Query 034153
Match_columns 102
No_of_seqs 144 out of 248
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 17:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_C SEC61BETA, protein tran 100.0 7.1E-32 2.4E-36 187.3 0.7 88 9-98 6-96 (96)
2 2ww9_C Protein transport prote 99.9 1.7E-26 5.7E-31 158.0 -1.0 66 31-96 13-85 (87)
3 1rh5_C Secbeta; protein transl 99.7 5.1E-19 1.7E-23 111.2 0.6 43 50-92 8-50 (53)
4 3arc_H Photosystem II reaction 42.0 5.5 0.00019 25.5 0.1 34 61-94 17-50 (65)
5 2j5l_A Apical membrane antigen 16.2 31 0.0011 30.0 0.0 29 70-98 509-537 (581)
6 2zjs_E Preprotein translocase 14.5 74 0.0025 18.8 1.4 20 73-92 32-51 (60)
7 3din_D Preprotein translocase 12.9 94 0.0032 18.8 1.6 21 72-92 30-50 (65)
8 2akh_X Protein-export membrane 11.9 1.4E+02 0.005 18.6 2.3 22 73-94 54-75 (77)
9 3dl8_C SECE; RECA-type ATPase 11.8 1.1E+02 0.0036 18.5 1.6 19 73-91 31-49 (65)
10 1b9u_A Protein (ATP synthase); 11.0 1.7E+02 0.0059 15.0 2.1 17 76-92 8-24 (34)
No 1
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=99.96 E-value=7.1e-32 Score=187.28 Aligned_cols=88 Identities=35% Similarity=0.591 Sum_probs=34.9
Q ss_pred ccccccCCCCCCCCCCCcccc-cc--ceeeecCCCCCCCCCCCCCCCchhhhhhhhccCCCceeecCeEEehhHHHHHHH
Q 034153 9 STSSATSRPGVVAPRGSAAAT-AG--MRRRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGF 85 (102)
Q Consensus 9 ~~s~~~~~~~~~~pr~~aaa~-~~--~rrr~~~~~~~~~~~~~~~~~SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~ 85 (102)
|++|++.+. +.+|++.++++ ++ +||||.+++++++ ++++.+++++|||||||||++||||+|++||+|+|+||++
T Consensus 6 ~s~t~vg~~-~~~p~~~a~~~~~g~~~r~Rr~~~~~~~~-~~~~~~~SsaGllRfY~dds~GlKV~P~~VLv~sl~Fi~~ 83 (96)
T 2wwb_C 6 PSGTNVGSS-GRSPSKAVAARAAGSTVRQRKNASCGTRS-AGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIAS 83 (96)
T ss_dssp ---------------------------------------------------------CCSCCCCCSSCSHHHHHHHHHHH
T ss_pred cCccccccC-CCCCCcccccccCCcceEecccCCCccCC-CCCCCCCCCcceeeeeecCCCceEECCEEehhhHHHHHHH
Confidence 666766654 66888877644 55 9999977665433 3357788999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccc
Q 034153 86 VTALHVFGKLYRH 98 (102)
Q Consensus 86 VilLHi~~Kl~~~ 98 (102)
|++||||+||+|+
T Consensus 84 Vi~Lhi~~K~~r~ 96 (96)
T 2wwb_C 84 VFMLHIWGKYTRS 96 (96)
T ss_dssp HHHHSCSSSCCCC
T ss_pred HHHHHHhhhhccC
Confidence 9999999999874
No 2
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=99.91 E-value=1.7e-26 Score=157.98 Aligned_cols=66 Identities=33% Similarity=0.557 Sum_probs=21.0
Q ss_pred cceeeecCCC-------CCCCCCCCCCCCchhhhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhhhcc
Q 034153 31 GMRRRRVTGS-------SGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLY 96 (102)
Q Consensus 31 ~~rrr~~~~~-------~~~~~~~~~~~~SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~Kl~ 96 (102)
.+|||..... ...++++++.+++++|||||||||++||||+|++||+|+|+||++|++||||+||+
T Consensus 13 ~~rrr~~~~~~~~~~~~~~~s~~~~~~ggss~gllrfYtdds~GlKV~P~~VLv~sl~FIa~VilLHI~gK~~ 85 (87)
T 2ww9_C 13 LQKRRQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT 85 (87)
T ss_dssp ---------------------------------------------CCCHHHHHHHHHHHHHHHHHC-------
T ss_pred hhhcccchhhhhhhhccCCCCCCCCCCCCCchhHHHHhhcCCCceEEcCeeehhhHHHHHHHHHHHHHhhhhc
Confidence 3666654432 22333345678899999999999999999999999999999999999999999997
No 3
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=99.72 E-value=5.1e-19 Score=111.16 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=29.3
Q ss_pred CCCchhhhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhh
Q 034153 50 GAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 50 ~~~SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~ 92 (102)
..+|++||+||||||++||||+|++||+++++||++|++||+.
T Consensus 8 ~~~ssaGLvryy~ee~~giKi~P~~Vl~~si~~i~~V~~L~~~ 50 (53)
T 1rh5_C 8 GLATSAGLIRYMDETFSKIRVKPEHVIGVTVAFVIIEAILTYG 50 (53)
T ss_dssp -------------CCCCSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccchhhhhccCCccccCCeehhhhHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999985
No 4
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=41.97 E-value=5.5 Score=25.55 Aligned_cols=34 Identities=24% Similarity=0.541 Sum_probs=28.1
Q ss_pred hccCCCceeecCeEEehhHHHHHHHHHHHHhhhh
Q 034153 61 YTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGK 94 (102)
Q Consensus 61 Ytdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~K 94 (102)
|-.-+||.-=.|...++|.+.++..+++|.|+..
T Consensus 17 yGKvaPGWGTtplMgv~m~Lf~vFl~iiLeIYNs 50 (65)
T 3arc_H 17 YGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNS 50 (65)
T ss_dssp TTCCBSTTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCcccCCccChhHHHHHHHHHHHHHHHHHHHhCc
Confidence 4455778888899999999999999999998753
No 5
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB: 1hn6_A
Probab=16.16 E-value=31 Score=29.98 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred ecCeEEehhHHHHHHHHHHHHhhhhcccc
Q 034153 70 ISPTVVLLMSLCFIGFVTALHVFGKLYRH 98 (102)
Q Consensus 70 V~P~~VLi~Sl~FI~~VilLHi~~Kl~~~ 98 (102)
+.-.+++|+.++-.++|++|+.+.+|.|.
T Consensus 509 ~~~~~~ii~~~~~~~~~~a~~~~~~~~k~ 537 (581)
T 2j5l_A 509 TYDNMKIIIASSAAVAVLATILMVYLYKR 537 (581)
T ss_dssp -----------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44456677777888888888888775543
No 6
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=14.53 E-value=74 Score=18.84 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=15.5
Q ss_pred eEEehhHHHHHHHHHHHHhh
Q 034153 73 TVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 73 ~~VLi~Sl~FI~~VilLHi~ 92 (102)
..|+++++++.+++.++..+
T Consensus 32 ~vViv~v~i~~~~~~~vD~~ 51 (60)
T 2zjs_E 32 QAILLFTLAFMVILGLYDTV 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888754
No 7
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=12.92 E-value=94 Score=18.75 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=15.1
Q ss_pred CeEEehhHHHHHHHHHHHHhh
Q 034153 72 PTVVLLMSLCFIGFVTALHVF 92 (102)
Q Consensus 72 P~~VLi~Sl~FI~~VilLHi~ 92 (102)
=.+|+++++++.+++.++..+
T Consensus 30 T~vViv~~~i~~~~i~~vD~~ 50 (65)
T 3din_D 30 FGVVLVILAVTSVYFFVLDFI 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888777643
No 8
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=11.95 E-value=1.4e+02 Score=18.55 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=16.7
Q ss_pred eEEehhHHHHHHHHHHHHhhhh
Q 034153 73 TVVLLMSLCFIGFVTALHVFGK 94 (102)
Q Consensus 73 ~~VLi~Sl~FI~~VilLHi~~K 94 (102)
+.-.+++++|++..++|.++.+
T Consensus 54 k~T~~la~~F~v~sl~l~~~~~ 75 (77)
T 2akh_X 54 RMTALLATLFFIISLVLGNINS 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788889999888887754
No 9
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=11.84 E-value=1.1e+02 Score=18.50 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=14.0
Q ss_pred eEEehhHHHHHHHHHHHHh
Q 034153 73 TVVLLMSLCFIGFVTALHV 91 (102)
Q Consensus 73 ~~VLi~Sl~FI~~VilLHi 91 (102)
.+|+++++++.+++.++..
T Consensus 31 ~vViv~v~i~~~~i~~vD~ 49 (65)
T 3dl8_C 31 ISVIIFSLAIGVYLWILDL 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577888888888877764
No 10
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=10.97 E-value=1.7e+02 Score=15.03 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=11.5
Q ss_pred ehhHHHHHHHHHHHHhh
Q 034153 76 LLMSLCFIGFVTALHVF 92 (102)
Q Consensus 76 Li~Sl~FI~~VilLHi~ 92 (102)
+...+.|++.+++|..+
T Consensus 8 ~~~~i~Flil~~~l~kf 24 (34)
T 1b9u_A 8 LGQAIAFVLFVLFCMKY 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556788888777744
Done!