BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034154
MGLLSWFMGNPNPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEVPRPAESVTVFEFGS
VAASADKVTMAGYCPVSDDLEPCRWEILPASDSDAPQFRVVF

High Scoring Gene Products

Symbol, full name Information P value
AT3G59840 protein from Arabidopsis thaliana 8.5e-33

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034154
        (102 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2080412 - symbol:AT3G59840 "AT3G59840" species...   358  8.5e-33   1


>TAIR|locus:2080412 [details] [associations]
            symbol:AT3G59840 "AT3G59840" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009536 "plastid" evidence=IDA] EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0009941 KO:K00540 EMBL:AY065151
            EMBL:AY081597 EMBL:AY085682 EMBL:AK175970 IPI:IPI00534305
            RefSeq:NP_567086.1 UniGene:At.28578 IntAct:Q8VZ93 PaxDb:Q8VZ93
            PRIDE:Q8VZ93 EnsemblPlants:AT3G59840.1 GeneID:825153
            KEGG:ath:AT3G59840 TAIR:At3g59840 eggNOG:NOG319098
            HOGENOM:HOG000241517 InParanoid:Q8VZ93 OMA:VTVFEFG PhylomeDB:Q8VZ93
            ProtClustDB:CLSN2689255 Genevestigator:Q8VZ93 Uniprot:Q8VZ93
        Length = 97

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 73/102 (71%), Positives = 81/102 (79%)

Query:     1 MGLLSWFMGNPNPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEVPRPAESVTVFEFGS 60
             MG+LSWF G+P P+  QSE+ K     Q PKSE  A PGMNGAIEVPRP +  TVFEFGS
Sbjct:     1 MGILSWFTGSPKPS--QSETSKPEM-IQMPKSETPA-PGMNGAIEVPRP-DRATVFEFGS 55

Query:    61 VAASADKVTMAGYCPVSDDLEPCRWEILPASDSDAPQFRVVF 102
             VAA+ D+VT+AGYCPVSDDLEPCRWEILPA   DAPQFRVVF
Sbjct:    56 VAATGDRVTLAGYCPVSDDLEPCRWEILPADGKDAPQFRVVF 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      102       102   0.00091  102 3  11 23  0.46    30
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  119 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.93u 0.10s 13.03t   Elapsed:  00:00:01
  Total cpu time:  12.93u 0.10s 13.03t   Elapsed:  00:00:01
  Start:  Fri May 10 16:18:58 2013   End:  Fri May 10 16:18:59 2013

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