BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034165
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%)
Query: 1 MDRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLG 60
+ + LAS VV+FSK+ C C+ +K+L G S + ELDE + G +++ AL
Sbjct: 10 LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 69
Query: 61 CNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLKDAGAI 100
+VP VFIGGK +G +TV+ L LL+DA A
Sbjct: 70 GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAAT 109
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%)
Query: 1 MDRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLG 60
+ + LAS VV+FSK+ C C+ +K+L G S + ELDE + G +++ AL
Sbjct: 11 LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 70
Query: 61 CNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLKDAGAI 100
+VP VFIGGK +G +TV+ L LL+DA A
Sbjct: 71 GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAAT 110
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 2 DRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDE-DARGKEMEWALVRLG 60
D V + ++ VV++SK+ C +K LF V P + ELDE A+G +++ L RL
Sbjct: 9 DAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLT 68
Query: 61 CNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLKDAGA 99
+VP VFIGGK +G + L G L+ LL +A A
Sbjct: 69 GQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%)
Query: 1 MDRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLG 60
++++ S VVIFSK+SC C K+LF+D V+ + ELD G + + AL ++
Sbjct: 25 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 84
Query: 61 CNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLL 94
+VP +F+ G F+G A L G L L+
Sbjct: 85 GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 118
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%)
Query: 1 MDRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLG 60
++++ S VVIFSK+SC C K+LF+D V+ + ELD G + + AL ++
Sbjct: 39 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 98
Query: 61 CNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLL 94
+VP +F+ G F+G A L G L L+
Sbjct: 99 GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 132
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%)
Query: 1 MDRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLG 60
++++ S VVIFSK+SC C K+LF+D V+ + ELD G + + AL ++
Sbjct: 17 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 76
Query: 61 CNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLL 94
+VP +F+ G F+G A L G L L+
Sbjct: 77 GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 110
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 2 DRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDE-DARGKEMEWALVRLG 60
+ + + ++ VVI+SK+ C C +K LF GV P + ELD+ +G +++ L RL
Sbjct: 10 ESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLT 69
Query: 61 CNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLKDAGA 99
+VP VF+ GK +G + L G L+ +L +A
Sbjct: 70 GQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANG 108
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 3 RVGRLASQKAVVIFSKSSCCMCHA-IKRLFYDQGVSPA---IYELDEDARGKEMEWALVR 58
V L QK V + +K+ C C A + LF + V + + ELDE + G E++ AL
Sbjct: 9 HVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEE 68
Query: 59 LGCNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLK 95
+ +VP V+I GK +G + + TL+ NG L ++LK
Sbjct: 69 ISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 105
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 3 RVGRLASQKAVVIFSKSSCCMCHA-IKRLFYDQGVSPA---IYELDEDARGKEMEWALVR 58
V L QK V + +K+ C C A + LF + V + + ELDE + G E++ AL
Sbjct: 29 HVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEE 88
Query: 59 LGCNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLK 95
+ +VP V+I GK +G + + TL+ NG L ++LK
Sbjct: 89 ISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 125
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG 71
AV++FSK++C C +K + + + A ELD+ + G ++ L +VP +F+
Sbjct: 19 AVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVR 78
Query: 72 GKFVGSANTVMTLQLNGSLKKLLKDA 97
GKF+G + TV+ N L ++ ++
Sbjct: 79 GKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG 71
AV++FSK++C C +K + + + A ELD+ + G ++ L +VP +F+
Sbjct: 19 AVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVR 78
Query: 72 GKFVGSANTVMTLQLNGSLKKLLKDA 97
GKF+G + TV+ N L ++ ++
Sbjct: 79 GKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG 71
AV++FSK++C C +K + + + A ELD+ + G ++ L +VP +F+
Sbjct: 19 AVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVR 78
Query: 72 GKFVGSANTVMTLQLNGSLKKLLKDA 97
GKF+G + TV+ N L ++ ++
Sbjct: 79 GKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 3 RVGRLASQKAVVIFSKSSCCMCHA-IKRLFYDQGVSPA---IYELDEDARGKEMEWALVR 58
V L QK V + +K+ C A + LF + V + + ELDE + G E++ AL
Sbjct: 12 HVKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEE 71
Query: 59 LGCNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLK 95
+ +VP V+I GK +G + + TL+ NG L ++LK
Sbjct: 72 ISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 108
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 7 LASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVP 66
L + VVIFSKS C +K LF GV + ELD+ G ++ L + +VP
Sbjct: 13 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 72
Query: 67 AVFIGGKFVGSANTVMTLQLNGSLKKLLKD 96
+F+ VG + +G L+KLL++
Sbjct: 73 NIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 102
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully
Oxidized Form
Length = 82
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGG 72
V I++K +C CH K L +GVS EL D + E + R G +VP +FI
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVS--FQELPIDGNAAKREEMIKRSG-RTTVPQIFIDA 59
Query: 73 KFVGSANTVMTLQLNGSLKKLLK 95
+ +G + + L G L LLK
Sbjct: 60 QHIGGYDDLYALDARGGLDPLLK 82
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 10 QKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVR-LGCNPSVPAV 68
Q+++ IF+K C C K+L +D+G+S +E G + VR + +VP V
Sbjct: 169 QESISIFTKPGCPFCAKAKQLLHDKGLS-----FEEIILGHDATIVSVRAVSGRTTVPQV 223
Query: 69 FIGGKFVGSAN 79
FIGGK +G ++
Sbjct: 224 FIGGKHIGGSD 234
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGG 72
V I++K +C H K L +GVS EL D + E + R G +VP +FI
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVS--FQELPIDGNAAKREEMIKRSG-RTTVPQIFIDA 59
Query: 73 KFVGSANTVMTLQLNGSLKKLLK 95
+ +G + + L G L LLK
Sbjct: 60 QHIGGYDDLYALDARGGLDPLLK 82
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 3 RVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPA----IYELDEDARGKEMEWALVR 58
V L ++ + + SK+ C CHA +++ P + +L++ G +++ AL
Sbjct: 17 HVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYE 76
Query: 59 LGCNPSVPAVFIGGKFVG 76
+ +VP ++I GK +G
Sbjct: 77 INGQRTVPNIYINGKHIG 94
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 13 VVIFSKSS-----CCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPA 67
VV+F K + C A L +QGV PA + E+ + P++P
Sbjct: 18 VVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQ 77
Query: 68 VFIGGKFVGSANTVMTLQLNGSLKKLLKDAGAI 100
+++ +F+G + + ++ +G L LL++A A+
Sbjct: 78 LYVNKEFIGGCDVITSMARSGELADLLEEAQAL 110
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 8 ASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPA 67
S K ++++++ +C C + L +GV D DA + + R + P
Sbjct: 3 GSMKEIILYTRPNCPYCKRARDLLDKKGVKYT----DIDASTSLRQEMVQRANGRNTFPQ 58
Query: 68 VFIGGKFVGSANTVMTLQLNGSLKKLLKD 96
+FIG VG + + L+ G L LL+D
Sbjct: 59 IFIGDYHVGGCDDLYALENKGKLDSLLQD 87
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYE---LDEDARGKEMEWALVRLGCNPSVPAVF 69
VV+F K +C C + + + + E + E++ L +L +VP VF
Sbjct: 15 VVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVF 74
Query: 70 IGGKFVGSANTVMTLQLNGSLKKLLKDAGAIW 101
IG +G + +++LQ +G L LK GA+
Sbjct: 75 IGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ 106
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 2 DRVGRLASQKAVVIFSKSS-----CCMCHAIKRLFYDQGVSP-AIYELDEDARGKEMEWA 55
+++ L + VV+F K + C +A+ ++ GV A Y + +D E+
Sbjct: 11 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDP---ELRQG 67
Query: 56 LVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLKDAG 98
+ P++P V++ G+FVG + ++ + NG L + LK G
Sbjct: 68 IKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLG 110
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 13 VVIFSKSSCCMCHAIKRLFYDQ-GVSPAIY--ELDEDARGKEMEWALVRLGCNPSVPAVF 69
++IFSKS+C K L ++ P Y ELD+ G+E++ + + +VP +
Sbjct: 16 IIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLL 75
Query: 70 IGGKFVGSANTVMTLQLNGSL 90
+ G G + L G L
Sbjct: 76 VNGVSRGGNEEIKKLHTQGKL 96
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYE---LDEDARGKEMEWALVRLGCNPSVPAVF 69
VV+F K +C + + + + E + E++ L +L +VP VF
Sbjct: 14 VVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVF 73
Query: 70 IGGKFVGSANTVMTLQLNGSLKKLLKDAGAIW 101
IG +G ++ +++LQ +G L LK GA+
Sbjct: 74 IGKDSIGGSSDLVSLQQSGELLTRLKQIGALQ 105
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 1 MDRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPA----IYELDEDARGKEMEWAL 56
+ V L ++ + + SK+ C HA +++ P + +L++ G +++ AL
Sbjct: 7 IKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAAL 66
Query: 57 VRLGCNPSVPAVFIGGKFVG 76
+ +VP ++I GK +G
Sbjct: 67 YEINGQRTVPNIYINGKHIG 86
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGG 72
V+I+++ C C K L +G E+D A + R G N + P +FIG
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAE--FNEIDASATPELRAEMQERSGRN-TFPQIFIGS 64
Query: 73 KFVGSANTVMTLQLNGSLKKLLK 95
VG + + L+ G L LLK
Sbjct: 65 VHVGGCDDLYALEDEGKLDSLLK 87
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYE---LDEDARGKEMEWALVRLGCNPSVPAVF 69
VV+F K +C C + L + E + + E++ L +L +VP VF
Sbjct: 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF 73
Query: 70 IGGKFVGSANTVMTLQLNGSLKKLLKDAGAI 100
IG + +G + ++ G L L+ GA+
Sbjct: 74 IGKECIGGCTDLESMHKRGELLTRLQQVGAV 104
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 7 LASQKAVVIFSKSS-----CCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGC 61
L ++ +V++F K + C I + GV +++ ED +E+ L
Sbjct: 11 LTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED---EEVRQGLKTFSN 67
Query: 62 NPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLK 95
P+ P +++ G VG + V L+ NG L +LK
Sbjct: 68 WPTYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 1 MDRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPA----IYELDEDARGKEMEWAL 56
+ V L ++ + + SK+ C HA +++ P + +L++ G +++ AL
Sbjct: 251 IKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAAL 310
Query: 57 VRLGCNPSVPAVFIGGKFVG 76
+ +VP ++I GK +G
Sbjct: 311 YEINGQRTVPNIYINGKHIG 330
>pdb|3ZF7|VV Chain v, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 192
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 50 KEMEWALVRLGCNPSVPAVFIGGKFVGSANTVM-TLQLNGSL 90
K E++ VR C P A+ + G+F G ++ L NG L
Sbjct: 19 KSPEYSTVRKSCKPGTIAIILAGRFRGRRAVILKQLPKNGPL 60
>pdb|3MYR|A Chain A, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|C Chain C, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|E Chain E, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|G Chain G, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
Length = 269
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 28 KRLFYDQGVSPAIYELDEDARGKEMEWALVRLGC 61
+R FYD+G ++ D G + W L RLGC
Sbjct: 190 RRPFYDKG----LFAESFDDEGAKQGWCLYRLGC 219
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 6 RLASQKAVVIFSKSSCCMCHA----IKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGC 61
RLA+ K V IF K +C C + + + +G + I ++ E E+ ++
Sbjct: 15 RLANNK-VTIFVKYTCPFCRNALDILNKFSFKRG-AYEIVDIKEFKPENELRDYFEQITG 72
Query: 62 NPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLKDAGAI 100
+VP +F G +G + ++ + +L +L G +
Sbjct: 73 GKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 111
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 2 DRVGRLASQKAVVIFSKSS-----CCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWAL 56
D + +L + + VV+F K + C + + ++ + V +E + + L
Sbjct: 9 DTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVP---FEDVNILENEMLRQGL 65
Query: 57 VRLGCNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLKDA 97
P+ P ++IGG+F G + + G L++ ++ A
Sbjct: 66 KEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKA 106
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGG 72
+ I++ S+C C L +GV Y +D D + E R S+P +FI
Sbjct: 18 IEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGD--NEAREAMAARANGKRSLPQIFIDD 75
Query: 73 KFVGSANTVMTLQLNGSLKKLLK 95
+ +G + + L G L LL
Sbjct: 76 QHIGGCDDIYALDGAGKLDPLLH 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,859,125
Number of Sequences: 62578
Number of extensions: 104016
Number of successful extensions: 262
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 35
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)