BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034153
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38389|SC61B_ARATH Protein transport protein Sec61 subunit beta OS=Arabidopsis
thaliana GN=At2g45070 PE=3 SV=1
Length = 82
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 57/77 (74%), Gaps = 3/77 (3%)
Query: 23 RGSAAATAGMRRRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCF 82
RGSAAATA MRRR+ T +G G S GA+ +ML+FYTDDAPGLKISP VVL+MS+ F
Sbjct: 9 RGSAAATASMRRRKPTSGAGGGGAS---GGAAGSMLQFYTDDAPGLKISPNVVLIMSIGF 65
Query: 83 IGFVTALHVFGKLYRHK 99
I FV LHV GKLY K
Sbjct: 66 IAFVAVLHVMGKLYFVK 82
>sp|Q9HFC7|SC61B_YARLI Protein transport protein Sec61 subunit beta OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1
Length = 91
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 47 SVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKL 95
SVG G+S+ ML+ YTD++ GLK+ P VV+++SL FI V ALH+ K+
Sbjct: 37 SVGAGGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAKV 85
>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 subunit beta OS=Mus musculus
GN=Sec61b PE=1 SV=3
Length = 96
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 34 RRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
R+R S G S + + M RFYT+D+PGLK+ P VL+MSL FI V LH++G
Sbjct: 32 RQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIAAVFMLHIWG 91
Query: 94 KLYR 97
K R
Sbjct: 92 KYTR 95
>sp|Q5RB31|SC61B_PONAB Protein transport protein Sec61 subunit beta OS=Pongo abelii
GN=SEC61B PE=3 SV=3
Length = 96
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 34 RRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
R+R S G S + + M RFYT+D+PGLK+ P VL+MSL FI V LH++G
Sbjct: 32 RQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWG 91
Query: 94 KLYR 97
K R
Sbjct: 92 KYTR 95
>sp|P60468|SC61B_HUMAN Protein transport protein Sec61 subunit beta OS=Homo sapiens
GN=SEC61B PE=1 SV=2
Length = 96
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 34 RRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
R+R S G S + + M RFYT+D+PGLK+ P VL+MSL FI V LH++G
Sbjct: 32 RQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWG 91
Query: 94 KLYR 97
K R
Sbjct: 92 KYTR 95
>sp|P60467|SC61B_CANFA Protein transport protein Sec61 subunit beta OS=Canis familiaris
GN=SEC61B PE=1 SV=2
Length = 96
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 34 RRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
R+R S G S + + M RFYT+D+PGLK+ P VL+MSL FI V LH++G
Sbjct: 32 RQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWG 91
Query: 94 KLYR 97
K R
Sbjct: 92 KYTR 95
>sp|Q54YR4|SC61B_DICDI Protein transport protein Sec61 subunit beta OS=Dictyostelium
discoideum GN=sec61b PE=3 SV=1
Length = 61
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 31/42 (73%)
Query: 56 NMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYR 97
+M++FY++DA GLK+ PT VL MSL FI FV LH+ GK R
Sbjct: 19 SMMKFYSEDAIGLKVGPTAVLFMSLIFIAFVIILHIMGKYTR 60
>sp|Q8J2P4|SC61B_KLULA Protein transport protein Sec61 subunit beta OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SBH1 PE=3 SV=1
Length = 88
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 29 TAGMRRRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTA 88
A +++ + + G G+S+++L+ YTD+A GL++ P VVL +++ F+ V A
Sbjct: 17 NAQLQKEKKANQTPASPRQAGFGGSSSSILKLYTDEANGLRVDPLVVLFLAVAFVFSVVA 76
Query: 89 LHVFGKL 95
LHV K+
Sbjct: 77 LHVVAKV 83
>sp|P52870|SC6B1_YEAST Protein transport protein SBH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SBH1 PE=1 SV=1
Length = 82
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 34 RRRVTGSSGNGSGSVGGAGASTN--MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHV 91
++R GSS + S ++N +L+ Y+D+A GL++ P VVL +++ FI V ALHV
Sbjct: 14 QKRKQGSSQKVAASAPKKNTNSNNSILKIYSDEATGLRVDPLVVLFLAVGFIFSVVALHV 73
Query: 92 FGKL 95
K+
Sbjct: 74 ISKV 77
>sp|O43002|SC61B_SCHPO Protein transport protein sec61 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sbh1 PE=3 SV=1
Length = 102
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRH 98
+L+ YTD+A G K+ P VV+++S+ FI V LH+ ++ +
Sbjct: 57 LLKLYTDEASGFKVDPVVVMVLSVGFIASVFLLHIVARILKK 98
>sp|P52871|SC6B2_YEAST Protein transport protein SBH2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SBH2 PE=1 SV=1
Length = 88
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 49 GGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKL 95
G G+S+++L+ YTD+A G ++ VVL +S+ FI V ALH+ K
Sbjct: 38 GYGGSSSSILKLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKF 84
>sp|Q5JDK7|SECG_PYRKO Preprotein translocase subunit SecG OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=secG PE=3
SV=1
Length = 56
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
++RF+ +D +K+SP V+ ++L I F LH+FG
Sbjct: 15 LMRFFDEDTRAVKVSPKGVIALTLLLIAFEFILHMFG 51
>sp|C5A4H9|SECG_THEGJ Preprotein translocase subunit SecG OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=secG PE=3 SV=1
Length = 56
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
++RF+ +D +K+SP V+ + L I F LH+FG
Sbjct: 15 LMRFFDEDTRAIKVSPKGVIAIVLVLIAFEVFLHLFG 51
>sp|B6YW71|SECG_THEON Preprotein translocase subunit SecG OS=Thermococcus onnurineus
(strain NA1) GN=secG PE=3 SV=1
Length = 56
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
++RF+ +D +KISP V+ ++L + LH FG
Sbjct: 15 LMRFFDEDTKAVKISPRGVIALTLILVALEILLHAFG 51
>sp|P54278|PMS2_HUMAN Mismatch repair endonuclease PMS2 OS=Homo sapiens GN=PMS2 PE=1 SV=2
Length = 862
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 3 RGSSQSSTSSATSRPGVVAPRGSAAATAG-----MRRRRVTGSSGNGSGSVGGAGAS 54
RG SSTS A S GV+ P+ A +++ R V SG+GS SV G S
Sbjct: 451 RGMLSSSTSGAISDKGVLRPQKEAVSSSHGPSDPTDRAEVEKDSGHGSTSVDSEGFS 507
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 2 ARGSSQSSTSSATSRPGVVAPRGSAAATAGMRRRRVTGSSGNGSGSVGGAGA-STNMLRF 60
A + + +T+R G RG + G R + G G GAGA +N +F
Sbjct: 548 APSKTDNGRGGSTARGG----RGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKF 603
Query: 61 YTDDAPGLKISPTVV 75
+T D P K P +V
Sbjct: 604 FTQDGPSKKTWPEIV 618
>sp|Q4UJ67|CYB_THEAN Cytochrome b OS=Theileria annulata GN=MT-CYB PE=3 SV=1
Length = 363
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
ML F+ A G+ T+ +++++CF FV H FG
Sbjct: 40 MLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 76
>sp|Q91WM3|U3IP2_MOUSE U3 small nucleolar RNA-interacting protein 2 OS=Mus musculus
GN=Rrp9 PE=1 SV=1
Length = 475
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 9 STSSATSRPGVVAPRGSAAATAGMRRRRVTGSSGNGSGSVGG 50
ST+ AT + AP AA AG RRR+V ++ G GG
Sbjct: 2 STAVATRKRAKPAPGPGAAPVAGKRRRKVDSAADRGKSKGGG 43
>sp|A7TE38|RGT1_VANPO Glucose transport transcription regulator RGT1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=RGT1 PE=3
SV=1
Length = 958
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 24 GSAAATAGMRRRRVTGSSGNGSGSVGGAGAS 54
GSA +TA +R + S+G+ GS+GG A+
Sbjct: 42 GSATSTAAPGKRSRSSSTGSAKGSIGGKKAT 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,565,507
Number of Sequences: 539616
Number of extensions: 1288794
Number of successful extensions: 10861
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 10044
Number of HSP's gapped (non-prelim): 804
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)