6 93 0.002 17.2 3.8 28 47-74 3-41 (63)
352 PF09574 DUF2374: Protein of 32.4 13 0.00028 18.8 -0.2 21 49-69 4-24 (42)
353 PF09034 TRADD_N: TRADD, N-ter 32.3 54 0.0012 20.2 2.4 34 61-94 17-52 (111)
354 TIGR03811 tyr_de_CO2_Ent tyros 32.1 2.7E+02 0.0058 22.3 7.2 81 12-95 224-311 (608)
355 COG5309 Exo-beta-1,3-glucanase 32.0 1.5E+02 0.0032 21.6 4.9 85 9-96 77-170 (305)
356 PF12728 HTH_17: Helix-turn-he 31.8 75 0.0016 15.9 4.4 33 53-85 18-50 (51)
357 PF13743 Thioredoxin_5: Thiore 31.7 67 0.0014 21.0 3.0 12 13-24 2-13 (176)
358 PF11238 DUF3039: Protein of u 31.5 32 0.00069 18.8 1.2 12 17-28 45-56 (58)
359 PLN03032 serine decarboxylase; 31.2 2.2E+02 0.0048 21.1 5.9 65 12-81 113-183 (374)
360 PF13364 BetaGal_dom4_5: Beta- 31.1 42 0.00092 20.3 1.9 19 58-76 60-78 (111)
361 PF05988 DUF899: Bacterial pro 30.9 1.1E+02 0.0024 21.1 4.0 46 17-69 83-138 (211)
362 cd03715 RT_ZFREV_like RT_ZFREV 30.8 34 0.00074 22.8 1.5 39 64-102 157-195 (210)
363 COG0703 AroK Shikimate kinase 30.2 59 0.0013 21.6 2.5 31 8-42 2-35 (172)
364 COG2239 MgtE Mg/Co/Ni transpor 30.1 1.3E+02 0.0028 23.2 4.6 57 38-95 207-265 (451)
365 TIGR00734 hisAF_rel hisA/hisF 30.0 1.8E+02 0.0039 19.8 5.2 56 25-85 149-206 (221)
366 PF07627 PSCyt3: Protein of un 29.8 28 0.00061 21.0 0.9 19 16-34 69-87 (101)
367 PF11008 DUF2846: Protein of u 29.8 45 0.00098 20.2 1.9 17 59-75 39-55 (117)
368 cd04816 PA_SaNapH_like PA_SaNa 29.6 1.2E+02 0.0026 18.4 3.7 27 8-34 43-71 (122)
369 PF08308 PEGA: PEGA domain; I 29.3 44 0.00095 18.1 1.6 11 64-74 14-24 (71)
370 PF03575 Peptidase_S51: Peptid 29.3 75 0.0016 20.1 2.9 57 25-93 8-64 (154)
371 COG2501 S4-like RNA binding pr 29.0 51 0.0011 18.8 1.8 14 86-99 13-26 (73)
372 KOG3027 Mitochondrial outer me 28.4 1.6E+02 0.0034 20.7 4.4 69 12-92 30-100 (257)
373 PF09369 DUF1998: Domain of un 28.2 34 0.00073 19.4 1.0 36 59-94 32-67 (84)
374 PF00614 PLDc: Phospholipase D 28.2 53 0.0012 14.9 1.5 13 64-76 9-23 (28)
375 TIGR01702 CO_DH_cata carbon-mo 28.0 53 0.0012 26.3 2.3 35 62-96 245-279 (621)
376 PF05949 DUF881: Bacterial pro 28.0 89 0.0019 20.0 3.0 35 63-97 79-123 (149)
377 PF10122 Mu-like_Com: Mu-like 27.7 51 0.0011 17.5 1.5 12 18-29 6-17 (51)
378 KOG2792 Putative cytochrome C 27.3 1.3E+02 0.0028 21.6 3.9 45 11-55 143-200 (280)
379 PF00571 CBS: CBS domain CBS d 26.9 94 0.002 15.5 2.7 35 39-74 11-45 (57)
380 PF14437 MafB19-deam: MafB19-l 26.5 68 0.0015 20.8 2.3 25 10-34 101-130 (146)
381 smart00536 AXH domain in Ataxi 26.5 52 0.0011 20.5 1.7 28 7-34 74-102 (116)
382 PF08859 DGC: DGC domain; Int 26.1 97 0.0021 18.8 2.8 21 14-34 55-77 (110)
383 PRK08351 DNA-directed RNA poly 26.1 21 0.00047 19.6 -0.1 27 1-28 1-28 (61)
384 TIGR01764 excise DNA binding d 25.8 90 0.002 14.9 4.4 31 53-83 18-48 (49)
385 PRK00234 Maf-like protein; Rev 25.7 1.5E+02 0.0032 19.9 3.9 28 10-41 3-30 (192)
386 PRK00884 Maf-like protein; Rev 25.7 1.5E+02 0.0033 19.9 4.0 28 10-41 3-30 (194)
387 cd03013 PRX5_like Peroxiredoxi 25.6 1.8E+02 0.0038 18.5 4.1 16 9-24 30-47 (155)
388 KOG3460 Small nuclear ribonucl 25.5 90 0.0019 18.3 2.4 15 57-71 66-80 (91)
389 PF07908 D-aminoacyl_C: D-amin 25.4 57 0.0012 16.7 1.5 15 60-74 18-32 (48)
390 PF02724 CDC45: CDC45-like pro 25.3 3.3E+02 0.0073 21.8 6.3 65 10-83 1-71 (622)
391 PF14998 Ripply: Transcription 25.2 76 0.0016 18.8 2.1 37 7-44 40-82 (87)
392 KOG0371 Serine/threonine prote 25.1 1.2E+02 0.0027 21.9 3.5 26 62-88 60-85 (319)
393 PRK00766 hypothetical protein; 25.0 93 0.002 21.1 2.8 46 30-77 42-87 (194)
394 TIGR03143 AhpF_homolog putativ 24.9 2.5E+02 0.0054 21.8 5.5 48 11-67 370-425 (555)
395 PF04512 Baculo_PEP_N: Baculov 24.7 99 0.0021 18.6 2.6 26 60-85 3-29 (97)
396 COG4020 Uncharacterized protei 24.7 61 0.0013 23.4 1.9 19 59-77 163-181 (332)
397 KOG0592 3-phosphoinositide-dep 24.6 74 0.0016 25.3 2.5 60 25-99 111-173 (604)
398 PF07293 DUF1450: Protein of u 24.5 1.3E+02 0.0029 17.2 3.1 17 59-75 43-59 (78)
399 COG5204 SPT4 Transcription elo 24.4 18 0.00039 21.9 -0.6 21 12-32 22-42 (112)
400 PF00004 AAA: ATPase family as 24.3 1.2E+02 0.0027 17.7 3.1 24 11-34 1-27 (132)
401 PLN02446 (5-phosphoribosyl)-5- 24.1 1.4E+02 0.003 21.3 3.6 33 51-85 197-229 (262)
402 PLN02948 phosphoribosylaminoim 24.0 3.1E+02 0.0068 21.7 5.9 68 15-84 419-513 (577)
403 COG1905 NuoE NADH:ubiquinone o 23.9 30 0.00065 22.8 0.3 64 8-77 77-146 (160)
404 PRK10670 hypothetical protein; 23.8 1.2E+02 0.0027 19.5 3.2 17 25-43 7-23 (159)
405 KOG2665 Predicted FAD-dependen 23.4 1.5E+02 0.0033 22.3 3.8 74 13-100 101-188 (453)
406 PRK00032 Maf-like protein; Rev 23.4 1.8E+02 0.0038 19.5 3.9 29 10-42 3-31 (190)
407 PF00763 THF_DHG_CYH: Tetrahyd 23.0 1.9E+02 0.0041 17.6 4.7 40 25-66 53-92 (117)
408 TIGR01405 polC_Gram_pos DNA po 22.9 98 0.0021 26.9 3.1 62 18-87 710-784 (1213)
409 cd04731 HisF The cyclase subun 22.8 2.3E+02 0.005 19.2 4.6 57 25-85 35-93 (243)
410 TIGR00400 mgtE Mg2+ transporte 22.7 3.3E+02 0.007 20.7 5.6 48 48-96 216-265 (449)
411 TIGR03865 PQQ_CXXCW PQQ-depend 22.6 1.3E+02 0.0029 19.3 3.2 25 8-32 116-143 (162)
412 COG1707 ACT domain-containing 22.5 2.4E+02 0.0051 19.1 4.3 49 25-75 105-155 (218)
413 cd02130 PA_ScAPY_like PA_ScAPY 22.4 1.9E+02 0.0041 17.4 3.7 70 8-85 44-115 (122)
414 PRK13886 conjugal transfer pro 22.3 2.8E+02 0.0061 19.4 4.9 33 62-96 82-114 (241)
415 PF09248 DUF1965: Domain of un 22.1 1.7E+02 0.0037 16.7 3.1 35 61-95 26-60 (74)
416 TIGR02491 NrdG anaerobic ribon 22.1 1.9E+02 0.0042 18.3 3.8 15 10-24 17-34 (154)
417 PF02966 DIM1: Mitosis protein 22.1 49 0.0011 21.1 1.0 35 9-43 20-63 (133)
418 KOG4022 Dihydropteridine reduc 22.1 2.6E+02 0.0057 18.9 6.6 79 7-87 2-99 (236)
419 PF02662 FlpD: Methyl-viologen 22.0 2.1E+02 0.0045 17.7 6.2 81 10-97 1-92 (124)
420 PRK14367 Maf-like protein; Pro 21.9 1.9E+02 0.0041 19.6 3.9 28 10-41 3-30 (202)
421 PRK07571 bidirectional hydroge 21.8 60 0.0013 21.5 1.4 19 59-77 139-157 (169)
422 PRK01839 Maf-like protein; Rev 21.8 2.4E+02 0.0052 19.2 4.4 30 6-39 7-36 (209)
423 KOG2603 Oligosaccharyltransfer 21.7 70 0.0015 23.5 1.8 14 11-24 64-81 (331)
424 PF06224 HTH_42: Winged helix 21.7 92 0.002 22.1 2.5 19 58-76 274-292 (327)
425 COG0076 GadB Glutamate decarbo 21.7 2.6E+02 0.0056 21.5 4.9 65 12-82 159-230 (460)
426 KOG2863 RNA lariat debranching 21.4 44 0.00095 25.3 0.7 12 60-71 74-85 (456)
427 COG2516 Biotin synthase-relate 21.4 75 0.0016 23.5 1.9 50 13-66 284-338 (339)
428 PF00154 RecA: recA bacterial 21.2 3.2E+02 0.0068 20.1 5.1 59 9-69 81-139 (322)
429 PRK14368 Maf-like protein; Pro 20.9 1.7E+02 0.0037 19.7 3.5 31 8-42 4-34 (193)
430 TIGR00172 maf MAF protein. Thi 20.9 2.3E+02 0.0049 18.9 4.1 30 9-42 3-32 (183)
431 PF07827 KNTase_C: KNTase C-te 20.8 59 0.0013 21.0 1.1 19 71-89 91-109 (143)
432 cd03081 TRX_Fd_NuoE_FDH_gamma 20.7 80 0.0017 17.8 1.6 17 60-76 53-69 (80)
433 KOG3490 Transcription elongati 20.7 55 0.0012 20.1 1.0 20 11-31 20-39 (111)
434 PF04592 SelP_N: Selenoprotein 20.5 3.2E+02 0.0069 19.3 5.7 44 11-56 30-85 (238)
435 cd06387 PBP1_iGluR_AMPA_GluR3 20.5 3.5E+02 0.0076 19.9 5.3 72 9-82 63-147 (372)
436 PF02837 Glyco_hydro_2_N: Glyc 20.2 86 0.0019 19.7 1.9 19 57-75 92-110 (167)
437 PF01257 2Fe-2S_thioredx: Thio 20.1 76 0.0017 20.1 1.6 17 60-76 117-133 (145)
438 PF05301 Mec-17: Touch recepto 20.0 2E+02 0.0044 18.0 3.4 37 25-65 71-108 (120)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=100.00 E-value=2.8e-32 Score=165.71 Aligned_cols=94 Identities=34% Similarity=0.521 Sum_probs=88.3
Q ss_pred cccccCCceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHH
Q 034150 3 ECAVFVNEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVV 79 (102)
Q Consensus 3 e~~i~~~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~ 79 (102)
...|+.++|+||++++||||++ +|+++|++|+ +++||.+++..++++++.+++|++|+|+|||+|++|||++++.
T Consensus 2 ~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~--~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~ 79 (99)
T TIGR02189 2 RRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPA--VHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVM 79 (99)
T ss_pred hhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCE--EEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHH
Confidence 3568899999999999999999 9999999999 9999988777888899999999999999999999999999999
Q ss_pred HHHHCCCcHHHHHhcCchh
Q 034150 80 EKHQGGKLVPLLRDAGALA 98 (102)
Q Consensus 80 ~~~~~g~L~~~l~~~g~~~ 98 (102)
+++++|+|+++|+++|+++
T Consensus 80 ~l~~~G~L~~~l~~~~~~~ 98 (99)
T TIGR02189 80 ALHISGSLVPMLKQAGALW 98 (99)
T ss_pred HHHHcCCHHHHHHHhCccc
Confidence 9999999999999999873
No 2
>PHA03050 glutaredoxin; Provisional
Probab=99.97 E-value=1.7e-31 Score=164.51 Aligned_cols=94 Identities=21% Similarity=0.320 Sum_probs=86.7
Q ss_pred ccccCCceEEecCCCCHHHHH---HHhhCCC---CCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHH
Q 034150 4 CAVFVNEACCPPLESCAFCLV---LFSSTNN---KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 77 (102)
Q Consensus 4 ~~i~~~~vvvy~~~~Cp~C~~---~L~~~~i---~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~ 77 (102)
..+.+++|+||+++|||||++ +|+++++ +|+ +++++...++.++++++.+.+|+++||+|||||++|||+++
T Consensus 8 ~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~--~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~dd 85 (108)
T PHA03050 8 QRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYE--IVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSD 85 (108)
T ss_pred HHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcE--EEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHH
Confidence 446789999999999999999 9999999 688 88998755568899999999999999999999999999999
Q ss_pred HHHHHHCCCcHHHHHhcCchhh
Q 034150 78 VVEKHQGGKLVPLLRDAGALAL 99 (102)
Q Consensus 78 l~~~~~~g~L~~~l~~~g~~~~ 99 (102)
+.+++++|+|.++|+.+|+++.
T Consensus 86 l~~l~~~g~L~~~l~~~~~~~~ 107 (108)
T PHA03050 86 LLEIDNMDALGDILSSIGVLRT 107 (108)
T ss_pred HHHHHHcCCHHHHHHHcccccc
Confidence 9999999999999999999864
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.1e-31 Score=159.96 Aligned_cols=94 Identities=45% Similarity=0.653 Sum_probs=89.9
Q ss_pred cccccCCceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHH
Q 034150 3 ECAVFVNEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVV 79 (102)
Q Consensus 3 e~~i~~~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~ 79 (102)
+.+++.++|+||++++||||++ +|...++.+. ++++|.++++.+++++|.+++|.++||.|||+|++|||++++.
T Consensus 8 ~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~--vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~ 85 (104)
T KOG1752|consen 8 RKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPK--VVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLM 85 (104)
T ss_pred HHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCE--EEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHH
Confidence 4578899999999999999999 9999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHCCCcHHHHHhcCchh
Q 034150 80 EKHQGGKLVPLLRDAGALA 98 (102)
Q Consensus 80 ~~~~~g~L~~~l~~~g~~~ 98 (102)
+++.+|+|.++|+.+|+++
T Consensus 86 ~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 86 ALHKSGELVPLLKEAGALW 104 (104)
T ss_pred HHHHcCCHHHHHHHhhccC
Confidence 9999999999999999875
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=99.97 E-value=1.9e-30 Score=160.99 Aligned_cols=92 Identities=25% Similarity=0.441 Sum_probs=84.9
Q ss_pred ccccCCceEEecCC-----CCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEech
Q 034150 4 CAVFVNEACCPPLE-----SCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGC 75 (102)
Q Consensus 4 ~~i~~~~vvvy~~~-----~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~ 75 (102)
..|..++|+||+++ +||||++ +|++++++|. +++++.+ ++++++|++++|++|||||||||++|||+
T Consensus 10 ~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~--~idi~~d---~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ 84 (115)
T PRK10824 10 RQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFA--YVDILQN---PDIRAELPKYANWPTFPQLWVDGELVGGC 84 (115)
T ss_pred HHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCce--EEEecCC---HHHHHHHHHHhCCCCCCeEEECCEEEcCh
Confidence 56789999999994 9999999 9999999999 8888764 67899999999999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHHhcCchhhh
Q 034150 76 DTVVEKHQGGKLVPLLRDAGALALA 100 (102)
Q Consensus 76 ~~l~~~~~~g~L~~~l~~~g~~~~~ 100 (102)
|++.+++++|+|.++|+++|+....
T Consensus 85 ddl~~l~~~G~L~~lL~~~~~~~~~ 109 (115)
T PRK10824 85 DIVIEMYQRGELQQLIKETAAKYKS 109 (115)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhcc
Confidence 9999999999999999999987653
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.95 E-value=1.4e-27 Score=144.50 Aligned_cols=83 Identities=23% Similarity=0.476 Sum_probs=76.0
Q ss_pred ccccCCceEEecC-----CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEech
Q 034150 4 CAVFVNEACCPPL-----ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGC 75 (102)
Q Consensus 4 ~~i~~~~vvvy~~-----~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~ 75 (102)
..+..++|+||++ ++||||.+ +|+++|++|+ .+|++.+ ++.+++|.+++|++++|+|||||++|||+
T Consensus 7 ~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~--~~di~~~---~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ 81 (97)
T TIGR00365 7 EQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFA--YVNVLED---PEIRQGIKEYSNWPTIPQLYVKGEFVGGC 81 (97)
T ss_pred HHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEE--EEECCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCh
Confidence 4578899999988 89999999 9999999999 7777643 78899999999999999999999999999
Q ss_pred HHHHHHHHCCCcHHHH
Q 034150 76 DTVVEKHQGGKLVPLL 91 (102)
Q Consensus 76 ~~l~~~~~~g~L~~~l 91 (102)
+++.+++++|+|.++|
T Consensus 82 ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 82 DIIMEMYQSGELQTLL 97 (97)
T ss_pred HHHHHHHHCcChHHhC
Confidence 9999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.94 E-value=4.6e-26 Score=136.13 Aligned_cols=80 Identities=23% Similarity=0.444 Sum_probs=73.9
Q ss_pred ccccCCceEEecC-----CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEech
Q 034150 4 CAVFVNEACCPPL-----ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGC 75 (102)
Q Consensus 4 ~~i~~~~vvvy~~-----~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~ 75 (102)
..+..++|+||++ ++||||.+ +|+++|++|+ .++++.+ ++++++|.+++|.+++|+|||||++|||+
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~--~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFG--TFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeE--EEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 4678899999998 59999999 9999999999 8887754 78899999999999999999999999999
Q ss_pred HHHHHHHHCCCcH
Q 034150 76 DTVVEKHQGGKLV 88 (102)
Q Consensus 76 ~~l~~~~~~g~L~ 88 (102)
+++.+++++|+|+
T Consensus 78 ~~l~~l~~~g~L~ 90 (90)
T cd03028 78 DIVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHHcCCcC
Confidence 9999999999985
No 7
>PRK10638 glutaredoxin 3; Provisional
Probab=99.94 E-value=7.8e-26 Score=133.08 Aligned_cols=80 Identities=29% Similarity=0.534 Sum_probs=73.6
Q ss_pred CCceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 8 VNEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
|++|++|++++||||++ +|+++|++|+ .++++.+ .+.++++.+.+|..++|+||+||++|||++++.+++++
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~--~~dv~~~---~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQ--EIPIDGD---AAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcE--EEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 45899999999999999 9999999999 8888764 55678899999999999999999999999999999999
Q ss_pred CCcHHHHH
Q 034150 85 GKLVPLLR 92 (102)
Q Consensus 85 g~L~~~l~ 92 (102)
|+|.++|+
T Consensus 76 g~l~~~~~ 83 (83)
T PRK10638 76 GGLDPLLK 83 (83)
T ss_pred CCHHHHhC
Confidence 99999885
No 8
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.92 E-value=9.3e-25 Score=127.10 Aligned_cols=76 Identities=33% Similarity=0.607 Sum_probs=70.4
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCCCc
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 87 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g~L 87 (102)
|+||++++||+|.+ +|+++|++|+ +++++.+ ++.++++.+.+|..++|+||++|+++||++++.+++++|+|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~--~~di~~~---~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l 75 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFT--EIRVDGD---PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKL 75 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcE--EEEecCC---HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCCh
Confidence 68999999999999 9999999999 8888765 67788899899999999999999999999999999999999
Q ss_pred HHHH
Q 034150 88 VPLL 91 (102)
Q Consensus 88 ~~~l 91 (102)
+++|
T Consensus 76 ~~~l 79 (79)
T TIGR02181 76 DPLL 79 (79)
T ss_pred hhhC
Confidence 9875
No 9
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.92 E-value=2e-24 Score=126.27 Aligned_cols=79 Identities=41% Similarity=0.656 Sum_probs=73.5
Q ss_pred eEEecCCCCHHHHH---HHhhCCCC--CccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNK--FLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGG 85 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~--~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g 85 (102)
|++|+++|||+|++ +|++++++ |+ +++++.+++..++++++.+.+|..++|++|+||+++||++++.+++++|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~--~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g 78 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYE--VVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSG 78 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCE--EEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcC
Confidence 68999999999999 99999998 88 8899987666788889999999999999999999999999999999999
Q ss_pred CcHHHH
Q 034150 86 KLVPLL 91 (102)
Q Consensus 86 ~L~~~l 91 (102)
+|+++|
T Consensus 79 ~l~~~~ 84 (84)
T TIGR02180 79 KLAELL 84 (84)
T ss_pred ChhhhC
Confidence 999875
No 10
>PTZ00062 glutaredoxin; Provisional
Probab=99.91 E-value=1.7e-24 Score=146.04 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=78.0
Q ss_pred ccccCCceEEecC-----CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEech
Q 034150 4 CAVFVNEACCPPL-----ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGC 75 (102)
Q Consensus 4 ~~i~~~~vvvy~~-----~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~ 75 (102)
..|..++|+||++ |+||||++ +|++++++|. .+||+.+ ++.+++|++++|++|+|+|||||++|||+
T Consensus 108 ~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~--~~DI~~d---~~~~~~l~~~sg~~TvPqVfI~G~~IGG~ 182 (204)
T PTZ00062 108 RLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYE--TYNIFED---PDLREELKVYSNWPTYPQLYVNGELIGGH 182 (204)
T ss_pred HHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEE--EEEcCCC---HHHHHHHHHHhCCCCCCeEEECCEEEcCh
Confidence 4578899999998 68999999 9999999999 7787754 77899999999999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHHh
Q 034150 76 DTVVEKHQGGKLVPLLRD 93 (102)
Q Consensus 76 ~~l~~~~~~g~L~~~l~~ 93 (102)
+++++++++|+|+++|.+
T Consensus 183 d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 183 DIIKELYESNSLRKVIPD 200 (204)
T ss_pred HHHHHHHHcCChhhhhhh
Confidence 999999999999999875
No 11
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3e-24 Score=128.42 Aligned_cols=87 Identities=28% Similarity=0.509 Sum_probs=79.7
Q ss_pred ccccCCceEEecC-----CCCHHHHH---HHhhCC-CCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEec
Q 034150 4 CAVFVNEACCPPL-----ESCAFCLV---LFSSTN-NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGG 74 (102)
Q Consensus 4 ~~i~~~~vvvy~~-----~~Cp~C~~---~L~~~~-i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg 74 (102)
++|..|+|++|.+ |.|.|+.+ +|...| ++|. ++||-.+ +++|+.|++.++|+|+||+||+|++|||
T Consensus 10 ~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~--~vnVL~d---~eiR~~lk~~s~WPT~PQLyi~GEfvGG 84 (105)
T COG0278 10 KQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFA--YVDVLQD---PEIRQGLKEYSNWPTFPQLYVNGEFVGG 84 (105)
T ss_pred HHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCccee--EEeeccC---HHHHhccHhhcCCCCCceeeECCEEecc
Confidence 5678999999977 67999999 999999 7888 7777765 8999999999999999999999999999
Q ss_pred hHHHHHHHHCCCcHHHHHhcC
Q 034150 75 CDTVVEKHQGGKLVPLLRDAG 95 (102)
Q Consensus 75 ~~~l~~~~~~g~L~~~l~~~g 95 (102)
+|-+.+|+++|+|+++|++++
T Consensus 85 ~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 85 CDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred HHHHHHHHHcchHHHHHHhcC
Confidence 999999999999999999875
No 12
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.91 E-value=9.7e-24 Score=123.04 Aligned_cols=78 Identities=46% Similarity=0.699 Sum_probs=73.3
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCCC
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGK 86 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g~ 86 (102)
+|++|++++||+|++ +|++.+++|+ +++++.+++..++++++++++|..++|++|++|+++||++++.++.++|+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~ 78 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPA--VVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGK 78 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcE--EEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCC
Confidence 589999999999999 9999999999 99999887667788899999999999999999999999999999999999
Q ss_pred cHH
Q 034150 87 LVP 89 (102)
Q Consensus 87 L~~ 89 (102)
|++
T Consensus 79 l~~ 81 (82)
T cd03419 79 LVK 81 (82)
T ss_pred ccC
Confidence 986
No 13
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.91 E-value=1.5e-23 Score=135.10 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=74.3
Q ss_pred ceEEecCC------CCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCC----CCcceEEEcCeEEechH
Q 034150 10 EACCPPLE------SCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQ----RTVPNVFIGGKHIGGCD 76 (102)
Q Consensus 10 ~vvvy~~~------~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~----~~vP~ifi~g~~igg~~ 76 (102)
+|+||+++ +||+|.+ +|++++|+|+ ++||+.+ ++.+++|++++|. .++|+|||+|++|||++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~--e~DVs~~---~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~d 75 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFD--ERDVSMD---SGFREELRELLGAELKAVSLPRVFVDGRYLGGAE 75 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEE--EEECCCC---HHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHH
Confidence 58999999 9999999 9999999999 7777654 7788999988765 89999999999999999
Q ss_pred HHHHHHHCCCcHHHHHhcCc
Q 034150 77 TVVEKHQGGKLVPLLRDAGA 96 (102)
Q Consensus 77 ~l~~~~~~g~L~~~l~~~g~ 96 (102)
++.+++++|+|.++|+.+..
T Consensus 76 el~~L~e~G~L~~lL~~~~~ 95 (147)
T cd03031 76 EVLRLNESGELRKLLKGIRA 95 (147)
T ss_pred HHHHHHHcCCHHHHHhhccc
Confidence 99999999999999998743
No 14
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.89 E-value=1.2e-22 Score=116.74 Aligned_cols=71 Identities=25% Similarity=0.531 Sum_probs=64.4
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCC-CcceEEEcCeEEechHHHHHHHHCC
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQR-TVPNVFIGGKHIGGCDTVVEKHQGG 85 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~-~vP~ifi~g~~igg~~~l~~~~~~g 85 (102)
+|+||++++||+|.+ +|+++|++|+ +++++.+ ++.++++.+.+|.. ++|+||++|+++||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~--~i~i~~~---~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYE--EIDVDGD---PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEE--EEECCCC---HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 589999999999999 9999999999 8888764 66778888888877 9999999999999999999999987
No 15
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.9e-23 Score=119.80 Aligned_cols=76 Identities=29% Similarity=0.512 Sum_probs=67.2
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCCC
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGK 86 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g~ 86 (102)
.|+||++++||||++ +|+++|++|+ +++++.++. .+.++.+++.+|.+|||+||+||+++||++++.++...|.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~--~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~ 78 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYE--EIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGK 78 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcE--EEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhcc
Confidence 689999999999999 9999999999 888887642 4666777777799999999999999999999999998887
Q ss_pred cH
Q 034150 87 LV 88 (102)
Q Consensus 87 L~ 88 (102)
|.
T Consensus 79 l~ 80 (80)
T COG0695 79 LD 80 (80)
T ss_pred CC
Confidence 63
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.88 E-value=4.8e-22 Score=114.20 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=63.1
Q ss_pred CceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHH
Q 034150 9 NEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
.+|+||+.++||+|++ +|+++|++|+ .++++.+ ++.++++.+++|..++|+||+||++|||++++.+++
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~--~~di~~~---~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYV--EINIDIF---PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceE--EEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 3799999999999999 9999999999 8888765 667889999999999999999999999999998875
No 17
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.87 E-value=8.3e-22 Score=114.98 Aligned_cols=72 Identities=31% Similarity=0.396 Sum_probs=62.4
Q ss_pred cccCCceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHH
Q 034150 5 AVFVNEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 81 (102)
Q Consensus 5 ~i~~~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~ 81 (102)
+-..++|+||++++||+|++ +|+++|++|+ .++++.+.+ ..++...+|..++|+||+||++|||++++.++
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~--~idi~~~~~----~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~ 77 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFE--EIPLGNDAR----GRSLRAVTGATTVPQVFIGGKLIGGSDELEAY 77 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcE--EEECCCChH----HHHHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence 44678999999999999999 9999999999 888876532 34567788999999999999999999999887
Q ss_pred H
Q 034150 82 H 82 (102)
Q Consensus 82 ~ 82 (102)
.
T Consensus 78 l 78 (79)
T TIGR02190 78 L 78 (79)
T ss_pred h
Confidence 5
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.86 E-value=1.9e-21 Score=111.41 Aligned_cols=67 Identities=27% Similarity=0.364 Sum_probs=59.7
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
+|+||++++||+|.+ +|+++|++|+ .++++.+. ...+++..+|..++|+||+||+++||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~--~~~v~~~~----~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYE--EIPLGKDI----TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcE--EEECCCCh----hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 699999999999999 9999999999 88887653 2457778899999999999999999999998875
No 19
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.85 E-value=3e-21 Score=141.79 Aligned_cols=88 Identities=23% Similarity=0.418 Sum_probs=73.3
Q ss_pred CCceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHH-----HHhCCCCcceEEEcCeEEechHHHH
Q 034150 8 VNEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALA-----EWTGQRTVPNVFIGGKHIGGCDTVV 79 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~-----~~~g~~~vP~ifi~g~~igg~~~l~ 79 (102)
|.+|+|||+++||+|++ +|+++||+|+ .++|+.++...++.+++. ..+|.++||+|||||++|||++++.
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~--~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFT--QISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeE--EEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHH
Confidence 46899999999999999 9999999999 888886543223333332 2368999999999999999999998
Q ss_pred HHHHCCCcHHHHHhcCchhh
Q 034150 80 EKHQGGKLVPLLRDAGALAL 99 (102)
Q Consensus 80 ~~~~~g~L~~~l~~~g~~~~ 99 (102)
+ .+|+|.++|+..++...
T Consensus 79 ~--~~g~l~~~~~~~~~~~~ 96 (410)
T PRK12759 79 A--RAGEVIARVKGSSLTTF 96 (410)
T ss_pred H--HhCCHHHHhcCCccccc
Confidence 7 99999999999988654
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.84 E-value=2e-20 Score=110.86 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=56.8
Q ss_pred eEEecCCCCHHHHH---HHhhCC-----CCCccceEEeccCCChHHHHHHHHHHhCC--CCcceEEEcCeEEechHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTN-----NKFLKSLHVLILEGDGSKIQAALAEWTGQ--RTVPNVFIGGKHIGGCDTVVE 80 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~-----i~~~~~~i~id~~~~~~~~~~~l~~~~g~--~~vP~ifi~g~~igg~~~l~~ 80 (102)
|+||+++|||||.+ +|++++ ++|+ .++++. + ...++++.+.+|. .+||+||+||+++||+++|.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~--~idi~~--~-~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~ 76 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFR--YIDIHA--E-GISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ 76 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEE--EEECCC--C-HHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH
Confidence 78999999999999 888885 4555 555553 3 3335668888886 899999999999999999999
Q ss_pred HHHCC
Q 034150 81 KHQGG 85 (102)
Q Consensus 81 ~~~~g 85 (102)
+++++
T Consensus 77 ~~~~~ 81 (86)
T TIGR02183 77 LVKEN 81 (86)
T ss_pred HHHhc
Confidence 98765
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.84 E-value=2.6e-20 Score=109.85 Aligned_cols=70 Identities=24% Similarity=0.419 Sum_probs=59.8
Q ss_pred ceEEecCCCCHHHHH---HHhh-----CCCCCccceEEeccCCChHHHHHHHHHHhCC--CCcceEEEcCeEEechHHHH
Q 034150 10 EACCPPLESCAFCLV---LFSS-----TNNKFLKSLHVLILEGDGSKIQAALAEWTGQ--RTVPNVFIGGKHIGGCDTVV 79 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~-----~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~--~~vP~ifi~g~~igg~~~l~ 79 (102)
+|+||++++||+|++ +|++ .+++|+ .++++.+ ...++++.++.|. .++|+||+||++|||++++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~--~idi~~~---~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~ 76 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYR--YVDIHAE---GISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFE 76 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEE--EEECCCC---hHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHH
Confidence 699999999999999 8888 789999 7777754 3336678877775 89999999999999999999
Q ss_pred HHHHC
Q 034150 80 EKHQG 84 (102)
Q Consensus 80 ~~~~~ 84 (102)
++.++
T Consensus 77 ~~~~~ 81 (85)
T PRK11200 77 AYVKE 81 (85)
T ss_pred HHHHH
Confidence 98764
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.81 E-value=2.1e-19 Score=101.22 Aligned_cols=68 Identities=28% Similarity=0.531 Sum_probs=61.4
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
+|++|++++||+|++ +|++++++|. .++++.+ .+.++++.+++|..++|++|+||+++||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~--~~di~~~---~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFE--EIDILED---GELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEE--EEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 589999999999999 9999999999 7777654 557889999999999999999999999999998875
No 23
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.4e-20 Score=123.83 Aligned_cols=86 Identities=24% Similarity=0.440 Sum_probs=79.0
Q ss_pred ccccCCceEEecC-----CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEech
Q 034150 4 CAVFVNEACCPPL-----ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGC 75 (102)
Q Consensus 4 ~~i~~~~vvvy~~-----~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~ 75 (102)
..+..++|++|.+ |.|.++++ +|+++|++|. .+||-.+ +++|+.+++.+.|+|+||+||+|+++||+
T Consensus 134 ~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~--~fdIL~D---eelRqglK~fSdWPTfPQlyI~GEFiGGl 208 (227)
T KOG0911|consen 134 KLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYT--IFDVLTD---EELRQGLKEFSDWPTFPQLYVKGEFIGGL 208 (227)
T ss_pred HhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCee--EEeccCC---HHHHHHhhhhcCCCCccceeECCEeccCc
Confidence 4567889999987 57999999 9999999999 8888766 88999999999999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHHhc
Q 034150 76 DTVVEKHQGGKLVPLLRDA 94 (102)
Q Consensus 76 ~~l~~~~~~g~L~~~l~~~ 94 (102)
|-+.+|+++|+|+..|+++
T Consensus 209 DIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 209 DILKEMHEKGELVYTLKEA 227 (227)
T ss_pred HHHHHHhhcccHHHHhhcC
Confidence 9999999999999999864
No 24
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.79 E-value=7.7e-19 Score=105.27 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=65.1
Q ss_pred eEEecCCCCH------HHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhC----CCCcceEEEcCeEEechHH
Q 034150 11 ACCPPLESCA------FCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTG----QRTVPNVFIGGKHIGGCDT 77 (102)
Q Consensus 11 vvvy~~~~Cp------~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g----~~~vP~ifi~g~~igg~~~ 77 (102)
|+||+++.-. .|.+ +|++++|+|+ .++|+.+ ++.++++++.+| .+++||||+||++|||+++
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~--eiDI~~d---~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~dd 76 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFE--EVDISMN---EENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEA 76 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceE--EEecCCC---HHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHH
Confidence 6788776433 3444 9999999999 7777654 778999998875 4999999999999999999
Q ss_pred HHHHHHCCCcHHHHH
Q 034150 78 VVEKHQGGKLVPLLR 92 (102)
Q Consensus 78 l~~~~~~g~L~~~l~ 92 (102)
+.++.++|+|.++|+
T Consensus 77 l~~l~e~g~L~~lLk 91 (92)
T cd03030 77 FFEAKENNTLEEFLK 91 (92)
T ss_pred HHHHHhCCCHHHHhC
Confidence 999999999999986
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.78 E-value=1.4e-18 Score=96.16 Aligned_cols=57 Identities=26% Similarity=0.446 Sum_probs=53.2
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEE
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~i 72 (102)
|++|++++||+|.+ +|+++|++|+ +++++.+ ++.++++++.+|..++|+||+||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~--~~dv~~~---~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYE--EVDVDED---EEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEE--EEEGGGS---HHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeee--Ecccccc---hhHHHHHHHHcCCCccCEEEECCEEC
Confidence 78999999999999 9999999999 8888876 58899999999999999999999986
No 26
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.70 E-value=7.4e-17 Score=92.37 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=52.6
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCe-EEechHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGK-HIGGCDT 77 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~-~igg~~~ 77 (102)
|+||++++||+|++ +|+++|++|+ +++++.+ ++.+++++. .|..++|+++++|. ++||++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~--~~di~~~---~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFE--EINIDEQ---PEAIDYVKA-QGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceE--EEECCCC---HHHHHHHHH-cCCcccCEEEECCCcEEeccCH
Confidence 68999999999999 9999999999 8888765 566777775 48899999999775 9999864
No 27
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.70 E-value=1.1e-16 Score=93.93 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=54.4
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 77 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~ 77 (102)
+|+||++++||+|++ +|+++||+|+ .++++.+ ++.+++++. .|..++|++++++..++||+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~--~idi~~~---~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFE--MINVDRV---PEAAETLRA-QGFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceE--EEECCCC---HHHHHHHHH-cCCCCcCEEEECCEEEecCCH
Confidence 699999999999999 9999999999 8888765 556777765 599999999999999999964
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.56 E-value=2.2e-14 Score=80.96 Aligned_cols=63 Identities=25% Similarity=0.276 Sum_probs=53.7
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 77 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~ 77 (102)
+|++|+.+|||+|++ +|++.+++|. .++++.+ ++.++++.+..|..++|+++++|+.++|++.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~--~vdi~~~---~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFE--EIDVEKD---SAAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEE--EEeccCC---HHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 488999999999999 8999999999 7777654 5556778888899999999999999988753
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.53 E-value=8.5e-14 Score=78.43 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=55.1
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 77 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~ 77 (102)
+|++|+.+|||+|.+ +|++.+++|. .++++.+ .+.++++.+.++..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~--~~~i~~~---~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFE--EVDVDED---PEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeE--EEeCCCC---HHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 489999999999999 8899999999 8887754 5567788888889999999999999999875
No 30
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.9e-13 Score=94.95 Aligned_cols=84 Identities=25% Similarity=0.357 Sum_probs=70.2
Q ss_pred cCCceEEecCCC------CHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCC----CCcceEEEcCeEEe
Q 034150 7 FVNEACCPPLES------CAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQ----RTVPNVFIGGKHIG 73 (102)
Q Consensus 7 ~~~~vvvy~~~~------Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~----~~vP~ifi~g~~ig 73 (102)
..+.||+|+++- --.|.. +|++++|.|. +.||..+ ...+++|+.+.|. .++|+|||+|++||
T Consensus 129 ge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~--ERDVSMd---~~fr~EL~~~lg~~~~~~~LPrVFV~GryIG 203 (281)
T KOG2824|consen 129 GEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVD--ERDVSMD---SEFREELQELLGEDEKAVSLPRVFVKGRYIG 203 (281)
T ss_pred CCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEE--Eeccccc---HHHHHHHHHHHhcccccCccCeEEEccEEec
Confidence 456899999863 335655 9999999999 5555554 7788999887654 68899999999999
Q ss_pred chHHHHHHHHCCCcHHHHHhcC
Q 034150 74 GCDTVVEKHQGGKLVPLLRDAG 95 (102)
Q Consensus 74 g~~~l~~~~~~g~L~~~l~~~g 95 (102)
|.+++++|++.|+|.++|++..
T Consensus 204 gaeeV~~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 204 GAEEVVRLNEEGKLGKLLKGIP 225 (281)
T ss_pred cHHHhhhhhhcchHHHHHhcCC
Confidence 9999999999999999999875
No 31
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.45 E-value=4.2e-13 Score=76.70 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=50.4
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHh-CCCCcceEEE-cCeEEechH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWT-GQRTVPNVFI-GGKHIGGCD 76 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~-g~~~vP~ifi-~g~~igg~~ 76 (102)
+|++|+.+|||+|++ +|++.+++|+ .++++.+ ....+++++++ |..++|++++ +|+.+...+
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~--~idi~~~---~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYE--WVDIEED---EGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceE--EEeCcCC---HhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 489999999999999 9999999999 8887754 45567777776 8999999976 667766443
No 32
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.40 E-value=1.8e-12 Score=78.56 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=56.5
Q ss_pred ceEEecCCCCHH------HHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhC---------CCCcceEEEcCeE
Q 034150 10 EACCPPLESCAF------CLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTG---------QRTVPNVFIGGKH 71 (102)
Q Consensus 10 ~vvvy~~~~Cp~------C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g---------~~~vP~ifi~g~~ 71 (102)
.|.||+++.-.. +.+ +|++++|+|+ .+||..+ ++.++.+++..| ..-.|+||.|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe--~vDIa~~---e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y 76 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFE--EVDIAMD---EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEY 76 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EE--EEETTT----HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcE--EEeCcCC---HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEE
Confidence 477887665443 222 9999999999 7777653 778999987763 4456899999999
Q ss_pred EechHHHHHHHHCCCcHHHHHh
Q 034150 72 IGGCDTVVEKHQGGKLVPLLRD 93 (102)
Q Consensus 72 igg~~~l~~~~~~g~L~~~l~~ 93 (102)
+|+++++.++.++++|.++|+-
T Consensus 77 ~Gdye~f~ea~E~~~L~~fL~L 98 (99)
T PF04908_consen 77 CGDYEDFEEANENGELEEFLKL 98 (99)
T ss_dssp EEEHHHHHHHHCTT-HHHHHT-
T ss_pred EeeHHHHHHHHhhCHHHHHhCc
Confidence 9999999999999999999863
No 33
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.33 E-value=2.7e-12 Score=71.98 Aligned_cols=55 Identities=20% Similarity=0.131 Sum_probs=41.5
Q ss_pred ceEEecCCCCHHHHH---HHhhC-----CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEe
Q 034150 10 EACCPPLESCAFCLV---LFSST-----NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIG 73 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~-----~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~ig 73 (102)
+|++|+++|||+|++ +|++. ++++. .+|++.. .++.+.+|..++|+++++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~--~id~~~~-------~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAE--MIDAAEF-------PDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEE--EEEcccC-------HhHHHHcCCcccCEEEECCEEEE
Confidence 589999999999999 56543 45565 5555433 23566789999999999999875
No 34
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.24 E-value=8.5e-11 Score=67.81 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=56.6
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE--cCeEEechHHHHHHHHC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI--GGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi--~g~~igg~~~l~~~~~~ 84 (102)
+++|+.+.||+|.+ +|+.+|++|+ .++++.. ....+++.+.++..++|++.. +|..+.+.+.+.++.++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~--~~~v~~~---~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVI--LYPCPKG---SPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEE--EEECCCC---hHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 68999999999999 8999999999 8777543 334567778889999999977 36788999888887653
No 35
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.19 E-value=1.4e-10 Score=65.60 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=53.0
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEc-CeEEechHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIG-GKHIGGCDTVVEKHQ 83 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~l~~~~~ 83 (102)
+++|+.++||+|.+ +|..+|++|+ .+.++.... .. ..+.++..++|+++.+ |..++++..+.++.+
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~--~~~~~~~~~----~~-~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVE--QIILQNDDE----AT-PIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeE--EEECCCCch----HH-HHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 36899999999999 9999999999 777775321 12 2345778899999987 889999999988765
No 36
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.19 E-value=1.6e-10 Score=63.71 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=55.4
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
+++|+.++||+|.+ +|+..|++|+ .++++....... ++.+.++..++|+++.+|..++++..+.++.
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~--~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl 70 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYE--LVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEYL 70 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcE--EEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 36899999999999 8899999999 888876543222 5777889999999999999999998877654
No 37
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.16 E-value=3.9e-10 Score=64.70 Aligned_cols=67 Identities=10% Similarity=0.319 Sum_probs=53.9
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEc----CeEEechHHHHHHH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIG----GKHIGGCDTVVEKH 82 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~----g~~igg~~~l~~~~ 82 (102)
++++|+.+.||+|++ +|..+|++|+ .++++... +.+++ .++..++|+++++ |..+..+..+.++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~--~~~~~~~~-----~~~~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL 72 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYE--VVEVNPVS-----RKEIK-WSSYKKVPILRVESGGDGQQLVDSSVIISTL 72 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceE--EEECCchh-----HHHHH-HhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence 588999999999999 9999999999 77765321 23343 4788999999987 78899998888776
Q ss_pred HC
Q 034150 83 QG 84 (102)
Q Consensus 83 ~~ 84 (102)
+.
T Consensus 73 ~~ 74 (77)
T cd03040 73 KT 74 (77)
T ss_pred HH
Confidence 53
No 38
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.07 E-value=1.3e-09 Score=61.68 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=52.9
Q ss_pred EEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEc-CeEEechHHHHHH
Q 034150 12 CCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIG-GKHIGGCDTVVEK 81 (102)
Q Consensus 12 vvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~l~~~ 81 (102)
++|+.++||+|.+ +|+.+|++|+ .++++.... ..++.+.++..++|++..+ |..+..+..+.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e--~~~v~~~~~----~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVE--LREVELKNK----PAEMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcE--EEEeCCCCC----CHHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 6899999999999 8999999999 888876432 2467778899999999985 8888887777665
No 39
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.07 E-value=1.4e-09 Score=61.45 Aligned_cols=67 Identities=10% Similarity=0.000 Sum_probs=55.1
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
+++|+.+.||+|.+ +|+..|++|+ .++++.... ..++++.++..++|++..+|..+.....+.++.+
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~--~~~v~~~~~----~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVE--IIDVDPDNP----PEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccE--EEEcCCCCC----CHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 47999999999999 8899999999 777775422 3456677888999999888888888888887765
No 40
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.03 E-value=3.3e-09 Score=62.77 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=57.2
Q ss_pred cCCceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEc-CeEEechHHHHHHH
Q 034150 7 FVNEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIG-GKHIGGCDTVVEKH 82 (102)
Q Consensus 7 ~~~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~l~~~~ 82 (102)
....+++|+.+.||+|.+ +|...|++|+ .++++.... .+++.+.++..++|++.++ |..+.....+.++.
T Consensus 15 ~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~--~~~v~~~~~----~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yL 88 (89)
T cd03055 15 VPGIIRLYSMRFCPYAQRARLVLAAKNIPHE--VININLKDK----PDWFLEKNPQGKVPALEIDEGKVVYESLIICEYL 88 (89)
T ss_pred CCCcEEEEeCCCCchHHHHHHHHHHcCCCCe--EEEeCCCCC----cHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhh
Confidence 345699999999999999 8999999999 777775421 3457778889999999998 88888888877764
No 41
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.01 E-value=2.1e-09 Score=61.90 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=38.6
Q ss_pred ceEEecCCCCHHHHH---HH----hhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCe
Q 034150 10 EACCPPLESCAFCLV---LF----SSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGK 70 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L----~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~ 70 (102)
.|++|+.+|||+|+. .| ++++..+. ++.+|.+.+ . .+.+..|..++|+++++|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~--~~~vd~~~~-~----~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVE--VEYINVMEN-P----QKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceE--EEEEeCccC-H----HHHHHcCCccCCEEEECCE
Confidence 588999999999998 44 34554455 556665433 2 2344588999999999997
No 42
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.01 E-value=1.6e-09 Score=61.14 Aligned_cols=69 Identities=10% Similarity=-0.010 Sum_probs=53.3
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE-cCeEEechHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKH 82 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~l~~~~ 82 (102)
+++|+.++||+|.+ +|..+|++|+ .+.++.... .....++.+.++..++|++.+ +|..+.....+.++.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~--~~~v~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yL 73 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVP--LVTVDLAAG-EQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYL 73 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCce--EEEeecccC-ccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHh
Confidence 47899999999999 8999999999 777765321 122356777889999999986 667788877776654
No 43
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.98 E-value=3.2e-09 Score=60.25 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=56.4
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
+++|+.+.||+|++ +|+..|++|+ .+.++.... ....+++.+.+...++|.+..+|..+.....+.++..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e--~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELN--LKEVNLMKG-EHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLV 73 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCE--EEEecCccC-CcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 47899999999988 8999999999 777775422 3335677788888999999999888888887777654
No 44
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.91 E-value=5.3e-09 Score=59.89 Aligned_cols=66 Identities=9% Similarity=0.114 Sum_probs=56.9
Q ss_pred EecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 13 CPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 13 vy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
+|+.++||+|.+ +|+.+|++|+ +++++.... +.++.+.++..++|++..||..+.++..+.++.++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~--~~~v~~~~~----~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYE--LVPVDPEEK----RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEE--EEEEBTTST----SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEE--EeccCcccc----hhHHHhhcccccceEEEECCEEEeCHHHHHHHHHH
Confidence 689999999999 8899999999 888886532 56778888999999999999999999998887653
No 45
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.87 E-value=1.7e-08 Score=56.85 Aligned_cols=69 Identities=7% Similarity=0.053 Sum_probs=54.9
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
+++|+.+.||+|.+ +|...|++|+ .++++.... ....+++.+.+...++|++..+|..+.....+.++.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~--~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl 72 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYE--WVEVDILKG-ETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYL 72 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcE--EEEecCCCc-ccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 47899999999999 8899999999 777775321 233456777788899999999999888887776653
No 46
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.81 E-value=2.2e-08 Score=57.71 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=40.1
Q ss_pred ceEEecCCCCHHHHH-------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEE
Q 034150 10 EACCPPLESCAFCLV-------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHI 72 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~i 72 (102)
.|.+|+ +|||+|+. ++++++++++ +++++.. . +. ...|..++|++++||+.+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~--~~~v~~~---~----~a-~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAE--FEKVTDM---N----EI-LEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeE--EEEeCCH---H----HH-HHcCCCcCCEEEECCEEE
Confidence 367787 99999999 6778898888 8888721 1 22 237999999999999754
No 47
>PHA02125 thioredoxin-like protein
Probab=98.81 E-value=1.6e-08 Score=58.05 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=39.8
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEE
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~i 72 (102)
|++|+.+||++|+. +|++ +.+. ++++|.+.. .++.+..+..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~--~~~vd~~~~-----~~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYT--YVDVDTDEG-----VELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--Hhhe--EEeeeCCCC-----HHHHHHcCCceeCeEE-CCEEE
Confidence 78999999999998 7764 4566 778876542 3566778999999987 66543
No 48
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.75 E-value=5.9e-08 Score=55.45 Aligned_cols=69 Identities=7% Similarity=-0.043 Sum_probs=55.7
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
+++|..+.||+|.+ +|..+|++|+ .++++.... .....++.+++...++|++..||..+..+..+.++.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e--~~~v~~~~~-~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCE--EYDVSLPLS-EHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCE--EEEecCCcC-ccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHh
Confidence 47899999999988 8999999999 877775422 222456888899999999999999998888877664
No 49
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.75 E-value=2.4e-08 Score=59.32 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=41.0
Q ss_pred ceEEecCCCCHHHHH---HHh----hC-CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEe
Q 034150 10 EACCPPLESCAFCLV---LFS----ST-NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIG 73 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~----~~-~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~ig 73 (102)
.|.+|+.+|||+|.. +++ .. ++++. .++++.. .++.+.+|..++|.+++||+.++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~--~vd~~~~-------~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHE--MIDGALF-------QDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEE--EEEhHhC-------HHHHHHcCCccCCEEEECCEEEE
Confidence 588899999999999 333 23 46666 6666543 34556789999999999998665
No 50
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.73 E-value=1.3e-08 Score=62.68 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=33.3
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTG 58 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g 58 (102)
|+||+.++||+|++ +|+++|++|+ ++++..++. .+++|.++.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~--~idi~~~~~---~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYT--AIDIVEEPP---SKEELKKWLE 46 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceE--EecccCCcc---cHHHHHHHHH
Confidence 57999999999999 9999999999 888877632 2444544433
No 51
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.71 E-value=1.6e-07 Score=53.44 Aligned_cols=71 Identities=6% Similarity=-0.085 Sum_probs=57.1
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
+++|+.+.||+|.+ +|...|++|+ .+.++.... ....+.+.+.+...++|.+..+|..+.....+.++..+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~--~~~~~~~~~-~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~ 75 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYE--LVPVDLTKG-EHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAE 75 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcE--EEEeCcccc-ccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhh
Confidence 67999999999999 8899999999 777775421 22345677788899999999999999888888887653
No 52
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.67 E-value=7e-08 Score=60.44 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=38.3
Q ss_pred eEEecCCCCHHHHH-------HHhhCCCCCccceEEeccCC-----ChHHHHHHHHHHh----CCCCcceE--EEcCeEE
Q 034150 11 ACCPPLESCAFCLV-------LFSSTNNKFLKSLHVLILEG-----DGSKIQAALAEWT----GQRTVPNV--FIGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~-----~~~~~~~~l~~~~----g~~~vP~i--fi~g~~i 72 (102)
++.|+++|||+|+. +.++.++++- ++++|.+. +..++ .++.+.. +..++|++ |.+|+.+
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y--~vdvd~~~~~~~~~~~~~-~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIY--YIDSENNGSFEMSSLNDL-TAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEE--EEECCCccCcCcccHHHH-HHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 77799999999999 4445455555 77887542 11122 2333433 45569987 5588765
Q ss_pred ec
Q 034150 73 GG 74 (102)
Q Consensus 73 gg 74 (102)
+.
T Consensus 104 ~~ 105 (122)
T TIGR01295 104 SV 105 (122)
T ss_pred EE
Confidence 43
No 53
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.66 E-value=1.7e-07 Score=56.03 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=52.1
Q ss_pred CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 17 ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 17 ~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
..||||++ .|..+|++|+ .+++|.... .+.+.+++....+|++..+|..+...+.+.++.++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye--~~~vd~~~~----p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde 84 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFN--VTTVDMKRK----PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEE 84 (91)
T ss_pred CCChhHHHHHHHHHHCCCceE--EEEeCCCCC----CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHH
Confidence 57999999 8899999999 888886533 25577888889999999999999999998887763
No 54
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.65 E-value=1.3e-07 Score=54.37 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=37.4
Q ss_pred ceEEecCCCCHHHHH-------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeE
Q 034150 10 EACCPPLESCAFCLV-------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKH 71 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~ 71 (102)
+|.+|+ ++||+|.. ++.+.+++++ ++++ . + .+++ ..+|..++|.++|||+.
T Consensus 2 ~I~v~~-~~C~~C~~~~~~~~~~~~~~~i~~e--i~~~-~--~----~~~~-~~ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKVFS-PGCPYCPELVQLLKEAAEELGIEVE--IIDI-E--D----FEEI-EKYGVMSVPALVINGKV 59 (76)
T ss_dssp EEEEEC-SSCTTHHHHHHHHHHHHHHTTEEEE--EEET-T--T----HHHH-HHTT-SSSSEEEETTEE
T ss_pred EEEEeC-CCCCCcHHHHHHHHHHHHhcCCeEE--EEEc-c--C----HHHH-HHcCCCCCCEEEECCEE
Confidence 466754 55999998 6667788887 7776 2 2 3445 56899999999999984
No 55
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.64 E-value=3.6e-07 Score=51.88 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=52.6
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhC-CCCcceEEEcCeEEechHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTG-QRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g-~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
+.+|+.+.||+|.+ +|...|++|+ .++++.... ..++.+.+. ..++|.+..+|..+.....+.++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~--~~~~~~~~~----~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYE--YVEEDLGNK----SELLLASNPVHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCE--EEEeCcccC----CHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence 47899999999999 8899999999 776664311 234556666 4899999999888888888887765
No 56
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.62 E-value=4.5e-08 Score=59.53 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=28.5
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILE 43 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~ 43 (102)
|+||+.++||+|++ +|+++|++|+ ++++..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~--~idi~~~ 34 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYE--FIDYLKE 34 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcE--EEeeccC
Confidence 57999999999999 9999999999 8888765
No 57
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.55 E-value=5.9e-07 Score=50.77 Aligned_cols=55 Identities=11% Similarity=0.148 Sum_probs=45.6
Q ss_pred CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 17 ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 17 ~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
++||+|.+ +|+..|++|+ .++++... .+....+|++..+|+.+.++..+.++.++
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~--~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYE--VVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceE--EEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 48999999 8899999999 77776421 45677999999999999999988887654
No 58
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.54 E-value=5.3e-07 Score=50.68 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=50.3
Q ss_pred EEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHH
Q 034150 12 CCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 12 vvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
++|+...|++|.+ +|...|++|+ .+.++.... .....++.+.+...++|++..+|..+.....+.++.
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~--~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYE--YVPVNLLKG-EQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYL 72 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCe--EEEecCccC-CcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 5776666555555 9999999999 777775321 222356777788999999999999888888777664
No 59
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.53 E-value=7.3e-07 Score=50.39 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=51.2
Q ss_pred eEEecCCCCHHHHH---HHhh--CCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE-cCeEEechHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSS--TNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKH 82 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~--~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~l~~~~ 82 (102)
+++|+.+.||+|.+ +|.. .|++|+ .+.++.... ..++.+.++..++|.+.. ||..+..+..+.++.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~--~~~~~~~~~----~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yL 72 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVE--LVLVNPWSD----DESLLAVNPLGKIPALVLDDGEALFDSRVICEYL 72 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcE--EEEcCcccC----ChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhh
Confidence 47899999999999 7777 889999 877774322 244566788899999975 778888888777654
No 60
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.50 E-value=2.5e-07 Score=58.61 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=28.7
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILE 43 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~ 43 (102)
|+||+.++||+|++ +|+++||+|+ ++++..+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~--~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFT--ERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcE--EeeccCC
Confidence 78999999999999 9999999999 8888765
No 61
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.49 E-value=2.6e-07 Score=52.29 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=48.2
Q ss_pred CCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE-cCeEEechHHHHHHHHC
Q 034150 18 SCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 18 ~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~l~~~~~~ 84 (102)
.||||++ +|..+|++|+ ...++...++.....++.+.++..+||.+.. +|+.+..+..+.++.++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~--~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYE--IKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCE--EEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCE--EEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 4999999 8899999999 6555332222222356788899999999997 89999999999888764
No 62
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=98.47 E-value=1.8e-06 Score=58.13 Aligned_cols=72 Identities=6% Similarity=-0.002 Sum_probs=58.0
Q ss_pred cCCceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 7 FVNEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 7 ~~~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
....+++|+.+.||+|.+ +|...|++|+ .+.++... ...++.+++...+||++..||..+-.+..+.++..
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e--~~~v~~~~----~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~ 80 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGVSVE--IEQVEKDN----LPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLD 80 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCCCCE--EEeCCccc----CCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHH
Confidence 344589999999999999 8899999999 77777532 13467778888999999999988888888877664
Q ss_pred C
Q 034150 84 G 84 (102)
Q Consensus 84 ~ 84 (102)
+
T Consensus 81 ~ 81 (211)
T PRK09481 81 E 81 (211)
T ss_pred H
Confidence 3
No 63
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.46 E-value=3.2e-06 Score=49.20 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=35.2
Q ss_pred ceEEecCCCCHHHHH---HHhhCC--CCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcC
Q 034150 10 EACCPPLESCAFCLV---LFSSTN--NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGG 69 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~--i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g 69 (102)
++++||+++|+.|.. .|.... .+++...+||+ ++ + ++.+.+|. .+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~--~d-~----~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDID--ED-P----ELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETT--TT-H----HHHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECC--CC-H----HHHHHhcC-CCCEEEEcC
Confidence 589999999999999 777543 33441155555 33 2 36667775 799999999
No 64
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=1.6e-07 Score=56.40 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=63.0
Q ss_pred CceEEecCCCCHHHHH---------HHhhCCCCCccceEEeccCCC-----hHHHHHHHHHHhCCCCcceEEEcCeEEec
Q 034150 9 NEACCPPLESCAFCLV---------LFSSTNNKFLKSLHVLILEGD-----GSKIQAALAEWTGQRTVPNVFIGGKHIGG 74 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~---------~L~~~~i~~~~~~i~id~~~~-----~~~~~~~l~~~~g~~~vP~ifi~g~~igg 74 (102)
..|.+|+++.-+.-.. +|+...|.|+ .+++....+ ...++++.+-..|....||||-++++.|+
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk--~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gd 79 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFK--EIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGD 79 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcc--eeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCcccccc
Confidence 4578888776554322 8999999999 666544321 12234444555788899999999999999
Q ss_pred hHHHHHHHHCCCcHHHHHhcC
Q 034150 75 CDTVVEKHQGGKLVPLLRDAG 95 (102)
Q Consensus 75 ~~~l~~~~~~g~L~~~l~~~g 95 (102)
++.+.+..+++.|.++|+-+.
T Consensus 80 ye~F~ea~E~ntl~eFL~lap 100 (108)
T KOG4023|consen 80 YELFFEAVEQNTLQEFLGLAP 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999997654
No 65
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.42 E-value=1.1e-06 Score=62.13 Aligned_cols=78 Identities=13% Similarity=0.338 Sum_probs=60.4
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHH----
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH---- 82 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~---- 82 (102)
++++|...+||||-+ +|+=+|++|. +++++ +-.|++++ ++....||.+.+.|+-+-.++-+....
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~--VVEVn-----pV~r~eIk-~SsykKVPil~~~Geqm~dSsvIIs~laTyL 161 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYA--VVEVN-----PVLRQEIK-WSSYKKVPILLIRGEQMVDSSVIISLLATYL 161 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceE--EEEec-----chhhhhcc-ccccccccEEEeccceechhHHHHHHHHHHh
Confidence 689999999999999 9999999999 99998 44577766 578899999999888777776655544
Q ss_pred --HCCCcHHHHHhcC
Q 034150 83 --QGGKLVPLLRDAG 95 (102)
Q Consensus 83 --~~g~L~~~l~~~g 95 (102)
....|.++.+-..
T Consensus 162 q~~~q~l~eiiq~yP 176 (370)
T KOG3029|consen 162 QDKRQDLGEIIQMYP 176 (370)
T ss_pred ccCCCCHHHHHHhcc
Confidence 2335566555444
No 66
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.42 E-value=2.8e-06 Score=48.24 Aligned_cols=69 Identities=9% Similarity=-0.023 Sum_probs=55.2
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
++++|..+.|+.|.+ +|...|++|+ .+.++.. ....+++..+...++|++..+|..+.....+.++..+
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e--~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWE--EERVTYE----EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCE--EEEecHH----HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 467898888999988 8899999999 7777642 2234566777889999999999999999888887653
No 67
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.41 E-value=2.3e-06 Score=53.11 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=37.3
Q ss_pred eEEecCCCCHHHHH---HHhhCCCC----CccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEEe
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNK----FLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHIG 73 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~----~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~ig 73 (102)
|+-|+.+|||.|+. .|++.--+ .. ++.+|.+.. ..+.+..+..++|++ |-+|+.++
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~--f~kVDvD~~-----~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAV--IYLVDIDEV-----PDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceE--EEEEECCCC-----HHHHHHcCCCCCCEEEEEECCEEEE
Confidence 44499999999998 44332211 23 455665543 347777899999987 56888654
No 68
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.41 E-value=2.6e-06 Score=48.51 Aligned_cols=70 Identities=7% Similarity=-0.042 Sum_probs=54.6
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
+++|+.+.+++|++ +|+..|++|+ .+.++.... ....+++.+.+...++|++..+|..+.....+.++..
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~--~~~v~~~~~-~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFE--ECPIDLRKG-EQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcE--EEEecCCCC-CcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 46899999999988 7899999999 777775421 2223457777889999999988888888888777764
No 69
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.37 E-value=2.6e-06 Score=49.09 Aligned_cols=69 Identities=3% Similarity=-0.004 Sum_probs=54.2
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEc---CeEEechHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIG---GKHIGGCDTVVEKHQ 83 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~---g~~igg~~~l~~~~~ 83 (102)
+++|+.+. |+|.+ +|...|++|+ .+.++.... ....+++.+.+...++|.+..+ |..+..+..+.++..
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~--~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYE--IHPVDISKG-EQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcE--EEEecCcCC-cccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 67899886 99999 8899999999 777775321 2234567778889999999887 788888888877764
No 70
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.37 E-value=1.2e-06 Score=50.95 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=49.5
Q ss_pred CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEc-CeEEechHHHHHHHHC
Q 034150 17 ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIG-GKHIGGCDTVVEKHQG 84 (102)
Q Consensus 17 ~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~l~~~~~~ 84 (102)
++||+|.+ +|...|++|+ .+.++.... .....++ +.++...+|++..+ |..+.++..+.++.++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~--~~~~~~~~~-~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~ 81 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYK--TVPVEFPDI-PPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEE 81 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCe--EEEecCCCc-ccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHH
Confidence 68999999 8899999999 777765422 2223344 56788999999888 8999999988887653
No 71
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.36 E-value=1.6e-06 Score=53.45 Aligned_cols=49 Identities=24% Similarity=0.332 Sum_probs=32.3
Q ss_pred ceEEe-cCCCCHHHHH---HHhhCC-----CCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 10 EACCP-PLESCAFCLV---LFSSTN-----NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 10 ~vvvy-~~~~Cp~C~~---~L~~~~-----i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
++++| +.+|||+|+. +|++.. +.+. .+|+|. + .++...++..++|++++
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~--~vd~d~--~-----~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLE--IYDFDE--D-----KEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEE--EEeCCc--C-----HHHHHHcCCCcCCEEEE
Confidence 35554 7899999997 444332 3333 444443 2 35667789999999977
No 72
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.35 E-value=1.2e-06 Score=54.33 Aligned_cols=31 Identities=6% Similarity=0.089 Sum_probs=28.3
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILE 43 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~ 43 (102)
|++|+.++||+|++ +|+++|++|+ ++++..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~--~idi~~~ 34 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQ--FIDIGED 34 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceE--EEecCCC
Confidence 57999999999999 9999999999 8888765
No 73
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.34 E-value=9.5e-07 Score=54.67 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=28.7
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILE 43 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~ 43 (102)
|+||+.++|++|++ +|+++|++|+ ++++..+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~--~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFE--ERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceE--EEecCCC
Confidence 78999999999999 9999999999 8888765
No 74
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.28 E-value=5.2e-06 Score=46.76 Aligned_cols=68 Identities=10% Similarity=-0.005 Sum_probs=52.9
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
+++|..+.|+.|.+ +|+..|++|+ .+.++... .....+.+.+...++|.+..+|..+..+..+.++..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e--~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~ 71 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYE--DVRITYEE---WPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLA 71 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcE--EEEeCHHH---hhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhh
Confidence 46888899999999 8999999999 77776431 112235667888999999999999988888877653
No 75
>PHA02278 thioredoxin-like protein
Probab=98.27 E-value=5.9e-06 Score=50.30 Aligned_cols=57 Identities=12% Similarity=0.213 Sum_probs=36.5
Q ss_pred eEEecCCCCHHHHH---HHhhC----C--CCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEE
Q 034150 11 ACCPPLESCAFCLV---LFSST----N--NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~----~--i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~i 72 (102)
++-|+.+||+.|+. .|++. . +++. .+++|.... . ...+.+..+..++|++ |-||+.+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~--~vdvd~~~~--d-~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPIL--TLNLDAEDV--D-REKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEE--EEECCcccc--c-cHHHHHHCCCccccEEEEEECCEEE
Confidence 45589999999998 34322 2 2333 555554311 0 3457777899999987 5588755
No 76
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.27 E-value=7e-06 Score=46.77 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=48.9
Q ss_pred eEEecCC-------CCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHH
Q 034150 11 ACCPPLE-------SCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVE 80 (102)
Q Consensus 11 vvvy~~~-------~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~ 80 (102)
+++|..+ .||+|.+ +|...|++|+ .++++. .+.+...++|++..+|+.+.++..+.+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~--~~~~~~-----------~~~~p~g~vPvl~~~g~~l~eS~~I~~ 68 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYE--NKFGGL-----------AKRSPKGKLPFIELNGEKIADSELIID 68 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcE--EeecCc-----------ccCCCCCCCCEEEECCEEEcCHHHHHH
Confidence 4677776 5799999 8899999999 766653 145678899999999999999988877
Q ss_pred HHHC
Q 034150 81 KHQG 84 (102)
Q Consensus 81 ~~~~ 84 (102)
+.++
T Consensus 69 yL~~ 72 (75)
T cd03080 69 HLEE 72 (75)
T ss_pred HHHH
Confidence 6653
No 77
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.25 E-value=3.6e-06 Score=53.45 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=33.0
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCC-ChHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEG-DGSKIQAALA 54 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~-~~~~~~~~l~ 54 (102)
|+||+.++|+.|++ +|+++|++|+ ++++..++ +..++...+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~--~~d~~~~~~s~~eL~~~l~ 47 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYK--EQNLGKEPLTKEEILAILT 47 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeE--EEECCCCCCCHHHHHHHHH
Confidence 78999999999999 9999999999 88887652 3344444443
No 78
>PRK10387 glutaredoxin 2; Provisional
Probab=98.25 E-value=5.1e-06 Score=55.50 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=52.8
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE-EEcCeEEechHHHHHHHHC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV-FIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i-fi~g~~igg~~~l~~~~~~ 84 (102)
+++|+.+.||+|.+ +|+..|++|+ .++++.... ... .+.++..+||++ ..+|..+..+..+.++.++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~--~~~~~~~~~----~~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVE--LIVLANDDE----ATP-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeE--EEEcCCCch----hhH-HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 47899999999999 8999999999 777764321 112 345677899999 5688899999998888765
No 79
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.23 E-value=4.6e-06 Score=52.92 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=33.3
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCC-ChHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEG-DGSKIQAALA 54 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~-~~~~~~~~l~ 54 (102)
|+||+.++|+.|++ +|+++|++|+ ++++..++ +..+++..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~--~~di~~~~~s~~el~~~l~ 47 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYT--EKNIVSNSMTVDELKSILR 47 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeE--EEEeeCCcCCHHHHHHHHH
Confidence 78999999999999 9999999999 88887652 3344444443
No 80
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=98.23 E-value=4.9e-06 Score=56.14 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=52.3
Q ss_pred EEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE-EcCeEEechHHHHHHHHC
Q 034150 12 CCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF-IGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 12 vvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if-i~g~~igg~~~l~~~~~~ 84 (102)
++|+...||+|.+ +|..+|++|+ .++++.... .. ..+.++..++|++. .||..+.++..+.++.++
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e--~~~~~~~~~----~~-~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVE--KHVLLNDDE----ET-PIRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeE--EEECCCCcc----hh-HHHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 4799999999999 9999999999 776654321 11 24567788999997 788899999999887765
No 81
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.21 E-value=4.9e-06 Score=50.85 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=33.9
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCC-ChHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEG-DGSKIQAALA 54 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~-~~~~~~~~l~ 54 (102)
|+||+.++|+.|++ +|+++|++|+ ++++..++ +..+++..+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~--~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYT--FHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeE--EEecccCCCCHHHHHHHHH
Confidence 57999999999999 9999999999 88887763 4345555444
No 82
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.19 E-value=1.2e-05 Score=45.40 Aligned_cols=69 Identities=7% Similarity=-0.156 Sum_probs=52.8
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
+.+|+.+.+|+|.+ +|...|++|+ .++++.... ....+++.+.+...++|.+..+|..+.....+.++.
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~--~~~~~~~~~-~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL 72 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYE--RIDAGGQFG-GLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYL 72 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCE--EEEeccccc-cccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHh
Confidence 36899999999977 8899999999 777764321 223456677888899999999998888877776653
No 83
>PRK15113 glutathione S-transferase; Provisional
Probab=98.19 E-value=1.2e-05 Score=54.25 Aligned_cols=72 Identities=11% Similarity=0.151 Sum_probs=56.7
Q ss_pred CceEEecCC--CCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 9 NEACCPPLE--SCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 9 ~~vvvy~~~--~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
..+++|+.+ .||+|.+ +|...|++|+ .+.++.... .....++.+++....||++..||..+-....+.++.+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e--~~~v~~~~~-~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFE--LKTVDLDAG-EHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCe--EEEeCCCCc-cccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 347899975 6999999 8899999999 777776422 2234567778899999999999988888888777654
No 84
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.18 E-value=5.6e-06 Score=56.22 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=35.1
Q ss_pred ceEEecCCCCHHHHH---HHhhC---CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCe
Q 034150 10 EACCPPLESCAFCLV---LFSST---NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGK 70 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~---~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~ 70 (102)
.|++|+.+|||+|+. ++++. .-... +..+|.+.+ .++...+|..++|+++++++
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~--~~~vD~~~~-----~~~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKIL--GEMIEANEN-----PDLAEKYGVMSVPKIVINKG 195 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceE--EEEEeCCCC-----HHHHHHhCCccCCEEEEecC
Confidence 466799999999999 44432 21222 334554432 34556689999999988653
No 85
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.17 E-value=7.4e-06 Score=49.61 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=36.0
Q ss_pred CceEEecCCCCHHHHH----HHh--h----CCCCCccceEEeccCCChH---------------HHHHHHHHHhCCCCcc
Q 034150 9 NEACCPPLESCAFCLV----LFS--S----TNNKFLKSLHVLILEGDGS---------------KIQAALAEWTGQRTVP 63 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~----~L~--~----~~i~~~~~~i~id~~~~~~---------------~~~~~l~~~~g~~~vP 63 (102)
..+++|+.+|||+|++ ++. + ..-.+. ++.++.+.+.. ....++.+..|.+.+|
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtP 84 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQ--VIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTP 84 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECE--EEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSS
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeE--EEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccC
Confidence 3578899999999998 332 1 111344 45555432211 1234566778999999
Q ss_pred eEEE-c--Ce---EEechHHH
Q 034150 64 NVFI-G--GK---HIGGCDTV 78 (102)
Q Consensus 64 ~ifi-~--g~---~igg~~~l 78 (102)
++++ | |+ .+.|+-.-
T Consensus 85 t~~~~d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYLSP 105 (112)
T ss_dssp EEEECTTTSCEEEEEESS--H
T ss_pred EEEEEcCCCCEEEEecCCCCH
Confidence 8854 4 66 44566443
No 86
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.17 E-value=1.5e-05 Score=47.41 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=35.9
Q ss_pred eEEecCCCCHHHHH---HHh----hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcCeEE
Q 034150 11 ACCPPLESCAFCLV---LFS----STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g~~i 72 (102)
+++|..+||+.|+. .++ +.+-.+. ++.+|.+.+ .++....+..++|+++ -+|+.+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~--~~~id~d~~-----~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVH--FVEIDIDED-----QEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceE--EEEEECCCC-----HHHHHHCCCeeccEEEEEECCeEE
Confidence 56689999999998 443 3332344 556665433 2355567889999774 477655
No 87
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.15 E-value=1.1e-05 Score=45.82 Aligned_cols=68 Identities=6% Similarity=-0.137 Sum_probs=53.1
Q ss_pred EEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEc-CeEEechHHHHHHHH
Q 034150 12 CCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIG-GKHIGGCDTVVEKHQ 83 (102)
Q Consensus 12 vvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~l~~~~~ 83 (102)
++|+.+.||+|.+ +|...|++|+ .+.++.... ....++.+.+...++|++..+ |..+.....+.++..
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~--~~~v~~~~~--~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~ 73 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVE--IVDFQPGKE--NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVA 73 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceE--EEecccccc--cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHh
Confidence 5899999999999 8889999999 777775421 223567778889999999874 888888777777654
No 88
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.8e-05 Score=54.58 Aligned_cols=70 Identities=16% Similarity=0.010 Sum_probs=58.7
Q ss_pred CceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHh-CCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 9 NEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWT-GQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~-g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
..|.+|+.-.|||.+| .|+.+||+|+ ++++|.... -+.|.+.+ -+..||++..||+.|+-+-.+.++.++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE--~veedl~~K----s~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYE--YVEEDLTNK----SEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceE--EEecCCCCC----CHHHHHhccccccCCEEEECCceehhhHHHHHHHHh
Confidence 5699999999999999 9999999999 888887532 34455555 678999999999999988888888765
No 89
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.14 E-value=8.9e-06 Score=48.85 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=36.7
Q ss_pred cccCCc--eEEecCCCCHHHHH----HHh------hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 5 AVFVNE--ACCPPLESCAFCLV----LFS------STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 5 ~i~~~~--vvvy~~~~Cp~C~~----~L~------~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
++..++ ++.|+.+||++|+. +++ ..+-.+. ++.+|.+.+ .....++.+..+..++|++++
T Consensus 7 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~--~~~vd~~~~-~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 7 ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVV--LLRADWTKN-DPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeE--EEEEecCCC-CHHHHHHHHHcCCCCCCEEEE
Confidence 444554 56699999999999 221 1121345 556665433 222355666789999998743
No 90
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.10 E-value=2.6e-05 Score=47.78 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=40.8
Q ss_pred eEEecCCCCHHHHH---HHhhCC---CCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEEechHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTN---NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVVEK 81 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~---i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~igg~~~l~~~ 81 (102)
|+.|..+||+.|+. .|++.. -... ++.+|.+. . .+.+..+..++|++ |.+|+.++...-+..+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~--f~~vd~~~-----~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETK--FVKINAEK-----A-FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcE--EEEEEchh-----h-HHHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence 45689999999998 333221 1234 56777642 1 66777899999977 6699877644433333
No 91
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.09 E-value=2.3e-05 Score=44.58 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=50.9
Q ss_pred EEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEc-CeEEechHHHHHHHH
Q 034150 12 CCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIG-GKHIGGCDTVVEKHQ 83 (102)
Q Consensus 12 vvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~l~~~~~ 83 (102)
.+|+.+.|+ |.+ +|...|++|+ .++++.... .....++.+.++..++|++..+ |..+..+..+.++..
T Consensus 2 ~Ly~~~~~~-~~~v~~~l~~~~i~~~--~~~~~~~~~-~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~ 73 (77)
T cd03057 2 KLYYSPGAC-SLAPHIALEELGLPFE--LVRVDLRTK-TQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLA 73 (77)
T ss_pred EEEeCCCCc-hHHHHHHHHHcCCCce--EEEEecccC-ccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence 578777653 554 8899999999 777776421 2224567778899999999887 788888888877764
No 92
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.06 E-value=1.3e-05 Score=49.58 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=34.1
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccC-CChHHHHHHHH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILE-GDGSKIQAALA 54 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~-~~~~~~~~~l~ 54 (102)
.|++|+.+.|+.|++ +|+++|++|+ ++++-.+ .+..++...+.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~--~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVE--VRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcE--EeehhcCCCCHHHHHHHHH
Confidence 378999999999999 9999999999 8888765 24445555444
No 93
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.06 E-value=6.3e-05 Score=44.34 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=38.1
Q ss_pred eEEecCCCCHHHHH-------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEE
Q 034150 11 ACCPPLESCAFCLV-------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~i 72 (102)
|+.|..+||++|+. +.+.++-++. ++.+|.+.. ..+.+..+...+|++ |.+|+.+
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~--~~~vd~~~~-----~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVK--FAKVDCDEN-----KELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSE--EEEEETTTS-----HHHHHHTTCSSSSEEEEEETTEEE
T ss_pred EEEEeCCCCCccccccceecccccccccccc--cchhhhhcc-----chhhhccCCCCCCEEEEEECCcEE
Confidence 66689999999999 3333443555 667776543 346667889999988 4577654
No 94
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.9e-05 Score=45.34 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=44.5
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHH-----------HhCCCCcceEEE-cCeEEec
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAE-----------WTGQRTVPNVFI-GGKHIGG 74 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~-----------~~g~~~vP~ifi-~g~~igg 74 (102)
+-++|+...||.|.. .|++.+++|+ +++|-.+ ...+.+.|+- ..|+-.+|.+.. ||+.|=|
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd--~VeIt~S--m~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYD--FVEITES--MANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCce--eeehhhh--hhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 448999999999999 9999999999 8888764 2444333321 247788999976 5555544
No 95
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.02 E-value=4.6e-05 Score=44.89 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=36.4
Q ss_pred eEEecCCCCHHHHH---HH----hhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcCeEE
Q 034150 11 ACCPPLESCAFCLV---LF----SSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L----~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g~~i 72 (102)
++.|..+||+.|+. .+ +...-.+. ++.+|.+.. ..+.+..+..++|+++ .+|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFV--LAKVNCDAQ-----PQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEE--EEEEeccCC-----HHHHHHcCCCCCCEEEEEeCCEEe
Confidence 56688999999998 33 23332344 566666543 3466667889999885 577654
No 96
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.01 E-value=1.6e-05 Score=49.00 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=37.5
Q ss_pred eEEecCCCCHHHHH---HHhh---CCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEEec
Q 034150 11 ACCPPLESCAFCLV---LFSS---TNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHIGG 74 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~---~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~igg 74 (102)
++.|..+||+.|+. .|++ .--... ++.||.+.. ..+.+..+..++|++ |.+|+.++-
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~--f~~Vd~~~~-----~~l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETK--FIKVNAEKA-----PFLVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCE--EEEEEcccC-----HHHHHHCCCccCCEEEEEECCEEEEE
Confidence 55688899999998 3332 211234 566666532 346677889999987 568976543
No 97
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=5.1e-06 Score=53.66 Aligned_cols=55 Identities=25% Similarity=0.313 Sum_probs=37.3
Q ss_pred eEEecCCCCHHHHH---HHhhCCC----CCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEE
Q 034150 11 ACCPPLESCAFCLV---LFSSTNN----KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i----~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~i 72 (102)
+|.|..+||..|+. .|+++-- .+. ++.+|.+.+ -+|...++.+.+|++ |.||+.+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k--~~kvdtD~~-----~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFK--LYKVDTDEH-----PELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEE--EEEEccccc-----cchHhhcceeeeeEEEEEECCEEe
Confidence 55699999999999 5554322 234 455555432 236677899999987 5688754
No 98
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.00 E-value=3e-05 Score=53.48 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=17.4
Q ss_pred HhCCCCcceEEE-cCeEEechHH
Q 034150 56 WTGQRTVPNVFI-GGKHIGGCDT 77 (102)
Q Consensus 56 ~~g~~~vP~ifi-~g~~igg~~~ 77 (102)
..|.+..|.+++ ||+.+.|+..
T Consensus 197 ~lgi~gTPtiv~~~G~~~~G~~~ 219 (232)
T PRK10877 197 QFGVQGTPAIVLSNGTLVPGYQG 219 (232)
T ss_pred HcCCccccEEEEcCCeEeeCCCC
Confidence 347788999987 9999998643
No 99
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.00 E-value=6.7e-05 Score=45.24 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=36.0
Q ss_pred eEEecCCCCHHHHH---HHh----hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcCeEE
Q 034150 11 ACCPPLESCAFCLV---LFS----STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g~~i 72 (102)
|+.|..+||+.|+. .|+ ++ -... ++.+|.+.+ .. ...+.+..+...+|+++ .+|+.+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~-~~v~--~~~vd~d~~-~~-~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTC-NDVV--FLLVNGDEN-DS-TMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHC-CCCE--EEEEECCCC-hH-HHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 45589999999998 333 33 2234 556665432 21 23566667899999764 488754
No 100
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.99 E-value=4.1e-05 Score=53.02 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=52.3
Q ss_pred CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 17 ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 17 ~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
..||+|++ .|..+|++|+ ++.+|.... .+++.+++...++|++..+|..+.....+.++.++
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e--~~~vd~~~~----~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFN--VTTVDLKRK----PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEE 81 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcE--EEEECCCCC----CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHH
Confidence 57999999 8889999999 888876532 35677788889999999999999999999888874
No 101
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.99 E-value=5.2e-05 Score=47.68 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=39.8
Q ss_pred cCCc-eEE-ecCCCCHHHHH----------HHhhCCCCCccceEEeccCCChHHHHH----HHHHHhCCCCcceEEE---
Q 034150 7 FVNE-ACC-PPLESCAFCLV----------LFSSTNNKFLKSLHVLILEGDGSKIQA----ALAEWTGQRTVPNVFI--- 67 (102)
Q Consensus 7 ~~~~-vvv-y~~~~Cp~C~~----------~L~~~~i~~~~~~i~id~~~~~~~~~~----~l~~~~g~~~vP~ifi--- 67 (102)
..++ |.| |+.+||++|+. +.+..+-.|. .+.+|.+.. +++.+ ......|...+|++++
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv--~VkvD~~~~-~~~~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFV--PIKVDREER-PDVDKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEE--EEEEeCCcC-cHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 3444 444 88999999998 2222334566 667776543 33333 2233468889998754
Q ss_pred cCeEEech
Q 034150 68 GGKHIGGC 75 (102)
Q Consensus 68 ~g~~igg~ 75 (102)
+|+.+.++
T Consensus 90 ~G~~~~~~ 97 (124)
T cd02955 90 DLKPFFGG 97 (124)
T ss_pred CCCEEeee
Confidence 67777433
No 102
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.97 E-value=2.1e-05 Score=52.14 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=46.4
Q ss_pred eEEecCCCCHHHHH---HHhh---CCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEEe---chHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSS---TNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHIG---GCDTVV 79 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~---~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~ig---g~~~l~ 79 (102)
|+-|..+||+.|+. .|+. ..-... ++.|+.+. . .+....+..++|++ |.+|+.++ |++++.
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vk--F~kVd~d~-----~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~ 158 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVK--FCKIRASA-----T-GASDEFDTDALPALLVYKGGELIGNFVRVTEDL 158 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeE--EEEEeccc-----h-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhc
Confidence 44488999999998 3332 222344 67777652 1 56677889999977 56998664 444321
Q ss_pred -HHHHCCCcHHHHHhcC
Q 034150 80 -EKHQGGKLVPLLRDAG 95 (102)
Q Consensus 80 -~~~~~g~L~~~l~~~g 95 (102)
.-.....|+.+|...|
T Consensus 159 g~~f~~~~le~~L~~~g 175 (175)
T cd02987 159 GEDFDAEDLESFLVEYG 175 (175)
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 1222335556665544
No 103
>PLN02473 glutathione S-transferase
Probab=97.97 E-value=4e-05 Score=51.40 Aligned_cols=70 Identities=10% Similarity=-0.084 Sum_probs=54.6
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
+.+|+.+.+|+|.+ +|..+|++|+ .+.++.... .....++.+.+...++|++..||..+..+..+.++..
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye--~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~ 75 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFE--VIHVDLDKL-EQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYA 75 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCce--EEEecCccc-ccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHH
Confidence 67899999999998 8899999999 777765421 1223344456888999999999999999988888764
No 104
>PRK09381 trxA thioredoxin; Provisional
Probab=97.96 E-value=5.4e-05 Score=45.70 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=36.0
Q ss_pred eEEecCCCCHHHHH---HH----hhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcCeEEe
Q 034150 11 ACCPPLESCAFCLV---LF----SSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGGKHIG 73 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L----~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g~~ig 73 (102)
++.|..+|||.|+. .| ++++-.+. +..+|.+.. + .+.+..+..++|+++ -+|+.++
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~--~~~vd~~~~-~----~~~~~~~v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLT--VAKLNIDQN-P----GTAPKYGIRGIPTLLLFKNGEVAA 89 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcE--EEEEECCCC-h----hHHHhCCCCcCCEEEEEeCCeEEE
Confidence 55688999999998 33 33433344 455555432 2 244557889999874 4887664
No 105
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.95 E-value=0.0001 Score=44.34 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=33.3
Q ss_pred eEEecCCCCHHHHH---HH----hhCCC-CCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeE
Q 034150 11 ACCPPLESCAFCLV---LF----SSTNN-KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKH 71 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L----~~~~i-~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~ 71 (102)
++.|..+||++|+. .| ++++- ... +..+|.+ + . .+.+..+..++|++ |-+|+.
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~--~~~vd~d-~-~----~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLH--FATAEAD-T-I----DTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEE--EEEEeCC-C-H----HHHHHcCCCcCcEEEEEECCEE
Confidence 55689999999998 33 33331 123 4455544 2 2 24456788999966 457864
No 106
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.95 E-value=9.9e-05 Score=43.28 Aligned_cols=55 Identities=18% Similarity=0.331 Sum_probs=35.5
Q ss_pred eEEecCCCCHHHHH---HHh----hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE--cCeEE
Q 034150 11 ACCPPLESCAFCLV---LFS----STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI--GGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi--~g~~i 72 (102)
++.|..+||++|+. .|. +.+-... ++.+|.+.+ ..+.+..|..++|++++ +|+.+
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~--~~~vd~~~~-----~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVK--FVKLNVDEN-----PDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeE--EEEEECCCC-----HHHHHHcCCCcCCEEEEEeCCcEe
Confidence 56688899999998 332 3333344 556665533 23555678899998755 77644
No 107
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.94 E-value=4.3e-05 Score=43.59 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=33.9
Q ss_pred eEEecCCCCHHHHH---HHhh-----CCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE--cCeEE
Q 034150 11 ACCPPLESCAFCLV---LFSS-----TNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI--GGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~-----~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi--~g~~i 72 (102)
+++|+.+||++|+. .+++ .++.+. .++.+.. ..+.+..+...+|++++ +|+.+
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~--~i~~~~~-------~~~~~~~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFV--KVDVDEN-------PELAEEYGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEE--EEECCCC-------hhHHHhcCcccccEEEEEECCEEE
Confidence 67789999999999 4433 344444 4444432 23444567889998765 77633
No 108
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.94 E-value=1.4e-05 Score=61.11 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=40.7
Q ss_pred ceEEecCCCCHHHHH-------HHhhC-CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeE
Q 034150 10 EACCPPLESCAFCLV-------LFSST-NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKH 71 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~-------~L~~~-~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~ 71 (102)
.|.+|..++||+|.. +.... +|..+ .++.... .++.+.++..+||.++|||+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~--~i~~~~~-------~~~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAE--MIDVSHF-------PDLKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEE--EEECccc-------HHHHHhCCceecCEEEECCEE
Confidence 588999999999999 33344 67777 6666543 456667899999999999973
No 109
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.93 E-value=4.7e-05 Score=47.04 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=40.4
Q ss_pred CceEEecCCC--CHHHHH---HHhhCCCCCc--cceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEEec
Q 034150 9 NEACCPPLES--CAFCLV---LFSSTNNKFL--KSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHIGG 74 (102)
Q Consensus 9 ~~vvvy~~~~--Cp~C~~---~L~~~~i~~~--~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~igg 74 (102)
..|+.|+.+| ||.|+. +|++.--.|. ..++.+|.+.+ .++....+..++|++ |-+|+.++.
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-----~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-----QALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-----HHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 3577789996 999999 4443322221 11556665543 367778899999987 569987654
No 110
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.92 E-value=4.6e-06 Score=52.76 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=29.4
Q ss_pred ceEEecCCCCHHHHH-------HHhhC-CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 10 EACCPPLESCAFCLV-------LFSST-NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~-------~L~~~-~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
.+.+++-+|||+|.+ +++.. +++++ ++-.|.+ .++.+.+.. .|.+++|++++
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~--~i~rd~~---~el~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVR--IILRDEN---KELMDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEE--EE-HHHH---HHHTTTTTT--SS--SSEEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEE--EEEecCC---hhHHHHHHh-CCCeecCEEEE
Confidence 689999999999999 55555 67777 6666643 232222222 68899998855
No 111
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.92 E-value=5e-05 Score=48.58 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=33.6
Q ss_pred eEEecCCCCHHHHH---HHh----hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE-E--cCeEE
Q 034150 11 ACCPPLESCAFCLV---LFS----STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF-I--GGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if-i--~g~~i 72 (102)
|+.|..+||++|+. .|. .++-.+. ++.++.+.+ . ...+....+...+|+++ + +|+.+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~--~v~v~vd~~--~-~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVN--FVMLNVDNP--K-WLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCee--EEEEEcCCc--c-cHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 55689999999999 332 3332344 444444321 1 12344567889999774 4 47644
No 112
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.91 E-value=5.9e-05 Score=42.54 Aligned_cols=69 Identities=9% Similarity=-0.005 Sum_probs=50.2
Q ss_pred EEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 12 CCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 12 vvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
++|+.+. +.|.+ +|...|++|+ .+.++.... .....++.+.+...++|.+..+|..+.....+.++..+
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~--~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~ 73 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYE--LVLYDRGPG-EQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAE 73 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcE--EEEeCCCCC-ccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence 4666554 44555 8899999999 777765311 12245566778889999999999999998888887653
No 113
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.91 E-value=7.7e-05 Score=43.88 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=36.5
Q ss_pred eEEecCCCCHHHHH---HHh----hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEE
Q 034150 11 ACCPPLESCAFCLV---LFS----STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~i 72 (102)
++.|..+||+.|++ .|+ +....+. ++.+|.+.. .++.+..+..++|++ |.+|+.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~--~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVL--FLSIEAEEL-----PEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceE--EEEEccccC-----HHHHHhcCCccccEEEEEECCEEE
Confidence 56689999999999 333 2233455 667776532 345566788999976 5577644
No 114
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.88 E-value=7.6e-05 Score=45.62 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=34.6
Q ss_pred eEEecCCCCHHHHH-------HHhhC-CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcCeEE
Q 034150 11 ACCPPLESCAFCLV-------LFSST-NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~-------~L~~~-~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g~~i 72 (102)
++.|..+||+.|+. +.+.+ +.... +..+|.+.+ ..+....|..++|+++ .+|+.+
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~--~~~vd~d~~-----~~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVG--IATVNAGHE-----RRLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCce--EEEEecccc-----HHHHHHcCCccCCEEEEEECCEEE
Confidence 55689999999998 22333 12233 445554432 2355567899999774 588754
No 115
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.87 E-value=1.9e-05 Score=59.89 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=38.0
Q ss_pred ceEEecCCCCHHHHH---HHhh-----CCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEe
Q 034150 10 EACCPPLESCAFCLV---LFSS-----TNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIG 73 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~-----~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~ig 73 (102)
.|.+|.+++||||.. .+++ -+|..+ .+|... ..++.+.++..+||++|+||+.+.
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~--~id~~~-------~~~~~~~~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHT--MIDGAL-------FQDEVEARNIMAVPTVFLNGEEFG 181 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEE--EEEchh-------CHhHHHhcCCcccCEEEECCcEEE
Confidence 588999999999999 3322 234444 333322 344555689999999999997654
No 116
>PRK10996 thioredoxin 2; Provisional
Probab=97.86 E-value=0.00013 Score=46.49 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=37.1
Q ss_pred eEEecCCCCHHHHH---HH----hhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcCeEE
Q 034150 11 ACCPPLESCAFCLV---LF----SSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L----~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g~~i 72 (102)
++.|+.+||++|+. .| ++.+-.+. ++.+|.+.+ ..+.+..+..++|+++ .+|+.+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~--~~~vd~~~~-----~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVR--FVKVNTEAE-----RELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeE--EEEEeCCCC-----HHHHHhcCCCccCEEEEEECCEEE
Confidence 56689999999998 33 33333455 666766543 3456667889999774 488754
No 117
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.86 E-value=3.2e-05 Score=47.94 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=32.4
Q ss_pred eEEecCCCCHHHHH---HHh-------hCCCCCccceEEeccCCChHH--------HHHHHHHHhCCCCcceE-EEc
Q 034150 11 ACCPPLESCAFCLV---LFS-------STNNKFLKSLHVLILEGDGSK--------IQAALAEWTGQRTVPNV-FIG 68 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~-------~~~i~~~~~~i~id~~~~~~~--------~~~~l~~~~g~~~vP~i-fi~ 68 (102)
++.|+.+|||+|++ .+. .++-.+. ++.++.+.+... -...+....+..++|++ |++
T Consensus 18 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~--~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~ 92 (125)
T cd02951 18 LLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFV--VVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLD 92 (125)
T ss_pred EEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheE--EEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEc
Confidence 56689999999998 221 1111344 445554422100 12456667788999986 444
No 118
>PTZ00051 thioredoxin; Provisional
Probab=97.84 E-value=0.00012 Score=43.19 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=35.2
Q ss_pred eEEecCCCCHHHHH---HHhh---CCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcCeEEe
Q 034150 11 ACCPPLESCAFCLV---LFSS---TNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGGKHIG 73 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~---~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g~~ig 73 (102)
++.|+.+||+.|+. .|.+ ...... ++.+|.+.. ..+.+..+..++|+++ .+|+.++
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMV--FVKVDVDEL-----SEVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcE--EEEEECcch-----HHHHHHCCCceeeEEEEEeCCeEEE
Confidence 55689999999998 3333 222334 556665432 2355567888999774 4776553
No 119
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.83 E-value=0.0001 Score=44.05 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=33.1
Q ss_pred eEEecCCCCHHHHH-------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcC
Q 034150 11 ACCPPLESCAFCLV-------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGG 69 (102)
Q Consensus 11 vvvy~~~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g 69 (102)
++.|..+||+.|+. +.++.+-... +..+|.+.+ ..+.+..+.+++|+++ .+|
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~--~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVK--VGSVDCQKY-----ESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcE--EEEEECCch-----HHHHHHcCCCcccEEEEEcCC
Confidence 56689999999998 3334332234 445555432 3455567899999874 465
No 120
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.83 E-value=0.00017 Score=40.87 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=49.5
Q ss_pred cCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHH
Q 034150 15 PLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 15 ~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
....||+|.+ +|...|++|+ .+.++... .+...++++.+....+|.+..+|..+.....+.++.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e--~~~v~~~~--~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL 72 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFE--EILVPLYT--PDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYL 72 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCE--EEEeCCCC--ccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHh
Confidence 3467899999 8899999999 77776532 122456777888999999999999888888777653
No 121
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.82 E-value=7.9e-05 Score=38.94 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=34.6
Q ss_pred eEEecCCCCHHHHH---HHh-----hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcC
Q 034150 11 ACCPPLESCAFCLV---LFS-----STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGG 69 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~-----~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g 69 (102)
+++|..++|++|.+ .+. ..++.+. .++++... ..... ....+..++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~-~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFE--AVDVDEDP---ALEKE-LKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEE--EEEcCCCh---HHhhH-HHhCCCccccEEEEEe
Confidence 46789999999999 555 3455555 55555442 21222 2346778999998765
No 122
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.81 E-value=8.2e-05 Score=44.68 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=30.7
Q ss_pred eEEecCCCCHHHHH---HH----hhC---CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE
Q 034150 11 ACCPPLESCAFCLV---LF----SST---NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF 66 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L----~~~---~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if 66 (102)
++.|..+|||+|+. .| +.+ +..+. +..+|.+.. ..+.+..+..++|+++
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~--~~~vd~~~~-----~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVR--VGKLDATAY-----SSIASEFGVRGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEE--EEEEECccC-----HhHHhhcCCccccEEE
Confidence 45589999999998 22 222 33344 445554322 2455567889999884
No 123
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.80 E-value=2.8e-05 Score=58.95 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=37.8
Q ss_pred ceEEecCCCCHHHHH---HHhhC-----CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEe
Q 034150 10 EACCPPLESCAFCLV---LFSST-----NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIG 73 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~-----~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~ig 73 (102)
.|.+|.+++||||.. .+++. +|..+ . +|.. + ..++.+.++..+||++|+||+.++
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~--~--id~~----~-~~~~~~~~~v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHT--M--IDGA----L-FQDEVEALGIQGVPAVFLNGEEFH 182 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEE--E--EEch----h-CHHHHHhcCCcccCEEEECCcEEE
Confidence 588999999999999 33332 33333 2 3322 2 344556678889999999998654
No 124
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.80 E-value=8.5e-05 Score=44.70 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=31.9
Q ss_pred eEEecCCCCHHHHH---HHhhCCC---CCccceEEeccCCChHHHHHHHHHHhCCCCcceEE
Q 034150 11 ACCPPLESCAFCLV---LFSSTNN---KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF 66 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i---~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if 66 (102)
++.|..+||++|+. .|++..- ... ++.+|.+.. ...+.+..+..++|+++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~--~~~vd~~~~----~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIR--HLAIEESSI----KPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCc--eEEEECCCC----CHHHHHhcCCeecCEEE
Confidence 56689999999999 3332211 234 556665411 23466678889999774
No 125
>PRK10026 arsenate reductase; Provisional
Probab=97.80 E-value=7.8e-05 Score=47.92 Aligned_cols=46 Identities=4% Similarity=0.061 Sum_probs=36.3
Q ss_pred CCceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCC-ChHHHHHHHHH
Q 034150 8 VNEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEG-DGSKIQAALAE 55 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~-~~~~~~~~l~~ 55 (102)
|..|++|+.+.|.-|++ +|+++|++|+ ++++-.++ +..+++..+..
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~--~~d~~~~ppt~~eL~~~l~~ 50 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPT--IIHYLETPPTRDELVKLIAD 50 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcE--EEeeeCCCcCHHHHHHHHHh
Confidence 35689999999999999 9999999999 88886652 44555555553
No 126
>PLN02378 glutathione S-transferase DHAR1
Probab=97.80 E-value=0.0001 Score=49.85 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=49.9
Q ss_pred CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 17 ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 17 ~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
..||||.+ +|+..|++|+ .+.+|.... ..++.+.+...+||++..+|..+..+..+..+..+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e--~~~v~~~~~----~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~ 82 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYK--IHLINLSDK----PQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEE 82 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCe--EEEeCcccC----CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHH
Confidence 45999999 8899999999 777776432 23566788899999999999888888888887654
No 127
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.80 E-value=0.00012 Score=42.58 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=34.2
Q ss_pred ceEEecCCCCHHHHH---HH----hhC--CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 10 EACCPPLESCAFCLV---LF----SST--NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L----~~~--~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
-+++|+.+||++|+. .+ +.. +-.+. ++.++.+. ...+.+..+.+.+|++++
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~-----~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVV--VAKVDCTA-----NNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceE--EEEeeccc-----hHHHHHhCCCCCCCEEEE
Confidence 477799999999999 23 233 23344 56666542 244666678899998843
No 128
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.79 E-value=8.4e-05 Score=44.63 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=31.8
Q ss_pred eEEecCCCCHHHHH---HHh----hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 11 ACCPPLESCAFCLV---LFS----STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
++.|..+||++|+. .++ ..+-.+. ++.+|.+.+. ...+.+..+..++|++++
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~--~~~v~~~~~~---~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQ--VAAVDCDEDK---NKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCce--EEEEecCccc---cHHHHHHcCCCcCCEEEE
Confidence 67789999999998 332 2332234 4445544210 234555678899998854
No 129
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.79 E-value=0.0001 Score=43.96 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=33.7
Q ss_pred eEEecCCCCHHHHH---HH----hhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeE
Q 034150 11 ACCPPLESCAFCLV---LF----SSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKH 71 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L----~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~ 71 (102)
++.|..+||++|+. .+ +..+-.+. +..+|.+.+ ..+.+..+..++|++ |-+|+.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~--~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~ 84 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIR--IGAVNCGDD-----RMLCRSQGVNSYPSLYVFPSGMN 84 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceE--EEEEeCCcc-----HHHHHHcCCCccCEEEEEcCCCC
Confidence 56689999999998 33 23322234 445555432 235555788899988 446653
No 130
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=5.8e-05 Score=53.68 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=41.9
Q ss_pred eEEecCCCCHHHHH---HHh----hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEEechH
Q 034150 11 ACCPPLESCAFCLV---LFS----STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCD 76 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~igg~~ 76 (102)
+|.|..|||+.|+. .|+ +++=.|. ...+|.+.+ ..+....|.+++|+| |++|+.|-||.
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~--LakvN~D~~-----p~vAaqfgiqsIPtV~af~dGqpVdgF~ 114 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFK--LAKVNCDAE-----PMVAAQFGVQSIPTVYAFKDGQPVDGFQ 114 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceE--EEEecCCcc-----hhHHHHhCcCcCCeEEEeeCCcCccccC
Confidence 45588999999999 443 4444555 555555432 336667899999988 78999888773
No 131
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.78 E-value=5.1e-05 Score=45.16 Aligned_cols=57 Identities=9% Similarity=0.017 Sum_probs=35.7
Q ss_pred cCCceEEecCCCCHHHHH---HHhhC-----CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE--cCe
Q 034150 7 FVNEACCPPLESCAFCLV---LFSST-----NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI--GGK 70 (102)
Q Consensus 7 ~~~~vvvy~~~~Cp~C~~---~L~~~-----~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi--~g~ 70 (102)
....++.|..+|||+|+. .+++. +..+. +..+|.+.+ + .+.+..+..++|++++ +|+
T Consensus 16 ~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~--~~~vd~~~~-~----~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 16 EGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGIN--VAKVDVTQE-P----GLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeE--EEEEEccCC-H----hHHHHcCCcccCEEEEeCCCC
Confidence 334578899999999999 33221 22344 445555432 2 3555678899998864 664
No 132
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.77 E-value=0.00015 Score=44.81 Aligned_cols=54 Identities=9% Similarity=-0.058 Sum_probs=32.6
Q ss_pred eEEecCCCCHHHHH---HHhhC----CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCe
Q 034150 11 ACCPPLESCAFCLV---LFSST----NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGK 70 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~----~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~ 70 (102)
++.|..+||++|+. .+++. .-... +..||.+.+ .+...+..+..++|++ |.+|+
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~--~~~Vd~d~~----~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVL--FVAINCWWP----QGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeE--EEEEECCCC----hHHHHHhcCCcccCEEEEEECCc
Confidence 56699999999998 33322 21233 455555432 2223345778899977 55765
No 133
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.75 E-value=8.4e-05 Score=50.45 Aligned_cols=56 Identities=25% Similarity=0.296 Sum_probs=37.6
Q ss_pred ceEEecC---CCCHHHHH---HHhh----C-CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE--cCeEE
Q 034150 10 EACCPPL---ESCAFCLV---LFSS----T-NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI--GGKHI 72 (102)
Q Consensus 10 ~vvvy~~---~~Cp~C~~---~L~~----~-~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi--~g~~i 72 (102)
.+++|+. +|||+|+. ++++ + ++.+. ++++|.+. ...+.+.++..++|++.+ +|+.+
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~--~v~vd~~~-----~~~l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLE--IYDFDTPE-----DKEEAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEE--EEecCCcc-----cHHHHHHcCCCccCEEEEEeCCeee
Confidence 5778888 99999998 4433 2 23444 67777543 235666789999998855 65443
No 134
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=5.3e-05 Score=46.42 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=35.5
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCc-cceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeE
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFL-KSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKH 71 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~-~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~ 71 (102)
|+-|+.+||+.|+. .+.++..+|. ..++.+|.+. -..+.+-.+...+|++ +.+|+.
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-----~~~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-----LEEVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-----CHhHHHhcCceEeeEEEEEECCEE
Confidence 34489999999999 5554443332 1255666653 2345555788899987 457753
No 135
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.74 E-value=0.00015 Score=50.96 Aligned_cols=62 Identities=15% Similarity=0.306 Sum_probs=49.4
Q ss_pred CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 17 ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 17 ~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
..||+|.+ +|..+|++|+ ++.++.... .+++.+++....+|++..+|..+..+..+.++.++
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye--~~~vdl~~~----~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e 135 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYD--MKLVDLTNK----PEWFLKISPEGKVPVVKLDEKWVADSDVITQALEE 135 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCE--EEEeCcCcC----CHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence 45999999 8899999999 777766432 34466778889999999999888888888877653
No 136
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.71 E-value=8.4e-05 Score=46.12 Aligned_cols=54 Identities=19% Similarity=0.385 Sum_probs=34.2
Q ss_pred ecCCCCHHHHH---HHhhCCCCCc--cceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEE
Q 034150 14 PPLESCAFCLV---LFSSTNNKFL--KSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHI 72 (102)
Q Consensus 14 y~~~~Cp~C~~---~L~~~~i~~~--~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~i 72 (102)
|+.+|||.|+. +|.+.--+|. ..++.+|.+. ..++.+..+....|+. |-+|+|+
T Consensus 21 F~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe-----v~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 21 FGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK-----VPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc-----cHHHHHhcCceeCcEEEEEECCcEE
Confidence 99999999999 5555432221 1144555443 2346666777778865 5688876
No 137
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.71 E-value=0.00026 Score=45.97 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=33.9
Q ss_pred eEEecCCCCHHHHH---HH----hhCC-CCCccceEEeccCCChHHHHHHHHHHhCCCC------cceE--EEcCeEEe
Q 034150 11 ACCPPLESCAFCLV---LF----SSTN-NKFLKSLHVLILEGDGSKIQAALAEWTGQRT------VPNV--FIGGKHIG 73 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L----~~~~-i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~------vP~i--fi~g~~ig 73 (102)
++.|..+|||.|+. .+ ++.+ -.+. ++.+|.+.+ ++ +.+..+..+ +|++ |.+|+.++
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~--f~~VDvd~~-~~----la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLK--FGKIDIGRF-PN----VAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeE--EEEEECCCC-HH----HHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 67799999999999 33 3332 2244 556665543 33 333344444 8977 66888664
No 138
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.71 E-value=2.9e-05 Score=48.13 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=30.4
Q ss_pred eEEecCCCCHHHHH---HHhh------CCCCCccceEEeccCCChHHHHHHHHHHhCCC--CcceEE-E--cCeEEe
Q 034150 11 ACCPPLESCAFCLV---LFSS------TNNKFLKSLHVLILEGDGSKIQAALAEWTGQR--TVPNVF-I--GGKHIG 73 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~------~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~--~vP~if-i--~g~~ig 73 (102)
++.|+.+||++|+. .+.+ .+..|. .++++.+.+ .... ..+.. .+|+++ + +|+.++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv--~v~vd~~~~--~~~~----~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFV--MVNLEDDEE--PKDE----EFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEE--EEEecCCCC--chhh----hcccCCCccceEEEECCCCCCch
Confidence 44589999999999 3322 233444 666665422 1111 22332 489774 4 565544
No 139
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.71 E-value=0.00011 Score=44.62 Aligned_cols=52 Identities=12% Similarity=0.241 Sum_probs=30.8
Q ss_pred ceEEecCCCCHHHHH---HHhh----CC-CCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE
Q 034150 10 EACCPPLESCAFCLV---LFSS----TN-NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF 66 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~----~~-i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if 66 (102)
-++.|..+|||+|++ .+.+ +. ..+. +..+|.+.+. .....+..+...+|+++
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~--~~~vd~d~~~---~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVK--VAKFNADGEQ---REFAKEELQLKSFPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeE--EEEEECCccc---hhhHHhhcCCCcCCEEE
Confidence 366799999999999 3322 22 2244 4455544211 12233457888999874
No 140
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=97.68 E-value=9.9e-05 Score=49.24 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=53.1
Q ss_pred EecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 13 CPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 13 vy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
+|+...||+|.+ +|...|++|+ .+.++....+.....++.+.+...++|++..||..+.....+..+..+
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~--~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~ 74 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYE--YVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEE 74 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCce--EEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHH
Confidence 688888999988 8899999999 766664211111134567778899999999999999888888776654
No 141
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.65 E-value=0.00029 Score=41.71 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=31.4
Q ss_pred eEEecCCCCHHHHH---HHh----hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE
Q 034150 11 ACCPPLESCAFCLV---LFS----STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF 66 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if 66 (102)
+++|..+||++|+. .+. +..-.+. +..+|.+.. ..+.+..+.+++|+++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~--~~~id~~~~-----~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVK--VGAVDADVH-----QSLAQQYGVRGFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCce--EEEEECcch-----HHHHHHCCCCccCEEE
Confidence 56788999999999 332 2222344 556665432 3455567889999774
No 142
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00018 Score=47.97 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=59.4
Q ss_pred ceEEe--cCCCCHHHHH-HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCC
Q 034150 10 EACCP--PLESCAFCLV-LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGG 85 (102)
Q Consensus 10 ~vvvy--~~~~Cp~C~~-~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g 85 (102)
+-++| ..+.|.+-.+ .|.-+||+|+ ++.++.-..+.+.-.++++.+...+||.+.+||..+-.+-.+.++.++-
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYe--y~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYE--YKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcc--eeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhc
Confidence 45555 5689999999 8899999999 8888776554555668888899999999999999988877777776653
No 143
>PRK10853 putative reductase; Provisional
Probab=97.63 E-value=0.00019 Score=44.78 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=33.6
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccC-CChHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILE-GDGSKIQAALA 54 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~-~~~~~~~~~l~ 54 (102)
|++|+.+.|.-|++ +|+++|++|+ ++++-.. .+..++...+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~--~~d~~k~p~s~~eL~~~l~ 47 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYR--FHDYRVDGLDSELLQGFID 47 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcE--EeehccCCcCHHHHHHHHH
Confidence 78999999999999 9999999999 8888665 24445555544
No 144
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.62 E-value=0.00014 Score=43.16 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=33.7
Q ss_pred eEEecCCCCHHHHH-------HHhhCC--CCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEE
Q 034150 11 ACCPPLESCAFCLV-------LFSSTN--NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~-------~L~~~~--i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~i 72 (102)
++.|..+|||+|+. +.+... -.+. +..+|.+.+ ....+.+..|.+++|++ |-+|+.+
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~--~~~id~~~~---~~~~~~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGV--LAAVDCTKP---EHDALKEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceE--EEEEECCCC---ccHHHHHhCCCccccEEEEEeCCCee
Confidence 67799999999999 222222 2233 445554421 02335555788899987 4466643
No 145
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00023 Score=44.33 Aligned_cols=43 Identities=7% Similarity=0.121 Sum_probs=33.9
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccC-CChHHHHHHHH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILE-GDGSKIQAALA 54 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~-~~~~~~~~~l~ 54 (102)
-|++|+.+.|.-|++ +|+++||+|+ ++++... .+..++.+.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~--~~~y~~~~~s~~eL~~~l~ 48 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYT--FIDYLKTPPSREELKKILS 48 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcE--EEEeecCCCCHHHHHHHHH
Confidence 389999999999999 9999999999 8888765 33344444444
No 146
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.62 E-value=0.00018 Score=44.97 Aligned_cols=55 Identities=7% Similarity=0.001 Sum_probs=32.4
Q ss_pred eEEecC-------CCCHHHHH-------HHhhCCCCCccceEEeccCCCh--HHHHHHHHHHhCCC-CcceEEE
Q 034150 11 ACCPPL-------ESCAFCLV-------LFSSTNNKFLKSLHVLILEGDG--SKIQAALAEWTGQR-TVPNVFI 67 (102)
Q Consensus 11 vvvy~~-------~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~~~--~~~~~~l~~~~g~~-~vP~ifi 67 (102)
++.|.. +|||.|+. +.++..-... ++.||.+... ......++...+.. ++|++++
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~--fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCV--FIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCE--EEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 555888 89999998 4444442344 5555543210 01124555566766 9998854
No 147
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.61 E-value=0.00024 Score=44.82 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=34.1
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccC-CChHHHHHHHH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILE-GDGSKIQAALA 54 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~-~~~~~~~~~l~ 54 (102)
.+++|+.+.|.-|++ +|+++|++|+ ++++-.. .+..+++..+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~--~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVE--VQDILKEPWHADTLRPYFG 48 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcE--EEeccCCCcCHHHHHHHHH
Confidence 478999999999999 9999999999 8888654 34445555444
No 148
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.58 E-value=0.00037 Score=40.97 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=32.1
Q ss_pred eEEecCCCCHHHHH---HHhh----CCC--CCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 11 ACCPPLESCAFCLV---LFSS----TNN--KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~----~~i--~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
+++|+.+||+.|+. .++. ..- .+. +..+|.+.+ ..+.+..+.+.+|.+++
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~-----~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIV--LAKVDATAE-----KDLASRFGVSGFPTIKF 75 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceE--EEEEEccch-----HHHHHhCCCCcCCEEEE
Confidence 77899999999998 3322 221 233 555555432 34555678899998843
No 149
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.56 E-value=0.00024 Score=47.77 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=43.7
Q ss_pred eEEecCCCCHHHHH---HHhhCC---CCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEEe---chHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTN---NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHIG---GCDTVV 79 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~---i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~ig---g~~~l~ 79 (102)
|+-|+.+||+.|+. .|+..- -... ++.++.+. .....+...+|++ |.+|+.++ |+.++-
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vk--FvkI~ad~--------~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~g 175 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTK--FVKIISTQ--------CIPNYPDKNLPTILVYRNGDIVKQFIGLLEFG 175 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCE--EEEEEhHH--------hHhhCCCCCCCEEEEEECCEEEEEEeCchhhC
Confidence 34489999999999 443322 2234 66777541 1345788999987 55887553 444431
Q ss_pred H-HHHCCCcHHHHHhcC
Q 034150 80 E-KHQGGKLVPLLRDAG 95 (102)
Q Consensus 80 ~-~~~~g~L~~~l~~~g 95 (102)
- -....+|+.+|...|
T Consensus 176 g~~~~~~~lE~~L~~~g 192 (192)
T cd02988 176 GMNTTMEDLEWLLVQVG 192 (192)
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 0 112235566665544
No 150
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.55 E-value=0.0003 Score=43.31 Aligned_cols=42 Identities=10% Similarity=0.035 Sum_probs=32.6
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCC-ChHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEG-DGSKIQAALA 54 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~-~~~~~~~~l~ 54 (102)
|++|+.+.|+-|++ +|+++|++|+ ++|+-..+ +..++...+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~--~~di~~~~~t~~el~~~l~ 46 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPE--IVEYLKTPPTAAELRELLA 46 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeE--EEecccCCcCHHHHHHHHH
Confidence 57999999999999 9999999999 88886543 3344444443
No 151
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00029 Score=47.23 Aligned_cols=72 Identities=6% Similarity=0.016 Sum_probs=56.9
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCe-EEechHHHHHHHHCCC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGK-HIGGCDTVVEKHQGGK 86 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~-~igg~~~l~~~~~~g~ 86 (102)
+++|+.+.+|+|.+ .|..+|++|+ .+.++... .....++...+....||++..++- .+-.+..+.++.++.-
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye--~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~ 76 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYE--IVLVDLDA--EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERY 76 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCce--EEEeCccc--ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhC
Confidence 36788888899999 8889999999 88887763 233566778899999999988775 7888888888776543
No 152
>PRK10357 putative glutathione S-transferase; Provisional
Probab=97.54 E-value=0.00041 Score=46.08 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=51.2
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE-EcCeEEechHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF-IGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if-i~g~~igg~~~l~~~~~ 83 (102)
+.+|+...||++++ +|+..|++|+ .++++.... ...+.+.+...++|++. .+|..+-....+.++..
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye--~~~~~~~~~----~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~ 71 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFE--FVNELPYNA----DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIE 71 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCe--EEecCCCCC----chhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHH
Confidence 36899999999988 8999999999 777775432 22344567889999998 46777777777777655
No 153
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.54 E-value=0.00031 Score=43.40 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=33.4
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccC-CChHHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILE-GDGSKIQAALAE 55 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~-~~~~~~~~~l~~ 55 (102)
|++|+.+.|+-|++ +|+++|++|+ ++|+... ....+++..+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~--~~di~~~p~t~~el~~~l~~ 47 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPE--VVKYLKNPPTKSELEAIFAK 47 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeE--EEeccCCCcCHHHHHHHHHH
Confidence 57999999999999 9999999999 8888765 333444444443
No 154
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=97.51 E-value=0.00043 Score=41.03 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=38.4
Q ss_pred EEecCC-CCHHHHH---------HHhh-----C-CCCCccceEEeccCCChHHHHHHHHHHh-CCCCcceEEEcCeEEe-
Q 034150 12 CCPPLE-SCAFCLV---------LFSS-----T-NNKFLKSLHVLILEGDGSKIQAALAEWT-GQRTVPNVFIGGKHIG- 73 (102)
Q Consensus 12 vvy~~~-~Cp~C~~---------~L~~-----~-~i~~~~~~i~id~~~~~~~~~~~l~~~~-g~~~vP~ifi~g~~ig- 73 (102)
+||+.. -|+.|.. +|++ + +.+|.++++||....+..+-++...++- .---.|.|.++|+.||
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 467765 5888865 4432 2 3445544778877654334444445544 3456799999999998
Q ss_pred chHHHHHHH
Q 034150 74 GCDTVVEKH 82 (102)
Q Consensus 74 g~~~l~~~~ 82 (102)
|.-.|+...
T Consensus 81 Gnp~LK~I~ 89 (93)
T PF07315_consen 81 GNPQLKDIY 89 (93)
T ss_dssp SS--HHHHH
T ss_pred CCccHHHHH
Confidence 777666554
No 155
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.51 E-value=0.00031 Score=41.50 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=34.0
Q ss_pred eEEecCCCCHHHHH---HH----hhCCC---CCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcCeEE
Q 034150 11 ACCPPLESCAFCLV---LF----SSTNN---KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L----~~~~i---~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g~~i 72 (102)
++.|..+||+.|+. .+ ++..- .+. +..+|.+.+ ..+.+..+..++|+++ .+|+.+
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~--~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~ 86 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVK--IAKVDCTQH-----RELCSEFQVRGYPTLLLFKDGEKV 86 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEE--EEEEECCCC-----hhhHhhcCCCcCCEEEEEeCCCee
Confidence 56689999999998 22 22221 344 556665433 2344557889999864 466533
No 156
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.49 E-value=0.00053 Score=40.50 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=32.6
Q ss_pred eEEecCCCCHHHHH---HH----hhCC--CCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 11 ACCPPLESCAFCLV---LF----SSTN--NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L----~~~~--i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
++.|+.+||++|+. .+ +... -.+. +..+|.+.. ...+.+..+.+++|.+++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~--~~~id~~~~----~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVV--IAKVDADEA----NKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEE--EEEEECCCc----chhhHHhCCCCCcCEEEE
Confidence 67799999999998 22 2332 2345 666665531 133455568889998854
No 157
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.48 E-value=0.00033 Score=42.26 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=33.7
Q ss_pred eEEecCCCCHHHHH---HHh----hCC--C----CCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcCe
Q 034150 11 ACCPPLESCAFCLV---LFS----STN--N----KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGGK 70 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~~--i----~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g~ 70 (102)
++.|..+||++|+. .++ ... . .+. +..+|.+.+ ..+.+..|..++|+++ -+|+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~--~~~vd~d~~-----~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVV--WGKVDCDKE-----SDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEE--EEEEECCCC-----HHHHHhCCCCcCCEEEEEeCCc
Confidence 56689999999998 332 210 0 133 445665532 3466678999999874 4665
No 158
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.45 E-value=0.00088 Score=43.72 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=48.8
Q ss_pred ecCCCCHHHHH----------HHhhCCCCCccceEEeccCCChHHHHHHHH--------------------HHhCCCCcc
Q 034150 14 PPLESCAFCLV----------LFSSTNNKFLKSLHVLILEGDGSKIQAALA--------------------EWTGQRTVP 63 (102)
Q Consensus 14 y~~~~Cp~C~~----------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~--------------------~~~g~~~vP 63 (102)
|+..|||.|+. .+++.+-+++ ++=|+.+.+..++.+++. ..++..++|
T Consensus 40 FsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fE--VvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP 117 (157)
T KOG2501|consen 40 FSAHWCPPCRDFTPILKDFYEELKDNAAPFE--VVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIP 117 (157)
T ss_pred EEEEECCchhhCCchHHHHHHHHHhcCCceE--EEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCc
Confidence 68899999999 4455666788 777776655555444444 345567778
Q ss_pred eEEE---cCeEEe-chHHHHHHHHCCCcHHHHHhcC
Q 034150 64 NVFI---GGKHIG-GCDTVVEKHQGGKLVPLLRDAG 95 (102)
Q Consensus 64 ~ifi---~g~~ig-g~~~l~~~~~~g~L~~~l~~~g 95 (102)
.+.+ +|+.|- .........-+.+...++.++.
T Consensus 118 ~l~i~~~dG~~v~~d~r~~v~~~g~~~~~a~~~ew~ 153 (157)
T KOG2501|consen 118 ALVILKPDGTVVTEDARLLVQLGGSADPKALVDEWK 153 (157)
T ss_pred eeEEecCCCCEehHhhHHHHHhhcccCHHHHHHHHH
Confidence 7754 665542 3333333333356666665543
No 159
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.43 E-value=0.00056 Score=45.68 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=34.3
Q ss_pred ceEEecCCCCHHHHH-------HHhhCCCCCccceEEeccCCC--hHHH----HHHHHHHhCC--CCcceEEE
Q 034150 10 EACCPPLESCAFCLV-------LFSSTNNKFLKSLHVLILEGD--GSKI----QAALAEWTGQ--RTVPNVFI 67 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~~--~~~~----~~~l~~~~g~--~~vP~ifi 67 (102)
++++|..+|||+|++ +.+++++.+- -|.+|...+ -+.+ ...+...+|. ..+|+.|+
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi--~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVF--PYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEE--EEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 488999999999999 4455666555 566664310 0000 1234444563 68998865
No 160
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00024 Score=47.37 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=50.6
Q ss_pred EEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE-EcCeEEechHHHHHHHHCC
Q 034150 12 CCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF-IGGKHIGGCDTVVEKHQGG 85 (102)
Q Consensus 12 vvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if-i~g~~igg~~~l~~~~~~g 85 (102)
.+|..+.||||.+ ++.-.||+++ ..-++.+++.. =-+.-|...||.+. -+|++++.+-++..+..+-
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve--~~vL~nDDe~T-----p~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~ 72 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVE--LHVLLNDDEET-----PIRMIGQKQVPILQKEDGRAMPESLDIVHYVDEL 72 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChh--hheeccCcccC-----hhhhhcccccceEEccccccchhhhHHHHHHHHh
Confidence 5788999999999 7788899999 66666654322 22356889999886 5889999888877766543
No 161
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.41 E-value=0.0018 Score=40.24 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=33.8
Q ss_pred eEEecCCCCHHHHH---HHh----h---CCCCCccceEEeccCCChHHH-------------------HHHHHHHhCCCC
Q 034150 11 ACCPPLESCAFCLV---LFS----S---TNNKFLKSLHVLILEGDGSKI-------------------QAALAEWTGQRT 61 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~---~~i~~~~~~i~id~~~~~~~~-------------------~~~l~~~~g~~~ 61 (102)
++.|..+|||.|++ .|. + .+-.++...+.+|. +.... ...+.+..|...
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 99 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR--DEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEG 99 (131)
T ss_pred EEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC--CHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCC
Confidence 44477899999998 322 2 22234411444443 22222 234555678889
Q ss_pred cceEEE---cCeEE
Q 034150 62 VPNVFI---GGKHI 72 (102)
Q Consensus 62 vP~ifi---~g~~i 72 (102)
+|.+++ +|+.+
T Consensus 100 ~P~~~lid~~G~i~ 113 (131)
T cd03009 100 IPTLIILDADGEVV 113 (131)
T ss_pred CCEEEEECCCCCEE
Confidence 998864 56554
No 162
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.39 E-value=0.001 Score=45.83 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=35.7
Q ss_pred eEEecCCCCHHHHH---HHh----hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEE
Q 034150 11 ACCPPLESCAFCLV---LFS----STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~i 72 (102)
++.|..+||++|+. .++ +++-... +..+|.+.+ ..+.+..+..++|++ |.+|+.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~--~~~VD~~~~-----~~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVN--VADLDATRA-----LNLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeE--EEEecCccc-----HHHHHHcCCCcCCEEEEEECCEEE
Confidence 67789999999998 332 3332233 445555432 346667889999977 4578754
No 163
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.0009 Score=45.55 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=48.0
Q ss_pred CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 17 ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 17 ~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
-.||+|++ .|..++++|..+.+|+... .++++.+++.+.+|.+-.|++++-..+.+.+..+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~k------p~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRK------PEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCC------cHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHH
Confidence 46999999 6678899998334444433 4678889999999999999999999888776554
No 164
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=97.38 E-value=0.0009 Score=45.02 Aligned_cols=70 Identities=7% Similarity=0.038 Sum_probs=51.0
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE-----cCe--EEechHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI-----GGK--HIGGCDTVVE 80 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi-----~g~--~igg~~~l~~ 80 (102)
+++|..+ +|+|.+ +|...|++|+ .++++.... .....++.+++....||++.. ||+ .+-.+.-+.+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e--~~~v~~~~~-~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~ 77 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYR--LIKVDLGKG-GQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILL 77 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcE--EEEecCccc-ccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHH
Confidence 4678766 577777 8999999999 777776422 222356777899999999987 453 5777777777
Q ss_pred HHHC
Q 034150 81 KHQG 84 (102)
Q Consensus 81 ~~~~ 84 (102)
+..+
T Consensus 78 YL~~ 81 (215)
T PRK13972 78 YLAE 81 (215)
T ss_pred HHHH
Confidence 7654
No 165
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.36 E-value=0.0005 Score=39.69 Aligned_cols=49 Identities=18% Similarity=0.355 Sum_probs=29.4
Q ss_pred eEEecCCCCHHHHH----HHhh------CCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 11 ACCPPLESCAFCLV----LFSS------TNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 11 vvvy~~~~Cp~C~~----~L~~------~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
++.|+.+||++|+. ++.. ..-.|. .+.+|.+...... .+.. ..+|++++
T Consensus 21 lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv--~v~vd~~~~~~~~--~~~~----~~~P~~~~ 79 (82)
T PF13899_consen 21 LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFV--LVKVDVDDEDPNA--QFDR----QGYPTFFF 79 (82)
T ss_dssp EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSE--EEEEETTTHHHHH--HHHH----CSSSEEEE
T ss_pred EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEE--EEEEEcCCCChhH--HhCC----ccCCEEEE
Confidence 56689999999999 3232 334566 7777765322222 2222 34898864
No 166
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.36 E-value=0.0011 Score=44.27 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=19.5
Q ss_pred CCceEEecCCCCHHHHH---HHh--hCCCCCc
Q 034150 8 VNEACCPPLESCAFCLV---LFS--STNNKFL 34 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~---~L~--~~~i~~~ 34 (102)
...|++|+.+.||||++ .+. ..++.+.
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~ 109 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVR 109 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEE
Confidence 34688999999999999 444 3345444
No 167
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=97.35 E-value=0.0029 Score=36.02 Aligned_cols=71 Identities=8% Similarity=-0.001 Sum_probs=51.3
Q ss_pred ceEEecCCCCHHHHH-HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCC-CCcceEEEc-CeEEechHHHHHHHH
Q 034150 10 EACCPPLESCAFCLV-LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQ-RTVPNVFIG-GKHIGGCDTVVEKHQ 83 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~-~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~-~~vP~ifi~-g~~igg~~~l~~~~~ 83 (102)
++.+|.-+.+....+ +|+..|++|+ .+.++.... ....+++.+.... ..+|.+..+ |..+.....+..+..
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e--~~~v~~~~~-~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa 75 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYE--DVRVDFEKG-EHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLA 75 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EE--EEEEETTTT-GGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCc--eEEEecccc-cccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhC
Confidence 367788888666666 9999999999 777775432 2223667777777 899999999 999988877776653
No 168
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.35 E-value=0.001 Score=43.17 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=33.6
Q ss_pred CCceEEecCCCCHHHHH---HH----hhCCCCCccceEEeccCCCh--HH----HHHHHHHHh---CCCCcceEEE
Q 034150 8 VNEACCPPLESCAFCLV---LF----SSTNNKFLKSLHVLILEGDG--SK----IQAALAEWT---GQRTVPNVFI 67 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~---~L----~~~~i~~~~~~i~id~~~~~--~~----~~~~l~~~~---g~~~vP~ifi 67 (102)
...++.|..+|||+|++ .| +++++.+- .+++|..... +. ....+.... +...+|+.|+
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi--~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVY--AFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEE--EEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 34688899999999999 33 34555554 5666643100 00 012223334 6678998754
No 169
>PLN02395 glutathione S-transferase
Probab=97.34 E-value=0.0012 Score=44.14 Aligned_cols=70 Identities=10% Similarity=-0.076 Sum_probs=53.0
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
+++|+.+.|+ +.+ +|...|++|+ .+.++.... .....++.+.+...+||++..+|..+..+..+.++..+
T Consensus 3 ~~ly~~~~~~-~~rv~~~L~e~gl~~e--~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~ 75 (215)
T PLN02395 3 LKVYGPAFAS-PKRALVTLIEKGVEFE--TVPVDLMKG-EHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAE 75 (215)
T ss_pred EEEEcCCcCc-HHHHHHHHHHcCCCce--EEEeccccC-CcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence 6889877765 454 8899999999 777765321 12234677788899999999999888888888887764
No 170
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.33 E-value=0.0021 Score=41.46 Aligned_cols=13 Identities=8% Similarity=-0.056 Sum_probs=11.3
Q ss_pred EEecCCCCHHHHH
Q 034150 12 CCPPLESCAFCLV 24 (102)
Q Consensus 12 vvy~~~~Cp~C~~ 24 (102)
+-|..+|||.|++
T Consensus 30 L~FwAsWCppCr~ 42 (146)
T cd03008 30 LFFGAVVSPQCQL 42 (146)
T ss_pred EEEECCCChhHHH
Confidence 3488999999999
No 171
>PRK11752 putative S-transferase; Provisional
Probab=97.29 E-value=0.0013 Score=46.05 Aligned_cols=74 Identities=4% Similarity=0.002 Sum_probs=53.8
Q ss_pred cCCceEEecCCCCHHHHH---HHhhC------CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcC----eEEe
Q 034150 7 FVNEACCPPLESCAFCLV---LFSST------NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGG----KHIG 73 (102)
Q Consensus 7 ~~~~vvvy~~~~Cp~C~~---~L~~~------~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g----~~ig 73 (102)
..+++++|+.+ +|+|.+ +|++. |++|+ .+.++.... .....++.+++...+||++..++ ..+.
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye--~~~v~~~~~-~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ 116 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYD--AWLIRIGEG-DQFSSGFVEINPNSKIPALLDRSGNPPIRVF 116 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceE--EEEecCccc-cccCHHHHhhCCCCCCCEEEeCCCCCCeEEE
Confidence 34579999965 999999 67775 88899 777765421 22245677788899999998752 5788
Q ss_pred chHHHHHHHHC
Q 034150 74 GCDTVVEKHQG 84 (102)
Q Consensus 74 g~~~l~~~~~~ 84 (102)
.+..+.++..+
T Consensus 117 ES~AIl~YL~~ 127 (264)
T PRK11752 117 ESGAILLYLAE 127 (264)
T ss_pred cHHHHHHHHHH
Confidence 88888887654
No 172
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.26 E-value=0.00056 Score=48.25 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=34.8
Q ss_pred ceEEecCCCCHHHHH-------HHhhCCCCCccceEEeccCCCh----HHHHHHHHHHhCCCCcceEEE
Q 034150 10 EACCPPLESCAFCLV-------LFSSTNNKFLKSLHVLILEGDG----SKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~~~----~~~~~~l~~~~g~~~vP~ifi 67 (102)
-++.|..+|||+|+. +-+++|+.+. .|++|..... ......+.+..|..++|++|+
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi--~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVL--PVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEE--EEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 466689999999998 3345665555 6666653210 000123455678999998854
No 173
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.24 E-value=0.00077 Score=42.14 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=33.5
Q ss_pred EEecCCCCHH--HHH-------------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEEe
Q 034150 12 CCPPLESCAF--CLV-------------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHIG 73 (102)
Q Consensus 12 vvy~~~~Cp~--C~~-------------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~ig 73 (102)
+.|...||+. |+. +|+..++.+- .||.+.+ ..|.+..|.+++|++ |.||+.+.
T Consensus 32 v~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~----kVD~d~~-----~~La~~~~I~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 32 LYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFG----LVDSKKD-----AKVAKKLGLDEEDSIYVFKDDEVIE 101 (120)
T ss_pred EEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEE----EEeCCCC-----HHHHHHcCCccccEEEEEECCEEEE
Confidence 3466677765 982 3333455444 5555432 457778999999987 67998653
No 174
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.24 E-value=0.0016 Score=40.02 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=30.4
Q ss_pred eEEecCCCCHHHHH---HHhhCCC-------CCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 11 ACCPPLESCAFCLV---LFSSTNN-------KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i-------~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
++.|..+||+.|+. .+++..- .+. +..+|.+.+ ....+.+..+.+.+|++++
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~--~~~vd~~~~---~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVR--VAAVDCADE---ENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceE--EEEEeccch---hhHHHHHhCCCCCCCEEEE
Confidence 56689999999998 3222111 123 445553211 1234555678899998854
No 175
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.20 E-value=0.0014 Score=38.69 Aligned_cols=49 Identities=6% Similarity=0.150 Sum_probs=29.1
Q ss_pred eEEecCCCCHHHHH---HHh----hC-C-CCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 11 ACCPPLESCAFCLV---LFS----ST-N-NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~-~-i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
++.|..+||++|+. .++ .. + ..+. +..+|.+.+ .+....+..++|++++
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~--~~~id~~~~------~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVV--IAKMDATAN------DVPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEE--EEEEeCcch------hhhhhccCCCCCEEEE
Confidence 56689999999999 222 21 1 2344 555665421 2333445689998754
No 176
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=97.20 E-value=0.0047 Score=35.38 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=45.7
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHH--HhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAE--WTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~--~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
+++|..+..+.|.+ +|...|++|+ .+.++.. .+.. .+.. .....++|++.+||..+.....+..+..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e--~~~v~~~---~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~ 73 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFE--EKFIESA---EDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIA 73 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcE--EEEeccH---HHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHHHH
Confidence 46787777666655 8999999999 7777642 1111 1111 1135699999999988888877777654
No 177
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.004 Score=37.27 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=47.7
Q ss_pred CCceEEecCC-CCHHHHH---------HHhh----C--CCCCccceEEeccCCChHHHHHHHHHH-hCCCCcceEEEcCe
Q 034150 8 VNEACCPPLE-SCAFCLV---------LFSS----T--NNKFLKSLHVLILEGDGSKIQAALAEW-TGQRTVPNVFIGGK 70 (102)
Q Consensus 8 ~~~vvvy~~~-~Cp~C~~---------~L~~----~--~i~~~~~~i~id~~~~~~~~~~~l~~~-~g~~~vP~ifi~g~ 70 (102)
..++++|+.+ -|..|.. ||+. + +.+|...+++|...+......+...++ ....-.|.|.++|+
T Consensus 4 ~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvede 83 (106)
T COG4837 4 EAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDE 83 (106)
T ss_pred eeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcce
Confidence 3468889886 4888876 5542 2 455554477775544434434444443 34567899999999
Q ss_pred EEe-chHHHHHHH
Q 034150 71 HIG-GCDTVVEKH 82 (102)
Q Consensus 71 ~ig-g~~~l~~~~ 82 (102)
.|+ |.-.|+..+
T Consensus 84 iVaeGnprlKdiy 96 (106)
T COG4837 84 IVAEGNPRLKDIY 96 (106)
T ss_pred EeecCCchHHHHH
Confidence 997 666665544
No 178
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.09 E-value=0.0053 Score=38.28 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=11.7
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
++.|..+|||.|+.
T Consensus 21 ll~F~atwC~~C~~ 34 (132)
T cd02964 21 GLYFSASWCPPCRA 34 (132)
T ss_pred EEEEECCCCchHHH
Confidence 34478899999999
No 179
>PTZ00062 glutaredoxin; Provisional
Probab=97.07 E-value=0.0016 Score=44.24 Aligned_cols=50 Identities=6% Similarity=-0.072 Sum_probs=33.4
Q ss_pred ceEEecCCCCHHHHH---HHhhCC---CCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEEec
Q 034150 10 EACCPPLESCAFCLV---LFSSTN---NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHIGG 74 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~---i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~igg 74 (102)
.|..|+.+|||.|+. +|.+.- -.+. ++.|+.+ .+...+|++ |-+|+.++.
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~--F~~V~~d-------------~~V~~vPtfv~~~~g~~i~r 77 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDFPSLE--FYVVNLA-------------DANNEYGVFEFYQNSQLINS 77 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHCCCcE--EEEEccc-------------cCcccceEEEEEECCEEEee
Confidence 355567999999999 443332 2355 6677743 778899966 468876653
No 180
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.07 E-value=0.0006 Score=46.60 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=39.5
Q ss_pred CCceEEecCCCCHHHHH-------HHhhCCCCCccceEEeccCCC----hHHHHHHHHHHhCCCCcceEEE
Q 034150 8 VNEACCPPLESCAFCLV-------LFSSTNNKFLKSLHVLILEGD----GSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~~----~~~~~~~l~~~~g~~~vP~ifi 67 (102)
..-+++|..++||+|+. +-+++|+... .|.+|.... ....-..+.+..|...+|.+|+
T Consensus 121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~--~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 121 KYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVI--PVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred CeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEE--EEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 34588899999999999 4456788877 778875311 0001233555678889999976
No 181
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=96.99 E-value=0.0062 Score=37.50 Aligned_cols=14 Identities=21% Similarity=0.047 Sum_probs=12.3
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
|+.|..+|||.|+.
T Consensus 29 vv~F~a~~C~~C~~ 42 (127)
T cd03010 29 LLNVWASWCAPCRE 42 (127)
T ss_pred EEEEEcCcCHHHHH
Confidence 56688999999999
No 182
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.98 E-value=0.003 Score=40.66 Aligned_cols=55 Identities=5% Similarity=-0.011 Sum_probs=31.6
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCc--cceEEeccCCChHHHHHHHHHHhCCCCc-ceE--EEcCe
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFL--KSLHVLILEGDGSKIQAALAEWTGQRTV-PNV--FIGGK 70 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~--~~~i~id~~~~~~~~~~~l~~~~g~~~v-P~i--fi~g~ 70 (102)
|+-|+.+||+.|+. +|++..-++. ..++.+|.+.. .++...++.++. |.+ |-+|+
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~-----~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV-----PDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC-----HHHHHHcCccCCCcEEEEEECCe
Confidence 34499999999999 5554432221 11455555532 345556666644 554 34665
No 183
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.97 E-value=0.0063 Score=35.52 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=25.0
Q ss_pred eEEecCCCCHHHHH-------HHhhCC--CCCccceEEeccCCChHHHHHHHHH
Q 034150 11 ACCPPLESCAFCLV-------LFSSTN--NKFLKSLHVLILEGDGSKIQAALAE 55 (102)
Q Consensus 11 vvvy~~~~Cp~C~~-------~L~~~~--i~~~~~~i~id~~~~~~~~~~~l~~ 55 (102)
++.|..+||+.|+. +-++++ -.++ ++-|..+.+..+.++.+++
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~--~v~Vs~d~~~~~~~~~~~~ 56 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVE--FVFVSLDEDEEEWKKFLKK 56 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEE--EEEEE-SSSHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEE--EEEEEeCCCHHHHHHHHHh
Confidence 56689999999999 333344 5566 5555555444454444443
No 184
>PRK10542 glutathionine S-transferase; Provisional
Probab=96.91 E-value=0.0036 Score=41.37 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=48.5
Q ss_pred EEecC-CCCHHHHH-HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE-cCeEEechHHHHHHHH
Q 034150 12 CCPPL-ESCAFCLV-LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 12 vvy~~-~~Cp~C~~-~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~l~~~~~ 83 (102)
.+|+. ..|+.+.. +|...|++|+ .+.++.........+++.+++....+|++.+ ||..|-.+..+.++..
T Consensus 2 ~l~~~~~s~~~~~~~~L~~~gi~~e--~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~ 74 (201)
T PRK10542 2 KLFYKPGACSLASHITLRESGLDFT--LVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLA 74 (201)
T ss_pred ceeecccHHHHHHHHHHHHcCCCce--EEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHH
Confidence 45544 34555444 8999999999 7777654211111356777888999999976 7778888888887764
No 185
>PTZ00102 disulphide isomerase; Provisional
Probab=96.90 E-value=0.0034 Score=46.80 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=33.9
Q ss_pred eEEecCCCCHHHHH---H-------HhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcCe
Q 034150 11 ACCPPLESCAFCLV---L-------FSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGGK 70 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~-------L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g~ 70 (102)
++.|..+||++|++ . +...+-++. +..+|...+ ..+.+..+..++|+++ -+|.
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~--~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIV--LASVDATEE-----MELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEE--EEEEECCCC-----HHHHHhcCCCcccEEEEEECCc
Confidence 66789999999998 1 222233344 556665432 3455567888999874 4554
No 186
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.89 E-value=0.0056 Score=40.76 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=12.2
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
|+.|..+|||.|++
T Consensus 78 vl~F~atwCp~C~~ 91 (189)
T TIGR02661 78 LLMFTAPSCPVCDK 91 (189)
T ss_pred EEEEECCCChhHHH
Confidence 55689999999999
No 187
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0016 Score=45.56 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=38.8
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCc-cceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEE
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFL-KSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~-~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~i 72 (102)
+|=||.+||..|++ +++.+.-+|- ..+..+|.+. -+....-.|....|++ |.||..|
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~-----c~~taa~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDE-----CRGTAATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHH-----hhchhhhcCcccCceEEEEecCeEe
Confidence 45599999999999 7776655553 2266777642 1223345688899976 7899765
No 188
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.84 E-value=0.0027 Score=48.00 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=31.7
Q ss_pred eEEecCCCCHHHHH---HHh----hC---CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCe
Q 034150 11 ACCPPLESCAFCLV---LFS----ST---NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGK 70 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~----~~---~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~ 70 (102)
++.|..+||++|+. .|+ ++ ++.+- .+++|.+. .+...+..+..++|++ |.+|.
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~--kVdvD~~~-----~~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVA--KFRADGDQ-----KEFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEE--EEECCCCc-----cHHHHHHcCCCccceEEEEECCC
Confidence 56699999999998 332 22 23333 44555431 1223345688899987 44653
No 189
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.83 E-value=0.014 Score=37.62 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=33.5
Q ss_pred eEEecCCCCHHHHH-------HHhhCC-CCCccceEEeccCCChHHHH-----------------HHHHHHhCCCCcceE
Q 034150 11 ACCPPLESCAFCLV-------LFSSTN-NKFLKSLHVLILEGDGSKIQ-----------------AALAEWTGQRTVPNV 65 (102)
Q Consensus 11 vvvy~~~~Cp~C~~-------~L~~~~-i~~~~~~i~id~~~~~~~~~-----------------~~l~~~~g~~~vP~i 65 (102)
++.|..+|||+|+. +.++.+ -.+. ++-++.+.+..+.+ ..+.+..|...+|.+
T Consensus 65 ~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~--vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 142 (173)
T PRK03147 65 FLNFWGTWCKPCEKEMPYMNELYPKYKEKGVE--IIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTT 142 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHHhhcCCeE--EEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeE
Confidence 56688899999998 222222 1234 44555443322222 244455677888976
Q ss_pred E-E--cCeEE
Q 034150 66 F-I--GGKHI 72 (102)
Q Consensus 66 f-i--~g~~i 72 (102)
| + +|+.+
T Consensus 143 ~lid~~g~i~ 152 (173)
T PRK03147 143 FLIDKDGKVV 152 (173)
T ss_pred EEECCCCcEE
Confidence 4 4 46644
No 190
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.79 E-value=0.0072 Score=42.19 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=14.0
Q ss_pred ceEEecCCCCHHHHH
Q 034150 10 EACCPPLESCAFCLV 24 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~ 24 (102)
.|++|+.+.||||++
T Consensus 120 ~I~vFtDp~CpyC~k 134 (251)
T PRK11657 120 IVYVFADPNCPYCKQ 134 (251)
T ss_pred EEEEEECCCChhHHH
Confidence 588999999999999
No 191
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=96.79 E-value=0.01 Score=33.70 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=41.1
Q ss_pred CCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 17 ESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 17 ~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
+.+|+|-+ +|+-.|++|+ .+.... .. .+....+|.+..+|+.|+|++.+.++.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~--v~~~~n-~~----------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLK--VVPSNN-PW----------RSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEE--EEecCC-CC----------CCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 45799999 8888899998 542221 11 23456799999999999999998887654
No 192
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.75 E-value=0.0046 Score=45.59 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=35.0
Q ss_pred eEEecCCCCHHHHH---H-------HhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeE
Q 034150 11 ACCPPLESCAFCLV---L-------FSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKH 71 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~-------L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~ 71 (102)
++.|..+||++|++ . +...+-.+. +..+|.+.+ ..+.+..+..++|++ |.+|+.
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~--~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIK--LAKVDATEE-----KDLAQKYGVSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceE--EEEEECCCc-----HHHHHhCCCccccEEEEEeCCcc
Confidence 56689999999998 2 223332344 556665532 345566788999987 446654
No 193
>PLN02309 5'-adenylylsulfate reductase
Probab=96.69 E-value=0.0034 Score=47.43 Aligned_cols=53 Identities=11% Similarity=0.200 Sum_probs=30.8
Q ss_pred ceEEecCCCCHHHHH---HHh----hC-CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 10 EACCPPLESCAFCLV---LFS----ST-NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~----~~-~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
-++.|..+||++|+. .+. .+ +..+. +..+|.+.+. .+...+..+..++|++++
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~--f~kVD~d~~~---~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVK--VAKFRADGDQ---KEFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeE--EEEEECCCcc---hHHHHhhCCCceeeEEEE
Confidence 367799999999998 332 22 22234 4455544111 222233568889998843
No 194
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.68 E-value=0.0067 Score=46.96 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=35.3
Q ss_pred eEEecCCCCHHHHH----HHh------hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE---cCeE
Q 034150 11 ACCPPLESCAFCLV----LFS------STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI---GGKH 71 (102)
Q Consensus 11 vvvy~~~~Cp~C~~----~L~------~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi---~g~~ 71 (102)
++.|+.+||++|+. .+. +.+ ++. ++.+|.+.+.++ ..++.+..+...+|++++ +|+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~--~v~vDvt~~~~~-~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTV--LLQADVTANNAE-DVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCE--EEEEECCCCChh-hHHHHHHcCCCCCCEEEEECCCCCC
Confidence 44589999999998 232 222 355 666666543233 345556688999998743 4554
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.67 E-value=0.0088 Score=34.24 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=12.7
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
|.+|....||+|..
T Consensus 1 i~~f~d~~Cp~C~~ 14 (98)
T cd02972 1 IVEFFDPLCPYCYL 14 (98)
T ss_pred CeEEECCCCHhHHh
Confidence 57899999999999
No 196
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.53 E-value=0.0081 Score=42.35 Aligned_cols=58 Identities=17% Similarity=0.339 Sum_probs=44.3
Q ss_pred ceEEecCC-------CCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHH
Q 034150 10 EACCPPLE-------SCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVV 79 (102)
Q Consensus 10 ~vvvy~~~-------~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~ 79 (102)
-|-+|.-+ -.|||-+ +|...+|+|+ .++.. ++.++...++|.|-.||++|.+.+-+.
T Consensus 45 ~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE----~~~~~---------~~~rSr~G~lPFIELNGe~iaDS~~I~ 111 (281)
T KOG4244|consen 45 TVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYE----IVDCS---------LKRRSRNGTLPFIELNGEHIADSDLIE 111 (281)
T ss_pred eEEEEeccccCCCCCCChHHHHHHHHHHHhCCCce----ecccc---------ceeeccCCCcceEEeCCeeccccHHHH
Confidence 45666543 3579999 9999999999 55543 434567789999999999999988765
Q ss_pred H
Q 034150 80 E 80 (102)
Q Consensus 80 ~ 80 (102)
.
T Consensus 112 ~ 112 (281)
T KOG4244|consen 112 D 112 (281)
T ss_pred H
Confidence 4
No 197
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.51 E-value=0.0064 Score=37.08 Aligned_cols=40 Identities=10% Similarity=0.160 Sum_probs=25.9
Q ss_pred ecCCCCHHHHH---HHhhCCCCCccceEEeccCC-ChHHHHHHHHH
Q 034150 14 PPLESCAFCLV---LFSSTNNKFLKSLHVLILEG-DGSKIQAALAE 55 (102)
Q Consensus 14 y~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~-~~~~~~~~l~~ 55 (102)
|+.+.|.-|++ +|+++|++|+ ++++...+ +..++.+.+..
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~--~~d~~k~p~s~~el~~~l~~ 44 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYE--FIDYKKEPLSREELRELLSK 44 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EE--EEETTTS---HHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeE--eehhhhCCCCHHHHHHHHHH
Confidence 78899999999 9999999999 88887652 33444444443
No 198
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.44 E-value=0.0034 Score=39.83 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=11.9
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
++.|+++|||+|++
T Consensus 27 mv~f~sdwC~~Ck~ 40 (130)
T cd02960 27 MVIHHLEDCPHSQA 40 (130)
T ss_pred EEEEeCCcCHhHHH
Confidence 45588899999999
No 199
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.40 E-value=0.0046 Score=42.01 Aligned_cols=67 Identities=22% Similarity=0.165 Sum_probs=31.0
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccce--EEec-----cCCC------hHHHHHHHHHHhCC--CCcceEEEcCe-E
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSL--HVLI-----LEGD------GSKIQAALAEWTGQ--RTVPNVFIGGK-H 71 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~--i~id-----~~~~------~~~~~~~l~~~~g~--~~vP~ifi~g~-~ 71 (102)
|.+||..+|+.|.- +|.++.-...... +-|| ...| -.+-+....+..|. ...|+++|||+ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 67999999999998 5543221111001 1111 1111 12233344444443 45699999996 6
Q ss_pred EechHH
Q 034150 72 IGGCDT 77 (102)
Q Consensus 72 igg~~~ 77 (102)
.+|++.
T Consensus 82 ~~g~~~ 87 (202)
T PF06764_consen 82 RVGSDR 87 (202)
T ss_dssp EETT-H
T ss_pred eeccCH
Confidence 777763
No 200
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.39 E-value=0.0075 Score=36.75 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=12.7
Q ss_pred ceEEecCCCCHHHHH
Q 034150 10 EACCPPLESCAFCLV 24 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~ 24 (102)
-++.|..+|||+|+.
T Consensus 23 ~vl~F~~~~C~~C~~ 37 (123)
T cd03011 23 VLVYFWATWCPVCRF 37 (123)
T ss_pred EEEEEECCcChhhhh
Confidence 366688999999999
No 201
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=96.36 E-value=0.031 Score=32.21 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=39.6
Q ss_pred HHHHHHHhhCCCCCccceEEeccCCChHH-HHHHHHHH----hCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 20 AFCLVLFSSTNNKFLKSLHVLILEGDGSK-IQAALAEW----TGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 20 p~C~~~L~~~~i~~~~~~i~id~~~~~~~-~~~~l~~~----~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
.-|+-+|...|++|+ .+.++....+.. -.+..... ....++|++..||..+.-+..+..+..
T Consensus 13 ~~~~~~l~~~gi~~e--~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 13 QPIRLLLEYTGEKYE--EKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred HHHHHHHHHcCCCcE--EEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHh
Confidence 333338999999999 777775431110 01122111 156799999999988888877777664
No 202
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.35 E-value=0.0041 Score=43.66 Aligned_cols=58 Identities=7% Similarity=-0.053 Sum_probs=39.1
Q ss_pred CCceEEecCCCCHHHHH-------HHhhCCCCCccceEEeccCCC----hHHHHHHHHHHhCCCCcceEEE
Q 034150 8 VNEACCPPLESCAFCLV-------LFSSTNNKFLKSLHVLILEGD----GSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~~----~~~~~~~l~~~~g~~~vP~ifi 67 (102)
...+++|..+.||+|++ +-+++|+... .|.+|.... ....-..+.+..|...+|.+|+
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~--~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVI--PISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEE--EEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 34688899999999999 3456788877 777776421 0111123444567889999875
No 203
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.34 E-value=0.029 Score=32.75 Aligned_cols=15 Identities=13% Similarity=-0.011 Sum_probs=12.6
Q ss_pred ceEEecCCCCHHHHH
Q 034150 10 EACCPPLESCAFCLV 24 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~ 24 (102)
-++.|..+|||+|++
T Consensus 22 ~ll~f~~~~C~~C~~ 36 (116)
T cd02966 22 VLVNFWASWCPPCRA 36 (116)
T ss_pred EEEEeecccChhHHH
Confidence 366688899999998
No 204
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.30 E-value=0.0042 Score=43.44 Aligned_cols=57 Identities=5% Similarity=-0.132 Sum_probs=38.3
Q ss_pred CCceEEecCCCCHHHHH-------HHhhCCCCCccceEEeccCCChHHH-----HHHHHHHhCCCCcceEEE
Q 034150 8 VNEACCPPLESCAFCLV-------LFSSTNNKFLKSLHVLILEGDGSKI-----QAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~~~~~~-----~~~l~~~~g~~~vP~ifi 67 (102)
...+++|..+.||||++ +-+.+|+... -|.+|.... +.+ -....+..|...+|.+|+
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~--~VS~DG~~~-p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVI--PVSVDGVIN-PLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHhCCeEE--EEecCCCCC-CCCCCCccChhHHHhcCCcccceEEE
Confidence 45688999999999999 4456788777 677775321 110 112234567789999976
No 205
>PTZ00057 glutathione s-transferase; Provisional
Probab=96.28 E-value=0.029 Score=37.52 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=46.2
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHH--HHHHH--HHhCCCCcceEEEcCeEEechHHHHHHH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKI--QAALA--EWTGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~--~~~l~--~~~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
++++|..+..+.|.+ +|+..|++|+ .+.++... .+. .+.+. ..+....+|.+.+||..+..+..+..+.
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye--~~~~~~~~--~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYT--DKRFGENG--DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeE--EEeccccc--hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 477887644444444 8999999999 66554211 111 11112 3567889999999998888888777765
Q ss_pred H
Q 034150 83 Q 83 (102)
Q Consensus 83 ~ 83 (102)
.
T Consensus 80 a 80 (205)
T PTZ00057 80 S 80 (205)
T ss_pred H
Confidence 4
No 206
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=96.26 E-value=0.018 Score=38.11 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=12.0
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
++.|..+|||+|++
T Consensus 72 vv~FwatwC~~C~~ 85 (185)
T PRK15412 72 LLNVWATWCPTCRA 85 (185)
T ss_pred EEEEECCCCHHHHH
Confidence 45588999999999
No 207
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=96.22 E-value=0.013 Score=36.88 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=32.0
Q ss_pred HHhhCCCCCccceEEeccCCCh----HHHHHHHHHHhCCCCcceEEEcCeEE--echHHHH
Q 034150 25 LFSSTNNKFLKSLHVLILEGDG----SKIQAALAEWTGQRTVPNVFIGGKHI--GGCDTVV 79 (102)
Q Consensus 25 ~L~~~~i~~~~~~i~id~~~~~----~~~~~~l~~~~g~~~vP~ifi~g~~i--gg~~~l~ 79 (102)
+|++.|++.. .+++..++.. +.+.+.|. ..|...+|.+++||+.+ |.+-+..
T Consensus 35 ~Lk~~gv~v~--RyNL~~~P~aF~~n~~V~~~L~-~~G~e~LPitlVdGeiv~~G~YPt~e 92 (123)
T PF06953_consen 35 WLKEQGVEVE--RYNLAQNPQAFVENPEVNQLLQ-TEGAEALPITLVDGEIVKTGRYPTNE 92 (123)
T ss_dssp HHHHTT-EEE--EEETTT-TTHHHHSHHHHHHHH-HH-GGG-SEEEETTEEEEESS---HH
T ss_pred HHHhCCceEE--EEccccCHHHHHhCHHHHHHHH-HcCcccCCEEEECCEEEEecCCCCHH
Confidence 8889999999 8899887542 22333333 46889999999999865 6665433
No 208
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.21 E-value=0.052 Score=34.90 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=50.7
Q ss_pred CCceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhC----CCCcceEEEcCeEEech---HH
Q 034150 8 VNEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTG----QRTVPNVFIGGKHIGGC---DT 77 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g----~~~vP~ifi~g~~igg~---~~ 77 (102)
..++++|-.|.|.=|+. .|+..|++.. .++.+. ...+++..| ..+.=+..|||.+|=|- ++
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk--~~~~~d-------~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~a 95 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVK--VVETDD-------FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEA 95 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEE--EeecCc-------HHHHHHhcCCChhhccccEEEEcCEEEeccCCHHH
Confidence 34799999999999999 7777777666 444432 556776655 35777999999999775 55
Q ss_pred HHHHHHCCC
Q 034150 78 VVEKHQGGK 86 (102)
Q Consensus 78 l~~~~~~g~ 86 (102)
+.++.+++.
T Consensus 96 I~~ll~~~p 104 (149)
T COG3019 96 IARLLAEKP 104 (149)
T ss_pred HHHHHhCCC
Confidence 666665554
No 209
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.21 E-value=0.041 Score=33.88 Aligned_cols=14 Identities=21% Similarity=0.062 Sum_probs=11.7
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
|+.|..+|||+|.+
T Consensus 27 vl~F~a~~C~~C~~ 40 (126)
T cd03012 27 LLDFWTYCCINCLH 40 (126)
T ss_pred EEEEECCCCccHHH
Confidence 45578899999998
No 210
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.022 Score=39.04 Aligned_cols=72 Identities=10% Similarity=-0.024 Sum_probs=57.0
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
++++|+...-|.|++ .+...|++|+ .+.++... +.+...++.+++...+||++..+|-.+-.+..+..+..+
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e--~~~v~~~~-ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ 76 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVE--LKPVDLVK-GEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAE 76 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCcee--EEEeeccc-cccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHH
Confidence 467999999999999 7788999999 66666542 355566777889999999999998888888777766544
No 211
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.04 E-value=0.025 Score=33.30 Aligned_cols=51 Identities=16% Similarity=0.076 Sum_probs=31.9
Q ss_pred ceEEecCCCCHHHHH---HHh----hCCCCCccceEEeccCCChHHHHHHHHHHhCCC--CcceEEE
Q 034150 10 EACCPPLESCAFCLV---LFS----STNNKFLKSLHVLILEGDGSKIQAALAEWTGQR--TVPNVFI 67 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~----~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~--~vP~ifi 67 (102)
-+++|..+||+.|.. .|+ ++.-++. ++-+|.+. ...+.+..|.. ++|++.+
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~--f~~vd~~~-----~~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLL--FVVVDADD-----FGRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEE--EEEEchHh-----hHHHHHHcCCChhhCCEEEE
Confidence 466788999999998 333 3332344 55666542 22355556776 9998854
No 212
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.02 E-value=0.039 Score=33.09 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=11.9
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
|+.|..+|||.|+.
T Consensus 25 vl~F~~~wC~~C~~ 38 (114)
T cd02967 25 LLFFLSPTCPVCKK 38 (114)
T ss_pred EEEEECCCCcchHh
Confidence 45578899999998
No 213
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.02 E-value=0.065 Score=33.34 Aligned_cols=61 Identities=18% Similarity=0.093 Sum_probs=36.5
Q ss_pred ccCCc--eEEecC--CCCH---HHHHH---Hhh-C-CCCCccceEEeccCCChHHHHHHHHHHhCCC--CcceE--EEcC
Q 034150 6 VFVNE--ACCPPL--ESCA---FCLVL---FSS-T-NNKFLKSLHVLILEGDGSKIQAALAEWTGQR--TVPNV--FIGG 69 (102)
Q Consensus 6 i~~~~--vvvy~~--~~Cp---~C~~~---L~~-~-~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~--~vP~i--fi~g 69 (102)
|..++ +|.|.. +||. +|+++ +.. - .|.+- .||.+..+......|.+.+|.. .+|+| |.+|
T Consensus 15 v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~la----kVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g 90 (116)
T cd03007 15 IPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVA----EVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGG 90 (116)
T ss_pred HhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEE----EEecccccchhhHHHHHHhCCCcCCCCEEEEEeCC
Confidence 44444 466888 9999 99982 222 1 24444 4444321122235688889988 99987 5677
Q ss_pred e
Q 034150 70 K 70 (102)
Q Consensus 70 ~ 70 (102)
.
T Consensus 91 ~ 91 (116)
T cd03007 91 D 91 (116)
T ss_pred C
Confidence 3
No 214
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.017 Score=44.06 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=41.2
Q ss_pred cccCCce--EEecCCCCHHHHH----------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCe
Q 034150 5 AVFVNEA--CCPPLESCAFCLV----------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGK 70 (102)
Q Consensus 5 ~i~~~~v--vvy~~~~Cp~C~~----------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~ 70 (102)
.|..|.. +-|..|||.+|++ .|.+.+-+.. .-.||-..+ ..+...++.+.+|++ |.||+
T Consensus 38 ~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~--LakVDat~~-----~~~~~~y~v~gyPTlkiFrnG~ 110 (493)
T KOG0190|consen 38 TINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVK--LAKVDATEE-----SDLASKYEVRGYPTLKIFRNGR 110 (493)
T ss_pred HhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCce--eEEeecchh-----hhhHhhhcCCCCCeEEEEecCC
Confidence 3445553 5588899999999 5556644555 557776432 556667888999987 66887
Q ss_pred E
Q 034150 71 H 71 (102)
Q Consensus 71 ~ 71 (102)
.
T Consensus 111 ~ 111 (493)
T KOG0190|consen 111 S 111 (493)
T ss_pred c
Confidence 3
No 215
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=96.00 E-value=0.05 Score=35.53 Aligned_cols=14 Identities=14% Similarity=0.045 Sum_probs=11.9
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
++.|..+|||.|++
T Consensus 67 ll~F~a~wC~~C~~ 80 (173)
T TIGR00385 67 LLNVWASWCPPCRA 80 (173)
T ss_pred EEEEECCcCHHHHH
Confidence 45578899999999
No 216
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=95.85 E-value=0.021 Score=34.70 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=33.9
Q ss_pred eEEecCCCCHHHHH----HHhhCCC------CCccceEEeccCCChHHHHHHHHHHhCCCCcceE-EE---cCeEE
Q 034150 11 ACCPPLESCAFCLV----LFSSTNN------KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV-FI---GGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~----~L~~~~i------~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i-fi---~g~~i 72 (102)
++.++.+||++|+. .|.+..+ .|. .+.+|... ++ ...+....+...+|.+ |+ +|+.+
T Consensus 21 lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v--~~~~d~~~--~e-~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 21 LVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFI--FWQCDIDS--SE-GQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred EEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEE--EEEecCCC--cc-HHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 34468899999999 3332222 344 55555542 22 2346666788899987 44 45443
No 217
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=95.77 E-value=0.17 Score=28.97 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=40.4
Q ss_pred eEEecCCCCHHHHH-HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 11 ACCPPLESCAFCLV-LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 11 vvvy~~~~Cp~C~~-~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
..++....|..-.. +|+..|++|+ .+++.... ..+....+|.+.+||+.|+++.-+..+..+
T Consensus 11 ~~~~~~~~~~~kv~~~L~elglpye--~~~~~~~~----------~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~ 73 (74)
T cd03079 11 QILLPDNASCLAVQTFLKMCNLPFN--VRCRANAE----------FMSPSGKVPFIRVGNQIVSEFGPIVQFVEA 73 (74)
T ss_pred eeecCCCCCHHHHHHHHHHcCCCcE--EEecCCcc----------ccCCCCcccEEEECCEEEeCHHHHHHHHhc
Confidence 44443333333333 9999999999 66432110 022347899999999999999888776643
No 218
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=95.55 E-value=0.096 Score=32.82 Aligned_cols=14 Identities=14% Similarity=0.021 Sum_probs=11.1
Q ss_pred eEEecCC-CCHHHHH
Q 034150 11 ACCPPLE-SCAFCLV 24 (102)
Q Consensus 11 vvvy~~~-~Cp~C~~ 24 (102)
|+.|..+ |||+|..
T Consensus 32 vv~f~~~~~Cp~C~~ 46 (146)
T PF08534_consen 32 VVNFWASAWCPPCRK 46 (146)
T ss_dssp EEEEESTTTSHHHHH
T ss_pred EEEEEccCCCCcchh
Confidence 4556667 9999998
No 219
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.026 Score=38.74 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=44.4
Q ss_pred ceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEe----chHHHHHHH
Q 034150 10 EACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIG----GCDTVVEKH 82 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~ig----g~~~l~~~~ 82 (102)
.|.||+-.+|..|-. .|+++|.--...+++-.... ..++ ..+.-++|.||+||+.+. .++++..+.
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~-----f~~~--~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~ 84 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPP-----FLAF--EKGVISVPSVFIDGELVYADPVDPEEIESIL 84 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCCh-----HHHh--hcceeecceEEEcCeEEEcCCCCHHHHHHHH
Confidence 688999999999999 88898875441144433321 2222 347789999999999764 345554444
No 220
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.068 Score=35.17 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=34.9
Q ss_pred eEEecCCCCHHHHH----H-----HhhCCC-CCccceEEeccCCC-----------hHHHHHHHHHHhCCCCcceEE-Ec
Q 034150 11 ACCPPLESCAFCLV----L-----FSSTNN-KFLKSLHVLILEGD-----------GSKIQAALAEWTGQRTVPNVF-IG 68 (102)
Q Consensus 11 vvvy~~~~Cp~C~~----~-----L~~~~i-~~~~~~i~id~~~~-----------~~~~~~~l~~~~g~~~vP~if-i~ 68 (102)
+.||..++|+||.+ + |++.=. .|. .+.++.... ...-.++|.+..+.++.|+++ .|
T Consensus 46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~--~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfd 123 (182)
T COG2143 46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFS--AYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFD 123 (182)
T ss_pred EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeE--EEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEc
Confidence 78899999999998 2 222211 233 333332110 011245777788999999874 44
Q ss_pred C--eEEe
Q 034150 69 G--KHIG 73 (102)
Q Consensus 69 g--~~ig 73 (102)
+ +.|+
T Consensus 124 k~Gk~Il 130 (182)
T COG2143 124 KTGKTIL 130 (182)
T ss_pred CCCCEEE
Confidence 4 4444
No 221
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.14 E-value=0.023 Score=41.91 Aligned_cols=48 Identities=6% Similarity=0.144 Sum_probs=28.3
Q ss_pred eEEecCCCCHHHHH---HH----hhCCC---CCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 11 ACCPPLESCAFCLV---LF----SSTNN---KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L----~~~~i---~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
++.|..+||++|+. .+ +...- .+. +..+|.+.+ .+.. .+...+|++++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~--~~~id~~~n------~~~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVV--IAKMDATAN------DVPP-FEVEGFPTIKF 425 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEE--EEEEECCCC------ccCC-CCccccCEEEE
Confidence 56689999999998 22 22221 234 455555422 1222 56778998754
No 222
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.86 E-value=0.037 Score=34.60 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=23.3
Q ss_pred cCCCCHHHHH-------HHhhCCCCCccceEEeccCCChHHH---HHHHHH--HhCCCCcceEEE
Q 034150 15 PLESCAFCLV-------LFSSTNNKFLKSLHVLILEGDGSKI---QAALAE--WTGQRTVPNVFI 67 (102)
Q Consensus 15 ~~~~Cp~C~~-------~L~~~~i~~~~~~i~id~~~~~~~~---~~~l~~--~~g~~~vP~ifi 67 (102)
+.+|||+|.+ .|....-... ++.+...+. +.- ...++. ......+|+++.
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~--lv~v~VG~r-~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENAR--LVYVEVGDR-PEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEE--EEEEE---H-HHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCce--EEEEEcCCH-HHhCCCCCCceEcceeeeeecceEEE
Confidence 3479999999 5554322344 444443210 110 123443 356679999974
No 223
>PTZ00102 disulphide isomerase; Provisional
Probab=94.85 E-value=0.04 Score=41.10 Aligned_cols=50 Identities=10% Similarity=0.146 Sum_probs=28.6
Q ss_pred eEEecCCCCHHHHH---HHhhCC-----C-CCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 11 ACCPPLESCAFCLV---LFSSTN-----N-KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~-----i-~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
++.|..+||++|+. .+++.. . ... +..+|.+.+ +......+.+.+|++++
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~--~~~id~~~~-----~~~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSII--VAKMNGTAN-----ETPLEEFSWSAFPTILF 437 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEE--EEEEECCCC-----ccchhcCCCcccCeEEE
Confidence 56688999999998 333221 1 123 444554422 12333456788998843
No 224
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=94.82 E-value=0.12 Score=31.16 Aligned_cols=14 Identities=21% Similarity=0.289 Sum_probs=9.8
Q ss_pred eEEecCC-CCHHHHH
Q 034150 11 ACCPPLE-SCAFCLV 24 (102)
Q Consensus 11 vvvy~~~-~Cp~C~~ 24 (102)
|+.|..+ |||+|..
T Consensus 29 vl~f~~~~~c~~c~~ 43 (124)
T PF00578_consen 29 VLFFWPTAWCPFCQA 43 (124)
T ss_dssp EEEEESTTTSHHHHH
T ss_pred EEEEeCccCcccccc
Confidence 3334445 9999998
No 225
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=94.77 E-value=0.18 Score=32.67 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=11.6
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
|+.|..+|||.|.+
T Consensus 29 ll~f~~t~Cp~c~~ 42 (171)
T cd02969 29 VVMFICNHCPYVKA 42 (171)
T ss_pred EEEEECCCCccHHH
Confidence 55577899999987
No 226
>smart00594 UAS UAS domain.
Probab=94.75 E-value=0.13 Score=31.84 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=31.9
Q ss_pred eEEecCCCCHHHHH----HHhhCCC------CCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 11 ACCPPLESCAFCLV----LFSSTNN------KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 11 vvvy~~~~Cp~C~~----~L~~~~i------~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
++.+..+||++|+. +|.+..| .|- .+.+|... ++ ...+....+..++|.+.+
T Consensus 31 lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv--~~~~dv~~--~e-g~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 31 WLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFI--FWQVDVDT--SE-GQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred EEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEE--EEEecCCC--hh-HHHHHHhcCcCCCCEEEE
Confidence 55578899999999 3333222 344 44555542 22 235666678889998844
No 227
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=94.71 E-value=0.014 Score=41.17 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=47.5
Q ss_pred eEEecCCCCHHHHH------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEEechHHHHHHH
Q 034150 11 ACCPPLESCAFCLV------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 11 vvvy~~~~Cp~C~~------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~igg~~~l~~~~ 82 (102)
|+-+..+.++-|.. .|........ |+.|....- .+........+|+| |.+|..++.+-.+.+..
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vK--FvkI~a~~~------~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~ 221 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVK--FVKIRASKC------PASENFPDKNLPTLLVYKNGDLIGNFVGLTDLL 221 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSE--EEEEEECGC------CTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceE--EEEEehhcc------CcccCCcccCCCEEEEEECCEEEEeEEehHHhc
Confidence 44477789999999 3444444444 666665311 02233556789988 45998777654433322
Q ss_pred ----HCCCcHHHHHhcCchhhh
Q 034150 83 ----QGGKLVPLLRDAGALALA 100 (102)
Q Consensus 83 ----~~g~L~~~l~~~g~~~~~ 100 (102)
...+|+.+|.+.|+|...
T Consensus 222 g~df~~~dlE~~L~~~G~l~~k 243 (265)
T PF02114_consen 222 GDDFFTEDLEAFLIEYGVLPEK 243 (265)
T ss_dssp -TT--HHHHHHHHHTTTSSS--
T ss_pred CCCCCHHHHHHHHHHcCCCCCc
Confidence 233799999999998653
No 228
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=94.52 E-value=0.23 Score=28.22 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=38.9
Q ss_pred CHHHHH---HHhhCCCC---CccceEEeccCCChHHHHHHHHHHhCCCCcceEEE-cCeEEechHHHHHHH
Q 034150 19 CAFCLV---LFSSTNNK---FLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKH 82 (102)
Q Consensus 19 Cp~C~~---~L~~~~i~---~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~l~~~~ 82 (102)
-|.|-+ +|+-.+.+ ++ ++..+.. + ++....+|.+.. +++.+.|+.++.++.
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~--vv~s~n~-~----------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFK--VVPSNNP-W----------LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEE--EEEcCCC-C----------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 678888 77888888 66 5554432 1 355679999999 999999999998865
No 229
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.35 E-value=0.32 Score=37.54 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=12.0
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
++-|..+|||.|++
T Consensus 60 vV~FWATWCppCk~ 73 (521)
T PRK14018 60 LIKFWASWCPLCLS 73 (521)
T ss_pred EEEEEcCCCHHHHH
Confidence 44588999999999
No 230
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=94.27 E-value=0.19 Score=33.66 Aligned_cols=34 Identities=0% Similarity=-0.252 Sum_probs=23.7
Q ss_pred ceEEecCCCCHHHHH------HHhhCCCCCc----cceEEeccC
Q 034150 10 EACCPPLESCAFCLV------LFSSTNNKFL----KSLHVLILE 43 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~------~L~~~~i~~~----~~~i~id~~ 43 (102)
.++-|..+||+.|+. .|.+.|++++ .+.|+.|..
T Consensus 62 ~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 62 RVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred EEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 355589999999999 5566778771 116776653
No 231
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.18 E-value=0.14 Score=33.84 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=11.0
Q ss_pred EEecCCCCHHHHH
Q 034150 12 CCPPLESCAFCLV 24 (102)
Q Consensus 12 vvy~~~~Cp~C~~ 24 (102)
+++..+|||+|..
T Consensus 46 v~n~atwCp~C~~ 58 (183)
T PTZ00256 46 VVNVACKCGLTSD 58 (183)
T ss_pred EEEECCCCCchHH
Confidence 3468999999998
No 232
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=94.12 E-value=0.072 Score=38.69 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=32.7
Q ss_pred EEecCCCCHHHHH---HHhhCCCCCccc-----eEEeccCCChHHHHHHHHHHhCCCCcceE-EEcCeE
Q 034150 12 CCPPLESCAFCLV---LFSSTNNKFLKS-----LHVLILEGDGSKIQAALAEWTGQRTVPNV-FIGGKH 71 (102)
Q Consensus 12 vvy~~~~Cp~C~~---~L~~~~i~~~~~-----~i~id~~~~~~~~~~~l~~~~g~~~vP~i-fi~g~~ 71 (102)
+=|..|||.+|++ +.++-|.+..-. +=.+|... ...+....|.+..|+| |..|.+
T Consensus 48 VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~-----f~aiAnefgiqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 48 VDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR-----FPAIANEFGIQGYPTIKFFKGDH 111 (468)
T ss_pred EEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc-----chhhHhhhccCCCceEEEecCCe
Confidence 4477899999999 666655544300 22333221 3345556788899988 444433
No 233
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.91 E-value=0.36 Score=40.22 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=11.8
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
|+-|..+|||.|+.
T Consensus 424 ll~FWAsWC~pC~~ 437 (1057)
T PLN02919 424 ILDFWTYCCINCMH 437 (1057)
T ss_pred EEEEECCcChhHHh
Confidence 44489999999999
No 234
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.55 E-value=0.14 Score=31.97 Aligned_cols=32 Identities=6% Similarity=0.139 Sum_probs=25.5
Q ss_pred CceEEecCCCCHHHHH---HHhhCCCCCccceEEecc
Q 034150 9 NEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLIL 42 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~ 42 (102)
..+++|++|.|+-|.. +|.+..=+|+ +..|+.
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~--ilrVNI 37 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYD--ILRVNI 37 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhcccc--EEEEEe
Confidence 4578999999999999 7877777787 655554
No 235
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=93.31 E-value=0.29 Score=32.22 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=25.3
Q ss_pred ecCCCCHHHHH----HH------hhCCCCCccceEEeccCCChHHHHHH----HHHHhCCCCcceE-EE--cCeEE
Q 034150 14 PPLESCAFCLV----LF------SSTNNKFLKSLHVLILEGDGSKIQAA----LAEWTGQRTVPNV-FI--GGKHI 72 (102)
Q Consensus 14 y~~~~Cp~C~~----~L------~~~~i~~~~~~i~id~~~~~~~~~~~----l~~~~g~~~vP~i-fi--~g~~i 72 (102)
++.+||++|+. .+ +-.+-.|- -|.+|.+.. +++... ....+|....|.. |. +|+.+
T Consensus 44 ig~~~C~wChvM~~esf~d~eVa~~lN~~FI--~VkvDree~-Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 44 IGYSWCHWCHVMERESFSDPEVAEYLNRNFI--PVKVDREER-PDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp EE-TT-HHHHHHHHHTTT-HHHHHHHHHH-E--EEEEETTT--HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred EEecCCcchhhhcccCcCCHHHHHHHhCCEE--EEEeccccC-ccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 57799999998 22 22233344 444554432 443333 3345678888855 44 55544
No 236
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=93.29 E-value=0.24 Score=30.71 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=11.6
Q ss_pred eEEecCCCCHH-HHH
Q 034150 11 ACCPPLESCAF-CLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~-C~~ 24 (102)
|+.|..+|||+ |.+
T Consensus 26 vl~f~~~~C~~~C~~ 40 (142)
T cd02968 26 LVYFGYTHCPDVCPT 40 (142)
T ss_pred EEEEEcCCCcccCHH
Confidence 56678899998 987
No 237
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=93.00 E-value=0.25 Score=31.45 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=12.3
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
|+.|..+|||+|.+
T Consensus 26 vv~~~as~C~~c~~ 39 (153)
T TIGR02540 26 LVVNVASECGFTDQ 39 (153)
T ss_pred EEEEeCCCCCchhh
Confidence 56688999999998
No 238
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=92.98 E-value=0.21 Score=31.83 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=10.6
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
|+.|..+||| |.+
T Consensus 26 vl~fwatwC~-C~~ 38 (152)
T cd00340 26 LIVNVASKCG-FTP 38 (152)
T ss_pred EEEEEcCCCC-chH
Confidence 3447889999 999
No 239
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=0.11 Score=32.67 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=8.1
Q ss_pred CCCCHHHHH
Q 034150 16 LESCAFCLV 24 (102)
Q Consensus 16 ~~~Cp~C~~ 24 (102)
.||||+|.+
T Consensus 42 qSWCPdCV~ 50 (128)
T KOG3425|consen 42 QSWCPDCVA 50 (128)
T ss_pred CcCCchHHH
Confidence 489999999
No 240
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=92.78 E-value=0.47 Score=29.42 Aligned_cols=14 Identities=21% Similarity=0.327 Sum_probs=10.6
Q ss_pred eEEe-cCCCCHHHHH
Q 034150 11 ACCP-PLESCAFCLV 24 (102)
Q Consensus 11 vvvy-~~~~Cp~C~~ 24 (102)
|++| ..+|||.|+.
T Consensus 27 vl~f~~~~~Cp~C~~ 41 (149)
T cd02970 27 VVVFYRGFGCPFCRE 41 (149)
T ss_pred EEEEECCCCChhHHH
Confidence 3444 4789999999
No 241
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=92.77 E-value=0.23 Score=32.38 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.1
Q ss_pred hCCCCcceEEEcCeEEechHHHHHH
Q 034150 57 TGQRTVPNVFIGGKHIGGCDTVVEK 81 (102)
Q Consensus 57 ~g~~~vP~ifi~g~~igg~~~l~~~ 81 (102)
.|..++|++++||+.+-|.+.+..+
T Consensus 163 ~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 163 RGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred cCCCcCCeEEECCeeecccccHHHH
Confidence 4899999999999998888876543
No 242
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.75 E-value=0.28 Score=31.01 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=17.6
Q ss_pred hCCCCcceEEEcCeEEechHHHH
Q 034150 57 TGQRTVPNVFIGGKHIGGCDTVV 79 (102)
Q Consensus 57 ~g~~~vP~ifi~g~~igg~~~l~ 79 (102)
.|..++|+++|||+.+.|..++.
T Consensus 132 ~~i~~tPt~~inG~~~~~~~~~~ 154 (162)
T PF13462_consen 132 LGITGTPTFFINGKYVVGPYTIE 154 (162)
T ss_dssp HT-SSSSEEEETTCEEETTTSHH
T ss_pred cCCccccEEEECCEEeCCCCCHH
Confidence 57889999999999998654443
No 243
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.31 Score=35.81 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=34.1
Q ss_pred CceEEecCCCCHHHHH---HH----hhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 9 NEACCPPLESCAFCLV---LF----SSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~---~L----~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
.-++.|..+||++|++ .+ ..+.-... +-.+|... ...+.+.++...+|++.+
T Consensus 49 ~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~--~~~vd~~~-----~~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 49 PWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVK--IGAVDCDE-----HKDLCEKYGIQGFPTLKV 107 (383)
T ss_pred ceEEEEECCCCcchhhhchHHHHHHHHhcCceE--EEEeCchh-----hHHHHHhcCCccCcEEEE
Confidence 4578899999999999 22 22222233 44555432 355777789999998844
No 244
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=92.72 E-value=0.26 Score=30.86 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=8.7
Q ss_pred cCCCCHHHHH
Q 034150 15 PLESCAFCLV 24 (102)
Q Consensus 15 ~~~~Cp~C~~ 24 (102)
..+|||.|.+
T Consensus 37 ~~~~c~~C~~ 46 (149)
T cd03018 37 PLAFTPVCTK 46 (149)
T ss_pred CCCCCccHHH
Confidence 3789999998
No 245
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=92.66 E-value=0.36 Score=33.42 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=34.5
Q ss_pred hCCCCcceE--EEcCeEEechHHHH----HHHHCCCcHHHHHhcCchhhhc
Q 034150 57 TGQRTVPNV--FIGGKHIGGCDTVV----EKHQGGKLVPLLRDAGALALAD 101 (102)
Q Consensus 57 ~g~~~vP~i--fi~g~~igg~~~l~----~~~~~g~L~~~l~~~g~~~~~~ 101 (102)
.....+|++ +-||+.||.|-.+. +-+-.|+|..+|++.|++..++
T Consensus 207 F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gllpe~e 257 (273)
T KOG3171|consen 207 FSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLLPERE 257 (273)
T ss_pred hcccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCCcccc
Confidence 344678866 56999999996544 4456789999999999987654
No 246
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.95 E-value=0.69 Score=35.17 Aligned_cols=64 Identities=20% Similarity=0.468 Sum_probs=43.6
Q ss_pred CCCCHHHHH--HHh----hCCCCCccceEEeccCCChHHHHHHHHHH---hC--CCCcceEEE-------cCeEEechHH
Q 034150 16 LESCAFCLV--LFS----STNNKFLKSLHVLILEGDGSKIQAALAEW---TG--QRTVPNVFI-------GGKHIGGCDT 77 (102)
Q Consensus 16 ~~~Cp~C~~--~L~----~~~i~~~~~~i~id~~~~~~~~~~~l~~~---~g--~~~vP~ifi-------~g~~igg~~~ 77 (102)
+.+|||=.+ +|. ..=-+|. +..|-.+++. -.++|++. .| +..-|.|.- .|-.+||+++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~--~~ki~~~p~~--w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~ 76 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFR--VHKIVKHPDE--WEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNE 76 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCce--EEEccCChHH--HHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHH
Confidence 468999888 443 3334577 8888887643 34556554 34 456799964 4569999999
Q ss_pred HHHHHH
Q 034150 78 VVEKHQ 83 (102)
Q Consensus 78 l~~~~~ 83 (102)
++++.+
T Consensus 77 f~e~~~ 82 (452)
T cd05295 77 FLEYAE 82 (452)
T ss_pred HHHHHH
Confidence 998765
No 247
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=1.3 Score=30.27 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=48.9
Q ss_pred CceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 9 NEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
....++.-+....+.- +|.-.|++|+ .+.+..... -..++......++|++-+||..+.-+..+..+..
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~fE--d~r~~~~~~----w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLA 73 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVSFE--DKRITMEDA----WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLA 73 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCCcc--eeeeccccc----hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHH
Confidence 3455555566666665 8899999999 666665421 2345555678899999999999988877766654
No 248
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=91.60 E-value=0.57 Score=32.59 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=12.0
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
|+.|..+|||.|..
T Consensus 103 vl~FwAswCp~c~~ 116 (236)
T PLN02399 103 LIVNVASKCGLTSS 116 (236)
T ss_pred EEEEEcCCCcchHH
Confidence 55688999999987
No 249
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.59 E-value=1.5 Score=24.78 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=9.3
Q ss_pred cCCCCHHHHH
Q 034150 15 PLESCAFCLV 24 (102)
Q Consensus 15 ~~~~Cp~C~~ 24 (102)
..+|||+|+.
T Consensus 40 ~~~~C~~C~~ 49 (127)
T COG0526 40 WAPWCPPCRA 49 (127)
T ss_pred EcCcCHHHHh
Confidence 5999999999
No 250
>PLN02412 probable glutathione peroxidase
Probab=91.58 E-value=0.54 Score=30.59 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=11.2
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
|+.|..+|||.|.+
T Consensus 33 lv~f~a~~C~~c~~ 46 (167)
T PLN02412 33 LIVNVASKCGLTDS 46 (167)
T ss_pred EEEEeCCCCCChHH
Confidence 34477899999996
No 251
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.38 E-value=0.65 Score=36.23 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=36.8
Q ss_pred ceEE-ecCCCCHHHHH----HHhhCC-----CCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 10 EACC-PPLESCAFCLV----LFSSTN-----NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 10 ~vvv-y~~~~Cp~C~~----~L~~~~-----i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
+|.+ |+.+||--|+. .|.+-. ..+. ....|...+.++.++.|++ .|.-.+|.++.
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~v--lLqaDvT~~~p~~~~lLk~-~~~~G~P~~~f 540 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVV--LLQADVTANDPAITALLKR-LGVFGVPTYLF 540 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeE--EEEeeecCCCHHHHHHHHH-cCCCCCCEEEE
Confidence 4444 89999999999 332211 1233 5566766565887777775 78888997743
No 252
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.08 E-value=0.16 Score=31.59 Aligned_cols=17 Identities=12% Similarity=0.049 Sum_probs=14.8
Q ss_pred CCceEEecCCCCHHHHH
Q 034150 8 VNEACCPPLESCAFCLV 24 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~ 24 (102)
...|++|+..+||+|.+
T Consensus 6 ~~~i~~f~D~~Cp~C~~ 22 (154)
T cd03023 6 DVTIVEFFDYNCGYCKK 22 (154)
T ss_pred CEEEEEEECCCChhHHH
Confidence 34688899999999999
No 253
>PTZ00056 glutathione peroxidase; Provisional
Probab=90.92 E-value=0.38 Score=32.34 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=11.5
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
++.|..+|||+|.+
T Consensus 43 lv~fwAswC~~C~~ 56 (199)
T PTZ00056 43 MITNSASKCGLTKK 56 (199)
T ss_pred EEEEECCCCCChHH
Confidence 44578899999997
No 254
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=90.87 E-value=0.22 Score=35.46 Aligned_cols=71 Identities=8% Similarity=0.010 Sum_probs=55.6
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
.++|.-+..-.+++ ++.++||+|+ .++|+.. .+.....++..++....||++.-+...|-..+.+.++.++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~--~y~V~l~-~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCE--EYDVSLP-QGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccc--eeeccCc-cccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 78888887777777 8899999999 5555543 2244556777778888999987777788899999999887
No 255
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=90.61 E-value=0.68 Score=31.45 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=31.3
Q ss_pred cCCceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHH
Q 034150 7 FVNEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALA 54 (102)
Q Consensus 7 ~~~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~ 54 (102)
...++.+|.+..|+.|.. .+.+-+-++. ++-++...+...++..-.
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~D--iylvgs~~dD~~Ir~WA~ 156 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLD--LYLVGSQGDDERIRQWAN 156 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCcee--EEEecCCCCHHHHHHHHH
Confidence 345799999999999999 4445567788 666665444455555443
No 256
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=90.25 E-value=0.64 Score=33.88 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=36.2
Q ss_pred ccCCceEE--ecCCCCHHHHH---HHhhCCCCC-------ccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeE
Q 034150 6 VFVNEACC--PPLESCAFCLV---LFSSTNNKF-------LKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKH 71 (102)
Q Consensus 6 i~~~~vvv--y~~~~Cp~C~~---~L~~~~i~~-------~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~ 71 (102)
+..+.+++ |..+||||++. ++.+....| ...+=.||-+ ..+.+...+.....|++ |.+|..
T Consensus 10 l~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd-----~e~~ia~ky~I~KyPTlKvfrnG~~ 84 (375)
T KOG0912|consen 10 LDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD-----KEDDIADKYHINKYPTLKVFRNGEM 84 (375)
T ss_pred hccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc-----hhhHHhhhhccccCceeeeeeccch
Confidence 44555554 88899999999 444321111 1002234432 14567777777888876 778854
Q ss_pred E
Q 034150 72 I 72 (102)
Q Consensus 72 i 72 (102)
+
T Consensus 85 ~ 85 (375)
T KOG0912|consen 85 M 85 (375)
T ss_pred h
Confidence 3
No 257
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=90.10 E-value=0.74 Score=27.74 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=38.2
Q ss_pred EecCCCCHHHHH---HHhhCCC--CCccceEEeccCCChHHHHHHHHHH--h--CCCCcceEEEcCe-EEechHHHHHHH
Q 034150 13 CPPLESCAFCLV---LFSSTNN--KFLKSLHVLILEGDGSKIQAALAEW--T--GQRTVPNVFIGGK-HIGGCDTVVEKH 82 (102)
Q Consensus 13 vy~~~~Cp~C~~---~L~~~~i--~~~~~~i~id~~~~~~~~~~~l~~~--~--g~~~vP~ifi~g~-~igg~~~l~~~~ 82 (102)
||....||+|.. ++..... .++ ++++....+ .+.+... + ...+.-.+.-+|+ ...|++-+..+.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~--~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~ 74 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLR--FVDIQSEPD----QALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLL 74 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEE--EEECCChhh----hhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHH
Confidence 355688999999 6666653 455 666633221 1112111 1 1223334444776 889999888776
Q ss_pred HCC
Q 034150 83 QGG 85 (102)
Q Consensus 83 ~~g 85 (102)
..-
T Consensus 75 ~~~ 77 (114)
T PF04134_consen 75 RRL 77 (114)
T ss_pred HHc
Confidence 653
No 258
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=90.05 E-value=0.27 Score=32.01 Aligned_cols=53 Identities=23% Similarity=0.209 Sum_probs=30.5
Q ss_pred HHhhCCCCCccceEEeccCCChHHHHHHHH------HHhCCCCcceEEEcCe-EEechHHHHHH
Q 034150 25 LFSSTNNKFLKSLHVLILEGDGSKIQAALA------EWTGQRTVPNVFIGGK-HIGGCDTVVEK 81 (102)
Q Consensus 25 ~L~~~~i~~~~~~i~id~~~~~~~~~~~l~------~~~g~~~vP~ifi~g~-~igg~~~l~~~ 81 (102)
++.+.|++.. .++..-+.+..++.++ ...|...+|.+++||+ .+-|.+.+-.+
T Consensus 129 ~~~~~Gld~~----~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 129 IAEEAGLDPD----EFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHTT--HH----HHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHcCCcHH----HHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHH
Confidence 5566777654 2222111133334333 2358999999999999 77787765443
No 259
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=89.99 E-value=0.24 Score=31.33 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=21.8
Q ss_pred CceEEecCCCCHHHHH-------HHhhC----CCCCccceEEeccC
Q 034150 9 NEACCPPLESCAFCLV-------LFSST----NNKFLKSLHVLILE 43 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~-------~L~~~----~i~~~~~~i~id~~ 43 (102)
..|++|....||+|.+ +++++ .+.+. ++.+...
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~--~~~~~~~ 57 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFV--FRPVPLD 57 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEE--EEESSSS
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEE--EEEcccc
Confidence 3588899999999999 45554 34455 5555443
No 260
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=89.93 E-value=0.51 Score=32.97 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=34.0
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCccceE---------Eecc------CCChHHHHHHHHHHhCCCC--cceEEEcCe
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFLKSLH---------VLIL------EGDGSKIQAALAEWTGQRT--VPNVFIGGK 70 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i---------~id~------~~~~~~~~~~l~~~~g~~~--vP~ifi~g~ 70 (102)
|.+||..+|..|.- .|.++--+.. ++ |.-. ..+-.+-+..+....|.++ .||.+++|+
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~--vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPG--VLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCC--EEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 78899999888877 5555433222 11 1111 1111233334444445443 499999997
Q ss_pred -EEech
Q 034150 71 -HIGGC 75 (102)
Q Consensus 71 -~igg~ 75 (102)
+.-|.
T Consensus 123 ~~~~Ga 128 (261)
T COG5429 123 VHANGA 128 (261)
T ss_pred hhhcCC
Confidence 44443
No 261
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=89.83 E-value=2.2 Score=26.12 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=37.3
Q ss_pred CCceEEecC-CCCHHHHH-------HHhhCC--CCCccceEEeccCCChHHHHHHHHHHhCC-CCcceEE--EcCeEEe
Q 034150 8 VNEACCPPL-ESCAFCLV-------LFSSTN--NKFLKSLHVLILEGDGSKIQAALAEWTGQ-RTVPNVF--IGGKHIG 73 (102)
Q Consensus 8 ~~~vvvy~~-~~Cp~C~~-------~L~~~~--i~~~~~~i~id~~~~~~~~~~~l~~~~g~-~~vP~if--i~g~~ig 73 (102)
..+++||=- +.||-+.. +++... +++. ++++-.. ..+-+++.+.+|. -.-||++ .||+.+-
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y--~l~v~~~---R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~ 92 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVY--YLDVIEY---RPVSNAIAEDFGVKHESPQVILIKNGKVVW 92 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EE--EEEGGGG---HHHHHHHHHHHT----SSEEEEEETTEEEE
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEE--EEEEEeC---chhHHHHHHHhCCCcCCCcEEEEECCEEEE
Confidence 346777744 45999988 333333 6665 6666654 7788889888885 3568885 4888764
No 262
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=89.78 E-value=0.73 Score=28.58 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=20.7
Q ss_pred hCCCCcceEEEcCeEEechHHHHHH
Q 034150 57 TGQRTVPNVFIGGKHIGGCDTVVEK 81 (102)
Q Consensus 57 ~g~~~vP~ifi~g~~igg~~~l~~~ 81 (102)
.|...+|+++++|+.+-|+.+...+
T Consensus 125 ~gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 125 LGITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred cCCCcCCeEEECCEEecCCCCHHHH
Confidence 4888999999999999888765444
No 263
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=89.46 E-value=0.66 Score=28.60 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=7.9
Q ss_pred CCCCHHHHH
Q 034150 16 LESCAFCLV 24 (102)
Q Consensus 16 ~~~Cp~C~~ 24 (102)
..|||.|..
T Consensus 33 ~~~cp~C~~ 41 (140)
T cd03017 33 KDDTPGCTK 41 (140)
T ss_pred CCCCCchHH
Confidence 579999987
No 264
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=0.74 Score=34.44 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=33.0
Q ss_pred EEecCCCCHHHHH------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEe
Q 034150 12 CCPPLESCAFCLV------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIG 73 (102)
Q Consensus 12 vvy~~~~Cp~C~~------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~ig 73 (102)
.-|..-+|..|.. ++.-.+-..+ -.-||. .-.+++... -+..+||++|.||+..|
T Consensus 121 ETy~SltC~nCPDVVQALN~msvlNp~I~--H~~IdG----a~Fq~Evea-r~IMaVPtvflnGe~fg 181 (520)
T COG3634 121 ETYFSLTCHNCPDVVQALNLMSVLNPRIK--HTAIDG----ALFQDEVEA-RNIMAVPTVFLNGEEFG 181 (520)
T ss_pred EEEEEeeccCChHHHHHHHHHHhcCCCce--eEEecc----hhhHhHHHh-ccceecceEEEcchhhc
Confidence 3355555666666 3333333333 334543 455666654 46789999999999776
No 265
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=88.99 E-value=1.1 Score=27.47 Aligned_cols=15 Identities=7% Similarity=-0.101 Sum_probs=10.5
Q ss_pred ceEEe-c-CCCCHHHHH
Q 034150 10 EACCP-P-LESCAFCLV 24 (102)
Q Consensus 10 ~vvvy-~-~~~Cp~C~~ 24 (102)
+++|+ . ..|||.|..
T Consensus 24 ~~ll~f~~~~~c~~C~~ 40 (140)
T cd02971 24 WVVLFFYPKDFTPVCTT 40 (140)
T ss_pred eEEEEEeCCCCCCcCHH
Confidence 34443 3 579999999
No 266
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=88.34 E-value=0.7 Score=29.65 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=14.7
Q ss_pred CCceEEecCCCCHHHHH
Q 034150 8 VNEACCPPLESCAFCLV 24 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~ 24 (102)
...|+.|+...||+|.+
T Consensus 16 ~~~i~~f~D~~Cp~C~~ 32 (178)
T cd03019 16 KPEVIEFFSYGCPHCYN 32 (178)
T ss_pred CcEEEEEECCCCcchhh
Confidence 34688899999999999
No 267
>PRK13190 putative peroxiredoxin; Provisional
Probab=88.16 E-value=0.61 Score=31.37 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=11.3
Q ss_pred eEE--ecCCCCHHHHH
Q 034150 11 ACC--PPLESCAFCLV 24 (102)
Q Consensus 11 vvv--y~~~~Cp~C~~ 24 (102)
++| |-.+|||.|..
T Consensus 30 vvL~~~p~~~cp~C~~ 45 (202)
T PRK13190 30 VLLFSHPADFTPVCTT 45 (202)
T ss_pred EEEEEEcCCCCCCCHH
Confidence 554 57799999998
No 268
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=1.7 Score=31.96 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=29.2
Q ss_pred ceEEecCCCCHHHHH----------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE
Q 034150 10 EACCPPLESCAFCLV----------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF 66 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~----------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if 66 (102)
.++.|..|||++|+. .+++ +.... +..+|.. ....+....+.+.+|++.
T Consensus 165 ~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~--~~~~d~~-----~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 165 WLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVE--LGKIDAT-----VHKSLASRLEVRGYPTLK 223 (383)
T ss_pred eEEEEeccccHHhhhcChHHHHHHHHhcc-CcceE--EEeeccc-----hHHHHhhhhcccCCceEE
Confidence 478889999999999 2222 23334 4455543 123345556667777663
No 269
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=87.86 E-value=2.2 Score=26.48 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=9.8
Q ss_pred ceEE-ecCCC-CHHHHH
Q 034150 10 EACC-PPLES-CAFCLV 24 (102)
Q Consensus 10 ~vvv-y~~~~-Cp~C~~ 24 (102)
+++| |..+| ||+|.+
T Consensus 28 ~vvl~f~~~~~c~~C~~ 44 (143)
T cd03014 28 VKVISVFPSIDTPVCAT 44 (143)
T ss_pred eEEEEEEcCCCCCcCHH
Confidence 3444 44455 799999
No 270
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=87.84 E-value=0.68 Score=31.09 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=11.2
Q ss_pred eEE--ecCCCCHHHHH
Q 034150 11 ACC--PPLESCAFCLV 24 (102)
Q Consensus 11 vvv--y~~~~Cp~C~~ 24 (102)
+++ |-.+|||.|..
T Consensus 28 vvlf~~pa~~cp~C~~ 43 (203)
T cd03016 28 GILFSHPADFTPVCTT 43 (203)
T ss_pred EEEEEecCCCCCcCHH
Confidence 554 66789999999
No 271
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=87.80 E-value=2.3 Score=27.03 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=23.6
Q ss_pred eEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEEec
Q 034150 37 LHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHIGG 74 (102)
Q Consensus 37 ~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~igg 74 (102)
+..+|.+.+ .++...+|..++|++ |-||+.+|-
T Consensus 72 ~akVDiD~~-----~~LA~~fgV~siPTLl~FkdGk~v~~ 106 (132)
T PRK11509 72 VAIADLEQS-----EAIGDRFGVFRFPATLVFTGGNYRGV 106 (132)
T ss_pred EEEEECCCC-----HHHHHHcCCccCCEEEEEECCEEEEE
Confidence 455555432 557888999999977 669987753
No 272
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=87.67 E-value=0.72 Score=30.54 Aligned_cols=15 Identities=7% Similarity=-0.139 Sum_probs=11.4
Q ss_pred ceEEec--CCCCHHHHH
Q 034150 10 EACCPP--LESCAFCLV 24 (102)
Q Consensus 10 ~vvvy~--~~~Cp~C~~ 24 (102)
.++||. .+|||.|..
T Consensus 33 ~vvl~F~p~~~cp~C~~ 49 (187)
T TIGR03137 33 WSVFFFYPADFTFVCPT 49 (187)
T ss_pred EEEEEEECCCcCCcCHH
Confidence 355554 699999999
No 273
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=87.50 E-value=0.87 Score=29.57 Aligned_cols=15 Identities=13% Similarity=-0.062 Sum_probs=10.8
Q ss_pred ceEEec--CCCCHHHHH
Q 034150 10 EACCPP--LESCAFCLV 24 (102)
Q Consensus 10 ~vvvy~--~~~Cp~C~~ 24 (102)
.++||. .+|||.|..
T Consensus 31 ~vvl~F~~~~~c~~C~~ 47 (173)
T cd03015 31 WVVLFFYPLDFTFVCPT 47 (173)
T ss_pred EEEEEEECCCCCCcCHH
Confidence 344443 689999998
No 274
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=87.18 E-value=0.84 Score=30.70 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=16.7
Q ss_pred hCCCCcceEEEcCeEEechHH
Q 034150 57 TGQRTVPNVFIGGKHIGGCDT 77 (102)
Q Consensus 57 ~g~~~vP~ifi~g~~igg~~~ 77 (102)
.|.+++|+++|||+++-+...
T Consensus 163 ~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 163 LQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred cCCCCCCEEEECCEEEEcccc
Confidence 478899999999998655443
No 275
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=86.65 E-value=2.9 Score=27.10 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=10.1
Q ss_pred eEEecCCC-CHHHHH
Q 034150 11 ACCPPLES-CAFCLV 24 (102)
Q Consensus 11 vvvy~~~~-Cp~C~~ 24 (102)
|+.|..+| ||.|.+
T Consensus 48 vl~f~~s~~cp~C~~ 62 (167)
T PRK00522 48 VLNIFPSIDTGVCAT 62 (167)
T ss_pred EEEEEcCCCCCccHH
Confidence 34455566 999999
No 276
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=86.06 E-value=1.7 Score=27.38 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=6.9
Q ss_pred CCCCHHHHH
Q 034150 16 LESCAFCLV 24 (102)
Q Consensus 16 ~~~Cp~C~~ 24 (102)
..|||.|..
T Consensus 40 ~~~~p~C~~ 48 (154)
T PRK09437 40 KAMTPGCTV 48 (154)
T ss_pred CCCCCchHH
Confidence 458999976
No 277
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=84.66 E-value=1.7 Score=32.02 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=48.2
Q ss_pred CCceEEecCCCCHHHHH-HHhhCCCCCccceEEeccC--CChHHHHHHHHHHhCCCCcceEE--EcC-eEEechHHHHHH
Q 034150 8 VNEACCPPLESCAFCLV-LFSSTNNKFLKSLHVLILE--GDGSKIQAALAEWTGQRTVPNVF--IGG-KHIGGCDTVVEK 81 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~-~L~~~~i~~~~~~i~id~~--~~~~~~~~~l~~~~g~~~vP~if--i~g-~~igg~~~l~~~ 81 (102)
..+.++|..+.+.||.. ...-.|+... .|.+|.+ .+..++++.+.+......+|.++ .-| ..-|.+|++.++
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~--~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i 216 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVR--KIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEI 216 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEE--EE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHH
T ss_pred ccccccccccccccHHHHhcceeeeEEE--EecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHH
Confidence 45788999999999999 8788888877 7777763 34466777777655556678443 344 456777877654
Q ss_pred H
Q 034150 82 H 82 (102)
Q Consensus 82 ~ 82 (102)
.
T Consensus 217 ~ 217 (373)
T PF00282_consen 217 A 217 (373)
T ss_dssp H
T ss_pred h
Confidence 3
No 278
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=84.30 E-value=0.8 Score=27.80 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=14.0
Q ss_pred ceEEecCCCCHHHHH
Q 034150 10 EACCPPLESCAFCLV 24 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~ 24 (102)
+|.||..+-||+|++
T Consensus 2 ~v~vyyESlCPd~~~ 16 (108)
T PF03227_consen 2 NVEVYYESLCPDCRR 16 (108)
T ss_pred EEEEEEEecCHhHHH
Confidence 588999999999999
No 279
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=84.03 E-value=0.4 Score=36.78 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=16.6
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCC
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKF 33 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~ 33 (102)
.+-|..|||++|++ ++++++-.|
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHh
Confidence 45588899999999 555554433
No 280
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.12 E-value=1.4 Score=30.51 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.9
Q ss_pred CceEEecCCCCHHHHH
Q 034150 9 NEACCPPLESCAFCLV 24 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~ 24 (102)
-+|.+|+..-||+|-.
T Consensus 6 i~I~v~sD~vCPwC~i 21 (225)
T COG2761 6 IEIDVFSDVVCPWCYI 21 (225)
T ss_pred EEEEEEeCCcCchhhc
Confidence 3688899999999987
No 281
>PRK13599 putative peroxiredoxin; Provisional
Probab=82.73 E-value=1.8 Score=29.54 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=9.5
Q ss_pred ecCCCCHHHHH
Q 034150 14 PPLESCAFCLV 24 (102)
Q Consensus 14 y~~~~Cp~C~~ 24 (102)
|-.+|||.|..
T Consensus 36 ~pa~~tpvCt~ 46 (215)
T PRK13599 36 HPADFTPVCTT 46 (215)
T ss_pred eCCCCCCcCHH
Confidence 56689999999
No 282
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=81.88 E-value=1.4 Score=28.61 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=23.7
Q ss_pred ceEEecCCCCHHHHH-------HHhhC-CCCCccceEEeccC
Q 034150 10 EACCPPLESCAFCLV-------LFSST-NNKFLKSLHVLILE 43 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~-------~L~~~-~i~~~~~~i~id~~ 43 (102)
+|++|....||||-. +.+.. +++++ +..+...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~--~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIE--WRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEE--EEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEE--Eeccccc
Confidence 488999999999998 55566 77766 5555543
No 283
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=81.59 E-value=3.3 Score=27.58 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=11.7
Q ss_pred eEEecCCCCHHHHH
Q 034150 11 ACCPPLESCAFCLV 24 (102)
Q Consensus 11 vvvy~~~~Cp~C~~ 24 (102)
++++..+||++|..
T Consensus 29 LVvf~AS~C~~~~q 42 (183)
T PRK10606 29 LIVNVASKCGLTPQ 42 (183)
T ss_pred EEEEEeCCCCCcHH
Confidence 46688999999976
No 284
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=81.29 E-value=3.5 Score=25.82 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCHHHHH--------------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEE
Q 034150 18 SCAFCLV--------------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHI 72 (102)
Q Consensus 18 ~Cp~C~~--------------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~i 72 (102)
+|+-|.. .|...|+... +-++...+ +++.... -+.|.|.|||+.+
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~--l~~~~l~~------~~~~~~~--~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVR--LEEIELDE------EEFARQP--LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEE--EEEEECCh------HHHhhcc--cCCCeeeECCEeh
Confidence 7988877 6788898776 44554432 1222111 5679999999865
No 285
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=81.25 E-value=0.54 Score=31.97 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=51.9
Q ss_pred CceEE-ecCCCCHHHHH------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCe---EEechH
Q 034150 9 NEACC-PPLESCAFCLV------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGK---HIGGCD 76 (102)
Q Consensus 9 ~~vvv-y~~~~Cp~C~~------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~---~igg~~ 76 (102)
.+||+ |..+.---|+- .|....+.-. ++.|+... ...|....+...+|+| |.+|. +|-||+
T Consensus 85 ~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTr--Fikvnae~-----~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~ 157 (211)
T KOG1672|consen 85 EKVVCHFYRPEFFRCKIMDKHLEILAKRHVETR--FIKVNAEK-----APFLVTKLNIKVLPTVALFKNGKTVDYVVGFT 157 (211)
T ss_pred ceEEEEEEcCCCcceehHHHHHHHHHHhcccce--EEEEeccc-----CceeeeeeeeeEeeeEEEEEcCEEEEEEeeHh
Confidence 34443 66666444544 7777777777 77887642 2345566788899987 77886 567887
Q ss_pred HHH--HHHHCCCcHHHHHhcCch
Q 034150 77 TVV--EKHQGGKLVPLLRDAGAL 97 (102)
Q Consensus 77 ~l~--~~~~~g~L~~~l~~~g~~ 97 (102)
+|= .-.....|+..|...|+|
T Consensus 158 dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 158 DLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred hcCCCCcCcHHHHHHHHhhccce
Confidence 762 122333567777777764
No 286
>PRK13189 peroxiredoxin; Provisional
Probab=81.01 E-value=2.3 Score=29.12 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=11.2
Q ss_pred eEE--ecCCCCHHHHH
Q 034150 11 ACC--PPLESCAFCLV 24 (102)
Q Consensus 11 vvv--y~~~~Cp~C~~ 24 (102)
+++ |-.+|||.|..
T Consensus 38 vvL~f~pa~fcpvC~t 53 (222)
T PRK13189 38 FVLFSHPADFTPVCTT 53 (222)
T ss_pred EEEEEeCCCCCCCCHH
Confidence 554 56789999998
No 287
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=80.93 E-value=9.8 Score=24.94 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=44.4
Q ss_pred EEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHH----------------------hCCCCcceEE
Q 034150 12 CCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEW----------------------TGQRTVPNVF 66 (102)
Q Consensus 12 vvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~----------------------~g~~~vP~if 66 (102)
++=++++=|++++ .|+.+|++|+ ..-...+-....+.+.+++. .+..++|+|=
T Consensus 4 imGS~SD~~~~~~a~~~L~~~gi~~d--v~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIg 81 (156)
T TIGR01162 4 IMGSDSDLPTMKKAADILEEFGIPYE--LRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIG 81 (156)
T ss_pred EECcHhhHHHHHHHHHHHHHcCCCeE--EEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEE
Confidence 3345566677777 8999999998 55555543334444444421 1345677772
Q ss_pred --EcCeEEechHHHHHHHH
Q 034150 67 --IGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 67 --i~g~~igg~~~l~~~~~ 83 (102)
+.....+|.|.|..+.+
T Consensus 82 vP~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 82 VPVPSKALSGLDSLLSIVQ 100 (156)
T ss_pred ecCCccCCCCHHHHHHHhc
Confidence 34456788888888777
No 288
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=80.57 E-value=13 Score=24.50 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=43.4
Q ss_pred EEecCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHh--C--------------------CCCcceE-
Q 034150 12 CCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWT--G--------------------QRTVPNV- 65 (102)
Q Consensus 12 vvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~--g--------------------~~~vP~i- 65 (102)
+|=++++-+.-+. .|++.||+|+ ..-+..+-....+.++.+... | .+++|+|
T Consensus 8 IMGS~SD~~~mk~Aa~~L~~fgi~ye--~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViG 85 (162)
T COG0041 8 IMGSKSDWDTMKKAAEILEEFGVPYE--VRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIG 85 (162)
T ss_pred EecCcchHHHHHHHHHHHHHcCCCeE--EEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEe
Confidence 3345555555555 9999999999 666666544344444443211 1 2456776
Q ss_pred -EEcCeEEechHHHHHHHH
Q 034150 66 -FIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 66 -fi~g~~igg~~~l~~~~~ 83 (102)
-+..+.++|.|.|....+
T Consensus 86 VPv~s~~L~GlDSL~SiVQ 104 (162)
T COG0041 86 VPVQSKALSGLDSLLSIVQ 104 (162)
T ss_pred ccCccccccchHHHHHHhc
Confidence 457778889888776543
No 289
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=77.91 E-value=1.9 Score=28.28 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=17.0
Q ss_pred hCCCCcceEEEcCe-EEechHHH
Q 034150 57 TGQRTVPNVFIGGK-HIGGCDTV 78 (102)
Q Consensus 57 ~g~~~vP~ifi~g~-~igg~~~l 78 (102)
.|...+|++++||+ .+.|..+.
T Consensus 171 ~gv~G~Pt~vv~g~~~~~G~~~~ 193 (201)
T cd03024 171 LGISGVPFFVFNGKYAVSGAQPP 193 (201)
T ss_pred CCCCcCCEEEECCeEeecCCCCH
Confidence 48899999999987 45666543
No 290
>PRK13191 putative peroxiredoxin; Provisional
Probab=77.79 E-value=3.2 Score=28.25 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=9.7
Q ss_pred ecCCCCHHHHH
Q 034150 14 PPLESCAFCLV 24 (102)
Q Consensus 14 y~~~~Cp~C~~ 24 (102)
|-.+|||.|..
T Consensus 41 ~pa~ftpvC~t 51 (215)
T PRK13191 41 HPGDFTPVCTT 51 (215)
T ss_pred eCCCCCCcCHH
Confidence 57789999999
No 291
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=76.63 E-value=5.4 Score=27.06 Aligned_cols=56 Identities=9% Similarity=0.183 Sum_probs=28.2
Q ss_pred eEEecCCCCHH-HHH-------HH---h-hCCCCCccceEEeccCCChHHHHHHHHHHhC-CCCcceEEEcC
Q 034150 11 ACCPPLESCAF-CLV-------LF---S-STNNKFLKSLHVLILEGDGSKIQAALAEWTG-QRTVPNVFIGG 69 (102)
Q Consensus 11 vvvy~~~~Cp~-C~~-------~L---~-~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g-~~~vP~ifi~g 69 (102)
++.|+-+.||. |.. ++ . ..+.++. .+.|..|++ .+..+.|++... ....+-+.+-|
T Consensus 71 lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~--vv~itvDPe-rDtp~~lk~Y~~~~~~~~~~~ltg 139 (207)
T COG1999 71 LVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQ--VVFITVDPE-RDTPEVLKKYAELNFDPRWIGLTG 139 (207)
T ss_pred EEEeecCCCCccChHHHHHHHHHHHHhccccCCCEE--EEEEEECCC-CCCHHHHHHHhcccCCCCeeeeeC
Confidence 55677788884 666 23 3 4455666 444444433 222555555444 33333444443
No 292
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=75.20 E-value=6.4 Score=25.08 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=15.5
Q ss_pred hCCCCcceEEEcCeEEech
Q 034150 57 TGQRTVPNVFIGGKHIGGC 75 (102)
Q Consensus 57 ~g~~~vP~ifi~g~~igg~ 75 (102)
.|..++|+++|||+.+-+.
T Consensus 139 ~gi~gTPt~iInG~~~~~~ 157 (178)
T cd03019 139 YKITGVPAFVVNGKYVVNP 157 (178)
T ss_pred cCCCCCCeEEECCEEEECh
Confidence 5889999999999976443
No 293
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=74.73 E-value=5.9 Score=24.54 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=27.7
Q ss_pred CCHHHHH---HHhhCC-----CCCccceEEeccCCChHHHHHHHHHHhC--CCCcceEEEcC
Q 034150 18 SCAFCLV---LFSSTN-----NKFLKSLHVLILEGDGSKIQAALAEWTG--QRTVPNVFIGG 69 (102)
Q Consensus 18 ~Cp~C~~---~L~~~~-----i~~~~~~i~id~~~~~~~~~~~l~~~~g--~~~vP~ifi~g 69 (102)
.||+|.. +|...- ++.+ .|+...- |.++.+..| ..+.|+++.++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~--rV~f~RP------R~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVR--RVDFPRP------RQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEE--EeCCCCc------hHHHHHHhChhccCCCEEEeCC
Confidence 3999999 776542 3333 3333322 667776665 67999997755
No 294
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=74.63 E-value=33 Score=26.48 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=46.2
Q ss_pred cCCceEEecCCCCHHHHH-HHhhCCCC-CccceEEeccCCCh----HHHHHHHHHHhCCCCcceEEE---cCeEEechHH
Q 034150 7 FVNEACCPPLESCAFCLV-LFSSTNNK-FLKSLHVLILEGDG----SKIQAALAEWTGQRTVPNVFI---GGKHIGGCDT 77 (102)
Q Consensus 7 ~~~~vvvy~~~~Cp~C~~-~L~~~~i~-~~~~~i~id~~~~~----~~~~~~l~~~~g~~~vP~ifi---~g~~igg~~~ 77 (102)
...+.++|+...|.|+.+ .-.-+|+- .+ .+.|+.++.+ .+++..+.+.-....+|.+.- +-...|-||+
T Consensus 194 ~~p~lilFtSeesHYSi~kaAa~lg~gtd~--c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd 271 (510)
T KOG0629|consen 194 ALPPLILFTSEESHYSIKKAAAFLGLGTDH--CIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD 271 (510)
T ss_pred cCCcEEEEecccchhhHHHHHHHhccCCce--eEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc
Confidence 456899999999999999 44555542 34 4455554333 444444444334556787653 4457788888
Q ss_pred HHHHH
Q 034150 78 VVEKH 82 (102)
Q Consensus 78 l~~~~ 82 (102)
|....
T Consensus 272 L~~ia 276 (510)
T KOG0629|consen 272 LNGIA 276 (510)
T ss_pred HHHHH
Confidence 76543
No 295
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=73.33 E-value=9.5 Score=25.92 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=13.7
Q ss_pred CceEEecCCCCHHHHH
Q 034150 9 NEACCPPLESCAFCLV 24 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~ 24 (102)
..+++|....||||++
T Consensus 86 v~v~~f~d~~Cp~C~~ 101 (244)
T COG1651 86 VTVVEFFDYTCPYCKE 101 (244)
T ss_pred ceEEEEecCcCccHHH
Confidence 4578899999999977
No 296
>PLN02590 probable tyrosine decarboxylase
Probab=73.27 E-value=25 Score=27.47 Aligned_cols=72 Identities=8% Similarity=-0.042 Sum_probs=49.5
Q ss_pred CceEEecCCCCHHHHH-HHhhCCCC---CccceEEecc----CCChHHHHHHHHHHhCCCCcceEEE---cCeEEechHH
Q 034150 9 NEACCPPLESCAFCLV-LFSSTNNK---FLKSLHVLIL----EGDGSKIQAALAEWTGQRTVPNVFI---GGKHIGGCDT 77 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~-~L~~~~i~---~~~~~i~id~----~~~~~~~~~~l~~~~g~~~vP~ifi---~g~~igg~~~ 77 (102)
.++++|....+.+|.. .+.-.|+. .. .|.+|. ..+...+++.+.+-......|.+++ +-...|.+|+
T Consensus 228 ~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr--~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp 305 (539)
T PLN02590 228 PQLVVYGSDQTHSSFRKACLIGGIHEENIR--LLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP 305 (539)
T ss_pred CCEEEEecCCchHHHHHHHHHcCCCcccEE--EEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC
Confidence 4689999999999998 76777774 44 666663 2455777777766544556787655 3346677888
Q ss_pred HHHHH
Q 034150 78 VVEKH 82 (102)
Q Consensus 78 l~~~~ 82 (102)
+.++.
T Consensus 306 l~~Ia 310 (539)
T PLN02590 306 LVPLG 310 (539)
T ss_pred HHHHH
Confidence 76544
No 297
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=72.89 E-value=1.8 Score=33.88 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=31.7
Q ss_pred ceEEecCCCCHHHHH---HHhhCCC---CCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 10 EACCPPLESCAFCLV---LFSSTNN---KFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~---~L~~~~i---~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
.+|=|..+||++|++ .+++... ++.. ++-|-..+...+....+-+-.+.+.+|+++-
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~-vv~vaaVdCA~~~N~~lCRef~V~~~Ptlry 122 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRP-VVRVAAVDCADEENVKLCREFSVSGYPTLRY 122 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccc-eeEEEEeeccchhhhhhHhhcCCCCCceeee
Confidence 445567799999999 4443322 2221 2222221122333455666688889998854
No 298
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.06 E-value=13 Score=29.85 Aligned_cols=55 Identities=27% Similarity=0.361 Sum_probs=31.5
Q ss_pred ecCCCCHHHHH----------HHhhCCCCCccceEEecc--CCChHH-HHHHHHHHhCCCCcce-EEE--cCe
Q 034150 14 PPLESCAFCLV----------LFSSTNNKFLKSLHVLIL--EGDGSK-IQAALAEWTGQRTVPN-VFI--GGK 70 (102)
Q Consensus 14 y~~~~Cp~C~~----------~L~~~~i~~~~~~i~id~--~~~~~~-~~~~l~~~~g~~~vP~-ifi--~g~ 70 (102)
.+.+||.+|+. +-+-+|-.|- -|.||. .+|-.. +.+..+.++|+..-|. ||. ||+
T Consensus 50 IGys~CHWChVM~~ESf~d~eiA~~lN~~FV--~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 50 IGYSTCHWCHVMAHESFEDPEIAAILNENFV--PVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred eccccccchHHHhhhcCCCHHHHHHHHhCce--eeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCc
Confidence 46689999998 3333455565 444443 444333 3344455678888774 343 554
No 299
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=71.59 E-value=0.63 Score=32.49 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=31.8
Q ss_pred eEEecCCCCHHHHH---HHhh-------CCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE--EcCeE
Q 034150 11 ACCPPLESCAFCLV---LFSS-------TNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF--IGGKH 71 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~-------~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if--i~g~~ 71 (102)
+++|..+|||.|.. .+.+ .+|... ++++...+- |.-+.-...+|+|+ .||.+
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va--~VDvt~npg-------LsGRF~vtaLptIYHvkDGeF 106 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVA--KVDVTTNPG-------LSGRFLVTALPTIYHVKDGEF 106 (248)
T ss_pred HHHhcCCCCccccchHHHHhccCCccCCCceeEE--EEEEEeccc-------cceeeEEEecceEEEeecccc
Confidence 45688999999998 3432 344445 666665432 33333345679886 47753
No 300
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=71.57 E-value=6.2 Score=25.18 Aligned_cols=52 Identities=21% Similarity=0.207 Sum_probs=31.6
Q ss_pred ecCCCCHHHHH---HHhhCCC---CCc-cceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEE
Q 034150 14 PPLESCAFCLV---LFSSTNN---KFL-KSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHI 72 (102)
Q Consensus 14 y~~~~Cp~C~~---~L~~~~i---~~~-~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~i 72 (102)
|+.+|-|-|-. +|.+.-- .|. ++.+++|.. ..+-+..+-...|.+ |.+++|+
T Consensus 30 FGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV-------~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 30 FGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV-------PDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred ecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh-------hhhhhhhcccCCceEEEEEcCceE
Confidence 99999999999 6665332 233 335666643 224445555666655 5666654
No 301
>PLN02880 tyrosine decarboxylase
Probab=71.56 E-value=30 Score=26.52 Aligned_cols=73 Identities=10% Similarity=-0.049 Sum_probs=47.8
Q ss_pred CceEEecCCCCHHHHH-HHhhCCCCCc-cceEEecc----CCChHHHHHHHHHHhCCCCcceEEE--cC-eEEechHHHH
Q 034150 9 NEACCPPLESCAFCLV-LFSSTNNKFL-KSLHVLIL----EGDGSKIQAALAEWTGQRTVPNVFI--GG-KHIGGCDTVV 79 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~-~L~~~~i~~~-~~~i~id~----~~~~~~~~~~l~~~~g~~~vP~ifi--~g-~~igg~~~l~ 79 (102)
.+.++|....+++|.. .+.-.|+... ...|..|. ..+...+++.+.+-......|.+++ -| ...|.+|++.
T Consensus 180 ~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~ 259 (490)
T PLN02880 180 EKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLL 259 (490)
T ss_pred CCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHH
Confidence 4689999999999999 7777787532 11556653 2355667777765444456777665 33 4567777775
Q ss_pred HH
Q 034150 80 EK 81 (102)
Q Consensus 80 ~~ 81 (102)
++
T Consensus 260 eI 261 (490)
T PLN02880 260 EL 261 (490)
T ss_pred HH
Confidence 54
No 302
>PRK15000 peroxidase; Provisional
Probab=70.09 E-value=7.5 Score=26.11 Aligned_cols=15 Identities=7% Similarity=-0.084 Sum_probs=10.4
Q ss_pred ceEEecC--CCCHHHHH
Q 034150 10 EACCPPL--ESCAFCLV 24 (102)
Q Consensus 10 ~vvvy~~--~~Cp~C~~ 24 (102)
.+++|.- .|||.|..
T Consensus 36 ~vvL~F~p~~~t~vC~~ 52 (200)
T PRK15000 36 TTVLFFWPMDFTFVCPS 52 (200)
T ss_pred EEEEEEECCCCCCCCHH
Confidence 3555444 48999999
No 303
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=67.20 E-value=3.7 Score=28.92 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=15.8
Q ss_pred eEEecCCCCHHHHH-------HHhhCCC
Q 034150 11 ACCPPLESCAFCLV-------LFSSTNN 31 (102)
Q Consensus 11 vvvy~~~~Cp~C~~-------~L~~~~i 31 (102)
|...+..+||+|.. .|.+.|-
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcCC
Confidence 44457789999998 6777763
No 304
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.53 E-value=6.4 Score=27.52 Aligned_cols=59 Identities=19% Similarity=0.119 Sum_probs=35.0
Q ss_pred eEEecCCCCHHHHH---HHhhCC-------CCCccceEEeccCCChHHHHHHHHHHhCCCCcceE--EEcCeEE
Q 034150 11 ACCPPLESCAFCLV---LFSSTN-------NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV--FIGGKHI 72 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~-------i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i--fi~g~~i 72 (102)
++-|-..|.|.|.+ .+.++. ..|- -+||...++ ...+-.+....+.+++|++ |-+|+-+
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFG--kvDiGrfpd-~a~kfris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFG--KVDIGRFPD-VAAKFRISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCccc--ceeeccCcC-hHHheeeccCcccccCCeEEEEccchhh
Confidence 44477789999999 444433 4455 667766654 2222223333567888876 5566543
No 305
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=66.50 E-value=16 Score=22.13 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=20.9
Q ss_pred CCHHHHH----HHhhCCCCCccceEEeccC
Q 034150 18 SCAFCLV----LFSSTNNKFLKSLHVLILE 43 (102)
Q Consensus 18 ~Cp~C~~----~L~~~~i~~~~~~i~id~~ 43 (102)
.|-.|.. +|.+.||+.. .+.+...
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk--~i~l~T~ 47 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGK--IIRLYTG 47 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCce--EEEEEec
Confidence 4888888 9999999999 8888874
No 306
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.20 E-value=9.4 Score=25.96 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=17.9
Q ss_pred hCCCCcceEEEcCeEEechHHH
Q 034150 57 TGQRTVPNVFIGGKHIGGCDTV 78 (102)
Q Consensus 57 ~g~~~vP~ifi~g~~igg~~~l 78 (102)
.|....|.+|++|..++|.-.+
T Consensus 211 ~gv~gTPt~~v~~~~~~g~~~~ 232 (244)
T COG1651 211 LGVNGTPTFIVNGKLVPGLPDL 232 (244)
T ss_pred cCCCcCCeEEECCeeecCCCCH
Confidence 5788999999999988776543
No 307
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=65.55 E-value=4.9 Score=22.15 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=11.6
Q ss_pred EEEcCeEEechHHHH
Q 034150 65 VFIGGKHIGGCDTVV 79 (102)
Q Consensus 65 ifi~g~~igg~~~l~ 79 (102)
||+||.++|=.++-.
T Consensus 1 VFlNG~~iG~~~~p~ 15 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPE 15 (63)
T ss_dssp EEETTEEEEEESSHH
T ss_pred CEECCEEEEEEcCHH
Confidence 799999999765533
No 308
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=64.61 E-value=3.8 Score=28.30 Aligned_cols=16 Identities=13% Similarity=-0.002 Sum_probs=14.6
Q ss_pred CceEEecCCCCHHHHH
Q 034150 9 NEACCPPLESCAFCLV 24 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~ 24 (102)
-.|.+|.-+-||+|.+
T Consensus 41 v~ItlyyEaLCPdc~~ 56 (220)
T KOG3160|consen 41 VNITLYYEALCPDCSK 56 (220)
T ss_pred eEEEEEEEecCccHHH
Confidence 4689999999999999
No 309
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=64.24 E-value=6.7 Score=21.77 Aligned_cols=32 Identities=28% Similarity=0.586 Sum_probs=18.5
Q ss_pred hCCCCcceEEEcCeEEechHHHHHHH-HCCCcHHHHHhc
Q 034150 57 TGQRTVPNVFIGGKHIGGCDTVVEKH-QGGKLVPLLRDA 94 (102)
Q Consensus 57 ~g~~~vP~ifi~g~~igg~~~l~~~~-~~g~L~~~l~~~ 94 (102)
.|...+|.| |||+|-+..-. +.-+|.++|+.+
T Consensus 13 pGa~~lP~I------IGGSDLi~h~~~knseleeWl~~e 45 (65)
T PF08599_consen 13 PGAGGLPHI------IGGSDLIAHHAGKNSELEEWLRQE 45 (65)
T ss_pred CCCCCCCee------ecchhhhhccccccccHHHHHHHH
Confidence 366778876 56655443322 223788877653
No 310
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=64.22 E-value=5.7 Score=25.77 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=13.6
Q ss_pred ceEEecCCCCHHHHH
Q 034150 10 EACCPPLESCAFCLV 24 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~ 24 (102)
+|.+|+.+.||+|-.
T Consensus 2 ~i~~~~D~~cp~c~~ 16 (193)
T cd03025 2 ELYYFIDPLCGWCYG 16 (193)
T ss_pred eEEEEECCCCchhhC
Confidence 578999999999988
No 311
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=64.20 E-value=9.1 Score=25.48 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=13.8
Q ss_pred CCCCHHHHH----------HHhhCCCCCccceEEecc
Q 034150 16 LESCAFCLV----------LFSSTNNKFLKSLHVLIL 42 (102)
Q Consensus 16 ~~~Cp~C~~----------~L~~~~i~~~~~~i~id~ 42 (102)
..+||.|.. -|.+.|+.+- -+..|.
T Consensus 46 ~~~~~~C~~e~~~l~~~~~~f~~~g~~vv--~IS~d~ 80 (199)
T PTZ00253 46 LDFTFVCPTEIIQFSDSVKRFNELNCEVL--ACSMDS 80 (199)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHcCCEEE--EEeCCC
Confidence 356777776 3444565554 555543
No 312
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=62.70 E-value=32 Score=21.06 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=24.7
Q ss_pred CCHHHHHHHhh------CCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE-EE
Q 034150 18 SCAFCLVLFSS------TNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV-FI 67 (102)
Q Consensus 18 ~Cp~C~~~L~~------~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i-fi 67 (102)
||.+|+..|.+ .+-.|- ..-.|... ++ -..+....+.+++|.+ ++
T Consensus 32 ~~~fc~~~l~~~~v~~~ln~~fv--~w~~dv~~--~e-g~~la~~l~~~~~P~~~~l 83 (116)
T cd02991 32 TDEFCRNTLCAPEVIEYINTRML--FWACSVAK--PE-GYRVSQALRERTYPFLAMI 83 (116)
T ss_pred HHHHHHHHcCCHHHHHHHHcCEE--EEEEecCC--hH-HHHHHHHhCCCCCCEEEEE
Confidence 68999882221 122344 45555542 22 2335555677899987 45
No 313
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=62.52 E-value=30 Score=25.19 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=33.9
Q ss_pred CCCHHHHH---HHhh---CCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHH
Q 034150 17 ESCAFCLV---LFSS---TNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 17 ~~Cp~C~~---~L~~---~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
-+|..|.+ +|+. .+..+. ++-||.+. ..++.....+. ...+|.|-+.| ..|.+++...+.
T Consensus 83 LGsG~~~Kt~~LL~aL~~~~~~~~--Y~plDIS~--~~L~~a~~~L~-~~~~p~l~v~~-l~gdy~~~l~~l 148 (319)
T TIGR03439 83 LGSGNLRKVGILLEALERQKKSVD--YYALDVSR--SELQRTLAELP-LGNFSHVRCAG-LLGTYDDGLAWL 148 (319)
T ss_pred ECCCchHHHHHHHHHHHhcCCCce--EEEEECCH--HHHHHHHHhhh-hccCCCeEEEE-EEecHHHHHhhc
Confidence 45888888 4443 444566 77777762 34444444432 23567766665 456666655443
No 314
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=61.78 E-value=9.6 Score=24.60 Aligned_cols=24 Identities=8% Similarity=-0.131 Sum_probs=17.4
Q ss_pred eEEecCCCCHHHHH-------HHhhCCCCCc
Q 034150 11 ACCPPLESCAFCLV-------LFSSTNNKFL 34 (102)
Q Consensus 11 vvvy~~~~Cp~C~~-------~L~~~~i~~~ 34 (102)
|.+|+...||||-- +....+++++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~ 31 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVR 31 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeE
Confidence 46899999999988 4445566554
No 315
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=60.66 E-value=6.2 Score=26.45 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=14.6
Q ss_pred CCceEEecCCCCHHHHH
Q 034150 8 VNEACCPPLESCAFCLV 24 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~ 24 (102)
...|+-|..-.||+|.+
T Consensus 38 ~~~VvEffdy~CphC~~ 54 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQ 54 (207)
T ss_pred CCeEEEEeCCCCccHHH
Confidence 34588899999999998
No 316
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=60.11 E-value=26 Score=21.45 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCCCcceE--EEcCeEEechHHH
Q 034150 47 SKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTV 78 (102)
Q Consensus 47 ~~~~~~l~~~~g~~~vP~i--fi~g~~igg~~~l 78 (102)
.+...+|..++|....|.+ |-+|+++|-...+
T Consensus 68 ~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 68 RAAERALAARFGVRRWPALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp HHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESS
T ss_pred chhHHHHHHHhCCccCCeEEEEECCEEEEEecCe
Confidence 4457789999999999976 5699999865443
No 317
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=58.50 E-value=17 Score=18.24 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=18.3
Q ss_pred EEEcCeEEec--hHHHHHHHHCCCcHH
Q 034150 65 VFIGGKHIGG--CDTVVEKHQGGKLVP 89 (102)
Q Consensus 65 ifi~g~~igg--~~~l~~~~~~g~L~~ 89 (102)
+..||+..|- .++|.++.++|++..
T Consensus 4 ~~~~g~~~GP~s~~el~~l~~~g~i~~ 30 (45)
T PF14237_consen 4 YARNGQQQGPFSLEELRQLISSGEIDP 30 (45)
T ss_pred EeCCCeEECCcCHHHHHHHHHcCCCCC
Confidence 3457888884 477888888888753
No 318
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=57.46 E-value=18 Score=25.55 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=11.8
Q ss_pred ceEEe--cCCCCHHHHH
Q 034150 10 EACCP--PLESCAFCLV 24 (102)
Q Consensus 10 ~vvvy--~~~~Cp~C~~ 24 (102)
.+++| -.+|||.|..
T Consensus 100 ~vVL~FyPa~ftpvCt~ 116 (261)
T PTZ00137 100 YGLLVFYPLDFTFVCPS 116 (261)
T ss_pred eEEEEEECCCCCCCCHH
Confidence 56665 4689999999
No 319
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=57.39 E-value=75 Score=24.72 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=45.5
Q ss_pred CceEEecCCCCHHHHH-HHhhCCC---CCccceEEeccC--CChHHHHHHHHHHhCCCCcceEEE--cCe-EEechHHHH
Q 034150 9 NEACCPPLESCAFCLV-LFSSTNN---KFLKSLHVLILE--GDGSKIQAALAEWTGQRTVPNVFI--GGK-HIGGCDTVV 79 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~-~L~~~~i---~~~~~~i~id~~--~~~~~~~~~l~~~~g~~~vP~ifi--~g~-~igg~~~l~ 79 (102)
.+.++|+.+...+|.. ...-.|+ ... .+.+|.+ -+...+++.+.+.....+.|..++ -|. ..|..|++.
T Consensus 208 ~~~~v~~S~~~H~S~~kaa~~lglg~~~v~--~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~ 285 (522)
T TIGR03799 208 DGLAILVSERGHYSLGKAADVLGIGRDNLI--AIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLD 285 (522)
T ss_pred CceEEEECCCchHHHHHHHHHcCCCcccEE--EEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHH
Confidence 4678999999999988 6666676 344 5666543 344666666654433455676655 443 567777765
Q ss_pred HHH
Q 034150 80 EKH 82 (102)
Q Consensus 80 ~~~ 82 (102)
++.
T Consensus 286 eIa 288 (522)
T TIGR03799 286 EMA 288 (522)
T ss_pred HHH
Confidence 543
No 320
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=56.75 E-value=29 Score=23.12 Aligned_cols=15 Identities=7% Similarity=-0.124 Sum_probs=11.0
Q ss_pred ceEEe-c-CCCCHHHHH
Q 034150 10 EACCP-P-LESCAFCLV 24 (102)
Q Consensus 10 ~vvvy-~-~~~Cp~C~~ 24 (102)
.+++| . ..|||.|..
T Consensus 33 ~vvL~F~P~~~~p~C~~ 49 (187)
T PRK10382 33 WSVFFFYPADFTFVCPT 49 (187)
T ss_pred eEEEEEECCCCCCcCHH
Confidence 35554 3 689999999
No 321
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=55.53 E-value=19 Score=22.33 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=19.8
Q ss_pred hCCCCcceEEEcCeE-EechHHHHHHH
Q 034150 57 TGQRTVPNVFIGGKH-IGGCDTVVEKH 82 (102)
Q Consensus 57 ~g~~~vP~ifi~g~~-igg~~~l~~~~ 82 (102)
.|...+|.|++|+++ |.|-.++....
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~A~ 105 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVARAL 105 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHHHH
Confidence 478999999999985 56877766543
No 322
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.81 E-value=6.3 Score=28.31 Aligned_cols=10 Identities=20% Similarity=0.830 Sum_probs=8.4
Q ss_pred cCCCCHHHHH
Q 034150 15 PLESCAFCLV 24 (102)
Q Consensus 15 ~~~~Cp~C~~ 24 (102)
-+++||||+.
T Consensus 269 KkqtCPYCKe 278 (328)
T KOG1734|consen 269 KKQTCPYCKE 278 (328)
T ss_pred CCCCCchHHH
Confidence 3578999999
No 323
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=53.75 E-value=54 Score=21.35 Aligned_cols=45 Identities=9% Similarity=0.083 Sum_probs=23.0
Q ss_pred eEEecCCCCH-HHHH----------HHhhCCCCCccceEEeccCCChH-HHHHHHHH
Q 034150 11 ACCPPLESCA-FCLV----------LFSSTNNKFLKSLHVLILEGDGS-KIQAALAE 55 (102)
Q Consensus 11 vvvy~~~~Cp-~C~~----------~L~~~~i~~~~~~i~id~~~~~~-~~~~~l~~ 55 (102)
++-|+-+.|| -|.. -|.+.+.+++...|.+|...|.+ .++++.+.
T Consensus 56 lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~ 112 (174)
T PF02630_consen 56 LVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKK 112 (174)
T ss_dssp EEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHC
T ss_pred EEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHh
Confidence 4557888897 4775 34444555662255555443333 34444443
No 324
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=53.41 E-value=16 Score=24.47 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=41.0
Q ss_pred CCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHHh-CCCCcceEEE---cC---eEEe--chHHHHHHHHCC
Q 034150 18 SCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWT-GQRTVPNVFI---GG---KHIG--GCDTVVEKHQGG 85 (102)
Q Consensus 18 ~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~-g~~~vP~ifi---~g---~~ig--g~~~l~~~~~~g 85 (102)
-||+|.. .-++..-.|.- ..++.......+..++|-.+| |..+--+-.- -+ .++| |.++|.++ .+
T Consensus 51 lCPwCIAdG~AA~kfdg~F~d-~~~~~~~~~~~~~~~El~~RTPGy~sWQqe~Wl~hC~D~CaFlG~vg~~El~~~--~~ 127 (176)
T PF03691_consen 51 LCPWCIADGSAAKKFDGEFQD-DADLEGVGIDPEKLEELFHRTPGYSSWQQEYWLAHCDDYCAFLGYVGWEELKAM--PE 127 (176)
T ss_pred cCHhHhcCcHhHHhcCeEeec-chhcccccCCHHHHHHHHhcCCCCcccccchhhhhcCCHHHhcCCCCHHHHHHH--HH
Confidence 4999999 55666655531 222332212367777777665 5444332211 11 2343 77888877 45
Q ss_pred CcHHHHHhcC
Q 034150 86 KLVPLLRDAG 95 (102)
Q Consensus 86 ~L~~~l~~~g 95 (102)
.|.+++.+..
T Consensus 128 ~~~~~~~~~~ 137 (176)
T PF03691_consen 128 ELEEVLEDYE 137 (176)
T ss_pred HHHHHHHHHh
Confidence 6777766553
No 325
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=52.45 E-value=71 Score=21.66 Aligned_cols=27 Identities=11% Similarity=-0.196 Sum_probs=18.7
Q ss_pred EecCCCCHHHHHHHhhCCCCCccceEEec
Q 034150 13 CPPLESCAFCLVLFSSTNNKFLKSLHVLI 41 (102)
Q Consensus 13 vy~~~~Cp~C~~~L~~~~i~~~~~~i~id 41 (102)
++-.|..|.-+.+|++.|++|+ .+.-|
T Consensus 5 LiLAS~SPrR~elL~~~gi~f~--~~~~~ 31 (193)
T COG0424 5 LILASSSPRRRELLEQLGIPFE--VIPSD 31 (193)
T ss_pred EEEecCCHHHHHHHHHCCCCeE--EecCC
Confidence 3444556776669999999998 55333
No 326
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=51.99 E-value=17 Score=24.53 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCcceE-EEcCeEEechHHHHHHHH
Q 034150 49 IQAALAEWTGQRTVPNV-FIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 49 ~~~~l~~~~g~~~vP~i-fi~g~~igg~~~l~~~~~ 83 (102)
+|..|.+.-+.++||-| ||+++-.-+..++-++..
T Consensus 101 ~rh~l~~~~~~g~vP~IkFV~DK~~~~l~e~d~ll~ 136 (207)
T KOG4700|consen 101 IRHRLEESIGIGTVPEIKFVGDKALLMLQEMDKLLR 136 (207)
T ss_pred HHHHHHHHhccccCCceEEecchHHHHHHHHHHHHH
Confidence 44455555577788755 888875555544444333
No 327
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=49.22 E-value=25 Score=21.83 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=19.0
Q ss_pred hCCCCcceEEEcCeEE-echHHHHHH
Q 034150 57 TGQRTVPNVFIGGKHI-GGCDTVVEK 81 (102)
Q Consensus 57 ~g~~~vP~ifi~g~~i-gg~~~l~~~ 81 (102)
.|..++|.|++|+++| .|-.++...
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~DV~~A 105 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETDVARA 105 (113)
T ss_pred cCCccCCEEEEcCCeEEecCccHHHH
Confidence 4889999999999864 676665543
No 328
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=48.49 E-value=27 Score=23.29 Aligned_cols=25 Identities=4% Similarity=-0.150 Sum_probs=18.5
Q ss_pred ceEEecCCCCHHHHH-------HHhhCCCCCc
Q 034150 10 EACCPPLESCAFCLV-------LFSSTNNKFL 34 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~-------~L~~~~i~~~ 34 (102)
+|.+|+..-||||-- +++..+++.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~ 33 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDIT 33 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEE
Confidence 578999999999987 4445565544
No 329
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=45.21 E-value=39 Score=18.83 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=16.4
Q ss_pred CCcceEEEcCeEEechH--HHHHHHH
Q 034150 60 RTVPNVFIGGKHIGGCD--TVVEKHQ 83 (102)
Q Consensus 60 ~~vP~ifi~g~~igg~~--~l~~~~~ 83 (102)
..-|.+.|+++.++..+ .+.++.+
T Consensus 45 ~~gP~v~V~~~~~~~~t~~~i~~~~~ 70 (72)
T cd03082 45 ERAPAALVGQRPVDGATPAAVAAAVE 70 (72)
T ss_pred CCCCeEEECCEEeCCcCHHHHHHHHh
Confidence 45699999999887653 3444443
No 330
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=44.66 E-value=83 Score=20.18 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=37.7
Q ss_pred ccCCceEEecCCCCHHHHH---HHhhC--CCCCccceEEeccCCChHHHHHHHHHHhCCC-Ccc--eEE-EcCeEEechH
Q 034150 6 VFVNEACCPPLESCAFCLV---LFSST--NNKFLKSLHVLILEGDGSKIQAALAEWTGQR-TVP--NVF-IGGKHIGGCD 76 (102)
Q Consensus 6 i~~~~vvvy~~~~Cp~C~~---~L~~~--~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~-~vP--~if-i~g~~igg~~ 76 (102)
++....+|+....||+|.. +|.++ +-.+. +..+.... -+. +.+..|.. .-+ .++ -+|+..-|++
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~--f~~~q~e~----g~~-~l~~~~l~~~~~~s~~~~~~g~~~~~sd 77 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIR--FAALQSEP----GQA-LLEAAGLDPEDVDSVLLVEAGQLLVGSD 77 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccCCcEE--EEeccCch----hhh-HHhhcCCChhhhheeeEecCCceEeccH
Confidence 3444567777788999999 66554 33455 44554321 122 33333321 112 233 3667777777
Q ss_pred HHHHHH
Q 034150 77 TVVEKH 82 (102)
Q Consensus 77 ~l~~~~ 82 (102)
-+.+..
T Consensus 78 A~~~i~ 83 (137)
T COG3011 78 AAIRIL 83 (137)
T ss_pred HHHHHH
Confidence 665543
No 331
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=43.91 E-value=19 Score=21.90 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=12.2
Q ss_pred CcceEEEcCeEEec
Q 034150 61 TVPNVFIGGKHIGG 74 (102)
Q Consensus 61 ~vP~ifi~g~~igg 74 (102)
-.|.+|.||+.||-
T Consensus 81 CTplvF~n~~LvgW 94 (102)
T PF11399_consen 81 CTPLVFKNGKLVGW 94 (102)
T ss_pred eEEEEEECCEEEEE
Confidence 46999999999984
No 332
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=43.35 E-value=12 Score=18.90 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCCcceEEEcC
Q 034150 49 IQAALAEWTGQRTVPNVFIGG 69 (102)
Q Consensus 49 ~~~~l~~~~g~~~vP~ifi~g 69 (102)
+..-+....|+...|.|+..|
T Consensus 4 LEsviWHilGY~AmPvIil~G 24 (42)
T TIGR02808 4 LESTIWHVLGYGAMPFIILSG 24 (42)
T ss_pred HHHHHHHHhcccccchHHhhh
Confidence 445567778999999999887
No 333
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=39.49 E-value=24 Score=21.50 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=7.7
Q ss_pred ceEEecCC---CCHHHHH
Q 034150 10 EACCPPLE---SCAFCLV 24 (102)
Q Consensus 10 ~vvvy~~~---~Cp~C~~ 24 (102)
.+++|+.. .|+||..
T Consensus 7 ~~~~~t~~Cnl~C~yC~~ 24 (139)
T PF13353_consen 7 RVVLFTNGCNLRCKYCFN 24 (139)
T ss_dssp EEEEEEC--SB--TT-TT
T ss_pred EEEEEcCcccccCcCcCC
Confidence 57888654 3778854
No 334
>PLN02907 glutamate-tRNA ligase
Probab=39.04 E-value=1.5e+02 Score=24.19 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=38.1
Q ss_pred eEEecCC-CCHHHHH-HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE-cCeEEechHHHHHHHHC
Q 034150 11 ACCPPLE-SCAFCLV-LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 11 vvvy~~~-~Cp~C~~-~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~l~~~~~~ 84 (102)
+.+|..+ .||+... +|+..|++|+ .++. ....++|++.. +|..+-++..+..+...
T Consensus 3 ~kLy~~~~S~~~~v~~~L~~lgv~~e--~~~~----------------~p~GkVPvLv~ddG~~L~ES~AIl~YLa~ 61 (722)
T PLN02907 3 AKLSFPPDSPPLAVIAAAKVAGVPLT--IDPS----------------LKSGSAPTLLFSSGEKLTGTNVLLRYIAR 61 (722)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCcE--Eeec----------------CCCCCCcEEEECCCCEEECHHHHHHHHHH
Confidence 4566665 4766655 8889999998 5431 13568999976 77777777777665543
No 335
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=38.93 E-value=33 Score=24.22 Aligned_cols=72 Identities=8% Similarity=-0.046 Sum_probs=37.1
Q ss_pred HHhhCCCCCcc------ceEEeccCCChHHHHHHHHHHhCCCCcc-----eEEEcCeEEechHHHH---HHHHCCCcHHH
Q 034150 25 LFSSTNNKFLK------SLHVLILEGDGSKIQAALAEWTGQRTVP-----NVFIGGKHIGGCDTVV---EKHQGGKLVPL 90 (102)
Q Consensus 25 ~L~~~~i~~~~------~~i~id~~~~~~~~~~~l~~~~g~~~vP-----~ifi~g~~igg~~~l~---~~~~~g~L~~~ 90 (102)
.|++.||+|+. ..+.++.. +-.+.+..|... |-+.-. .+|-.+.++-+..+.. .+..+|+|.+.
T Consensus 38 ~L~~~gI~y~~~~~~~G~tI~Vp~~-~~~~Ar~~La~~-GLP~~g~~~~~~lFd~~~l~~t~te~~qki~y~regELarT 115 (249)
T PRK15348 38 LLMQHHIDAEKKQEEDGVTLRVEQS-QFINAVELLRLN-GYPHRQFTTADKMFPANQLVVSPQEEQQKINFLKEQRIEGM 115 (249)
T ss_pred HHHHcCCCceEeeCCCCeEEEecHH-HHHHHHHHHHHc-CCCCCCCccHHHhCCccccccChhHHHHHHHHHHHHHHHHH
Confidence 88999999962 12233222 123344455542 322211 1444344433333333 35668999999
Q ss_pred HHhcCchh
Q 034150 91 LRDAGALA 98 (102)
Q Consensus 91 l~~~g~~~ 98 (102)
|....-+.
T Consensus 116 I~~idgV~ 123 (249)
T PRK15348 116 LSQMEGVI 123 (249)
T ss_pred HHhCCCee
Confidence 97765443
No 336
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=38.25 E-value=59 Score=19.95 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=40.3
Q ss_pred CCceEEecCCCCHHHHH--HHhhCCCCCccceEEeccCCChHHHHHHHH--H-H-hCCCCcceEEEcCeEEechHHHHHH
Q 034150 8 VNEACCPPLESCAFCLV--LFSSTNNKFLKSLHVLILEGDGSKIQAALA--E-W-TGQRTVPNVFIGGKHIGGCDTVVEK 81 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~--~L~~~~i~~~~~~i~id~~~~~~~~~~~l~--~-~-~g~~~vP~ifi~g~~igg~~~l~~~ 81 (102)
..+|++.-+-.|+|..+ ..++.|...-. +++.+..+. ...+. . . ....++|.++|..+ ..+.|++.
T Consensus 34 ~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avI-I~n~~~~~~----~~~~~m~~~~~~~~i~IP~v~Is~~---dG~~L~~~ 105 (118)
T cd02127 34 NGNIALIERGGCSFLTKAINAQKAGALAVI-ITDVNNDSD----EYYVEMIQDDSSRRADIPAAFLLGK---NGYMIRKT 105 (118)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHCCCcEEE-EEECCCCcc----ccceEecCCCCCCCceEEEEEecHH---HHHHHHHH
Confidence 46788888999999999 66777876541 333222111 11111 0 0 12347899998764 23445555
Q ss_pred HHCCC
Q 034150 82 HQGGK 86 (102)
Q Consensus 82 ~~~g~ 86 (102)
.+.|.
T Consensus 106 l~~g~ 110 (118)
T cd02127 106 LERLG 110 (118)
T ss_pred HHcCC
Confidence 55554
No 337
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.68 E-value=1e+02 Score=21.03 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=25.7
Q ss_pred HHHHHHHHHH------hCCCCcceEEEcCeEEechHHHHHHH
Q 034150 47 SKIQAALAEW------TGQRTVPNVFIGGKHIGGCDTVVEKH 82 (102)
Q Consensus 47 ~~~~~~l~~~------~g~~~vP~ifi~g~~igg~~~l~~~~ 82 (102)
++.++.++.. -|.-..|++|++++..-|.|.|-.+.
T Consensus 156 ~eik~~l~a~~~~a~srGvfGaPtfivg~q~fwGqDRL~~le 197 (203)
T COG3917 156 DEIKARLKANTAEAVSRGVFGAPTFIVGDQLFWGQDRLYQLE 197 (203)
T ss_pred HHHHHHHHhhHHHHHhcCccCCCeEEECCeeeechhHHHHHH
Confidence 5556666542 26667899999999998998875443
No 338
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=36.53 E-value=80 Score=23.34 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCCCcceEEEcCeEEec
Q 034150 47 SKIQAALAEWTGQRTVPNVFIGGKHIGG 74 (102)
Q Consensus 47 ~~~~~~l~~~~g~~~vP~ifi~g~~igg 74 (102)
..+++.+++ ..+|.+.+++.+...
T Consensus 333 ~~lk~~l~e----~GIP~L~iE~D~~~~ 356 (377)
T TIGR03190 333 PDLKRHLEA----NGIPTLFLEFDITNP 356 (377)
T ss_pred HHHHHHHHH----CCCCEEEEecCCCCc
Confidence 344555543 468999998877643
No 339
>PLN02263 serine decarboxylase
Probab=36.25 E-value=1.7e+02 Score=22.60 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=43.0
Q ss_pred EEecCCCCHHHHH-HHhhCCCCCccceEEeccC--CChHHHHHHHHHHhCCCCcceEEE---cCeEEechHHHHHHH
Q 034150 12 CCPPLESCAFCLV-LFSSTNNKFLKSLHVLILE--GDGSKIQAALAEWTGQRTVPNVFI---GGKHIGGCDTVVEKH 82 (102)
Q Consensus 12 vvy~~~~Cp~C~~-~L~~~~i~~~~~~i~id~~--~~~~~~~~~l~~~~g~~~vP~ifi---~g~~igg~~~l~~~~ 82 (102)
++|......+|.. ...=.|++.. .|.+|.. .|...+++.+.+- ...|.+++ +-...|..|++.++.
T Consensus 180 vvy~S~~aH~Sv~KAa~llgi~~~--~Vp~d~~g~mD~~aL~~aI~~d---~~~P~iVvataGTT~~GAiDpi~eIa 251 (470)
T PLN02263 180 ILYASRESHYSVFKAARMYRMECV--KVDTLVSGEIDCADFKAKLLAN---KDKPAIINVNIGTTVKGAVDDLDLVI 251 (470)
T ss_pred EEEEcCCccHHHHHHHHhcCCcce--EeccCCCCcCcHHHHHHHHHhC---CCCcEEEEEEecCCCCcCCCCHHHHH
Confidence 6777788899988 6666788777 6666543 3445555555432 23577764 556778888875543
No 340
>PRK02141 Maf-like protein; Reviewed
Probab=35.29 E-value=1.1e+02 Score=20.88 Aligned_cols=37 Identities=8% Similarity=-0.084 Sum_probs=23.3
Q ss_pred CCcccccCCceEEecCCCCHHHHHHHhhCCCCCccceEEec
Q 034150 1 MNECAVFVNEACCPPLESCAFCLVLFSSTNNKFLKSLHVLI 41 (102)
Q Consensus 1 m~e~~i~~~~vvvy~~~~Cp~C~~~L~~~~i~~~~~~i~id 41 (102)
|.-+.-...++++=|. .|.-+.+|++.|++|+ .+.-+
T Consensus 1 ~~~~~~~~~~iILAS~--SprR~elL~~~G~~f~--v~~~~ 37 (207)
T PRK02141 1 MPDTVCRPPRLILASS--SRYRRELLERLRLPFD--VVSPD 37 (207)
T ss_pred CCCccCCCCCEEEeCC--CHHHHHHHHHCCCCeE--EEcCC
Confidence 3333334556666554 4665559999999998 55433
No 341
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=35.14 E-value=92 Score=22.81 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=40.9
Q ss_pred CCceEEecC---CCCHHHHH-------------------HHhhCCCCCc-cceEEeccCCCh--HHHHHHHHHHhCCCCc
Q 034150 8 VNEACCPPL---ESCAFCLV-------------------LFSSTNNKFL-KSLHVLILEGDG--SKIQAALAEWTGQRTV 62 (102)
Q Consensus 8 ~~~vvvy~~---~~Cp~C~~-------------------~L~~~~i~~~-~~~i~id~~~~~--~~~~~~l~~~~g~~~v 62 (102)
...|++.+. .+|.||.. .+.+.|+.|. .+-+|.|.-+|+ ..+.+.++.+- ..-
T Consensus 111 TATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK--~k~ 188 (360)
T KOG2672|consen 111 TATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIK--EKA 188 (360)
T ss_pred eEEEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHH--hhC
Confidence 345666665 36999975 7788999986 223444433332 23333333321 134
Q ss_pred ceEEEc---CeEEechHHHHHHHHCC
Q 034150 63 PNVFIG---GKHIGGCDTVVEKHQGG 85 (102)
Q Consensus 63 P~ifi~---g~~igg~~~l~~~~~~g 85 (102)
|.|+|. ..|-|..+-+..+.++|
T Consensus 189 p~ilvE~L~pDF~Gd~~~Ve~va~SG 214 (360)
T KOG2672|consen 189 PEILVECLTPDFRGDLKAVEKVAKSG 214 (360)
T ss_pred cccchhhcCccccCchHHHHHHHhcC
Confidence 666653 35666655554444444
No 342
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=34.87 E-value=24 Score=24.04 Aligned_cols=80 Identities=11% Similarity=0.063 Sum_probs=41.9
Q ss_pred ceEEecC-C----CCHHHHH--HHh-hCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeE--EechHHHH
Q 034150 10 EACCPPL-E----SCAFCLV--LFS-STNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKH--IGGCDTVV 79 (102)
Q Consensus 10 ~vvvy~~-~----~Cp~C~~--~L~-~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~--igg~~~l~ 79 (102)
+-.||.+ . +|++|.. ..+ +.+.++. .+.. .++.+.++....... =+++-||+. .-+..+|.
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~----~~~~----~~I~~~i~~~~~~~~-~V~lTGGEP~~~~~l~~Ll 92 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGT----PMSA----DEILADIKSLGYKAR-GVSLTGGEPLLQPNLLELL 92 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCC----ccCH----HHHHHHHHhcCCCcc-eEEEeCCcCCCcccHHHHH
Confidence 4456655 2 4778876 211 2234444 2222 445555655322222 345678886 33677777
Q ss_pred HHHHCCCcHHHHHhcCchh
Q 034150 80 EKHQGGKLVPLLRDAGALA 98 (102)
Q Consensus 80 ~~~~~g~L~~~l~~~g~~~ 98 (102)
+..+...++..|+..|.++
T Consensus 93 ~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 93 ELLKRLGFRIALETNGTIP 111 (212)
T ss_pred HHHHhCCceEEecCCCCcc
Confidence 7766655555555555544
No 343
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=34.27 E-value=8.3 Score=19.76 Aligned_cols=6 Identities=50% Similarity=1.370 Sum_probs=3.3
Q ss_pred CHHHHH
Q 034150 19 CAFCLV 24 (102)
Q Consensus 19 Cp~C~~ 24 (102)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 566653
No 344
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.08 E-value=49 Score=27.33 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=29.2
Q ss_pred cCCceEEecCCCCHHHHHHHhhCCC-CCccceEEeccCCChHHHHHHHHHHhCC
Q 034150 7 FVNEACCPPLESCAFCLVLFSSTNN-KFLKSLHVLILEGDGSKIQAALAEWTGQ 59 (102)
Q Consensus 7 ~~~~vvvy~~~~Cp~C~~~L~~~~i-~~~~~~i~id~~~~~~~~~~~l~~~~g~ 59 (102)
.+....++++.|||.- ..+ +|. .|-+|.+.. .++|+.|.+++|.
T Consensus 1053 ~~~sL~i~vRRW~Ps~------~e~~pFQ--EV~Ld~~~~-~E~Re~LS~ISgI 1097 (1203)
T KOG4598|consen 1053 PGESLPIMVRRWRPST------VEVNPFQ--EVLLDANAE-VEFREALSKISGI 1097 (1203)
T ss_pred CCccchhhheeccccc------eecCCce--eEEecCcch-HHHHHHHHHhcCC
Confidence 3445778888898842 222 466 666776543 7788888877664
No 345
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.77 E-value=1.9e+02 Score=21.21 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=38.0
Q ss_pred ceEEecCCC-----CHHHHH--HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE-cCeEEechHHHHHH
Q 034150 10 EACCPPLES-----CAFCLV--LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEK 81 (102)
Q Consensus 10 ~vvvy~~~~-----Cp~C~~--~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~l~~~ 81 (102)
.+.+|+.++ |+.|.. ++.+...... -+++...+. +++...+|.+.. +|..|+|++++...
T Consensus 3 ~L~~~~~~~glptid~~sL~~l~y~kl~~~~l--~v~~ssN~~----------~s~sg~LP~l~~~ng~~va~~~~iv~~ 70 (313)
T KOG3028|consen 3 ELHIWSGGYGLPTIDPDSLAALIYLKLAGAPL--KVVVSSNPW----------RSPSGKLPYLITDNGTKVAGPVKIVQF 70 (313)
T ss_pred eEEEecCCCCCCCcChhHHHHHHHHHHhCCCc--eeEeecCCC----------CCCCCCCCeEEecCCceeccHHHHHHH
Confidence 345565543 999999 4444433333 223332221 345567999866 45999999988776
Q ss_pred HHC
Q 034150 82 HQG 84 (102)
Q Consensus 82 ~~~ 84 (102)
.+.
T Consensus 71 L~k 73 (313)
T KOG3028|consen 71 LKK 73 (313)
T ss_pred HHH
Confidence 554
No 346
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=33.33 E-value=5.8 Score=26.46 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=36.1
Q ss_pred HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCCCcHHHH
Q 034150 25 LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVPLL 91 (102)
Q Consensus 25 ~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g~L~~~l 91 (102)
+|++.||+|. ++........+++.++. .=|+-++|.=.+|++=+...-.+=+.|...|
T Consensus 81 ilq~RnI~~~----~i~asrYa~~l~~~~rt-----~EPqrliD~Livga~IEARScERfa~Laphl 138 (203)
T COG4445 81 ILQARNIPYV----PIPASRYAKGLLAAVRT-----HEPQRLIDKLIVGAYIEARSCERFAALAPHL 138 (203)
T ss_pred HHHHcCCccc----cCCccHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHhhhhHHHHHhhcccc
Confidence 7788888888 66654333444444443 5588888887788876665555444444333
No 347
>PF15616 TerY-C: TerY-C metal binding domain
Probab=33.32 E-value=11 Score=23.92 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=9.3
Q ss_pred EecCCCCHHHHH
Q 034150 13 CPPLESCAFCLV 24 (102)
Q Consensus 13 vy~~~~Cp~C~~ 24 (102)
+.+.|+||+|-.
T Consensus 74 L~g~PgCP~CGn 85 (131)
T PF15616_consen 74 LIGAPGCPHCGN 85 (131)
T ss_pred hcCCCCCCCCcC
Confidence 456689999976
No 348
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=32.90 E-value=38 Score=23.34 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHCCCcHHHHHhcCchhhhcC
Q 034150 78 VVEKHQGGKLVPLLRDAGALALADK 102 (102)
Q Consensus 78 l~~~~~~g~L~~~l~~~g~~~~~~~ 102 (102)
+.++.++|++.++++++|+-..+.|
T Consensus 243 l~~~~~sG~~~~i~~ky~~~~~~~~ 267 (275)
T TIGR02995 243 LAKLKESGEFAKIIAPYGFSAKAAM 267 (275)
T ss_pred HHHHHhChHHHHHHHHhCCChhhcC
Confidence 4568889999999999998776543
No 349
>TIGR00778 ahpD_dom alkylhydroperoxidase AhpD family core domain. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity.
Probab=32.85 E-value=46 Score=16.58 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=13.4
Q ss_pred CCCHHHHH----HHhhCCCCCc
Q 034150 17 ESCAFCLV----LFSSTNNKFL 34 (102)
Q Consensus 17 ~~Cp~C~~----~L~~~~i~~~ 34 (102)
..|.||.. .+.+.|+.-+
T Consensus 19 ~~C~yc~~~H~~~a~~~G~~~~ 40 (50)
T TIGR00778 19 NGCGYCLDAHTKLARKAGVTAE 40 (50)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 57999998 5566777655
No 350
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=32.80 E-value=29 Score=21.98 Aligned_cols=26 Identities=12% Similarity=0.154 Sum_probs=19.0
Q ss_pred CceEEecC-CCCHHHHHHHhhCCCCCc
Q 034150 9 NEACCPPL-ESCAFCLVLFSSTNNKFL 34 (102)
Q Consensus 9 ~~vvvy~~-~~Cp~C~~~L~~~~i~~~ 34 (102)
..|.+||. +-|+.|..++++....|-
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~~~p 123 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKKDFP 123 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHHHCC
Confidence 67999987 679999995555554444
No 351
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=32.62 E-value=93 Score=17.23 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCCc-----------ceEEEcCeEEec
Q 034150 47 SKIQAALAEWTGQRTV-----------PNVFIGGKHIGG 74 (102)
Q Consensus 47 ~~~~~~l~~~~g~~~v-----------P~ifi~g~~igg 74 (102)
..++.+|++..|...+ --|++++++||-
T Consensus 3 ~klq~yLr~~f~n~~i~v~~rpk~~dsaEV~~g~EfiGv 41 (63)
T PF11324_consen 3 KKLQAYLRRTFGNPGITVKARPKKDDSAEVYIGDEFIGV 41 (63)
T ss_pred HHHHHHHHHHhCCCceEEEcCCCCCCceEEEeCCEEEEE
Confidence 4567788877654322 257899999985
No 352
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=32.41 E-value=13 Score=18.79 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCCcceEEEcC
Q 034150 49 IQAALAEWTGQRTVPNVFIGG 69 (102)
Q Consensus 49 ~~~~l~~~~g~~~vP~ifi~g 69 (102)
+..-+....|+...|.||..|
T Consensus 4 lEsviWhvLGY~AmPvI~L~G 24 (42)
T PF09574_consen 4 LESVIWHVLGYAAMPVIILSG 24 (42)
T ss_pred HHHHHHHHhccccchHHHHhh
Confidence 445567778999999998877
No 353
>PF09034 TRADD_N: TRADD, N-terminal domain; InterPro: IPR009095 TRADD is a signalling adaptor protein involved in tumour necrosis factor-receptor I (TNFR1)-associated apoptosis and cell survival. The decision between apoptosis and cell survival involves the interplay between two sequential signalling complexes. The plasma membrane-bound complex I is comprised of TNFR1, TRADD, the kinase RIP1, and TRAF2, which together mediate the activation of NF-kappaB. Subsequently, complex II is formed in the cytoplasm, where TRADD and RIP1 associate with FADD and caspase-8. If NF-kappaB is activated by complex I, then complex II will associate with the caspase-8 inhibitor FLIP(L) and the cell survives, while the failure to activate NF-kappaB leads to apoptosis []. The TRADD C-terminal death domain is responsible for its association with TNFR1, and with the death-domain proteins FADD and RIP1, which promote apoptosis. The TRADD N-terminal domain binds TRAF2 and promotes TRAF2 recruitment to TNFR1, thereby mediating the activation of NK-kappaB and JNK/AP1, which promote cell survival []. The N-terminal TRADD domain is composed of an alpha-beta sandwich, where the beta strands form an antiparallel beta-sheet.; GO: 0004871 signal transducer activity, 0006917 induction of apoptosis, 0043123 positive regulation of I-kappaB kinase/NF-kappaB cascade, 0005737 cytoplasm; PDB: 1F3V_A 1F2H_A.
Probab=32.33 E-value=54 Score=20.20 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=27.5
Q ss_pred CcceEEEcCeEEe--chHHHHHHHHCCCcHHHHHhc
Q 034150 61 TVPNVFIGGKHIG--GCDTVVEKHQGGKLVPLLRDA 94 (102)
Q Consensus 61 ~vP~ifi~g~~ig--g~~~l~~~~~~g~L~~~l~~~ 94 (102)
+=|++.+.=+|.| -+..+.+.+.+|.|+..|+..
T Consensus 17 sdpqLiVqlkF~~~~~C~rFL~sYreGalr~~Lq~~ 52 (111)
T PF09034_consen 17 SDPQLIVQLKFCGREPCRRFLRSYREGALRQSLQQH 52 (111)
T ss_dssp ETTCEEEEEEEESHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeeEEEEEEcCchhHHHHHHHHhccHHHHHHHHH
Confidence 4488888778876 678899999999999988753
No 354
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=32.06 E-value=2.7e+02 Score=22.35 Aligned_cols=81 Identities=11% Similarity=-0.011 Sum_probs=47.6
Q ss_pred EEecCCCCHHHHH-HHhhCCCCCc-cceEEeccC--CChHHHHHHHHHHhCCCCcc--eEEEcC-eEEechHHHHHHHHC
Q 034150 12 CCPPLESCAFCLV-LFSSTNNKFL-KSLHVLILE--GDGSKIQAALAEWTGQRTVP--NVFIGG-KHIGGCDTVVEKHQG 84 (102)
Q Consensus 12 vvy~~~~Cp~C~~-~L~~~~i~~~-~~~i~id~~--~~~~~~~~~l~~~~g~~~vP--~ifi~g-~~igg~~~l~~~~~~ 84 (102)
++|.....+||.. ...=.|+... ...|.+|.+ .+...+++.+.+.......| +|-.-| .-.|..|.+.++.
T Consensus 224 ~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~-- 301 (608)
T TIGR03811 224 KWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIV-- 301 (608)
T ss_pred EEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHH--
Confidence 7888888999999 6666677432 114455543 45567777776543333444 232344 4667778776664
Q ss_pred CCcHHHHHhcC
Q 034150 85 GKLVPLLRDAG 95 (102)
Q Consensus 85 g~L~~~l~~~g 95 (102)
+|.+.+++.|
T Consensus 302 -~l~~~~~~~g 311 (608)
T TIGR03811 302 -ALRNKLMKEG 311 (608)
T ss_pred -HHHHHHHHcC
Confidence 3444444444
No 355
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=31.96 E-value=1.5e+02 Score=21.56 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=47.1
Q ss_pred CceEEecCCCCHHHHH---HHhhCCCCCccceEEeccCCC--hHHHHHHHHHHhCCCCcceEEEcCeEEech----HHHH
Q 034150 9 NEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLILEGD--GSKIQAALAEWTGQRTVPNVFIGGKHIGGC----DTVV 79 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~--~~~~~~~l~~~~g~~~vP~ifi~g~~igg~----~~l~ 79 (102)
+.|.+|+ +.|.--.. ...+.|++.-.-+...|..-+ ...+.......+++..|-.|-|+.+.+.+. +.|.
T Consensus 77 ~~IR~Y~-sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~ 155 (305)
T COG5309 77 HSIRTYG-SDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLI 155 (305)
T ss_pred ceEEEee-ccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHH
Confidence 4688999 77776666 556666443211222232211 112223333346788888889998876443 4555
Q ss_pred HHHHCCCcHHHHHhcCc
Q 034150 80 EKHQGGKLVPLLRDAGA 96 (102)
Q Consensus 80 ~~~~~g~L~~~l~~~g~ 96 (102)
+++. ..+..|+++|-
T Consensus 156 ~~I~--~vrsav~~agy 170 (305)
T COG5309 156 EYID--DVRSAVKEAGY 170 (305)
T ss_pred HHHH--HHHHHHHhcCC
Confidence 5554 45566666653
No 356
>PF12728 HTH_17: Helix-turn-helix domain
Probab=31.79 E-value=75 Score=15.88 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=23.1
Q ss_pred HHHHhCCCCcceEEEcCeEEechHHHHHHHHCC
Q 034150 53 LAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGG 85 (102)
Q Consensus 53 l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g 85 (102)
+.++.....+|.+.++++..-.-+++.++.+++
T Consensus 18 v~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 18 VYRWIRQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HHHHHHcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 333444568888888888777778887777654
No 357
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=31.69 E-value=67 Score=20.99 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=9.1
Q ss_pred EecCCCCHHHHH
Q 034150 13 CPPLESCAFCLV 24 (102)
Q Consensus 13 vy~~~~Cp~C~~ 24 (102)
+|+.|.|++|-.
T Consensus 2 ~F~dPlc~~C~~ 13 (176)
T PF13743_consen 2 LFVDPLCSWCWG 13 (176)
T ss_dssp EEE-TT-HHHHH
T ss_pred eeeCCCChHHHH
Confidence 689999999998
No 358
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=31.51 E-value=32 Score=18.76 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=9.0
Q ss_pred CCCHHHHHHHhh
Q 034150 17 ESCAFCLVLFSS 28 (102)
Q Consensus 17 ~~Cp~C~~~L~~ 28 (102)
+-||.|+++.++
T Consensus 45 PVCP~Ck~iye~ 56 (58)
T PF11238_consen 45 PVCPECKEIYES 56 (58)
T ss_pred CCCcCHHHHHHh
Confidence 569999985554
No 359
>PLN03032 serine decarboxylase; Provisional
Probab=31.23 E-value=2.2e+02 Score=21.14 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=38.7
Q ss_pred EEecCCCCHHHHH-HHhhCCCCCccceEEeccC--CChHHHHHHHHHHhCCCCcceEEE---cCeEEechHHHHHH
Q 034150 12 CCPPLESCAFCLV-LFSSTNNKFLKSLHVLILE--GDGSKIQAALAEWTGQRTVPNVFI---GGKHIGGCDTVVEK 81 (102)
Q Consensus 12 vvy~~~~Cp~C~~-~L~~~~i~~~~~~i~id~~--~~~~~~~~~l~~~~g~~~vP~ifi---~g~~igg~~~l~~~ 81 (102)
++|..+.-.+|.. .++-.++... .+.+|.+ -|...+++.+.+.. .-|.+++ +....|..|++.++
T Consensus 113 ~vi~s~~~H~Sv~kaa~~lg~~~~--~V~~d~~g~id~~~L~~~i~~~~---~~~~lvv~tagtt~tG~idpi~eI 183 (374)
T PLN03032 113 ILYASRESHYSVFKAARMYRMEAV--KVPTLPSGEIDYDDLERALAKNR---DKPAILNVNIGTTVKGAVDDLDRI 183 (374)
T ss_pred EEEeCCCceeHHHHHHHHcCCCCe--EeeeCCCCcCcHHHHHHHHHHcC---CCCEEEEEEecCcCCccCCCHHHH
Confidence 4666677777777 6666677776 6676653 34455565555422 2344432 44567888877643
No 360
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=31.14 E-value=42 Score=20.26 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=14.1
Q ss_pred CCCCcceEEEcCeEEechH
Q 034150 58 GQRTVPNVFIGGKHIGGCD 76 (102)
Q Consensus 58 g~~~vP~ifi~g~~igg~~ 76 (102)
|....=++||||.++|.+-
T Consensus 60 g~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 60 GNAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp STTEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEECCEEeeeec
Confidence 4445568999999998753
No 361
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=30.86 E-value=1.1e+02 Score=21.10 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCCHHHHH----------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcC
Q 034150 17 ESCAFCLV----------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGG 69 (102)
Q Consensus 17 ~~Cp~C~~----------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g 69 (102)
..||-|.. .|.+.++.|. -|...+ .+-...+++.-|+. +|-+=..|
T Consensus 83 ~~C~gCs~~~D~~~g~l~hL~~rd~tfa----~vSraP--~~~i~afk~rmGW~-~pw~Ss~g 138 (211)
T PF05988_consen 83 EGCPGCSFWADHIDGALRHLHARDTTFA----VVSRAP--LEKIEAFKRRMGWT-FPWYSSYG 138 (211)
T ss_pred CCCCchhhhHhhhhhhHHHHHhCCceEE----EEeCCC--HHHHHHHHHhcCCC-ceEEEcCC
Confidence 57999988 4566666665 444433 44456667777877 77664443
No 362
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=30.80 E-value=34 Score=22.77 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=29.2
Q ss_pred eEEEcCeEEechHHHHHHHHCCCcHHHHHhcCchhhhcC
Q 034150 64 NVFIGGKHIGGCDTVVEKHQGGKLVPLLRDAGALALADK 102 (102)
Q Consensus 64 ~ifi~g~~igg~~~l~~~~~~g~L~~~l~~~g~~~~~~~ 102 (102)
.+|+|+-.|.|.+.-.-...-..+...|+++|...+.+|
T Consensus 157 ~~Y~DDili~s~~~~e~~~~l~~v~~~l~~~gl~l~~~K 195 (210)
T cd03715 157 LQYVDDLLLAADSEEDCLKGTDALLTHLGELGYKVSPKK 195 (210)
T ss_pred EEECCcEEEecCCHHHHHHHHHHHHHHHHHCCCCcCHHH
Confidence 468899999886654444455588889999999877665
No 363
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=30.21 E-value=59 Score=21.63 Aligned_cols=31 Identities=10% Similarity=-0.083 Sum_probs=23.0
Q ss_pred CCceEEecCCCCHHHHH---HHhhCCCCCccceEEecc
Q 034150 8 VNEACCPPLESCAFCLV---LFSSTNNKFLKSLHVLIL 42 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i~id~ 42 (102)
+.+|++.+..+|.-+.- +-+.++.+|- |.|.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~----D~D~ 35 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFI----DTDQ 35 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcc----cchH
Confidence 34689999999998887 4456787776 6664
No 364
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=30.10 E-value=1.3e+02 Score=23.19 Aligned_cols=57 Identities=25% Similarity=0.254 Sum_probs=41.9
Q ss_pred EEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEe--chHHHHHHHHCCCcHHHHHhcC
Q 034150 38 HVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIG--GCDTVVEKHQGGKLVPLLRDAG 95 (102)
Q Consensus 38 i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~ig--g~~~l~~~~~~g~L~~~l~~~g 95 (102)
+.+..+.++.+ ...+.+.++..++|+|--+++.+| ..|++.+..++..=+..++.+|
T Consensus 207 ~~V~~~~dqee-vA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~eDi~~~~G 265 (451)
T COG2239 207 VSVLADDDQEE-VARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATEDILRMAG 265 (451)
T ss_pred eeecccCCHHH-HHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444344 344445688899999999999998 6688888888777778888888
No 365
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=29.97 E-value=1.8e+02 Score=19.76 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=32.6
Q ss_pred HHhhCCCCCccceEEeccC--CChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCC
Q 034150 25 LFSSTNNKFLKSLHVLILE--GDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGG 85 (102)
Q Consensus 25 ~L~~~~i~~~~~~i~id~~--~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g 85 (102)
.+..+++.+- +.+++.+ ..+.. .+.++++.....+|.+.-+| ++..+++.++.+.|
T Consensus 149 ~~~~~g~~ii--~tdI~~dGt~~G~d-~eli~~i~~~~~~pvia~GG--i~s~ed~~~l~~~G 206 (221)
T TIGR00734 149 FLNSFDYGLI--VLDIHSVGTMKGPN-LELLTKTLELSEHPVMLGGG--ISGVEDLELLKEMG 206 (221)
T ss_pred HHHhcCCEEE--EEECCccccCCCCC-HHHHHHHHhhCCCCEEEeCC--CCCHHHHHHHHHCC
Confidence 5666675333 4455553 11222 33445555556789887777 67778777665543
No 366
>PF07627 PSCyt3: Protein of unknown function (DUF1588); InterPro: IPR013039 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=29.84 E-value=28 Score=21.04 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHhhCCCCCc
Q 034150 16 LESCAFCLVLFSSTNNKFL 34 (102)
Q Consensus 16 ~~~Cp~C~~~L~~~~i~~~ 34 (102)
.+.|.-|+..++-.|..|+
T Consensus 69 ~~~Ca~CH~~iDP~Gf~fE 87 (101)
T PF07627_consen 69 NPACASCHRKIDPLGFAFE 87 (101)
T ss_pred CCcHHHHhhhhCccchhhh
Confidence 4689999998899999888
No 367
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=29.83 E-value=45 Score=20.20 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=13.6
Q ss_pred CCCcceEEEcCeEEech
Q 034150 59 QRTVPNVFIGGKHIGGC 75 (102)
Q Consensus 59 ~~~vP~ifi~g~~igg~ 75 (102)
...-|.|++||+.+|..
T Consensus 39 ~~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 39 SAVKPDVYVDGELIGEL 55 (117)
T ss_pred ccccceEEECCEEEEEe
Confidence 34569999999999864
No 368
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=29.62 E-value=1.2e+02 Score=18.38 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=21.8
Q ss_pred CCceEEecCCCCHHHHH--HHhhCCCCCc
Q 034150 8 VNEACCPPLESCAFCLV--LFSSTNNKFL 34 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~--~L~~~~i~~~ 34 (102)
..+|++.....|++..+ ...+.|...-
T Consensus 43 ~GkIvLv~rg~c~f~~K~~~A~~aGA~av 71 (122)
T cd04816 43 KGAIVLVDRGGCPFADKQKVAAARGAVAV 71 (122)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHCCCcEE
Confidence 56899998999999988 6677787654
No 369
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=29.34 E-value=44 Score=18.07 Aligned_cols=11 Identities=45% Similarity=0.899 Sum_probs=9.7
Q ss_pred eEEEcCeEEec
Q 034150 64 NVFIGGKHIGG 74 (102)
Q Consensus 64 ~ifi~g~~igg 74 (102)
.||+||+++|-
T Consensus 14 ~V~vdg~~~G~ 24 (71)
T PF08308_consen 14 EVYVDGKYIGT 24 (71)
T ss_pred EEEECCEEecc
Confidence 78999999993
No 370
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=29.33 E-value=75 Score=20.08 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCCCcHHHHHh
Q 034150 25 LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVPLLRD 93 (102)
Q Consensus 25 ~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g~L~~~l~~ 93 (102)
.|.+.|+.+. .+++... +..+..+.++ +.-.||+.| |.-..+....++-.|.+.|++
T Consensus 8 ~f~~~g~~v~--~l~~~~~-~~~~~~~~i~------~ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 8 AFRKLGFEVD--QLDLSDR-NDADILEAIR------EADAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHCT-EEE--ECCCTSC-GHHHHHHHHH------HSSEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred HHHHCCCEEE--EEeccCC-ChHHHHHHHH------hCCEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 6788887766 4444443 2234444444 356777766 223334555555556666665
No 371
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=29.03 E-value=51 Score=18.81 Aligned_cols=14 Identities=36% Similarity=0.377 Sum_probs=9.5
Q ss_pred CcHHHHHhcCchhh
Q 034150 86 KLVPLLRDAGALAL 99 (102)
Q Consensus 86 ~L~~~l~~~g~~~~ 99 (102)
+|.++|+.+|++..
T Consensus 13 ~L~qlLK~~g~i~s 26 (73)
T COG2501 13 TLGQLLKLAGLIES 26 (73)
T ss_pred EHHHHHHHhCcccC
Confidence 67777777777654
No 372
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.41 E-value=1.6e+02 Score=20.66 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=43.5
Q ss_pred EEecCCCCHHHHHHHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCC--CcHH
Q 034150 12 CCPPLESCAFCLVLFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGG--KLVP 89 (102)
Q Consensus 12 vvy~~~~Cp~C~~~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g--~L~~ 89 (102)
.++-...|=.-+.+|.-.+.+|. +.-.+.. +. .+....+|.+-+|...+.+|..++..++.. .|..
T Consensus 30 Ll~d~ascLAVqtfLrMcnLPf~--v~~~~Na--------ef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s 97 (257)
T KOG3027|consen 30 LLPDNASCLAVQTFLRMCNLPFN--VRQRANA--------EF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTS 97 (257)
T ss_pred ccccchhHHHHHHHHHHcCCCce--eeecCCc--------cc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchhh
Confidence 33333334333339999999998 5444321 12 233348999999999999999988876654 3444
Q ss_pred HHH
Q 034150 90 LLR 92 (102)
Q Consensus 90 ~l~ 92 (102)
.|.
T Consensus 98 ~ls 100 (257)
T KOG3027|consen 98 WLS 100 (257)
T ss_pred hhh
Confidence 443
No 373
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=28.20 E-value=34 Score=19.40 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=28.3
Q ss_pred CCCcceEEEcCeEEechHHHHHHHHCCCcHHHHHhc
Q 034150 59 QRTVPNVFIGGKHIGGCDTVVEKHQGGKLVPLLRDA 94 (102)
Q Consensus 59 ~~~vP~ifi~g~~igg~~~l~~~~~~g~L~~~l~~~ 94 (102)
....|.||+=+..-||.--+..+.+...+.++|+.+
T Consensus 32 ~~~~~~i~lyD~~~GG~G~~~~l~~~~~~~~ll~~A 67 (84)
T PF09369_consen 32 RQGPPRIFLYDTVPGGAGYAERLFERERFEELLRRA 67 (84)
T ss_pred CCCccEEEEEECCCCchhhHhhhcChhHHHHHHHHH
Confidence 356789998888888888787887766688888765
No 374
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=28.18 E-value=53 Score=14.94 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=6.4
Q ss_pred eEEEcCe--EEechH
Q 034150 64 NVFIGGK--HIGGCD 76 (102)
Q Consensus 64 ~ifi~g~--~igg~~ 76 (102)
.+.+|++ ++||.+
T Consensus 9 ~~vvD~~~a~vGg~n 23 (28)
T PF00614_consen 9 FVVVDDRVAFVGGAN 23 (28)
T ss_dssp EEEETTTEEEEE---
T ss_pred EEEEcCCEEEECcee
Confidence 4566775 677764
No 375
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit. This model represents the carbon-monoxide dehydrogenase catalytic subunit. This protein is related to prismane (also called hybrid cluster protein), a complex whose activity is not yet fully described; the two share similar sets of ligands to unusual metal-containing clusters.
Probab=28.02 E-value=53 Score=26.33 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=27.3
Q ss_pred cceEEEcCeEEechHHHHHHHHCCCcHHHHHhcCc
Q 034150 62 VPNVFIGGKHIGGCDTVVEKHQGGKLVPLLRDAGA 96 (102)
Q Consensus 62 vP~ifi~g~~igg~~~l~~~~~~g~L~~~l~~~g~ 96 (102)
-|.|.+.|+-.--+..+.++.++.+|+++++++|+
T Consensus 245 ~vnIlV~GH~p~l~~~iv~~~~~~el~~~ak~~Ga 279 (621)
T TIGR01702 245 YVNIVVNGHQPLLSEILCEAARDEDIQDEAKAAGA 279 (621)
T ss_pred CcEEEEECCCchHHHHHHHHhhchhHHHHHHHcCC
Confidence 35555566655566778999999999999999997
No 376
>PF05949 DUF881: Bacterial protein of unknown function (DUF881); InterPro: IPR010273 This family consists of a series of hypothetical bacterial proteins. One of the family members Q45543 from SWISSPROT from Bacillus subtilis is thought to be involved in cell division and sporulation [].; PDB: 3GMG_B.
Probab=27.98 E-value=89 Score=20.03 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=27.3
Q ss_pred ceEEEcCe---------EEechHHHHHHHH-CCCcHHHHHhcCch
Q 034150 63 PNVFIGGK---------HIGGCDTVVEKHQ-GGKLVPLLRDAGAL 97 (102)
Q Consensus 63 P~ifi~g~---------~igg~~~l~~~~~-~g~L~~~l~~~g~~ 97 (102)
+.+.|||+ -||..+.|..... .+.+.+.|+..|.-
T Consensus 79 ~~i~Vng~~i~~Py~I~AIGdp~~L~~al~~~~~~~~~~~~~gi~ 123 (149)
T PF05949_consen 79 GTILVNGRPISPPYVIKAIGDPETLYSALNIPGGVVDSLRQRGIR 123 (149)
T ss_dssp TEEEETTEEE-SSEEEEEES-HHHHHHHHTSTTSCHHHHHCTT-E
T ss_pred CEEEECCEEccCCEEEEEEeCHHHHHHHHccccHHHHHHHHcCCE
Confidence 67888885 4788999999988 88888888887763
No 377
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=27.74 E-value=51 Score=17.49 Aligned_cols=12 Identities=25% Similarity=0.730 Sum_probs=8.7
Q ss_pred CCHHHHHHHhhC
Q 034150 18 SCAFCLVLFSST 29 (102)
Q Consensus 18 ~Cp~C~~~L~~~ 29 (102)
-|+.|.++|...
T Consensus 6 RC~~CnklLa~~ 17 (51)
T PF10122_consen 6 RCGHCNKLLAKA 17 (51)
T ss_pred eccchhHHHhhh
Confidence 599999955543
No 378
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=27.28 E-value=1.3e+02 Score=21.64 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=26.2
Q ss_pred eEEecCCCCHH-HHH----------HHh-hCCCCCccceEEeccC-CChHHHHHHHHH
Q 034150 11 ACCPPLESCAF-CLV----------LFS-STNNKFLKSLHVLILE-GDGSKIQAALAE 55 (102)
Q Consensus 11 vvvy~~~~Cp~-C~~----------~L~-~~~i~~~~~~i~id~~-~~~~~~~~~l~~ 55 (102)
++-|+-+.||. |.. .++ ..|++..+.+|-+|.. +....+.+++++
T Consensus 143 LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e 200 (280)
T KOG2792|consen 143 LIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE 200 (280)
T ss_pred EEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence 45578899986 655 222 3466654557777763 233445555554
No 379
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=26.90 E-value=94 Score=15.45 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=20.8
Q ss_pred EeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEec
Q 034150 39 VLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGG 74 (102)
Q Consensus 39 ~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg 74 (102)
-++.+..-.+..+.+. ..+.+.+|.+=-+|+++|=
T Consensus 11 ~v~~~~~l~~~~~~~~-~~~~~~~~V~d~~~~~~G~ 45 (57)
T PF00571_consen 11 TVSPDDSLEEALEIMR-KNGISRLPVVDEDGKLVGI 45 (57)
T ss_dssp EEETTSBHHHHHHHHH-HHTSSEEEEESTTSBEEEE
T ss_pred EEcCcCcHHHHHHHHH-HcCCcEEEEEecCCEEEEE
Confidence 3343333344444444 3677888887778888883
No 380
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=26.54 E-value=68 Score=20.82 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=19.1
Q ss_pred ceEEec-CCCCHHHHH----HHhhCCCCCc
Q 034150 10 EACCPP-LESCAFCLV----LFSSTNNKFL 34 (102)
Q Consensus 10 ~vvvy~-~~~Cp~C~~----~L~~~~i~~~ 34 (102)
.++||. ++-|++|+. +.++.|++.-
T Consensus 101 ~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L 130 (146)
T PF14437_consen 101 SMTMYVDRDVCGYCGGDIPSMAEKLGLKSL 130 (146)
T ss_pred eEEEEECcccchHHHHHHHHHHHHcCCCeE
Confidence 456664 578999999 7788999743
No 381
>smart00536 AXH domain in Ataxins and HMG containing proteins. unknown function
Probab=26.45 E-value=52 Score=20.52 Aligned_cols=28 Identities=0% Similarity=-0.312 Sum_probs=23.9
Q ss_pred cCCceEEecCCCCHHHHH-HHhhCCCCCc
Q 034150 7 FVNEACCPPLESCAFCLV-LFSSTNNKFL 34 (102)
Q Consensus 7 ~~~~vvvy~~~~Cp~C~~-~L~~~~i~~~ 34 (102)
..+|.-||++-||.+|.. -+..+|++-.
T Consensus 74 ~eHPfFV~gqGWsSc~P~lT~~~ygL~C~ 102 (116)
T smart00536 74 VEHPFFVKGKGWSSCYPSLTVQLYGLPCC 102 (116)
T ss_pred cCCCeEEcCccccccChhhhhhhcCCcce
Confidence 467889999999999999 7788888866
No 382
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=26.14 E-value=97 Score=18.81 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=16.2
Q ss_pred ecCCCCHH-HHH-HHhhCCCCCc
Q 034150 14 PPLESCAF-CLV-LFSSTNNKFL 34 (102)
Q Consensus 14 y~~~~Cp~-C~~-~L~~~~i~~~ 34 (102)
..-++||. |.+ .|++.|++..
T Consensus 55 IaIDGC~~~Ca~k~le~~g~~~~ 77 (110)
T PF08859_consen 55 IAIDGCPLCCAKKILEEAGVKPD 77 (110)
T ss_pred EEECCCHHHHHHHHHHHcCCCCc
Confidence 34588995 777 9999998765
No 383
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=26.11 E-value=21 Score=19.62 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=15.4
Q ss_pred CCcccccCCceEEecCCCCHHHHH-HHhh
Q 034150 1 MNECAVFVNEACCPPLESCAFCLV-LFSS 28 (102)
Q Consensus 1 m~e~~i~~~~vvvy~~~~Cp~C~~-~L~~ 28 (102)
|.+.|=...+.++ ..+.||.|.. -|.+
T Consensus 1 M~~kAC~~C~~i~-~~~~CP~Cgs~~~T~ 28 (61)
T PRK08351 1 MTEKACRHCHYIT-TEDRCPVCGSRDLSD 28 (61)
T ss_pred CchhhhhhCCccc-CCCcCCCCcCCcccc
Confidence 4444444444444 5567999987 4433
No 384
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=25.80 E-value=90 Score=14.88 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=19.6
Q ss_pred HHHHhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 53 LAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 53 l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
+.++.....+|.+.+++...--.+++.++.+
T Consensus 18 i~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 18 VYRLIHEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HHHHHHcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 3333334568888777777767777766554
No 385
>PRK00234 Maf-like protein; Reviewed
Probab=25.74 E-value=1.5e+02 Score=19.91 Aligned_cols=28 Identities=11% Similarity=-0.038 Sum_probs=18.6
Q ss_pred ceEEecCCCCHHHHHHHhhCCCCCccceEEec
Q 034150 10 EACCPPLESCAFCLVLFSSTNNKFLKSLHVLI 41 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~~L~~~~i~~~~~~i~id 41 (102)
++++= |..|.-+.+|++.|++|+ .+.-+
T Consensus 3 ~iILA--S~SprR~elL~~~gi~f~--v~~~~ 30 (192)
T PRK00234 3 PLLLA--SSSPYRRELLARLRLPFT--WASPD 30 (192)
T ss_pred CEEEe--cCCHHHHHHHHHCCCCcE--EECCC
Confidence 44444 444665559999999998 55433
No 386
>PRK00884 Maf-like protein; Reviewed
Probab=25.70 E-value=1.5e+02 Score=19.93 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=18.7
Q ss_pred ceEEecCCCCHHHHHHHhhCCCCCccceEEec
Q 034150 10 EACCPPLESCAFCLVLFSSTNNKFLKSLHVLI 41 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~~L~~~~i~~~~~~i~id 41 (102)
++++=| ..|.-+.+|++.|++|+ .+.-+
T Consensus 3 ~iILAS--~SprR~elL~~~g~~f~--v~~~~ 30 (194)
T PRK00884 3 QLILAS--TSPYRRALLEKLQLPFE--CAAPE 30 (194)
T ss_pred CEEEeC--CCHHHHHHHHHCCCCCE--EECCC
Confidence 455444 44666669999999998 55333
No 387
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=25.56 E-value=1.8e+02 Score=18.47 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=10.4
Q ss_pred CceEEe--cCCCCHHHHH
Q 034150 9 NEACCP--PLESCAFCLV 24 (102)
Q Consensus 9 ~~vvvy--~~~~Cp~C~~ 24 (102)
.+++|| -..+||.|..
T Consensus 30 k~vvl~fyP~~~tp~Ct~ 47 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSA 47 (155)
T ss_pred CcEEEEEeCCCCCCCCch
Confidence 356665 4457888876
No 388
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=25.46 E-value=90 Score=18.33 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=11.6
Q ss_pred hCCCCcceEEEcCeE
Q 034150 57 TGQRTVPNVFIGGKH 71 (102)
Q Consensus 57 ~g~~~vP~ifi~g~~ 71 (102)
+-.+.+|.+|+.|.-
T Consensus 66 ~~~r~~emlFvRGd~ 80 (91)
T KOG3460|consen 66 TTKRTVEMLFVRGDG 80 (91)
T ss_pred hhhcceeEEEEeCCe
Confidence 345789999998863
No 389
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=25.38 E-value=57 Score=16.72 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=11.8
Q ss_pred CCcceEEEcCeEEec
Q 034150 60 RTVPNVFIGGKHIGG 74 (102)
Q Consensus 60 ~~vP~ifi~g~~igg 74 (102)
..++.|||||+.+-.
T Consensus 18 ~GI~~V~VNG~~vv~ 32 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVE 32 (48)
T ss_dssp BSEEEEEETTEEEEC
T ss_pred CCEEEEEECCEEEEE
Confidence 467899999997644
No 390
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=25.30 E-value=3.3e+02 Score=21.80 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=39.3
Q ss_pred ceEEecCCCCH-HHHH-----HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHH
Q 034150 10 EACCPPLESCA-FCLV-----LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 83 (102)
Q Consensus 10 ~vvvy~~~~Cp-~C~~-----~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~ 83 (102)
+|.|++...|- -|.. +|+.-.|+|. ++.|... .+++....+....... +|+|| .||.-+|.++.+
T Consensus 1 ~Vli~v~~dvDalcA~kiL~~Llk~d~I~~~--l~PV~gy---~el~~~~~~~~~~~~~-vilIn---cGa~~dl~~~l~ 71 (622)
T PF02724_consen 1 SVLILVALDVDALCACKILTSLLKSDNIQYS--LVPVSGY---SELERAYEELDEDIKS-VILIN---CGATVDLEEFLE 71 (622)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHHhcCCCee--EEEeCCH---HHHHHHHHHHhhhhce-EEEEe---cCchhhHHHHhC
Confidence 35666655433 2333 8899999999 9999875 5566666555322111 55664 466666666543
No 391
>PF14998 Ripply: Transcription Regulator
Probab=25.24 E-value=76 Score=18.76 Aligned_cols=37 Identities=11% Similarity=-0.060 Sum_probs=22.7
Q ss_pred cCCceEEecC-CCCHHHHH-----HHhhCCCCCccceEEeccCC
Q 034150 7 FVNEACCPPL-ESCAFCLV-----LFSSTNNKFLKSLHVLILEG 44 (102)
Q Consensus 7 ~~~~vvvy~~-~~Cp~C~~-----~L~~~~i~~~~~~i~id~~~ 44 (102)
..|+|.+|-- +.|-.=-. +|++.-|.=++.++| |.++
T Consensus 40 FqHPVRL~wPkSk~~dYLy~~gE~lL~nFPVQATI~fY~-Dsds 82 (87)
T PF14998_consen 40 FQHPVRLYWPKSKCYDYLYSEGEKLLANFPVQATIHFYE-DSDS 82 (87)
T ss_pred cCCceEeeccchHHHHHHHHHHHHHHHcCCceeEEEecc-CCCc
Confidence 5788999863 33432111 888888766554677 5543
No 392
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=25.11 E-value=1.2e+02 Score=21.92 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=18.6
Q ss_pred cceEEEcCeEEechHHHHHHHHCCCcH
Q 034150 62 VPNVFIGGKHIGGCDTVVEKHQGGKLV 88 (102)
Q Consensus 62 vP~ifi~g~~igg~~~l~~~~~~g~L~ 88 (102)
.|++|.++ .-|-|.++.++.+-|.+.
T Consensus 60 ~pvtvcGD-vHGqf~dl~ELfkiGG~~ 85 (319)
T KOG0371|consen 60 CPVTVCGD-VHGQFHDLIELFKIGGLA 85 (319)
T ss_pred cceEEecC-cchhHHHHHHHHHccCCC
Confidence 47766555 668888888888777664
No 393
>PRK00766 hypothetical protein; Provisional
Probab=25.03 E-value=93 Score=21.09 Aligned_cols=46 Identities=9% Similarity=0.007 Sum_probs=25.8
Q ss_pred CCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHH
Q 034150 30 NNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 77 (102)
Q Consensus 30 ~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~ 77 (102)
|+-+. .+.+|..+-...+.+.+........+=.|+.+|--+|||+-
T Consensus 42 Gv~~~--~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNv 87 (194)
T PRK00766 42 GVLSR--WITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNV 87 (194)
T ss_pred eEEEE--EEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEE
Confidence 44456 67777653322222222221122466678999999999863
No 394
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=24.86 E-value=2.5e+02 Score=21.82 Aligned_cols=48 Identities=8% Similarity=-0.204 Sum_probs=28.6
Q ss_pred eEEecCCCCHHHHH---HHhhCC-----CCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEE
Q 034150 11 ACCPPLESCAFCLV---LFSSTN-----NKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFI 67 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~-----i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi 67 (102)
+++|+.+.|++|.. +|++.. |.++ +++...+ ..+.+.++...+|.+.+
T Consensus 370 l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~--~~~~~~~-------~~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 370 LLLFLDGSNEKSAELQSFLGEFASLSEKLNSE--AVNRGEE-------PESETLPKITKLPTVAL 425 (555)
T ss_pred EEEEECCCchhhHHHHHHHHHHHhcCCcEEEE--Eeccccc-------hhhHhhcCCCcCCEEEE
Confidence 55688889999998 665432 3333 3333222 23444566667898865
No 395
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=24.73 E-value=99 Score=18.60 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=20.8
Q ss_pred CCcceEE-EcCeEEechHHHHHHHHCC
Q 034150 60 RTVPNVF-IGGKHIGGCDTVVEKHQGG 85 (102)
Q Consensus 60 ~~vP~if-i~g~~igg~~~l~~~~~~g 85 (102)
..||.+| .+....-|.||+....+-.
T Consensus 3 ~dV~v~~~~~~v~WvgaDEil~IL~lp 29 (97)
T PF04512_consen 3 TDVPVFFDVDMVLWVGADEILSILRLP 29 (97)
T ss_pred CCeeEEEecCceEEecHHHHHHHhCCC
Confidence 4689999 8888888999988876543
No 396
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.70 E-value=61 Score=23.38 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=16.4
Q ss_pred CCCcceEEEcCeEEechHH
Q 034150 59 QRTVPNVFIGGKHIGGCDT 77 (102)
Q Consensus 59 ~~~vP~ifi~g~~igg~~~ 77 (102)
..||-.+..+|+.|||.|.
T Consensus 163 SNTVtllvkdGkviG~iDA 181 (332)
T COG4020 163 SNTVTLLVKDGKVIGGIDA 181 (332)
T ss_pred CCeEEEEEEcCeEeechhh
Confidence 3678888999999999985
No 397
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=24.60 E-value=74 Score=25.33 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=39.2
Q ss_pred HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceE---EEcCeEEechHHHHHHHHCCCcHHHHHhcCchhh
Q 034150 25 LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNV---FIGGKHIGGCDTVVEKHQGGKLVPLLRDAGALAL 99 (102)
Q Consensus 25 ~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~i---fi~g~~igg~~~l~~~~~~g~L~~~l~~~g~~~~ 99 (102)
++.+..++|. .+. ++.|..++|.+.+=.+ |-|..-+.= +.++...|+|..+++..|-+..
T Consensus 111 Iike~KvkYV----~~E--------k~~l~~L~~hPgivkLy~TFQD~~sLYF---vLe~A~nGdll~~i~K~Gsfde 173 (604)
T KOG0592|consen 111 IIKEKKVKYV----TRE--------KEALTQLSGHPGIVKLYFTFQDEESLYF---VLEYAPNGDLLDLIKKYGSFDE 173 (604)
T ss_pred HHhhcccchh----hHH--------HHHHHHhhCCCCeEEEEEEeecccceEE---EEEecCCCcHHHHHHHhCcchH
Confidence 6666777776 333 5667777777776655 445542221 3467788999999988887543
No 398
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=24.51 E-value=1.3e+02 Score=17.24 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=14.0
Q ss_pred CCCcceEEEcCeEEech
Q 034150 59 QRTVPNVFIGGKHIGGC 75 (102)
Q Consensus 59 ~~~vP~ifi~g~~igg~ 75 (102)
...-|..+|||+.|-+-
T Consensus 43 C~~~pFAlVnG~~V~A~ 59 (78)
T PF07293_consen 43 CAKKPFALVNGEIVAAE 59 (78)
T ss_pred CCCCccEEECCEEEecC
Confidence 46679999999999764
No 399
>COG5204 SPT4 Transcription elongation factor SPT4 [Transcription]
Probab=24.40 E-value=18 Score=21.87 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=16.5
Q ss_pred EEecCCCCHHHHHHHhhCCCC
Q 034150 12 CCPPLESCAFCLVLFSSTNNK 32 (102)
Q Consensus 12 vvy~~~~Cp~C~~~L~~~~i~ 32 (102)
-.|.+.+||.|..+..+-|+.
T Consensus 22 n~F~~dGCpNc~~l~~~~gV~ 42 (112)
T COG5204 22 NGFRKDGCPNCPMLNMKGGVT 42 (112)
T ss_pred ccccccCCCCCcccccccCcc
Confidence 358889999999976666764
No 400
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=24.32 E-value=1.2e+02 Score=17.67 Aligned_cols=24 Identities=8% Similarity=-0.094 Sum_probs=17.3
Q ss_pred eEEecCCCCHHHHH---HHhhCCCCCc
Q 034150 11 ACCPPLESCAFCLV---LFSSTNNKFL 34 (102)
Q Consensus 11 vvvy~~~~Cp~C~~---~L~~~~i~~~ 34 (102)
|.+++.++|+-..- +.+..++++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~ 27 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFI 27 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccc
Confidence 57889999997666 6666675554
No 401
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=24.06 E-value=1.4e+02 Score=21.30 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=24.7
Q ss_pred HHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCC
Q 034150 51 AALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGG 85 (102)
Q Consensus 51 ~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g 85 (102)
+.++++.....+|.+.-+| ++..+++.++.+.|
T Consensus 197 el~~~l~~~~~ipVIASGG--v~sleDi~~L~~~g 229 (262)
T PLN02446 197 ELVALLGEHSPIPVTYAGG--VRSLDDLERVKVAG 229 (262)
T ss_pred HHHHHHHhhCCCCEEEECC--CCCHHHHHHHHHcC
Confidence 3445555567899999999 78888888877754
No 402
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=23.95 E-value=3.1e+02 Score=21.68 Aligned_cols=68 Identities=9% Similarity=0.080 Sum_probs=42.0
Q ss_pred cCCCCHHHHH---HHhhCCCCCccceEEeccCCChHHHHHHHHHH----------------------hCCCCcceEE--E
Q 034150 15 PLESCAFCLV---LFSSTNNKFLKSLHVLILEGDGSKIQAALAEW----------------------TGQRTVPNVF--I 67 (102)
Q Consensus 15 ~~~~Cp~C~~---~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~----------------------~g~~~vP~if--i 67 (102)
+.++=|.+.. .|+.+|++|+ ..-...+-....+.+.++.. .+..++|+|= +
T Consensus 419 s~sd~~~~~~~~~~l~~~g~~~~--~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~ 496 (577)
T PLN02948 419 SDSDLPTMKDAAEILDSFGVPYE--VTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPV 496 (577)
T ss_pred chhhHHHHHHHHHHHHHcCCCeE--EEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCC
Confidence 4456677777 9999999998 55555543333444333221 1335677773 3
Q ss_pred cCeEEechHHHHHHHHC
Q 034150 68 GGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 68 ~g~~igg~~~l~~~~~~ 84 (102)
+....+|.|.|..+.+.
T Consensus 497 ~~~~~~g~~~l~s~~~~ 513 (577)
T PLN02948 497 KTSHLDGLDSLLSIVQM 513 (577)
T ss_pred CCCCCCcHHHHHHHhcC
Confidence 44467888888887765
No 403
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=23.87 E-value=30 Score=22.77 Aligned_cols=64 Identities=11% Similarity=-0.103 Sum_probs=34.3
Q ss_pred CCceEEecCCCCHHHHH------HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHH
Q 034150 8 VNEACCPPLESCAFCLV------LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 77 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~------~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~ 77 (102)
.+.|.+=+..-|.-.-. +-+..||++. ...-|.... .....=++....-|.+.|||+.+|+.+.
T Consensus 77 r~~i~VC~~t~C~l~Gs~~l~~~l~~~lgi~~g--ett~DG~ft----l~~v~ClGaC~~AP~vmind~~~~~lt~ 146 (160)
T COG1905 77 RHHIRVCTGTACHLKGSEALLKALEKKLGIKPG--ETTADGKFT----LEPVECLGACGQAPVVMINDDVYGRLTP 146 (160)
T ss_pred CeEEEEeCCcHHhhcChHHHHHHHHHHhCCCCC--CcCCCCeEE----EeeeeeecccccCCEEEECCchhccCCH
Confidence 34455555555554433 3345677776 222222111 0111113456778999999999998654
No 404
>PRK10670 hypothetical protein; Provisional
Probab=23.78 E-value=1.2e+02 Score=19.46 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.6
Q ss_pred HHhhCCCCCccceEEeccC
Q 034150 25 LFSSTNNKFLKSLHVLILE 43 (102)
Q Consensus 25 ~L~~~~i~~~~~~i~id~~ 43 (102)
+|++.+++|+ .++++.+
T Consensus 7 ~L~~~~i~y~--~~~~~h~ 23 (159)
T PRK10670 7 LLEKNKISFT--LHTYEHD 23 (159)
T ss_pred HHHHCCCCeE--EEeeccC
Confidence 7999999999 7666654
No 405
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=23.41 E-value=1.5e+02 Score=22.34 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=42.3
Q ss_pred EecCCC---CHHHHH-------HHhhCCCCCccc---eEEeccCCChHHHHHHHHHHhCCCCcceE-EEcCeEEechHHH
Q 034150 13 CPPLES---CAFCLV-------LFSSTNNKFLKS---LHVLILEGDGSKIQAALAEWTGQRTVPNV-FIGGKHIGGCDTV 78 (102)
Q Consensus 13 vy~~~~---Cp~C~~-------~L~~~~i~~~~~---~i~id~~~~~~~~~~~l~~~~g~~~vP~i-fi~g~~igg~~~l 78 (102)
||.+|. -.+|.+ ++++++|+|.++ ++-.+..+ -...+.|..+.-+..+|-+ .|+|.-|
T Consensus 101 IYY~P~SLKAklCV~G~~LlY~yc~e~~IpyKk~GKLIVAt~~~E--iprLd~L~~~g~qN~v~glrmieg~ei------ 172 (453)
T KOG2665|consen 101 IYYKPGSLKAKLCVEGRELLYEYCDEKKIPYKKTGKLIVATESEE--IPRLDALMHRGTQNGVPGLRMIEGSEI------ 172 (453)
T ss_pred eeeCCcccchhhhhccHHHHHHHhhhcCCChhhcceEEEEeChhh--cchHHHHHHhhhhcCCCCeeeeccchh------
Confidence 576665 356776 788999999732 33333321 2235566666667778866 4555322
Q ss_pred HHHHHCCCcHHHHHhcCchhhh
Q 034150 79 VEKHQGGKLVPLLRDAGALALA 100 (102)
Q Consensus 79 ~~~~~~g~L~~~l~~~g~~~~~ 100 (102)
-+++..++...||..+
T Consensus 173 ------~~~EP~crgvkAl~sP 188 (453)
T KOG2665|consen 173 ------MEMEPYCRGVKALLSP 188 (453)
T ss_pred ------hhcChhhhhhhhhcCC
Confidence 2445555555555444
No 406
>PRK00032 Maf-like protein; Reviewed
Probab=23.40 E-value=1.8e+02 Score=19.53 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=19.2
Q ss_pred ceEEecCCCCHHHHHHHhhCCCCCccceEEecc
Q 034150 10 EACCPPLESCAFCLVLFSSTNNKFLKSLHVLIL 42 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~~L~~~~i~~~~~~i~id~ 42 (102)
++++= |..|.-+.+|++.|++|+ .+.-+.
T Consensus 3 ~iILA--S~SprR~elL~~~g~~f~--v~~~~i 31 (190)
T PRK00032 3 SLYLA--SGSPRRRELLTQLGVPFE--VLVPGI 31 (190)
T ss_pred CEEEe--CCCHHHHHHHHHCCCCeE--EEcCCC
Confidence 44444 444666669999999998 554443
No 407
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=22.96 E-value=1.9e+02 Score=17.57 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=27.8
Q ss_pred HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE
Q 034150 25 LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF 66 (102)
Q Consensus 25 ~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if 66 (102)
..++.|+.++ .+.+..+....++.+.+.+++...++=-|+
T Consensus 53 ~~~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN~D~~V~GIl 92 (117)
T PF00763_consen 53 AAEKLGIEFE--LIELPEDISEEELLELIEKLNEDPSVHGIL 92 (117)
T ss_dssp HHHHHT-EEE--EEEE-TTSSHHHHHHHHHHHHH-TT-SEEE
T ss_pred HHHHcCCceE--EEECCCCcCHHHHHHHHHHHhCCCCCCEEE
Confidence 7788999999 888887767788888888887665543333
No 408
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=22.94 E-value=98 Score=26.91 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=33.4
Q ss_pred CCHHHHH-H-HhhCCCCCccceE--------EeccC---CChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHC
Q 034150 18 SCAFCLV-L-FSSTNNKFLKSLH--------VLILE---GDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQG 84 (102)
Q Consensus 18 ~Cp~C~~-~-L~~~~i~~~~~~i--------~id~~---~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~ 84 (102)
.||.|-. + =+.+++.|+- +. |||.+ ..++++-+++++++|...|=++ |.+..+.+...-
T Consensus 710 ~cp~c~~~~~~dg~~L~FEr-FLn~er~~~PDIDldF~~~~r~~v~~Yv~~~yG~~~V~~i-------~T~~t~a~k~A~ 781 (1213)
T TIGR01405 710 DCPKCGAPLKKDGQDIPFET-FLGFKGDKVPDIDLNFSGEYQAKAHNYVKELFGEDHTFRA-------GTIGTVAEKTAY 781 (1213)
T ss_pred cCccccccccccCCCceeee-ccCCCCCCCCCCcccCccccHHHHHHHHHHHhCcccEEEe-------ehHHHHHHhhhh
Confidence 5888877 2 2235566541 11 33333 2346677788888898776333 455555443333
Q ss_pred CCc
Q 034150 85 GKL 87 (102)
Q Consensus 85 g~L 87 (102)
|..
T Consensus 782 ~~v 784 (1213)
T TIGR01405 782 GYV 784 (1213)
T ss_pred hHH
Confidence 333
No 409
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=22.84 E-value=2.3e+02 Score=19.19 Aligned_cols=57 Identities=9% Similarity=0.168 Sum_probs=32.9
Q ss_pred HHhhCCCC-CccceEEeccCC-ChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCC
Q 034150 25 LFSSTNNK-FLKSLHVLILEG-DGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGG 85 (102)
Q Consensus 25 ~L~~~~i~-~~~~~i~id~~~-~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g 85 (102)
.|.+.|+. +. +++++... ......+.++++.....+|.+..+| |...+++.++...|
T Consensus 35 ~~~~~G~~~i~--i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GG--I~s~~d~~~~l~~G 93 (243)
T cd04731 35 RYNEQGADELV--FLDITASSEGRETMLDVVERVAEEVFIPLTVGGG--IRSLEDARRLLRAG 93 (243)
T ss_pred HHHHCCCCEEE--EEcCCcccccCcccHHHHHHHHHhCCCCEEEeCC--CCCHHHHHHHHHcC
Confidence 67778886 33 55776431 1122233444444445689887777 45667777766654
No 410
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=22.68 E-value=3.3e+02 Score=20.66 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCcceEEEcCeEEe--chHHHHHHHHCCCcHHHHHhcCc
Q 034150 48 KIQAALAEWTGQRTVPNVFIGGKHIG--GCDTVVEKHQGGKLVPLLRDAGA 96 (102)
Q Consensus 48 ~~~~~l~~~~g~~~vP~ifi~g~~ig--g~~~l~~~~~~g~L~~~l~~~g~ 96 (102)
+..+.++ .++...+|++--+|+.+| ..+++.+...+..-+++++..|+
T Consensus 216 eal~~m~-~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~~ed~~~~~gv 265 (449)
T TIGR00400 216 EVARLIQ-KYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEATEDFYMIAAV 265 (449)
T ss_pred HHHHHHH-HcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhhHHHHHHhcCC
Confidence 3333443 256677888766788877 66888887777666777777766
No 411
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=22.60 E-value=1.3e+02 Score=19.33 Aligned_cols=25 Identities=8% Similarity=-0.109 Sum_probs=15.9
Q ss_pred CCceEEecCCCCHHHHH---HHhhCCCC
Q 034150 8 VNEACCPPLESCAFCLV---LFSSTNNK 32 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~---~L~~~~i~ 32 (102)
..+|++|-.++|+.+.. .|...|.+
T Consensus 116 d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 116 DRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 34677777777766665 55666643
No 412
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=22.51 E-value=2.4e+02 Score=19.10 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=35.8
Q ss_pred HHhhCCCCCccceEEeccCC--ChHHHHHHHHHHhCCCCcceEEEcCeEEech
Q 034150 25 LFSSTNNKFLKSLHVLILEG--DGSKIQAALAEWTGQRTVPNVFIGGKHIGGC 75 (102)
Q Consensus 25 ~L~~~~i~~~~~~i~id~~~--~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~ 75 (102)
--+++|+.=+ -+.+|.-+ -..++.++++....-+.+-.+...|..+||-
T Consensus 105 EADRHNiRGE--RISvDTiPlVGEE~laEAVkAV~rLpRv~iLVLAGslMGGk 155 (218)
T COG1707 105 EADRHNIRGE--RISVDTIPLVGEEELAEAVKAVARLPRVGILVLAGSLMGGK 155 (218)
T ss_pred hhhhcccccc--eeeeecccccChHHHHHHHHHHhccccceeEEEecccccch
Confidence 4567888888 77777642 2367778888777666777778899999984
No 413
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=22.38 E-value=1.9e+02 Score=17.43 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=38.0
Q ss_pred CCceEEecCCCCHHHHH--HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEechHHHHHHHHCC
Q 034150 8 VNEACCPPLESCAFCLV--LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGG 85 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~--~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~l~~~~~~g 85 (102)
..+|++.-...|.+..+ ...+.|...- ++- +...++. ....+ .......+|.++|..+ .-+.|++..+.|
T Consensus 44 ~gkIvlv~rg~c~f~~K~~~A~~aGA~~v--Iv~-n~~~~~~-~~~~~-~~~~~~~Ip~v~Is~~---~G~~L~~~l~~g 115 (122)
T cd02130 44 AGNIALIERGECPFGDKSALAGAAGAAAA--IIY-NNVPAGG-LSGTL-GEPSGPYVPTVGISQE---DGKALVAALANG 115 (122)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCcEE--EEE-ECCCCcc-ccccc-CCCCCCEeeEEEecHH---HHHHHHHHHhcC
Confidence 56788888899999877 6777787654 322 2211100 01000 0012346788887653 234455555544
No 414
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=22.30 E-value=2.8e+02 Score=19.38 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.7
Q ss_pred cceEEEcCeEEechHHHHHHHHCCCcHHHHHhcCc
Q 034150 62 VPNVFIGGKHIGGCDTVVEKHQGGKLVPLLRDAGA 96 (102)
Q Consensus 62 vP~ifi~g~~igg~~~l~~~~~~g~L~~~l~~~g~ 96 (102)
.+.|..+|- ..+..+.++..++.|.++|++.|.
T Consensus 82 ~dvIIDngA--s~~~~l~~yl~~n~l~~ll~e~g~ 114 (241)
T PRK13886 82 GDVIIDNGA--SSFVPLSHYLISNQVPALLQDMGH 114 (241)
T ss_pred CCEEEECCC--cchHHHHHHHHhCcHHHHHHHCCc
Confidence 355655664 678889999999999999999886
No 415
>PF09248 DUF1965: Domain of unknown function (DUF1965); InterPro: IPR015328 Members of this family of fungal domains adopt a structure that consists of an alpha/beta motif. Their exact function has not, as yet, been determined []. ; PDB: 1N9E_A 1RKY_A 1W7C_A 3PGB_A.
Probab=22.15 E-value=1.7e+02 Score=16.74 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=22.5
Q ss_pred CcceEEEcCeEEechHHHHHHHHCCCcHHHHHhcC
Q 034150 61 TVPNVFIGGKHIGGCDTVVEKHQGGKLVPLLRDAG 95 (102)
Q Consensus 61 ~vP~ifi~g~~igg~~~l~~~~~~g~L~~~l~~~g 95 (102)
.+=-++-||++.-..+++++...+|++.++-....
T Consensus 26 kv~gw~Yn~~fy~tteeFr~A~~~~~f~k~~~n~d 60 (74)
T PF09248_consen 26 KVLGWVYNGQFYPTTEEFREAWWSGDFKKLGPNVD 60 (74)
T ss_dssp EEEEEEETTEEESSHHHHHHHHCSTT---------
T ss_pred EEEEEEECCEEcccHHHHHHHHhCCCceecCCCCC
Confidence 44556789999999999999999999988655443
No 416
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=22.07 E-value=1.9e+02 Score=18.29 Aligned_cols=15 Identities=13% Similarity=0.199 Sum_probs=10.0
Q ss_pred ceEEecCC---CCHHHHH
Q 034150 10 EACCPPLE---SCAFCLV 24 (102)
Q Consensus 10 ~vvvy~~~---~Cp~C~~ 24 (102)
++++|... .|++|..
T Consensus 17 r~~if~~gCnl~C~~C~n 34 (154)
T TIGR02491 17 RVSLFVAGCKHHCEGCFN 34 (154)
T ss_pred EEEEEECCCCCCCcCCCc
Confidence 56777643 3778876
No 417
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=22.07 E-value=49 Score=21.14 Aligned_cols=35 Identities=9% Similarity=0.006 Sum_probs=20.8
Q ss_pred CceEE--ecCCCCHHHHH---HHhhCC--C-CCc-cceEEeccC
Q 034150 9 NEACC--PPLESCAFCLV---LFSSTN--N-KFL-KSLHVLILE 43 (102)
Q Consensus 9 ~~vvv--y~~~~Cp~C~~---~L~~~~--i-~~~-~~~i~id~~ 43 (102)
.++++ |+.+|-|.|-+ +|.+.. + +|. ++.++++..
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~V 63 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEV 63 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTT
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccc
Confidence 45544 99999999999 554322 2 233 346666654
No 418
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=22.07 E-value=2.6e+02 Score=18.95 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=43.1
Q ss_pred cCCceEEecCCCC--HHHHHHHhhCCCCCccceEEecc------------CCC-hHHHHHHHHH---HhCCCCcceEE-E
Q 034150 7 FVNEACCPPLESC--AFCLVLFSSTNNKFLKSLHVLIL------------EGD-GSKIQAALAE---WTGQRTVPNVF-I 67 (102)
Q Consensus 7 ~~~~vvvy~~~~C--p~C~~~L~~~~i~~~~~~i~id~------------~~~-~~~~~~~l~~---~~g~~~vP~if-i 67 (102)
+..+|++|+-.+- ..|..+|+..|.-.- -||+.. +.+ ..+.+.-+.+ ..+...+-.|| +
T Consensus 2 sagrVivYGGkGALGSacv~~FkannywV~--siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~CV 79 (236)
T KOG4022|consen 2 SAGRVIVYGGKGALGSACVEFFKANNYWVL--SIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVFCV 79 (236)
T ss_pred CCceEEEEcCcchHhHHHHHHHHhcCeEEE--EEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcccccceEEEe
Confidence 3468999987653 345557776664333 222221 111 1112222222 23445565554 7
Q ss_pred cCeEEechHHHHHHHHCCCc
Q 034150 68 GGKHIGGCDTVVEKHQGGKL 87 (102)
Q Consensus 68 ~g~~igg~~~l~~~~~~g~L 87 (102)
.|-+-||...-+.+.++-+|
T Consensus 80 AGGWAGGnAksKdl~KNaDL 99 (236)
T KOG4022|consen 80 AGGWAGGNAKSKDLVKNADL 99 (236)
T ss_pred eccccCCCcchhhhhhchhh
Confidence 88899998777777766665
No 419
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=22.01 E-value=2.1e+02 Score=17.69 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=46.2
Q ss_pred ceEEecCCCCHHHHH-HHhhCCCCCc--cceEEeccC--CChHHHHHHHHHHhCCCCcceEEEcCe------EEechHHH
Q 034150 10 EACCPPLESCAFCLV-LFSSTNNKFL--KSLHVLILE--GDGSKIQAALAEWTGQRTVPNVFIGGK------HIGGCDTV 78 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~-~L~~~~i~~~--~~~i~id~~--~~~~~~~~~l~~~~g~~~vP~ifi~g~------~igg~~~l 78 (102)
+|++|.=.||+|-.. ......+.|. ...|.+.=. -+...+..+|.+ ..--|++-|- +..|....
T Consensus 1 kIl~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~-----GADGV~V~gC~~g~Ch~~~Gn~~a 75 (124)
T PF02662_consen 1 KILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEK-----GADGVLVAGCHPGDCHYREGNYRA 75 (124)
T ss_pred CEEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHc-----CCCEEEEeCCCCCCCCcchhhHHH
Confidence 688999999999887 5554444443 124444322 233444555543 3445666442 34455444
Q ss_pred HHHHHCCCcHHHHHhcCch
Q 034150 79 VEKHQGGKLVPLLRDAGAL 97 (102)
Q Consensus 79 ~~~~~~g~L~~~l~~~g~~ 97 (102)
.+-. ..++++|++.|.-
T Consensus 76 ~~Rv--~~~k~~L~~~Gi~ 92 (124)
T PF02662_consen 76 EKRV--ERLKKLLEELGIE 92 (124)
T ss_pred HHHH--HHHHHHHHHcCCC
Confidence 4433 4788888888874
No 420
>PRK14367 Maf-like protein; Provisional
Probab=21.95 E-value=1.9e+02 Score=19.61 Aligned_cols=28 Identities=0% Similarity=-0.121 Sum_probs=18.7
Q ss_pred ceEEecCCCCHHHHHHHhhCCCCCccceEEec
Q 034150 10 EACCPPLESCAFCLVLFSSTNNKFLKSLHVLI 41 (102)
Q Consensus 10 ~vvvy~~~~Cp~C~~~L~~~~i~~~~~~i~id 41 (102)
++++=+ ..|.-+.+|++.|++|+ .+.-+
T Consensus 3 ~iILAS--~SprR~eLL~~~Gi~f~--v~~~~ 30 (202)
T PRK14367 3 TLYLGS--NSPRRMEILTQLGYRVV--KLPAG 30 (202)
T ss_pred CEEEeC--CCHHHHHHHHHCCCCeE--EECCC
Confidence 455444 44666669999999998 55433
No 421
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=21.84 E-value=60 Score=21.46 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=15.6
Q ss_pred CCCcceEEEcCeEEechHH
Q 034150 59 QRTVPNVFIGGKHIGGCDT 77 (102)
Q Consensus 59 ~~~vP~ifi~g~~igg~~~ 77 (102)
...-|.+.|||+.+|+.+.
T Consensus 139 C~~AP~~~Vn~~~~~~lt~ 157 (169)
T PRK07571 139 CGIAPAVVFDGKVAGKQTP 157 (169)
T ss_pred cCCCCeEEECCEEeCCCCH
Confidence 4567999999999988753
No 422
>PRK01839 Maf-like protein; Reviewed
Probab=21.84 E-value=2.4e+02 Score=19.21 Aligned_cols=30 Identities=10% Similarity=-0.031 Sum_probs=20.4
Q ss_pred ccCCceEEecCCCCHHHHHHHhhCCCCCccceEE
Q 034150 6 VFVNEACCPPLESCAFCLVLFSSTNNKFLKSLHV 39 (102)
Q Consensus 6 i~~~~vvvy~~~~Cp~C~~~L~~~~i~~~~~~i~ 39 (102)
....++++=|. .|.-+.+|++.|++|+ .+.
T Consensus 7 ~~~~~lILAS~--SprR~elL~~~gi~f~--v~~ 36 (209)
T PRK01839 7 PLFPFLYLASQ--SPRRQELLQQLGVRFE--LLL 36 (209)
T ss_pred ccCCCEEEeCC--CHHHHHHHHHCCCCeE--EeC
Confidence 34556665554 4665559999999998 663
No 423
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.74 E-value=70 Score=23.53 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=11.2
Q ss_pred eEEecC----CCCHHHHH
Q 034150 11 ACCPPL----ESCAFCLV 24 (102)
Q Consensus 11 vvvy~~----~~Cp~C~~ 24 (102)
|++|+. ..|+-|+.
T Consensus 64 IvmftA~~~~~~C~lC~~ 81 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQ 81 (331)
T ss_pred EEEccccCCCCcCchhhh
Confidence 677876 46999998
No 424
>PF06224 HTH_42: Winged helix DNA-binding domain; InterPro: IPR009351 This is a family of conserved bacterial proteins with unknown function.
Probab=21.71 E-value=92 Score=22.10 Aligned_cols=19 Identities=37% Similarity=0.833 Sum_probs=14.6
Q ss_pred CCCCcceEEEcCeEEechH
Q 034150 58 GQRTVPNVFIGGKHIGGCD 76 (102)
Q Consensus 58 g~~~vP~ifi~g~~igg~~ 76 (102)
|....|.|++||+.+|..+
T Consensus 274 g~~~~~~vL~~g~vvG~w~ 292 (327)
T PF06224_consen 274 GKRKPPPVLVGGRVVGTWR 292 (327)
T ss_pred CccccceEEECCEEEEEEE
Confidence 3333799999999999764
No 425
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=21.68 E-value=2.6e+02 Score=21.50 Aligned_cols=65 Identities=17% Similarity=0.074 Sum_probs=41.8
Q ss_pred EEecCCCCHHHHH-HHhhCCCCCccceEEeccC---CChHHHHHHHHHHhCCCCcc--eEEEcC-eEEechHHHHHHH
Q 034150 12 CCPPLESCAFCLV-LFSSTNNKFLKSLHVLILE---GDGSKIQAALAEWTGQRTVP--NVFIGG-KHIGGCDTVVEKH 82 (102)
Q Consensus 12 vvy~~~~Cp~C~~-~L~~~~i~~~~~~i~id~~---~~~~~~~~~l~~~~g~~~vP--~ifi~g-~~igg~~~l~~~~ 82 (102)
.|+....+.+|.. ...-.|+... .+.++.. -|...+.+.+.+ .+.+ .|-+-| ...|..|++.++.
T Consensus 159 ~ii~s~~aH~s~~Kaa~~lG~~~~--~v~~~~~~~~id~~~l~~~i~~----~t~~g~vV~~aGtT~~G~iDdi~~ia 230 (460)
T COG0076 159 NIVCSETAHFSFEKAARYLGLGLR--RVPTVPTDYRIDVDALEEAIDE----NTIGGVVVGTAGTTDTGSIDDIEELA 230 (460)
T ss_pred eEEecCcchhHHHHHHHHhCCCce--eEEeccCccccCHHHHHHHHHh----hccCceEEEEecCCCCCccCCHHHHH
Confidence 5666688999999 7788888888 6666652 233444555544 3444 444444 5678888876654
No 426
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=21.38 E-value=44 Score=25.28 Aligned_cols=12 Identities=50% Similarity=0.977 Sum_probs=9.5
Q ss_pred CCcceEEEcCeE
Q 034150 60 RTVPNVFIGGKH 71 (102)
Q Consensus 60 ~~vP~ifi~g~~ 71 (102)
.-||+|||||.+
T Consensus 74 APVlTIFIGGNH 85 (456)
T KOG2863|consen 74 APVLTIFIGGNH 85 (456)
T ss_pred CceeEEEecCch
Confidence 567899999864
No 427
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=21.35 E-value=75 Score=23.48 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=27.6
Q ss_pred EecCCCCHHHHH-----HHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEE
Q 034150 13 CPPLESCAFCLV-----LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVF 66 (102)
Q Consensus 13 vy~~~~Cp~C~~-----~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~if 66 (102)
=|.+.+||.|.+ +|+.-+-+-. ++...-+..-.+..+.+-.+..-+|.++
T Consensus 284 pf~t~gC~~cnRP~~n~~~e~p~r~~~----n~kkyi~~~m~k~~~~k~~~~~l~~~~~ 338 (339)
T COG2516 284 PFRTRGCPGCNRPYPNFMFELPGREPY----NIKKYISSEMAKAGCEKCKRCSLLPTVA 338 (339)
T ss_pred ccccCCCCCCCCCCcchHhhccCCccc----cccccCCHHHHHHHHHhhcchhcccccc
Confidence 366788999999 4454443333 2221112133345556666677777664
No 428
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=21.16 E-value=3.2e+02 Score=20.07 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=27.3
Q ss_pred CceEEecCCCCHHHHHHHhhCCCCCccceEEeccCCChHHHHHHHHHHhCCCCcceEEEcC
Q 034150 9 NEACCPPLESCAFCLVLFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTGQRTVPNVFIGG 69 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g 69 (102)
...++|-.+--.++..++++.|++.. -+-+...+.+.+.......+.....+..|++|-
T Consensus 81 g~~~a~ID~e~~ld~~~a~~lGvdl~--rllv~~P~~~E~al~~~e~lirsg~~~lVVvDS 139 (322)
T PF00154_consen 81 GGICAFIDAEHALDPEYAESLGVDLD--RLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDS 139 (322)
T ss_dssp T-EEEEEESSS---HHHHHHTT--GG--GEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-
T ss_pred cceeEEecCcccchhhHHHhcCcccc--ceEEecCCcHHHHHHHHHHHhhcccccEEEEec
Confidence 44555555544455558888899876 222222223344444444444445666777764
No 429
>PRK14368 Maf-like protein; Provisional
Probab=20.92 E-value=1.7e+02 Score=19.68 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=20.4
Q ss_pred CCceEEecCCCCHHHHHHHhhCCCCCccceEEecc
Q 034150 8 VNEACCPPLESCAFCLVLFSSTNNKFLKSLHVLIL 42 (102)
Q Consensus 8 ~~~vvvy~~~~Cp~C~~~L~~~~i~~~~~~i~id~ 42 (102)
+.++++=| ..|.-+.+|++.|++|+ .+.-+.
T Consensus 4 ~~~lILAS--~SprR~eLL~~~g~~f~--v~~~~i 34 (193)
T PRK14368 4 NSPIVLAS--ASPRRSELLASAGIEFD--VVPADI 34 (193)
T ss_pred CCcEEEeC--CCHHHHHHHHHCCCCeE--EEcCCC
Confidence 34555544 44766669999999998 554433
No 430
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=20.90 E-value=2.3e+02 Score=18.85 Aligned_cols=30 Identities=13% Similarity=-0.038 Sum_probs=19.5
Q ss_pred CceEEecCCCCHHHHHHHhhCCCCCccceEEecc
Q 034150 9 NEACCPPLESCAFCLVLFSSTNNKFLKSLHVLIL 42 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~~L~~~~i~~~~~~i~id~ 42 (102)
+++++=| ..|.-+.+|++.|++|+ .+.-+.
T Consensus 3 ~~lILAS--~SprR~elL~~~g~~f~--v~~~~i 32 (183)
T TIGR00172 3 KELILAS--QSPRRKELLEELGISFE--QIVSEF 32 (183)
T ss_pred CCEEEeC--CCHHHHHHHHHCCCCeE--EEcCCC
Confidence 3455544 34655559999999998 554443
No 431
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=20.81 E-value=59 Score=21.04 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=13.1
Q ss_pred EEechHHHHHHHHCCCcHH
Q 034150 71 HIGGCDTVVEKHQGGKLVP 89 (102)
Q Consensus 71 ~igg~~~l~~~~~~g~L~~ 89 (102)
.--|+|++.+++-+|+|.+
T Consensus 91 rP~Gyd~l~~lvm~G~L~d 109 (143)
T PF07827_consen 91 RPSGYDELAQLVMSGQLTD 109 (143)
T ss_dssp --TTHHHHHHHHHHTB---
T ss_pred CCccHHHHHHHHhccccCC
Confidence 3468999999999998854
No 432
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=20.70 E-value=80 Score=17.76 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=13.7
Q ss_pred CCcceEEEcCeEEechH
Q 034150 60 RTVPNVFIGGKHIGGCD 76 (102)
Q Consensus 60 ~~vP~ifi~g~~igg~~ 76 (102)
..-|.+.|||+++++.+
T Consensus 53 ~~gP~~~v~~~~~~~~~ 69 (80)
T cd03081 53 ACSPAAMIDGEVHGRVD 69 (80)
T ss_pred CCCCEEEECCEEECCCC
Confidence 45699999999887653
No 433
>KOG3490 consensus Transcription elongation factor SPT4 [Transcription]
Probab=20.68 E-value=55 Score=20.10 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=15.4
Q ss_pred eEEecCCCCHHHHHHHhhCCC
Q 034150 11 ACCPPLESCAFCLVLFSSTNN 31 (102)
Q Consensus 11 vvvy~~~~Cp~C~~~L~~~~i 31 (102)
+-.|-+++|+.|. +|+..|-
T Consensus 20 ~~~F~~dGC~Nc~-~l~mkgn 39 (111)
T KOG3490|consen 20 LNGFRKDGCENCP-MLNMKGN 39 (111)
T ss_pred hhhhhhcCCCCch-hhhhccC
Confidence 3458889999999 7777663
No 434
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=20.55 E-value=3.2e+02 Score=19.29 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=24.9
Q ss_pred eEEecCCCCHHHHH----------HHhhCCC-CCccceEEeccCCChHH-HHHHHHHH
Q 034150 11 ACCPPLESCAFCLV----------LFSSTNN-KFLKSLHVLILEGDGSK-IQAALAEW 56 (102)
Q Consensus 11 vvvy~~~~Cp~C~~----------~L~~~~i-~~~~~~i~id~~~~~~~-~~~~l~~~ 56 (102)
||-+-...|.+|.. -|++.|. +.. ++-|+.....+. +..+|+.+
T Consensus 30 vVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~--f~vVN~~~~~s~~~~~~l~~r 85 (238)
T PF04592_consen 30 VVALLQASCYFCLLQASRLEDLREKLENEGLSNIS--FMVVNHQGEHSRLKYWELKRR 85 (238)
T ss_pred eeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceE--EEEEcCCCcchhHHHHHHHHh
Confidence 44466789999998 4455565 344 555555432233 33455553
No 435
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=20.47 E-value=3.5e+02 Score=19.92 Aligned_cols=72 Identities=6% Similarity=-0.051 Sum_probs=40.6
Q ss_pred CceEEecCCCCHHHHH---HHhhCCCCCccceE----------EeccCCChHHHHHHHHHHhCCCCcceEEEcCeEEech
Q 034150 9 NEACCPPLESCAFCLV---LFSSTNNKFLKSLH----------VLILEGDGSKIQAALAEWTGQRTVPNVFIGGKHIGGC 75 (102)
Q Consensus 9 ~~vvvy~~~~Cp~C~~---~L~~~~i~~~~~~i----------~id~~~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~ 75 (102)
.=+-||+-+.|.-... +.+...|+|- .. .+...++-...-..+-+..||+.+=.++.+..-++..
T Consensus 63 GV~AIfGp~~~~s~~~v~s~c~~~~iP~i--~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~~~Wr~~~~iYd~d~gl~~L 140 (372)
T cd06387 63 GVYAIFGFYDQMSMNTLTSFCGALHTSFI--TPSFPTDADVQFVIQMRPALKGAILSLLAHYKWEKFVYLYDTERGFSIL 140 (372)
T ss_pred ccEEEEecCCHhHHHHHHHhhccccCCee--eeCCCCCCCCceEEEEChhHHHHHHHHHHhcCCCEEEEEecCchhHHHH
Confidence 3456777776655444 7778888775 22 2222222122222233457999998888666655555
Q ss_pred HHHHHHH
Q 034150 76 DTVVEKH 82 (102)
Q Consensus 76 ~~l~~~~ 82 (102)
.+|.+..
T Consensus 141 q~L~~~~ 147 (372)
T cd06387 141 QAIMEAA 147 (372)
T ss_pred HHHHHhh
Confidence 5554444
No 436
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=20.19 E-value=86 Score=19.72 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=15.3
Q ss_pred hCCCCcceEEEcCeEEech
Q 034150 57 TGQRTVPNVFIGGKHIGGC 75 (102)
Q Consensus 57 ~g~~~vP~ifi~g~~igg~ 75 (102)
.|....-.|++||+.||..
T Consensus 92 ~gv~~~a~v~vNG~~vg~~ 110 (167)
T PF02837_consen 92 EGVDYAAEVYVNGKLVGSH 110 (167)
T ss_dssp SEEESEEEEEETTEEEEEE
T ss_pred ccceEeeEEEeCCeEEeee
Confidence 4566778999999999864
No 437
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=20.10 E-value=76 Score=20.12 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=13.7
Q ss_pred CCcceEEEcCeEEechH
Q 034150 60 RTVPNVFIGGKHIGGCD 76 (102)
Q Consensus 60 ~~vP~ifi~g~~igg~~ 76 (102)
..-|.+.|||++.+..+
T Consensus 117 ~~aP~v~V~~~~y~~vt 133 (145)
T PF01257_consen 117 DQAPVVMVDGEWYGNVT 133 (145)
T ss_dssp GGSSEEEECCCEEESSS
T ss_pred CCCCEEEECCEEECCCC
Confidence 34699999999998764
No 438
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=20.01 E-value=2e+02 Score=18.04 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=28.0
Q ss_pred HHhhCCCCCccceEEeccCCChHHHHHHHHHHhC-CCCcceE
Q 034150 25 LFSSTNNKFLKSLHVLILEGDGSKIQAALAEWTG-QRTVPNV 65 (102)
Q Consensus 25 ~L~~~~i~~~~~~i~id~~~~~~~~~~~l~~~~g-~~~vP~i 65 (102)
.|.+.++... -+-+|..+ +.+..-|++.+| ..++||.
T Consensus 71 ML~~e~~~p~--~~a~DrPS--~Kll~Fl~Khy~L~~~ipQ~ 108 (120)
T PF05301_consen 71 MLQEENVSPH--QLAIDRPS--PKLLSFLKKHYGLQRYIPQS 108 (120)
T ss_pred HHHHcCCCcc--cceecCCc--HHHHHHHHHhcCCCcCCCCC
Confidence 7778888877 66667653 788888988887 5788875
Done!