Query 034153
Match_columns 102
No_of_seqs 144 out of 248
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:21:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3457 Sec61 protein transloc 100.0 3E-30 6.4E-35 177.6 5.0 77 23-99 8-87 (88)
2 PF03911 Sec61_beta: Sec61beta 99.8 1.1E-20 2.4E-25 113.8 0.6 41 53-93 1-41 (41)
3 PRK01253 preprotein translocas 99.8 7.6E-20 1.6E-24 116.1 3.7 46 49-94 8-53 (54)
4 COG4023 SBH1 Preprotein transl 99.1 3.7E-11 8.1E-16 77.5 1.6 41 54-94 15-56 (57)
5 PF06692 MNSV_P7B: Melon necro 63.5 2.3 5E-05 27.8 -0.0 25 63-87 7-31 (61)
6 PRK13460 F0F1 ATP synthase sub 56.9 5.7 0.00012 29.1 1.1 26 67-92 11-36 (173)
7 PF15298 AJAP1_PANP_C: AJAP1/P 56.0 9.4 0.0002 30.3 2.2 47 56-102 84-130 (205)
8 PRK07352 F0F1 ATP synthase sub 55.8 7.1 0.00015 28.5 1.4 38 56-93 3-40 (174)
9 PF00737 PsbH: Photosystem II 48.9 5.3 0.00012 25.5 -0.1 33 61-93 15-47 (52)
10 PRK14472 F0F1 ATP synthase sub 48.3 7.4 0.00016 28.5 0.5 24 69-92 15-38 (175)
11 PRK07353 F0F1 ATP synthase sub 46.9 12 0.00027 25.9 1.5 22 70-92 4-25 (140)
12 PRK13453 F0F1 ATP synthase sub 43.8 9.8 0.00021 28.0 0.6 25 68-92 14-38 (173)
13 PRK14473 F0F1 ATP synthase sub 41.0 12 0.00025 27.0 0.6 25 68-92 4-28 (164)
14 CHL00066 psbH photosystem II p 39.1 15 0.00032 25.0 0.8 33 61-93 30-62 (73)
15 COG1687 AzlD Predicted branche 38.6 30 0.00065 24.9 2.4 38 56-95 49-86 (106)
16 PLN00055 photosystem II reacti 38.5 16 0.00034 24.8 0.8 33 61-93 30-62 (73)
17 PF12606 RELT: Tumour necrosis 38.3 38 0.00082 21.2 2.5 19 74-92 3-21 (50)
18 PRK02624 psbH photosystem II r 36.6 16 0.00035 24.2 0.7 34 61-94 18-51 (64)
19 PF15052 TMEM169: TMEM169 prot 35.8 15 0.00032 27.4 0.5 40 56-95 45-87 (133)
20 PRK08476 F0F1 ATP synthase sub 35.6 15 0.00033 26.2 0.5 23 68-90 3-25 (141)
21 PF12273 RCR: Chitin synthesis 34.2 25 0.00053 24.7 1.3 16 76-91 8-23 (130)
22 PF06387 Calcyon: D1 dopamine 32.6 22 0.00048 27.8 1.0 33 57-91 71-103 (186)
23 PRK14474 F0F1 ATP synthase sub 32.5 18 0.0004 28.4 0.5 24 69-92 2-25 (250)
24 PRK13461 F0F1 ATP synthase sub 31.1 19 0.00041 25.8 0.3 23 70-92 3-25 (159)
25 PF05393 Hum_adeno_E3A: Human 30.8 39 0.00085 23.9 1.9 35 61-99 26-60 (94)
26 PF10679 DUF2491: Protein of u 30.1 19 0.00042 28.3 0.3 19 52-70 61-79 (212)
27 KOG2678 Predicted membrane pro 30.0 33 0.00072 27.9 1.6 22 74-95 222-243 (244)
28 PF12911 OppC_N: N-terminal TM 29.8 60 0.0013 19.1 2.4 19 77-95 19-37 (56)
29 PF15048 OSTbeta: Organic solu 29.2 26 0.00057 25.8 0.8 15 57-71 23-38 (125)
30 PRK14471 F0F1 ATP synthase sub 28.7 25 0.00054 25.3 0.6 21 72-92 8-28 (164)
31 PF08114 PMP1_2: ATPase proteo 27.4 80 0.0017 19.5 2.6 17 74-90 10-26 (43)
32 PF01561 Hanta_G2: Hantavirus 27.0 57 0.0012 28.9 2.6 28 73-100 457-484 (485)
33 PRK09174 F0F1 ATP synthase sub 26.7 32 0.00069 26.4 0.9 21 72-92 53-73 (204)
34 PF11174 DUF2970: Protein of u 26.0 51 0.0011 20.8 1.6 26 61-88 21-46 (56)
35 PF07406 NICE-3: NICE-3 protei 25.7 69 0.0015 24.6 2.6 21 73-94 12-32 (186)
36 KOG1094 Discoidin domain recep 24.7 56 0.0012 30.5 2.2 28 71-98 388-415 (807)
37 PF12575 DUF3753: Protein of u 24.2 47 0.001 22.4 1.3 17 75-91 50-66 (72)
38 PRK13454 F0F1 ATP synthase sub 23.5 38 0.00083 25.1 0.8 20 72-91 31-50 (181)
39 PF04971 Lysis_S: Lysis protei 23.2 65 0.0014 21.5 1.8 40 54-99 18-61 (68)
40 PF06103 DUF948: Bacterial pro 22.6 65 0.0014 20.9 1.7 17 75-91 3-19 (90)
41 KOG0812 SNARE protein SED5/Syn 22.4 19 0.00042 30.1 -1.0 16 50-65 271-286 (311)
42 PF13908 Shisa: Wnt and FGF in 22.2 1E+02 0.0022 22.4 2.9 6 94-99 102-107 (179)
43 PRK05759 F0F1 ATP synthase sub 22.2 61 0.0013 22.7 1.6 19 74-92 6-24 (156)
44 PF10746 Phage_holin_6: Phage 21.8 55 0.0012 21.8 1.2 29 74-102 36-64 (66)
45 PF07219 HemY_N: HemY protein 21.4 67 0.0015 21.7 1.7 22 75-96 16-37 (108)
46 PF09753 Use1: Membrane fusion 21.3 43 0.00093 25.9 0.7 9 30-38 116-124 (251)
47 TIGR02839 spore_V_AE stage V s 21.3 28 0.00061 25.2 -0.3 37 55-98 16-52 (114)
48 PHA02975 hypothetical protein; 20.4 55 0.0012 22.0 1.0 27 66-92 37-63 (69)
49 PF04277 OAD_gamma: Oxaloaceta 20.4 98 0.0021 19.5 2.2 23 75-97 9-34 (79)
50 PF10669 Phage_Gp23: Protein g 20.3 89 0.0019 22.8 2.1 19 76-94 17-35 (121)
51 CHL00118 atpG ATP synthase CF0 20.1 70 0.0015 23.0 1.6 20 73-92 23-42 (156)
52 TIGR03321 alt_F1F0_F0_B altern 20.1 41 0.00089 25.9 0.4 23 70-92 3-25 (246)
No 1
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-30 Score=177.62 Aligned_cols=77 Identities=52% Similarity=0.821 Sum_probs=66.1
Q ss_pred CCCccccccceeeecCC---CCCCCCCCCCCCCchhhhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhhhccccc
Q 034153 23 RGSAAATAGMRRRRVTG---SSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHK 99 (102)
Q Consensus 23 r~~aaa~~~~rrr~~~~---~~~~~~~~~~~~~SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~Kl~~~~ 99 (102)
++++++++++|||+... ++..++++.|.++++.+|||||+||++||||||++||+|||+||++|++||||+||++.+
T Consensus 8 Pg~a~~~~~~Rqrk~~~~a~~~pa~~raaG~~~~t~~mlkfYTDda~GlKV~PvvVLvmSvgFIasV~~LHi~gK~~~~~ 87 (88)
T KOG3457|consen 8 PGGAAATAGRRQRKSGKEAGGGPASGRAAGAGGSTGGMLKFYTDDAPGLKVDPVVVLVMSVGFIASVFALHIWGKLTRSK 87 (88)
T ss_pred CCchhhHHHHHhccccccccCCccccCcCCCCCCCCceeEEeecCCCCceeCCeeehhhhHHHHHHHHHHHHHHHHhhcc
Confidence 38888899999998762 223333444667899999999999999999999999999999999999999999999876
No 2
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=99.79 E-value=1.1e-20 Score=113.75 Aligned_cols=41 Identities=49% Similarity=1.005 Sum_probs=25.3
Q ss_pred chhhhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhh
Q 034153 53 ASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93 (102)
Q Consensus 53 SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~ 93 (102)
|++||+||||||++|+||+|++||+++++||++|++||+++
T Consensus 1 Ssagl~r~y~ed~~giki~P~~Vl~~si~fi~~V~~Lhi~~ 41 (41)
T PF03911_consen 1 SSAGLLRYYEEDAPGIKIDPKTVLIISIAFIAIVILLHIFA 41 (41)
T ss_dssp ------------S-SS-BSCCHHHHHHHHHHHHHHHHT-SS
T ss_pred CCCcceeeeeccCCcceeCCeehHHHHHHHHHHHHHHhhhC
Confidence 68999999999999999999999999999999999999985
No 3
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=99.79 E-value=7.6e-20 Score=116.13 Aligned_cols=46 Identities=26% Similarity=0.533 Sum_probs=43.5
Q ss_pred CCCCchhhhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhhh
Q 034153 49 GGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGK 94 (102)
Q Consensus 49 ~~~~SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~K 94 (102)
+..+|++||+||||||.+||||+|++||+++++||++|++||++..
T Consensus 8 ~g~~ssAGL~ryy~ed~~~iKi~P~~Vi~~~~~~~~~v~~L~~~~~ 53 (54)
T PRK01253 8 GGLMSSAGLIRYFEEETEAIKIDPKTVIAIGLALGIFVLVLNALFP 53 (54)
T ss_pred CCCcccchhhhhhhcccCccccCCeeeeeeHHHHHHHHHHHHhhcC
Confidence 4589999999999999999999999999999999999999999865
No 4
>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]
Probab=99.08 E-value=3.7e-11 Score=77.53 Aligned_cols=41 Identities=24% Similarity=0.576 Sum_probs=38.2
Q ss_pred hhhhhhhhccCCCc-eeecCeEEehhHHHHHHHHHHHHhhhh
Q 034153 54 STNMLRFYTDDAPG-LKISPTVVLLMSLCFIGFVTALHVFGK 94 (102)
Q Consensus 54 sagLlRfYtdd~~g-iKV~P~~VLi~Sl~FI~~VilLHi~~K 94 (102)
++||+||||||+.+ |||||..|+.+++.+++.|++.|++.+
T Consensus 15 ~AGLi~f~eEee~~~ikidP~~vV~~~~av~~lvi~A~~f~p 56 (57)
T COG4023 15 AAGLIRFFEEEEIKGIKIDPRLVVYAGIAVAILVIAAHIFAP 56 (57)
T ss_pred ccceeeeecccccCCcccCchhhHHHHHHHHHHHHHHHHhcC
Confidence 89999999977776 999999999999999999999999864
No 5
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=63.53 E-value=2.3 Score=27.85 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=21.3
Q ss_pred cCCCceeecCeEEehhHHHHHHHHH
Q 034153 63 DDAPGLKISPTVVLLMSLCFIGFVT 87 (102)
Q Consensus 63 dd~~giKV~P~~VLi~Sl~FI~~Vi 87 (102)
|+.||=-..|..||++++.|+.+-+
T Consensus 7 ~~~p~d~~~~lLiliis~~f~lI~~ 31 (61)
T PF06692_consen 7 DSAPGDYSGPLLILIISFVFFLITS 31 (61)
T ss_pred CCCCccchhHHHHHHHHHHHHHHhh
Confidence 7888888899999999999887655
No 6
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=56.94 E-value=5.7 Score=29.06 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=19.7
Q ss_pred ceeecCeEEehhHHHHHHHHHHHHhh
Q 034153 67 GLKISPTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 67 giKV~P~~VLi~Sl~FI~~VilLHi~ 92 (102)
-+-++|..+++..+.|++++++|+.|
T Consensus 11 ~l~~~~~~~~~~~i~Flil~~iL~~~ 36 (173)
T PRK13460 11 LLDVNPGLVVWTLVTFLVVVLVLKKF 36 (173)
T ss_pred ccCCcHhHHHHHHHHHHHHHHHHHHH
Confidence 34456667777889999999999755
No 7
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=55.95 E-value=9.4 Score=30.27 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=31.9
Q ss_pred hhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhhhccccccCC
Q 034153 56 NMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKSAN 102 (102)
Q Consensus 56 gLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~Kl~~~~~~~ 102 (102)
..--+--.|..|+.+.-.+-|-+||+.++.-++--|+.|+.=.+++|
T Consensus 84 t~pP~~~g~t~Glavh~~iTITvSlImViaAliTtlvlK~C~~~s~~ 130 (205)
T PF15298_consen 84 TKPPRIFGDTSGLAVHQIITITVSLIMVIAALITTLVLKNCCAQSQN 130 (205)
T ss_pred ccCCcccCCCCCCCceEEEEEeeehhHHHHHhhhhhhhhhhhhhhcc
Confidence 34444445555877777777777777776666678899997666654
No 8
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=55.80 E-value=7.1 Score=28.52 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=29.7
Q ss_pred hhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhh
Q 034153 56 NMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93 (102)
Q Consensus 56 gLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~ 93 (102)
+++-|-+|-..++-+++...+.--+-|++++++|..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~iinflIl~~lL~~fl 40 (174)
T PRK07352 3 TLLLLATEAEGGFGLNLNLLETNLINLAIVIGLLYYFG 40 (174)
T ss_pred hHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888888888877777888888888888664
No 9
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=48.91 E-value=5.3 Score=25.51 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=26.5
Q ss_pred hccCCCceeecCeEEehhHHHHHHHHHHHHhhh
Q 034153 61 YTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93 (102)
Q Consensus 61 Ytdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~ 93 (102)
|..-.||+--.|...++|.+.|+..+++|.|+.
T Consensus 15 yGkVaPGWGTtplM~~~m~lf~vfl~iiL~IyN 47 (52)
T PF00737_consen 15 YGKVAPGWGTTPLMGVFMALFAVFLLIILEIYN 47 (52)
T ss_dssp TT--BSTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCCCccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567888889999999999999999999875
No 10
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=48.31 E-value=7.4 Score=28.46 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=18.2
Q ss_pred eecCeEEehhHHHHHHHHHHHHhh
Q 034153 69 KISPTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 69 KV~P~~VLi~Sl~FI~~VilLHi~ 92 (102)
.++|..+++..+.|++++++|+.|
T Consensus 15 ~~~~~~~~~~~i~Flil~~lL~~~ 38 (175)
T PRK14472 15 SPNPGLIFWTAVTFVIVLLILKKI 38 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778889999999999755
No 11
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=46.91 E-value=12 Score=25.90 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=16.4
Q ss_pred ecCeEEehhHHHHHHHHHHHHhh
Q 034153 70 ISPTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 70 V~P~~VLi~Sl~FI~~VilLHi~ 92 (102)
++ .+++++-+.|++++++|+.|
T Consensus 4 ~~-~t~~~~~i~flil~~ll~~~ 25 (140)
T PRK07353 4 FD-ATLPLMAVQFVLLTFILNAL 25 (140)
T ss_pred cc-hhHHHHHHHHHHHHHHHHHH
Confidence 45 35667778899999999855
No 12
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=43.84 E-value=9.8 Score=27.95 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=19.7
Q ss_pred eeecCeEEehhHHHHHHHHHHHHhh
Q 034153 68 LKISPTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 68 iKV~P~~VLi~Sl~FI~~VilLHi~ 92 (102)
+.+++.++++.-+.|++++++|+.|
T Consensus 14 ~~~~~~t~~~~iInFliL~~lL~~~ 38 (173)
T PRK13453 14 GGVEWGTVIVTVLTFIVLLALLKKF 38 (173)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888889999999999765
No 13
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=41.03 E-value=12 Score=26.99 Aligned_cols=25 Identities=20% Similarity=0.350 Sum_probs=19.1
Q ss_pred eeecCeEEehhHHHHHHHHHHHHhh
Q 034153 68 LKISPTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 68 iKV~P~~VLi~Sl~FI~~VilLHi~ 92 (102)
+.++|.++++.-+.|++++++|..|
T Consensus 4 ~~~~~~~~~~~~inflil~~lL~~f 28 (164)
T PRK14473 4 LGINLGLLIAQLINFLLLIFLLRTF 28 (164)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777888899999988855
No 14
>CHL00066 psbH photosystem II protein H
Probab=39.08 E-value=15 Score=24.96 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=27.9
Q ss_pred hccCCCceeecCeEEehhHHHHHHHHHHHHhhh
Q 034153 61 YTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93 (102)
Q Consensus 61 Ytdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~ 93 (102)
|-.-+||+--.|..-++|.+.++..+++|.|+.
T Consensus 30 yGkvapgWGTtp~Mgv~m~lf~vfl~iiLeiyN 62 (73)
T CHL00066 30 YGKVAPGWGTTPLMGVAMALFAVFLSIILEIYN 62 (73)
T ss_pred cCcccCCccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 445678888889999999999999999999875
No 15
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=38.56 E-value=30 Score=24.92 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=24.2
Q ss_pred hhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhhhc
Q 034153 56 NMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKL 95 (102)
Q Consensus 56 gLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~Kl 95 (102)
+|+--|.-.+ +++++...=+=.+.-.++|.+||.|.|-
T Consensus 49 ~~Lviyclk~--v~~~~~~~Gipei~a~~~V~~Lh~wkkn 86 (106)
T COG1687 49 GMLVIYCLKD--VAILLGPHGIPEILAAAIVAALHLWKKN 86 (106)
T ss_pred HHHHHHHHcc--ceeccCCCCHHHHHHHHHHHHHHHHhcc
Confidence 4444444332 4555555555567778889999999873
No 16
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=38.50 E-value=16 Score=24.84 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=27.9
Q ss_pred hccCCCceeecCeEEehhHHHHHHHHHHHHhhh
Q 034153 61 YTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93 (102)
Q Consensus 61 Ytdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~ 93 (102)
|-.-+||+--.|..-++|.+.++..+++|.|+.
T Consensus 30 yGkvapgWGTtp~Mg~~m~lf~vfl~iileiyN 62 (73)
T PLN00055 30 YGKVAPGWGTTPLMGVAMALFAVFLSIILEIYN 62 (73)
T ss_pred cCcccCCccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 455678888889999999999999999999875
No 17
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=38.28 E-value=38 Score=21.19 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=12.6
Q ss_pred EEehhHHHHHHHHHHHHhh
Q 034153 74 VVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 74 ~VLi~Sl~FI~~VilLHi~ 92 (102)
.++++++.|+..|+.+-|+
T Consensus 3 ~~~iV~i~iv~~lLg~~I~ 21 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSIC 21 (50)
T ss_pred ehHHHHHHHHHHHHHHHHH
Confidence 4566777777776666655
No 18
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=36.64 E-value=16 Score=24.21 Aligned_cols=34 Identities=21% Similarity=0.539 Sum_probs=28.0
Q ss_pred hccCCCceeecCeEEehhHHHHHHHHHHHHhhhh
Q 034153 61 YTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGK 94 (102)
Q Consensus 61 Ytdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~K 94 (102)
|-.-+||.--.|..-++|.+.++..+++|.|+..
T Consensus 18 yGKVaPGWGTTplMgv~m~Lf~vFl~iiLeIYNs 51 (64)
T PRK02624 18 YGKVVPGWGTTPVMAVFMVLFLVFLLIILQIYNQ 51 (64)
T ss_pred cCcccCCccchHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4455688888899999999999999999998753
No 19
>PF15052 TMEM169: TMEM169 protein family
Probab=35.76 E-value=15 Score=27.43 Aligned_cols=40 Identities=13% Similarity=0.449 Sum_probs=32.0
Q ss_pred hhhhhhccCCC---ceeecCeEEehhHHHHHHHHHHHHhhhhc
Q 034153 56 NMLRFYTDDAP---GLKISPTVVLLMSLCFIGFVTALHVFGKL 95 (102)
Q Consensus 56 gLlRfYtdd~~---giKV~P~~VLi~Sl~FI~~VilLHi~~Kl 95 (102)
|+.-+|.||.+ +|-+.|..+|.--++.+++.+-|-+++-+
T Consensus 45 NiF~~y~Eers~~hKi~~cPlLIl~YP~lIv~~t~~LglYaa~ 87 (133)
T PF15052_consen 45 NIFLVYNEERSFWHKITVCPLLILFYPFLIVLVTLSLGLYAAF 87 (133)
T ss_pred eeheeeeccceeeeeehhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888887 78899998888888888888888777554
No 20
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=35.62 E-value=15 Score=26.21 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=16.9
Q ss_pred eeecCeEEehhHHHHHHHHHHHH
Q 034153 68 LKISPTVVLLMSLCFIGFVTALH 90 (102)
Q Consensus 68 iKV~P~~VLi~Sl~FI~~VilLH 90 (102)
+.+++..+++-.+.|++++++|.
T Consensus 3 i~l~~~~~~~qli~Flil~~~l~ 25 (141)
T PRK08476 3 LDVNPYLMLATFVVFLLLIVILN 25 (141)
T ss_pred CcccHHHHHHHHHHHHHHHHHHH
Confidence 34666667777788888888885
No 21
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=34.19 E-value=25 Score=24.65 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=6.5
Q ss_pred ehhHHHHHHHHHHHHh
Q 034153 76 LLMSLCFIGFVTALHV 91 (102)
Q Consensus 76 Li~Sl~FI~~VilLHi 91 (102)
||+.|+++++++++|-
T Consensus 8 ii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 8 IIVAILLFLFLFYCHN 23 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444443
No 22
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=32.59 E-value=22 Score=27.84 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=23.5
Q ss_pred hhhhhccCCCceeecCeEEehhHHHHHHHHHHHHh
Q 034153 57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHV 91 (102)
Q Consensus 57 LlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi 91 (102)
++.+++++...+|+ ...|+++++|.++|++|-+
T Consensus 71 ~~~~~~~v~~rlk~--t~lI~~alAfl~Cv~~Lv~ 103 (186)
T PF06387_consen 71 TISFTEEVSERLKV--TRLIAFALAFLGCVVFLVM 103 (186)
T ss_pred eeccCcccccccch--hHHHHHHHHHHHHHHHHHh
Confidence 34567777776655 4567788999999976643
No 23
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=32.51 E-value=18 Score=28.36 Aligned_cols=24 Identities=25% Similarity=0.204 Sum_probs=20.1
Q ss_pred eecCeEEehhHHHHHHHHHHHHhh
Q 034153 69 KISPTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 69 KV~P~~VLi~Sl~FI~~VilLHi~ 92 (102)
.|++.++++..+-|+++|++|..|
T Consensus 2 ~id~~t~~~qiInFlILv~lL~~f 25 (250)
T PRK14474 2 LIDWFTVVAQIINFLILVYLLRRF 25 (250)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888899999999999865
No 24
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=31.06 E-value=19 Score=25.78 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=17.6
Q ss_pred ecCeEEehhHHHHHHHHHHHHhh
Q 034153 70 ISPTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 70 V~P~~VLi~Sl~FI~~VilLHi~ 92 (102)
+++.++++.-+.|++++++|..|
T Consensus 3 ~~~~~~~~~~inF~il~~iL~~f 25 (159)
T PRK13461 3 INIPTIIATIINFIILLLILKHF 25 (159)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 55556777888899999998644
No 25
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=30.79 E-value=39 Score=23.90 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=20.5
Q ss_pred hccCCCceeecCeEEehhHHHHHHHHHHHHhhhhccccc
Q 034153 61 YTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHK 99 (102)
Q Consensus 61 Ytdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~Kl~~~~ 99 (102)
|..+-++|-|. .++++++||..|++ -++.=+.|.|
T Consensus 26 ~~n~~~~Lgm~---~lvI~~iFil~Vil-wfvCC~kRkr 60 (94)
T PF05393_consen 26 FVNNWPNLGMW---FLVICGIFILLVIL-WFVCCKKRKR 60 (94)
T ss_pred ecCCCCccchh---HHHHHHHHHHHHHH-HHHHHHHhhh
Confidence 45555677764 67777777777664 4443334433
No 26
>PF10679 DUF2491: Protein of unknown function (DUF2491); InterPro: IPR019621 This entry represents a family of bacterial uncharacterised proteins.
Probab=30.15 E-value=19 Score=28.30 Aligned_cols=19 Identities=42% Similarity=0.747 Sum_probs=14.6
Q ss_pred CchhhhhhhhccCCCceee
Q 034153 52 GASTNMLRFYTDDAPGLKI 70 (102)
Q Consensus 52 ~SsagLlRfYtdd~~giKV 70 (102)
+.+.-|.|||+||+.=|.|
T Consensus 61 g~g~~l~RfYtddd~~lQv 79 (212)
T PF10679_consen 61 GQGSTLHRFYTDDDGFLQV 79 (212)
T ss_pred CCCcEEEEEEeCCCcEEEE
Confidence 4567799999999776644
No 27
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=30.04 E-value=33 Score=27.88 Aligned_cols=22 Identities=23% Similarity=0.708 Sum_probs=16.6
Q ss_pred EEehhHHHHHHHHHHHHhhhhc
Q 034153 74 VVLLMSLCFIGFVTALHVFGKL 95 (102)
Q Consensus 74 ~VLi~Sl~FI~~VilLHi~~Kl 95 (102)
.+|++.+.||..|+++.|+-|+
T Consensus 222 miI~v~~sFVsMiliiqifkkl 243 (244)
T KOG2678|consen 222 MIIFVILSFVSMILIIQIFKKL 243 (244)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4567777888888888888665
No 28
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=29.77 E-value=60 Score=19.09 Aligned_cols=19 Identities=16% Similarity=0.419 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHhhhhc
Q 034153 77 LMSLCFIGFVTALHVFGKL 95 (102)
Q Consensus 77 i~Sl~FI~~VilLHi~~Kl 95 (102)
+++++++++++++-+++++
T Consensus 19 ~~gl~il~~~vl~ai~~p~ 37 (56)
T PF12911_consen 19 VIGLIILLILVLLAIFAPF 37 (56)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777766
No 29
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=29.16 E-value=26 Score=25.83 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=10.3
Q ss_pred hhhhhc-cCCCceeec
Q 034153 57 MLRFYT-DDAPGLKIS 71 (102)
Q Consensus 57 LlRfYt-dd~~giKV~ 71 (102)
|+=||- ||+...+++
T Consensus 23 mlW~fR~ED~tpWNys 38 (125)
T PF15048_consen 23 MLWFFRVEDATPWNYS 38 (125)
T ss_pred HHHheecCCCCCcchH
Confidence 444665 888888765
No 30
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=28.68 E-value=25 Score=25.27 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=15.9
Q ss_pred CeEEehhHHHHHHHHHHHHhh
Q 034153 72 PTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 72 P~~VLi~Sl~FI~~VilLHi~ 92 (102)
|..+++..+.|++++++|+.|
T Consensus 8 ~~~~~~~~i~Flil~~ll~~~ 28 (164)
T PRK14471 8 FGLFFWQTILFLILLLLLAKF 28 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356677788899999998644
No 31
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=27.45 E-value=80 Score=19.47 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=12.2
Q ss_pred EEehhHHHHHHHHHHHH
Q 034153 74 VVLLMSLCFIGFVTALH 90 (102)
Q Consensus 74 ~VLi~Sl~FI~~VilLH 90 (102)
++|++.++|++.+.++-
T Consensus 10 VIlVF~lVglv~i~iva 26 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVA 26 (43)
T ss_pred eeeehHHHHHHHHHHHH
Confidence 57788888887766544
No 32
>PF01561 Hanta_G2: Hantavirus glycoprotein G2; InterPro: IPR002532 The medium (M) genome segment of Hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins [], G1 and G2, as a polyprotein precursor. This entry represents the polyprotein region which forms the G2 glycoprotein.; GO: 0030683 evasion by virus of host immune response, 0044423 virion part
Probab=27.01 E-value=57 Score=28.90 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=22.7
Q ss_pred eEEehhHHHHHHHHHHHHhhhhcccccc
Q 034153 73 TVVLLMSLCFIGFVTALHVFGKLYRHKS 100 (102)
Q Consensus 73 ~~VLi~Sl~FI~~VilLHi~~Kl~~~~~ 100 (102)
.+|+++-++||+.+++|-++-+..+++.
T Consensus 457 ~vv~Vli~lll~siil~s~~cP~r~~k~ 484 (485)
T PF01561_consen 457 MVVAVLIVLLLLSIILFSFFCPVRKHKK 484 (485)
T ss_pred EEeehhHHHHHHHHHHHheeCcchhccC
Confidence 4677888899999999999988876553
No 33
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=26.71 E-value=32 Score=26.37 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=17.2
Q ss_pred CeEEehhHHHHHHHHHHHHhh
Q 034153 72 PTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 72 P~~VLi~Sl~FI~~VilLHi~ 92 (102)
|-.++++.|.|++++++|..+
T Consensus 53 ~~~l~w~~I~FliL~~lL~k~ 73 (204)
T PRK09174 53 ASQLLWLAITFGLFYLFMSRV 73 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999998644
No 34
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=26.02 E-value=51 Score=20.84 Aligned_cols=26 Identities=15% Similarity=0.269 Sum_probs=16.2
Q ss_pred hccCCCceeecCeEEehhHHHHHHHHHH
Q 034153 61 YTDDAPGLKISPTVVLLMSLCFIGFVTA 88 (102)
Q Consensus 61 Ytdd~~giKV~P~~VLi~Sl~FI~~Vil 88 (102)
|++|-. +.+|.++++..+++.++.++
T Consensus 21 ~e~Df~--~~~p~~~Ii~gii~~~~fV~ 46 (56)
T PF11174_consen 21 RERDFA--QGSPVHFIIVGIILAALFVA 46 (56)
T ss_pred HHHHHH--cCCCchHHHHHHHHHHHHHH
Confidence 344443 35688888888777655443
No 35
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=25.67 E-value=69 Score=24.57 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=14.4
Q ss_pred eEEehhHHHHHHHHHHHHhhhh
Q 034153 73 TVVLLMSLCFIGFVTALHVFGK 94 (102)
Q Consensus 73 ~~VLi~Sl~FI~~VilLHi~~K 94 (102)
.+||+|+.+.+++|+++ ||.|
T Consensus 12 ~vvlv~a~g~l~~vllf-IfaK 32 (186)
T PF07406_consen 12 NVVLVIAYGSLVFVLLF-IFAK 32 (186)
T ss_pred eeehhhHHHHHHHHHHH-HHHH
Confidence 46888888888877654 4443
No 36
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=24.69 E-value=56 Score=30.52 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=21.7
Q ss_pred cCeEEehhHHHHHHHHHHHHhhhhcccc
Q 034153 71 SPTVVLLMSLCFIGFVTALHVFGKLYRH 98 (102)
Q Consensus 71 ~P~~VLi~Sl~FI~~VilLHi~~Kl~~~ 98 (102)
+|..+||+.+++|++++++-|.--|+|+
T Consensus 388 ~~t~~~~~~f~~if~iva~ii~~~L~R~ 415 (807)
T KOG1094|consen 388 SPTAILIIIFVAIFLIVALIIALMLWRW 415 (807)
T ss_pred CCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888999888888887777666653
No 37
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=24.20 E-value=47 Score=22.40 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=13.8
Q ss_pred EehhHHHHHHHHHHHHh
Q 034153 75 VLLMSLCFIGFVTALHV 91 (102)
Q Consensus 75 VLi~Sl~FI~~VilLHi 91 (102)
++++.++|++++++|-+
T Consensus 50 ~~ii~ii~v~ii~~l~f 66 (72)
T PF12575_consen 50 ILIISIIFVLIIVLLTF 66 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68889999888888843
No 38
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=23.47 E-value=38 Score=25.14 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=14.5
Q ss_pred CeEEehhHHHHHHHHHHHHh
Q 034153 72 PTVVLLMSLCFIGFVTALHV 91 (102)
Q Consensus 72 P~~VLi~Sl~FI~~VilLHi 91 (102)
|..++...+.|++++++|..
T Consensus 31 ~~q~~~~lI~F~iL~~ll~k 50 (181)
T PRK13454 31 PNQIFWLLVTLVAIYFVLTR 50 (181)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888854
No 39
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=23.17 E-value=65 Score=21.52 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=22.8
Q ss_pred hhhhhhhhccCCCceeecCeEEeh----hHHHHHHHHHHHHhhhhccccc
Q 034153 54 STNMLRFYTDDAPGLKISPTVVLL----MSLCFIGFVTALHVFGKLYRHK 99 (102)
Q Consensus 54 sagLlRfYtdd~~giKV~P~~VLi----~Sl~FI~~VilLHi~~Kl~~~~ 99 (102)
..++.++++- ++|..--+ .+|+|.+.-++-+++.|+.+.+
T Consensus 18 ~~wl~~lld~------~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~dr 61 (68)
T PF04971_consen 18 GYWLLQLLDQ------FSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDR 61 (68)
T ss_pred HHHHHHHHhc------cCcccchhHHHHHHHHHHHHHHHhHhhhhhhHhh
Confidence 4456666663 34544443 3455556666667777776544
No 40
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.59 E-value=65 Score=20.91 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=11.5
Q ss_pred EehhHHHHHHHHHHHHh
Q 034153 75 VLLMSLCFIGFVTALHV 91 (102)
Q Consensus 75 VLi~Sl~FI~~VilLHi 91 (102)
+++++++|++.|+.|=+
T Consensus 3 ~lI~Aiaf~vLvi~l~~ 19 (90)
T PF06103_consen 3 GLIAAIAFAVLVIFLIK 19 (90)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778888777665543
No 41
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.44 E-value=19 Score=30.12 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=11.1
Q ss_pred CCCchhhhhhhhccCC
Q 034153 50 GAGASTNMLRFYTDDA 65 (102)
Q Consensus 50 ~~~SsagLlRfYtdd~ 65 (102)
..|+-.-|++||+.-+
T Consensus 271 I~gA~~ellKy~e~vS 286 (311)
T KOG0812|consen 271 IEGAHSELLKYFERVS 286 (311)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3556677999998543
No 42
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=22.20 E-value=1e+02 Score=22.44 Aligned_cols=6 Identities=17% Similarity=-0.330 Sum_probs=2.6
Q ss_pred hccccc
Q 034153 94 KLYRHK 99 (102)
Q Consensus 94 Kl~~~~ 99 (102)
|..++|
T Consensus 102 ~c~~~K 107 (179)
T PF13908_consen 102 CCCLYK 107 (179)
T ss_pred cccccc
Confidence 444433
No 43
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=22.19 E-value=61 Score=22.73 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=14.7
Q ss_pred EEehhHHHHHHHHHHHHhh
Q 034153 74 VVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 74 ~VLi~Sl~FI~~VilLHi~ 92 (102)
++++..+.|++++++|+.+
T Consensus 6 ~~~~~~i~Flil~~il~~~ 24 (156)
T PRK05759 6 TLIGQLIAFLILVWFIMKF 24 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999755
No 44
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=21.76 E-value=55 Score=21.79 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=22.5
Q ss_pred EEehhHHHHHHHHHHHHhhhhccccccCC
Q 034153 74 VVLLMSLCFIGFVTALHVFGKLYRHKSAN 102 (102)
Q Consensus 74 ~VLi~Sl~FI~~VilLHi~~Kl~~~~~~~ 102 (102)
-+.+.+++|+++=+.+-++-++..+|.+|
T Consensus 36 Wfyiati~YtvlQig~~v~k~v~~~kr~~ 64 (66)
T PF10746_consen 36 WFYIATIAYTVLQIGYLVWKKVRDWKRKN 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36688899999888888888887666544
No 45
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.44 E-value=67 Score=21.71 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=11.3
Q ss_pred EehhHHHHHHHHHHHHhhhhcc
Q 034153 75 VLLMSLCFIGFVTALHVFGKLY 96 (102)
Q Consensus 75 VLi~Sl~FI~~VilLHi~~Kl~ 96 (102)
+.++.+++++++++|+++.++.
T Consensus 16 l~~~~~~l~~~~~~l~ll~~ll 37 (108)
T PF07219_consen 16 LWVALILLLLLFVVLYLLLRLL 37 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555565554443
No 46
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=21.32 E-value=43 Score=25.89 Aligned_cols=9 Identities=22% Similarity=0.604 Sum_probs=4.2
Q ss_pred ccceeeecC
Q 034153 30 AGMRRRRVT 38 (102)
Q Consensus 30 ~~~rrr~~~ 38 (102)
..+|+|-..
T Consensus 116 ~eLR~~ll~ 124 (251)
T PF09753_consen 116 SELRKRLLS 124 (251)
T ss_pred HHHHhhhcc
Confidence 345555443
No 47
>TIGR02839 spore_V_AE stage V sporulation protein AE. This model describes stage V sporulation protein AE, a paralog of stage V sporulation protein AC. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAE have a stage V sproulation defect.
Probab=21.27 E-value=28 Score=25.20 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=26.2
Q ss_pred hhhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhhhcccc
Q 034153 55 TNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRH 98 (102)
Q Consensus 55 agLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~Kl~~~ 98 (102)
+-|+.+| |++|..+++.-++..++...|+++-|+.++
T Consensus 16 Q~l~d~~-------~l~~~~~~~~lV~~gaiLtglGvYd~l~~f 52 (114)
T TIGR02839 16 QLLLDKT-------KLTPAHILVTFVTVGAILDGFGLYDKLIEF 52 (114)
T ss_pred HHHHHHh-------cCChHHHHHHHHHHHHHHccccchHHHHHH
Confidence 3456666 588877777666666777778888887654
No 48
>PHA02975 hypothetical protein; Provisional
Probab=20.42 E-value=55 Score=21.99 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=16.4
Q ss_pred CceeecCeEEehhHHHHHHHHHHHHhh
Q 034153 66 PGLKISPTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 66 ~giKV~P~~VLi~Sl~FI~~VilLHi~ 92 (102)
+.-|=.+...+++.++|++++++|-++
T Consensus 37 ~~~~~~~~~~~ii~i~~v~~~~~~~fl 63 (69)
T PHA02975 37 PKKKSSLSIILIIFIIFITCIAVFTFL 63 (69)
T ss_pred CCcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 333444455667777777777766554
No 49
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=20.37 E-value=98 Score=19.50 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=14.1
Q ss_pred EehhHHHHHHH---HHHHHhhhhccc
Q 034153 75 VLLMSLCFIGF---VTALHVFGKLYR 97 (102)
Q Consensus 75 VLi~Sl~FI~~---VilLHi~~Kl~~ 97 (102)
++.|+++|++. ++++++++|+.+
T Consensus 9 i~Gm~iVF~~L~lL~~~i~l~~~~~~ 34 (79)
T PF04277_consen 9 IIGMGIVFLVLILLILVISLMSKLIR 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666544 455677777743
No 50
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=20.30 E-value=89 Score=22.76 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=12.2
Q ss_pred ehhHHHHHHHHHHHHhhhh
Q 034153 76 LLMSLCFIGFVTALHVFGK 94 (102)
Q Consensus 76 Li~Sl~FI~~VilLHi~~K 94 (102)
++++++||++.++|-|+++
T Consensus 17 ~~FA~L~i~~FiILLIi~~ 35 (121)
T PF10669_consen 17 MFFAFLFIVVFIILLIITK 35 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566677776666666654
No 51
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.10 E-value=70 Score=22.96 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=15.2
Q ss_pred eEEehhHHHHHHHHHHHHhh
Q 034153 73 TVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 73 ~~VLi~Sl~FI~~VilLHi~ 92 (102)
.++++.-+.|++++++|+.|
T Consensus 23 ~t~~~~~inFliL~~lL~k~ 42 (156)
T CHL00118 23 ATLPLMALQFLLLMVLLNII 42 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999743
No 52
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=20.10 E-value=41 Score=25.95 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=17.6
Q ss_pred ecCeEEehhHHHHHHHHHHHHhh
Q 034153 70 ISPTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 70 V~P~~VLi~Sl~FI~~VilLHi~ 92 (102)
|++.++++.-+.|++++++|+.|
T Consensus 3 id~~t~~~qiInFlil~~lL~kf 25 (246)
T TIGR03321 3 IDWFTVIAQLINFLILVWLLKRF 25 (246)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777788899999999754
Done!