BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034154
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFX|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 4.5 CalciumCY-Digmp Complex
pdb|3GFX|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 4.5 CalciumCY-Digmp Complex
pdb|3GFY|A Chain A, Klebsiella Pneumoniae Blrp1 With Fmn And Cyclic Digmp, No
Metal Ions
pdb|3GFY|B Chain B, Klebsiella Pneumoniae Blrp1 With Fmn And Cyclic Digmp, No
Metal Ions
pdb|3GFZ|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 6 Manganese/cy-digmp
Complex
pdb|3GFZ|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 6 Manganese/cy-digmp
Complex
pdb|3GG0|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 9.0 ManganeseCY-Digmp
Complex
pdb|3GG0|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 9.0 ManganeseCY-Digmp
Complex
pdb|3GG1|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 8.0 CalciumCY-Digmp Complex
pdb|3GG1|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 8.0 CalciumCY-Digmp Complex
Length = 413
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 73 YCPVSDDLEPCRWEILPASDSDAPQ 97
YC + + L+P RW ++PAS + APQ
Sbjct: 147 YC-LPEPLQPSRWMMMPASGTAAPQ 170
>pdb|2BO9|A Chain A, Human Carboxypeptidase A4 In Complex With Human Latexin.
pdb|2BO9|C Chain C, Human Carboxypeptidase A4 In Complex With Human Latexin
Length = 308
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 12 NPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEV 46
+PN + SF G + NP SE+ P N +EV
Sbjct: 141 DPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEV 175
>pdb|4A94|A Chain A, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
pdb|4A94|B Chain B, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
Length = 310
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 12 NPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEV 46
+PN + SF G + NP SE+ P N +EV
Sbjct: 143 DPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEV 177
>pdb|3RGN|A Chain A, Crystal Structure Of Spin-Labeled Btub W371r1
Length = 594
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1 MGLLSWFMGNPNPNPQQSESFKSA 24
+G L F GNPN +P++S+ ++ A
Sbjct: 398 LGQLYGFYGNPNLDPEKSKQWEGA 421
>pdb|2GSK|A Chain A, Structure Of The Btub:tonb Complex
Length = 590
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1 MGLLSWFMGNPNPNPQQSESFKSA 24
+G L F GNPN +P++S+ ++ A
Sbjct: 394 LGQLYGFYGNPNLDPEKSKQWEGA 417
>pdb|1NQE|A Chain A, Outer Membrane Cobalamin Transporter (btub) From E. Coli
pdb|1NQG|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium
pdb|1NQH|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium And Cyanocobalamin (Vitamin B12)
Substrate
pdb|1UJW|A Chain A, Structure Of The Complex Between Btub And Colicin E3
Receptor Binding Domain
pdb|2GUF|A Chain A, In Meso Crystal Structure Of The Cobalamin Transporter,
Btub
pdb|2YSU|A Chain A, Structure Of The Complex Between Btub And Colicin E2
Receptor Binding Domain
Length = 594
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1 MGLLSWFMGNPNPNPQQSESFKSA 24
+G L F GNPN +P++S+ ++ A
Sbjct: 398 LGQLYGFYGNPNLDPEKSKQWEGA 421
>pdb|1NQF|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
Methionine Substiution Construct For Se-Met Sad Phasing
Length = 594
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1 MGLLSWFMGNPNPNPQQSESFKSA 24
+G L F GNPN +P++S+ ++ A
Sbjct: 398 LGQLYGFYGNPNLDPEKSKQWEGA 421
>pdb|3M8B|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 In The Apo
State
pdb|3M8D|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 With Bound
Calcium And Cyanocobalamin
Length = 594
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1 MGLLSWFMGNPNPNPQQSESFKSA 24
+G L F GNPN +P++S+ ++ A
Sbjct: 398 LGQLYGFYGNPNLDPEKSKQWEGA 421
>pdb|3RGM|A Chain A, Crystal Structure Of Spin-Labeled Btub T156r1
Length = 594
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1 MGLLSWFMGNPNPNPQQSESFKSA 24
+G L F GNPN +P++S+ ++ A
Sbjct: 398 LGQLYGFYGNPNLDPEKSKQWEGA 421
>pdb|2PCU|A Chain A, Human Carboxypeptidase A4 In Complex With A Cleaved
Hexapeptide
Length = 305
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 12 NPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEV 46
+PN + SF G + NP SE+ P N +EV
Sbjct: 139 DPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEV 173
>pdb|2BOA|A Chain A, Human Procarboxypeptidase A4.
pdb|2BOA|B Chain B, Human Procarboxypeptidase A4
Length = 404
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 12 NPNPQQSESFKSAGDTQNPKSEISAVPGMNGAIEV 46
+PN + SF G + NP SE+ P N +EV
Sbjct: 237 DPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEV 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,321,756
Number of Sequences: 62578
Number of extensions: 116813
Number of successful extensions: 153
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 11
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)