BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034154
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0HXR3|TRUB_SHESR tRNA pseudouridine synthase B OS=Shewanella sp. (strain MR-7)
GN=truB PE=3 SV=1
Length = 317
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 19 ESFKSAGDTQNPKSEISAVPGMNG--------AIEVPRPAESVTVFEFGSVAASADKVTM 70
E F+ GDTQ S SA+ IEVPR A +TVFE ++ D++T+
Sbjct: 112 EHFR--GDTQQVPSMYSALKYQGQPLYKYAREGIEVPREARPITVFELNFISLEGDELTL 169
Query: 71 AGYC 74
+C
Sbjct: 170 DIHC 173
>sp|A0KTZ8|TRUB_SHESA tRNA pseudouridine synthase B OS=Shewanella sp. (strain ANA-3)
GN=truB PE=3 SV=1
Length = 317
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 19 ESFKSAGDTQNPKSEISAVPGMNG--------AIEVPRPAESVTVFEFGSVAASADKVTM 70
E F+ GDTQ S SA+ IEVPR A +TVFE + D++T+
Sbjct: 112 EHFR--GDTQQVPSMYSALKYQGQPLYKYAREGIEVPREARPITVFELNFIGLEGDELTL 169
Query: 71 AGYC 74
+C
Sbjct: 170 DIHC 173
>sp|Q0HLF9|TRUB_SHESM tRNA pseudouridine synthase B OS=Shewanella sp. (strain MR-4)
GN=truB PE=3 SV=1
Length = 317
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYC 74
IEVPR A +TVFE ++ D++T+ +C
Sbjct: 142 GIEVPREARPITVFELNFISLEGDELTLDIHC 173
>sp|Q12QH9|TRUB_SHEDO tRNA pseudouridine synthase B OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=truB PE=3 SV=1
Length = 317
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYCP-------VSDDL 80
IEVPR A +TVFE + D++T+ +C ++DDL
Sbjct: 142 GIEVPREARPITVFELNFIKLEGDELTLDIHCSKGTYIRTITDDL 186
>sp|A1RGX7|TRUB_SHESW tRNA pseudouridine synthase B OS=Shewanella sp. (strain W3-18-1)
GN=truB PE=3 SV=1
Length = 318
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 19 ESFKSAGDTQNPKSEISAVPGMNG--------AIEVPRPAESVTVFEFGSVAASADKVTM 70
E F+ GDTQ S SA+ IEVPR + +TVFE ++ D++T+
Sbjct: 112 EHFR--GDTQQVPSMYSALKYQGQPLYKYAREGIEVPRESRPITVFELNFISLEGDELTL 169
Query: 71 AGYC 74
+C
Sbjct: 170 DIHC 173
>sp|A4Y9B8|TRUB_SHEPC tRNA pseudouridine synthase B OS=Shewanella putrefaciens (strain
CN-32 / ATCC BAA-453) GN=truB PE=3 SV=1
Length = 318
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 19 ESFKSAGDTQNPKSEISAVPGMNG--------AIEVPRPAESVTVFEFGSVAASADKVTM 70
E F+ GDTQ S SA+ IEVPR + +TVFE ++ D++T+
Sbjct: 112 EHFR--GDTQQVPSMYSALKYQGQPLYKYAREGIEVPRESRPITVFELNFISLEGDELTL 169
Query: 71 AGYC 74
+C
Sbjct: 170 DIHC 173
>sp|B0TQA0|TRUB_SHEHH tRNA pseudouridine synthase B OS=Shewanella halifaxensis (strain
HAW-EB4) GN=truB PE=3 SV=1
Length = 315
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYCP-------VSDDL 80
IEVPR A + VFE ++ D++T+ +C ++DDL
Sbjct: 142 GIEVPREARPINVFELNFISLEGDELTLDIHCSKGTYIRTITDDL 186
>sp|B8CKH5|TRUB_SHEPW tRNA pseudouridine synthase B OS=Shewanella piezotolerans (strain
WP3 / JCM 13877) GN=truB PE=3 SV=1
Length = 316
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYCP-------VSDDL 80
IEVPR A + VFE ++ D++T+ +C ++DDL
Sbjct: 142 GIEVPREARPINVFELNFISLEGDELTLDIHCSKGTYIRTITDDL 186
>sp|B1KRQ8|TRUB_SHEWM tRNA pseudouridine synthase B OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=truB PE=3 SV=1
Length = 317
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYCP-------VSDDL 80
IEVPR A + VFE ++ D++T+ +C ++DDL
Sbjct: 142 GIEVPRKARPINVFELNFISLEGDELTLDIHCSKGTYIRTITDDL 186
>sp|A8H738|TRUB_SHEPA tRNA pseudouridine synthase B OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=truB PE=3 SV=1
Length = 315
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYCP-------VSDDL 80
IEVPR A + VFE ++ D++T+ +C ++DDL
Sbjct: 142 GIEVPREARPINVFELNFISLEGDELTLDIHCSKGTYIRTITDDL 186
>sp|B8E6N4|TRUB_SHEB2 tRNA pseudouridine synthase B OS=Shewanella baltica (strain OS223)
GN=truB PE=3 SV=1
Length = 321
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYC 74
IEVPR + +TVFE + D++T+ +C
Sbjct: 142 GIEVPRESRPITVFELNFIGLEGDELTLDIHC 173
>sp|A3D7K4|TRUB_SHEB5 tRNA pseudouridine synthase B OS=Shewanella baltica (strain OS155 /
ATCC BAA-1091) GN=truB PE=3 SV=1
Length = 321
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYC 74
IEVPR + +TVFE + D++T+ +C
Sbjct: 142 GIEVPRESRPITVFELNFIGLEGDELTLDIHC 173
>sp|A9KZW9|TRUB_SHEB9 tRNA pseudouridine synthase B OS=Shewanella baltica (strain OS195)
GN=truB PE=3 SV=1
Length = 321
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYC 74
IEVPR + +TVFE + D++T+ +C
Sbjct: 142 GIEVPRESRPITVFELNFIGLEGDELTLDIHC 173
>sp|A6WRG6|TRUB_SHEB8 tRNA pseudouridine synthase B OS=Shewanella baltica (strain OS185)
GN=truB PE=3 SV=1
Length = 321
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYC 74
IEVPR + +TVFE + D++T+ +C
Sbjct: 142 GIEVPRESRPITVFELNFIGLEGDELTLDIHC 173
>sp|Q086H0|TRUB_SHEFN tRNA pseudouridine synthase B OS=Shewanella frigidimarina (strain
NCIMB 400) GN=truB PE=3 SV=1
Length = 317
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYC 74
IEVPR + +TVFE + D++T+ +C
Sbjct: 142 GIEVPRESRPITVFELNFIKLEGDELTLDIHC 173
>sp|Q9R9M8|AAU3_RHIME Protein aau3 OS=Rhizobium meliloti (strain 1021) GN=aau3 PE=3
SV=2
Length = 154
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 34 ISAVPGMNGAIEVPRPAESVTVFEFGSVAASADKVTMA 71
+ V G NG + +PRPA +T+F+ V + D MA
Sbjct: 54 VETVRGRNGGVRLPRPASEITLFDV--VKVTEDSFAMA 89
>sp|A1S464|TRUB_SHEAM tRNA pseudouridine synthase B OS=Shewanella amazonensis (strain
ATCC BAA-1098 / SB2B) GN=truB PE=3 SV=1
Length = 315
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 45 EVPRPAESVTVFEFGSVAASADKVTMAGYC 74
EVPR A +TVFE + D++T+ +C
Sbjct: 144 EVPREARPITVFELNFIKLEGDELTLDIHC 173
>sp|A8G909|TRUB_SERP5 tRNA pseudouridine synthase B OS=Serratia proteamaculans (strain
568) GN=truB PE=3 SV=1
Length = 314
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 43 AIEVPRPAESVTVFEFGSVAASADKVTMAGYCP-------VSDDL 80
IEVPR A S+TV+E + D++ + +C ++DDL
Sbjct: 143 GIEVPREARSITVYELQFIRWEGDELELEIHCSKGTYIRTITDDL 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,634,145
Number of Sequences: 539616
Number of extensions: 1521612
Number of successful extensions: 2789
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2766
Number of HSP's gapped (non-prelim): 29
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)