Query 034165
Match_columns 102
No_of_seqs 127 out of 1094
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 10:29:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 2.3E-35 5E-40 175.3 11.9 99 4-102 1-99 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 1E-33 2.2E-38 170.4 12.5 100 2-101 4-106 (108)
3 KOG1752 Glutaredoxin and relat 100.0 6.6E-33 1.4E-37 165.1 11.9 100 2-101 5-104 (104)
4 PRK10824 glutaredoxin-4; Provi 100.0 3.2E-32 7E-37 164.9 10.8 97 2-101 6-107 (115)
5 TIGR00365 monothiol glutaredox 100.0 2.3E-29 4.9E-34 149.0 10.2 90 2-94 3-97 (97)
6 cd03028 GRX_PICOT_like Glutare 100.0 1.5E-27 3.2E-32 139.5 9.9 85 4-91 1-90 (90)
7 PRK10638 glutaredoxin 3; Provi 99.9 5.3E-26 1.1E-30 131.0 10.1 82 11-95 2-83 (83)
8 PTZ00062 glutaredoxin; Provisi 99.9 5E-26 1.1E-30 150.0 10.7 92 2-96 104-200 (204)
9 TIGR02181 GRX_bact Glutaredoxi 99.9 6.4E-26 1.4E-30 129.3 8.8 79 13-94 1-79 (79)
10 TIGR02180 GRX_euk Glutaredoxin 99.9 3.1E-25 6.8E-30 127.2 9.9 82 13-94 1-84 (84)
11 COG0278 Glutaredoxin-related p 99.9 2.7E-25 5.8E-30 129.5 9.5 94 2-98 6-105 (105)
12 cd03419 GRX_GRXh_1_2_like Glut 99.9 8.5E-25 1.8E-29 125.0 9.4 81 12-92 1-81 (82)
13 COG0695 GrxC Glutaredoxin and 99.9 2.3E-24 5E-29 123.5 9.3 79 12-91 2-80 (80)
14 cd03031 GRX_GRX_like Glutaredo 99.9 5.3E-24 1.2E-28 134.1 10.1 84 12-98 1-94 (147)
15 cd03418 GRX_GRXb_1_3_like Glut 99.9 1.5E-23 3.3E-28 118.1 9.9 74 12-88 1-75 (75)
16 cd03027 GRX_DEP Glutaredoxin ( 99.9 6.5E-23 1.4E-27 115.4 8.1 71 12-85 2-72 (73)
17 TIGR02190 GlrX-dom Glutaredoxi 99.9 1.3E-22 2.8E-27 115.9 8.9 76 6-85 3-78 (79)
18 cd03029 GRX_hybridPRX5 Glutare 99.9 4.3E-22 9.3E-27 111.7 8.9 70 12-85 2-71 (72)
19 PRK12759 bifunctional gluaredo 99.9 5.4E-22 1.2E-26 142.5 10.5 88 11-100 2-94 (410)
20 TIGR02183 GRXA Glutaredoxin, G 99.9 2.1E-21 4.6E-26 112.5 8.6 73 13-88 2-81 (86)
21 PRK11200 grxA glutaredoxin 1; 99.9 2.8E-21 6.1E-26 111.6 8.7 73 12-87 2-81 (85)
22 cd02066 GRX_family Glutaredoxi 99.8 2E-20 4.3E-25 103.5 8.5 71 12-85 1-71 (72)
23 KOG0911 Glutaredoxin-related p 99.8 2.1E-20 4.5E-25 123.1 9.7 92 3-97 131-227 (227)
24 PF00462 Glutaredoxin: Glutare 99.8 1.1E-19 2.4E-24 98.5 7.0 60 13-75 1-60 (60)
25 cd03030 GRX_SH3BGR Glutaredoxi 99.8 2.5E-19 5.5E-24 104.9 8.5 80 13-95 2-91 (92)
26 TIGR02194 GlrX_NrdH Glutaredox 99.8 3.4E-18 7.5E-23 95.8 6.9 64 13-80 1-65 (72)
27 PRK10329 glutaredoxin-like pro 99.8 5.9E-18 1.3E-22 97.1 7.8 65 12-80 2-66 (81)
28 TIGR02196 GlrX_YruB Glutaredox 99.6 3.2E-15 6.9E-20 82.9 7.4 66 12-80 1-66 (74)
29 KOG2824 Glutaredoxin-related p 99.6 2.8E-15 6E-20 101.5 7.7 88 11-98 131-225 (281)
30 cd02976 NrdH NrdH-redoxin (Nrd 99.6 1.4E-14 3E-19 80.2 7.9 66 12-80 1-66 (73)
31 TIGR02200 GlrX_actino Glutared 99.6 2E-14 4.3E-19 80.7 7.3 65 12-79 1-67 (77)
32 cd02973 TRX_GRX_like Thioredox 99.5 1E-13 2.3E-18 76.2 6.2 58 12-76 2-64 (67)
33 PF04908 SH3BGR: SH3-binding, 99.4 2.6E-12 5.7E-17 76.0 8.5 81 12-95 2-97 (99)
34 cd03041 GST_N_2GST_N GST_N fam 99.3 1.9E-11 4.1E-16 69.1 8.5 71 13-86 2-74 (77)
35 cd00570 GST_N_family Glutathio 99.3 2.7E-11 5.8E-16 65.7 8.1 68 14-84 2-69 (71)
36 cd03040 GST_N_mPGES2 GST_N fam 99.3 5.9E-11 1.3E-15 66.8 8.1 69 12-86 1-73 (77)
37 cd03037 GST_N_GRX2 GST_N famil 99.3 6.6E-11 1.4E-15 65.6 7.8 68 14-86 2-70 (71)
38 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 3.4E-11 7.4E-16 70.1 6.6 68 2-76 5-77 (89)
39 cd03060 GST_N_Omega_like GST_N 99.2 6.9E-10 1.5E-14 61.6 8.6 67 14-84 2-69 (71)
40 cd03059 GST_N_SspA GST_N famil 99.1 8.4E-10 1.8E-14 61.2 8.7 70 13-86 1-70 (73)
41 TIGR00411 redox_disulf_1 small 99.1 9.4E-10 2E-14 62.2 8.2 62 12-78 2-68 (82)
42 cd03051 GST_N_GTT2_like GST_N 99.1 6.7E-10 1.5E-14 61.5 6.8 71 13-84 1-72 (74)
43 cd03055 GST_N_Omega GST_N fami 99.1 2.1E-09 4.6E-14 62.3 9.0 70 11-84 17-87 (89)
44 TIGR00412 redox_disulf_2 small 99.1 7.9E-10 1.7E-14 62.4 6.3 55 12-75 2-60 (76)
45 cd03036 ArsC_like Arsenate Red 99.1 2.4E-10 5.2E-15 69.0 4.4 47 13-59 1-48 (111)
46 cd03045 GST_N_Delta_Epsilon GS 99.1 2E-09 4.3E-14 59.9 7.7 72 13-85 1-72 (74)
47 TIGR01295 PedC_BrcD bacterioci 99.0 1.9E-09 4.2E-14 66.1 8.1 76 3-78 15-106 (122)
48 PRK01655 spxA transcriptional 99.0 2.7E-09 5.9E-14 66.2 8.3 46 13-58 2-48 (131)
49 cd02977 ArsC_family Arsenate R 99.0 1.1E-09 2.4E-14 65.3 6.0 47 13-59 1-48 (105)
50 PF13417 GST_N_3: Glutathione 99.0 2.7E-09 5.8E-14 59.9 7.1 68 15-86 1-68 (75)
51 cd03056 GST_N_4 GST_N family, 99.0 8.8E-09 1.9E-13 56.9 7.8 71 13-84 1-71 (73)
52 cd03032 ArsC_Spx Arsenate Redu 99.0 1E-08 2.2E-13 62.2 8.5 47 13-59 2-49 (115)
53 PHA02125 thioredoxin-like prot 98.9 5.1E-09 1.1E-13 58.9 6.4 55 13-75 2-56 (75)
54 PRK13344 spxA transcriptional 98.9 1.2E-08 2.6E-13 63.4 8.3 46 13-58 2-48 (132)
55 PRK12559 transcriptional regul 98.9 2E-08 4.4E-13 62.3 8.3 46 13-58 2-48 (131)
56 PF05768 DUF836: Glutaredoxin- 98.9 2.7E-08 5.8E-13 56.8 7.9 53 12-72 1-57 (81)
57 TIGR01617 arsC_related transcr 98.9 4.8E-09 1E-13 63.8 5.1 64 13-77 1-65 (117)
58 cd03052 GST_N_GDAP1 GST_N fami 98.9 2.4E-08 5.2E-13 55.9 7.1 71 13-84 1-71 (73)
59 cd03035 ArsC_Yffb Arsenate Red 98.8 1.1E-08 2.3E-13 61.3 5.9 47 13-59 1-48 (105)
60 cd03058 GST_N_Tau GST_N family 98.8 9.8E-08 2.1E-12 53.1 8.8 70 13-86 1-71 (74)
61 cd02975 PfPDO_like_N Pyrococcu 98.8 3E-08 6.5E-13 59.9 7.1 57 7-70 19-81 (113)
62 cd03053 GST_N_Phi GST_N family 98.8 8.5E-08 1.8E-12 53.5 8.2 73 13-86 2-74 (76)
63 KOG3029 Glutathione S-transfer 98.8 3.7E-08 8E-13 67.7 7.1 68 12-85 90-157 (370)
64 cd03054 GST_N_Metaxin GST_N fa 98.8 1.1E-07 2.4E-12 52.7 7.8 57 19-86 14-70 (72)
65 cd03061 GST_N_CLIC GST_N famil 98.7 1.1E-07 2.4E-12 55.6 7.7 64 19-86 20-83 (91)
66 cd03033 ArsC_15kD Arsenate Red 98.7 5.3E-08 1.2E-12 59.0 6.3 47 12-58 1-48 (113)
67 TIGR02187 GlrX_arch Glutaredox 98.7 4E-08 8.7E-13 65.4 6.1 57 10-73 134-195 (215)
68 TIGR03140 AhpF alkyl hydropero 98.7 1.3E-08 2.9E-13 75.3 4.1 73 3-77 111-183 (515)
69 PF13192 Thioredoxin_3: Thiore 98.7 9.5E-08 2.1E-12 53.8 6.6 55 12-75 2-60 (76)
70 PRK15317 alkyl hydroperoxide r 98.7 1.8E-08 4E-13 74.5 4.2 73 2-76 109-181 (517)
71 cd02954 DIM1 Dim1 family; Dim1 98.7 1.7E-07 3.6E-12 56.9 7.2 67 3-76 4-82 (114)
72 cd03076 GST_N_Pi GST_N family, 98.7 5.8E-07 1.3E-11 50.0 8.8 71 12-86 1-71 (73)
73 cd03049 GST_N_3 GST_N family, 98.7 3.7E-07 7.9E-12 50.6 7.8 68 13-84 1-71 (73)
74 PHA02278 thioredoxin-like prot 98.6 3.5E-07 7.6E-12 54.5 8.1 71 2-75 5-85 (103)
75 cd03042 GST_N_Zeta GST_N famil 98.6 2.3E-07 4.9E-12 51.2 6.9 70 14-84 2-71 (73)
76 COG4545 Glutaredoxin-related p 98.6 2.3E-07 5E-12 51.8 6.5 62 14-77 5-78 (85)
77 cd02953 DsbDgamma DsbD gamma f 98.6 3.9E-07 8.5E-12 53.8 7.7 66 2-70 2-78 (104)
78 cd02949 TRX_NTR TRX domain, no 98.6 3.4E-07 7.3E-12 53.5 7.2 58 13-77 17-82 (97)
79 PF13409 GST_N_2: Glutathione 98.6 1.3E-07 2.9E-12 52.3 4.9 67 20-86 1-68 (70)
80 COG1393 ArsC Arsenate reductas 98.6 2.8E-07 6E-12 56.2 6.4 49 12-60 2-51 (117)
81 TIGR03143 AhpF_homolog putativ 98.6 2.2E-07 4.8E-12 69.4 6.8 66 3-75 470-540 (555)
82 PRK10026 arsenate reductase; P 98.6 3.5E-07 7.5E-12 57.4 6.5 50 11-60 2-52 (141)
83 cd03080 GST_N_Metaxin_like GST 98.5 1.2E-06 2.7E-11 48.9 8.0 63 13-86 2-71 (75)
84 cd03039 GST_N_Sigma_like GST_N 98.5 1.1E-06 2.4E-11 48.6 7.4 70 13-85 1-70 (72)
85 cd03050 GST_N_Theta GST_N fami 98.5 1.3E-06 2.7E-11 48.8 7.7 73 13-86 1-73 (76)
86 cd03038 GST_N_etherase_LigE GS 98.5 5.7E-07 1.2E-11 51.3 6.3 66 19-86 14-80 (84)
87 cd02947 TRX_family TRX family; 98.5 1.4E-06 3E-11 49.1 7.8 65 5-76 4-77 (93)
88 TIGR01616 nitro_assoc nitrogen 98.5 5.8E-07 1.3E-11 55.4 6.4 47 12-58 2-49 (126)
89 PRK09481 sspA stringent starva 98.5 1.6E-06 3.5E-11 57.2 8.9 73 9-85 7-79 (211)
90 PRK10853 putative reductase; P 98.5 5.1E-07 1.1E-11 55.1 5.9 47 13-59 2-49 (118)
91 cd03048 GST_N_Ure2p_like GST_N 98.5 2.7E-06 5.9E-11 48.0 8.6 72 13-86 2-76 (81)
92 TIGR00014 arsC arsenate reduct 98.5 5.4E-07 1.2E-11 54.6 5.9 47 13-59 1-48 (114)
93 cd02989 Phd_like_TxnDC9 Phosdu 98.5 2.3E-06 5.1E-11 51.6 8.3 69 3-78 14-91 (113)
94 KOG0406 Glutathione S-transfer 98.5 1.9E-06 4.1E-11 58.0 8.5 74 11-87 8-81 (231)
95 cd03034 ArsC_ArsC Arsenate Red 98.5 7.5E-07 1.6E-11 53.8 5.9 48 13-60 1-49 (112)
96 TIGR02182 GRXB Glutaredoxin, G 98.4 1.3E-06 2.8E-11 57.8 7.5 69 14-87 1-70 (209)
97 PRK10387 glutaredoxin 2; Provi 98.4 1.5E-06 3.3E-11 57.0 7.8 70 13-87 1-71 (210)
98 cd02951 SoxW SoxW family; SoxW 98.4 3.4E-06 7.4E-11 51.3 8.8 30 2-31 4-36 (125)
99 PTZ00051 thioredoxin; Provisio 98.4 2.3E-06 5E-11 49.7 7.6 72 2-78 9-87 (98)
100 KOG4023 Uncharacterized conser 98.4 7.1E-07 1.5E-11 52.4 4.8 87 11-97 2-99 (108)
101 COG3118 Thioredoxin domain-con 98.4 6.9E-07 1.5E-11 61.9 5.3 63 10-79 43-114 (304)
102 cd02985 TRX_CDSP32 TRX family, 98.4 3.6E-06 7.8E-11 49.8 7.8 71 2-76 4-85 (103)
103 KOG0910 Thioredoxin-like prote 98.4 5.2E-07 1.1E-11 56.9 4.0 58 11-75 62-128 (150)
104 cd03044 GST_N_EF1Bgamma GST_N 98.3 5.3E-06 1.2E-10 46.2 7.0 70 14-85 2-72 (75)
105 cd02948 TRX_NDPK TRX domain, T 98.3 7.8E-06 1.7E-10 48.2 7.8 65 3-75 9-84 (102)
106 cd02957 Phd_like Phosducin (Ph 98.3 3.8E-06 8.2E-11 50.5 6.5 66 13-84 28-98 (113)
107 cd02994 PDI_a_TMX PDIa family, 98.3 4.1E-06 8.8E-11 49.0 6.5 64 3-73 10-82 (101)
108 cd03047 GST_N_2 GST_N family, 98.3 1E-05 2.2E-10 44.8 7.6 70 14-84 2-71 (73)
109 cd01659 TRX_superfamily Thiore 98.3 4E-06 8.6E-11 43.4 5.4 56 13-72 1-61 (69)
110 cd02955 SSP411 TRX domain, SSP 98.3 1.9E-05 4E-10 48.6 8.8 77 2-78 6-97 (124)
111 PRK09381 trxA thioredoxin; Pro 98.2 9.7E-06 2.1E-10 48.1 7.3 59 13-78 25-91 (109)
112 PRK15113 glutathione S-transfe 98.2 1.2E-05 2.6E-10 53.2 8.4 74 11-85 4-79 (214)
113 cd02959 ERp19 Endoplasmic reti 98.2 9.5E-06 2.1E-10 49.3 7.2 71 2-76 10-91 (117)
114 cd02996 PDI_a_ERp44 PDIa famil 98.2 7.9E-06 1.7E-10 48.5 6.6 63 4-73 11-89 (108)
115 cd03057 GST_N_Beta GST_N famil 98.2 1.5E-05 3.2E-10 44.5 7.3 71 14-86 2-73 (77)
116 TIGR00862 O-ClC intracellular 98.2 2.3E-05 4.9E-10 53.1 9.3 64 19-86 17-80 (236)
117 PF13098 Thioredoxin_2: Thiore 98.2 1.6E-05 3.4E-10 47.2 7.5 72 12-83 8-107 (112)
118 cd02986 DLP Dim1 family, Dim1- 98.2 9.6E-06 2.1E-10 49.2 6.3 54 15-75 20-81 (114)
119 TIGR02187 GlrX_arch Glutaredox 98.2 1.2E-05 2.5E-10 53.5 7.2 61 10-75 20-90 (215)
120 PF00085 Thioredoxin: Thioredo 98.2 5.6E-06 1.2E-10 48.1 5.0 68 4-76 9-85 (103)
121 cd03003 PDI_a_ERdj5_N PDIa fam 98.2 1.3E-05 2.7E-10 47.0 6.5 65 4-75 11-85 (101)
122 cd02984 TRX_PICOT TRX domain, 98.1 1.8E-05 3.9E-10 45.7 6.9 68 3-75 4-81 (97)
123 cd03046 GST_N_GTT1_like GST_N 98.1 2.8E-05 6.1E-10 43.0 7.1 71 14-86 2-72 (76)
124 cd02965 HyaE HyaE family; HyaE 98.1 1.3E-05 2.8E-10 48.4 6.0 60 12-78 30-99 (111)
125 cd02962 TMX2 TMX2 family; comp 98.1 2.3E-05 5E-10 49.8 7.2 61 13-79 51-125 (152)
126 PRK10996 thioredoxin 2; Provis 98.1 7.9E-05 1.7E-09 46.4 9.2 69 3-76 44-120 (139)
127 PF03960 ArsC: ArsC family; I 98.1 1.2E-05 2.6E-10 48.3 5.2 45 16-60 1-46 (110)
128 TIGR01068 thioredoxin thioredo 98.1 3.4E-05 7.3E-10 44.5 7.1 58 13-75 18-81 (101)
129 PLN00410 U5 snRNP protein, DIM 98.1 3.3E-05 7.1E-10 48.6 7.2 46 3-48 13-68 (142)
130 PLN02473 glutathione S-transfe 98.0 3.6E-05 7.8E-10 50.7 7.7 72 13-85 3-74 (214)
131 PRK10877 protein disulfide iso 98.0 3.4E-05 7.5E-10 52.1 7.6 23 12-34 110-132 (232)
132 cd02999 PDI_a_ERp44_like PDIa 98.0 3.3E-05 7.2E-10 45.5 6.6 54 13-70 22-78 (100)
133 cd03004 PDI_a_ERdj5_C PDIa fam 98.0 3.5E-05 7.5E-10 45.2 6.7 53 13-72 23-83 (104)
134 cd02950 TxlA TRX-like protein 98.0 5E-05 1.1E-09 47.5 7.6 67 4-75 13-90 (142)
135 cd03005 PDI_a_ERp46 PDIa famil 98.0 2.7E-05 5.9E-10 45.3 6.0 67 4-75 10-86 (102)
136 cd03043 GST_N_1 GST_N family, 98.0 7.1E-05 1.5E-09 41.5 7.4 64 19-84 8-71 (73)
137 cd03002 PDI_a_MPD1_like PDI fa 98.0 5.4E-05 1.2E-09 44.6 7.1 53 13-70 22-80 (109)
138 cd03006 PDI_a_EFP1_N PDIa fami 98.0 2.9E-05 6.2E-10 47.0 5.8 60 8-73 26-95 (113)
139 cd02956 ybbN ybbN protein fami 98.0 7.6E-05 1.6E-09 43.1 7.4 59 13-76 16-80 (96)
140 cd02961 PDI_a_family Protein D 98.0 0.00012 2.5E-09 41.8 7.9 62 4-70 8-77 (101)
141 cd02963 TRX_DnaJ TRX domain, D 98.0 5.3E-05 1.2E-09 45.3 6.6 56 13-75 28-92 (111)
142 cd03000 PDI_a_TMX3 PDIa family 97.9 2E-05 4.4E-10 46.4 4.6 30 4-33 9-39 (104)
143 TIGR01126 pdi_dom protein disu 97.9 3.3E-05 7.1E-10 44.7 5.4 62 4-70 6-75 (102)
144 cd02987 Phd_like_Phd Phosducin 97.9 1.8E-05 3.8E-10 51.4 4.6 80 13-98 87-175 (175)
145 TIGR01262 maiA maleylacetoacet 97.9 3.4E-05 7.3E-10 50.6 6.0 72 15-86 2-73 (210)
146 cd02993 PDI_a_APS_reductase PD 97.9 7.6E-05 1.6E-09 44.4 6.9 54 13-69 25-83 (109)
147 cd03065 PDI_b_Calsequestrin_N 97.9 7.2E-05 1.6E-09 45.8 6.8 66 4-76 19-101 (120)
148 cd02952 TRP14_like Human TRX-r 97.9 2.7E-05 5.8E-10 47.6 4.8 65 13-77 25-105 (119)
149 PLN02378 glutathione S-transfe 97.9 9.2E-05 2E-09 49.0 7.8 64 19-86 18-81 (213)
150 cd02997 PDI_a_PDIR PDIa family 97.9 8.3E-05 1.8E-09 43.3 6.7 68 4-75 10-88 (104)
151 PF13728 TraF: F plasmid trans 97.9 6.1E-05 1.3E-09 50.4 6.7 67 3-70 114-189 (215)
152 cd02988 Phd_like_VIAF Phosduci 97.9 4.4E-05 9.6E-10 50.2 5.7 78 13-98 105-192 (192)
153 KOG0907 Thioredoxin [Posttrans 97.9 4.1E-05 8.8E-10 45.9 5.1 56 13-75 25-87 (106)
154 PLN02817 glutathione dehydroge 97.9 0.00012 2.6E-09 50.4 7.9 64 19-86 71-134 (265)
155 cd03001 PDI_a_P5 PDIa family, 97.8 0.00013 2.9E-09 42.4 6.8 53 13-70 22-78 (103)
156 PF13899 Thioredoxin_7: Thiore 97.8 8E-05 1.7E-09 42.2 5.6 62 3-70 9-79 (82)
157 COG0625 Gst Glutathione S-tran 97.8 0.00012 2.6E-09 48.2 6.8 73 14-88 2-75 (211)
158 cd02998 PDI_a_ERp38 PDIa famil 97.8 0.00012 2.7E-09 42.5 6.1 54 13-70 22-81 (105)
159 TIGR02740 TraF-like TraF-like 97.8 0.00012 2.6E-09 50.5 6.7 66 4-70 161-235 (271)
160 cd03077 GST_N_Alpha GST_N fami 97.8 0.00033 7.2E-09 39.4 7.4 68 13-84 2-71 (79)
161 PTZ00062 glutaredoxin; Provisi 97.7 0.00013 2.8E-09 48.5 6.2 64 2-78 7-78 (204)
162 PRK13728 conjugal transfer pro 97.7 0.00019 4.1E-09 46.9 6.7 35 12-46 72-110 (181)
163 PF14595 Thioredoxin_9: Thiore 97.7 3.8E-05 8.1E-10 47.5 3.1 63 4-70 36-103 (129)
164 cd03020 DsbA_DsbC_DsbG DsbA fa 97.7 0.0004 8.7E-09 45.5 7.8 23 11-33 79-101 (197)
165 cd02992 PDI_a_QSOX PDIa family 97.6 0.00039 8.5E-09 41.8 6.6 31 4-34 11-44 (114)
166 PRK10357 putative glutathione 97.6 0.00043 9.3E-09 45.1 7.2 69 14-86 2-71 (202)
167 TIGR02738 TrbB type-F conjugat 97.6 0.00055 1.2E-08 43.5 7.1 37 10-46 51-91 (153)
168 TIGR02739 TraF type-F conjugat 97.5 0.00045 9.9E-09 47.4 6.7 68 2-70 143-219 (256)
169 COG2999 GrxB Glutaredoxin 2 [P 97.5 0.00021 4.7E-09 46.5 4.4 68 14-86 2-70 (215)
170 PRK13703 conjugal pilus assemb 97.5 0.00047 1E-08 47.1 6.2 68 2-70 136-212 (248)
171 PRK13972 GSH-dependent disulfi 97.5 0.0011 2.3E-08 43.8 7.8 72 13-86 2-80 (215)
172 PLN02395 glutathione S-transfe 97.5 0.00096 2.1E-08 43.8 7.6 72 13-86 3-74 (215)
173 cd03078 GST_N_Metaxin1_like GS 97.5 0.0013 2.7E-08 36.7 7.0 57 19-86 14-70 (73)
174 cd02972 DsbA_family DsbA famil 97.5 0.00079 1.7E-08 38.1 6.3 22 13-34 1-22 (98)
175 PF07315 DUF1462: Protein of u 97.4 0.0011 2.3E-08 38.4 6.1 64 14-77 1-80 (93)
176 KOG1422 Intracellular Cl- chan 97.4 0.0013 2.9E-08 43.7 7.4 63 20-86 20-82 (221)
177 cd03009 TryX_like_TryX_NRX Try 97.4 0.0028 6.1E-08 38.6 8.4 20 13-32 22-41 (131)
178 cd02964 TryX_like_family Trypa 97.4 0.0015 3.3E-08 40.0 7.2 20 13-32 21-40 (132)
179 PF06764 DUF1223: Protein of u 97.4 0.0004 8.7E-09 46.1 4.7 67 13-79 2-86 (202)
180 PTZ00443 Thioredoxin domain-co 97.4 0.0013 2.8E-08 44.4 7.1 58 13-75 56-119 (224)
181 cd02995 PDI_a_PDI_a'_C PDIa fa 97.3 0.0003 6.6E-09 40.8 3.5 52 13-70 22-79 (104)
182 PRK11752 putative S-transferas 97.3 0.0018 3.8E-08 44.4 7.7 75 10-86 42-126 (264)
183 cd03008 TryX_like_RdCVF Trypar 97.3 0.0017 3.8E-08 41.0 6.5 21 13-33 29-49 (146)
184 PRK15412 thiol:disulfide inter 97.2 0.0023 5E-08 41.6 6.9 32 13-44 72-106 (185)
185 PRK00293 dipZ thiol:disulfide 97.2 0.0027 5.9E-08 48.1 8.1 60 13-74 478-547 (571)
186 cd03075 GST_N_Mu GST_N family, 97.2 0.0072 1.6E-07 34.2 8.1 71 15-85 3-78 (82)
187 PF13905 Thioredoxin_8: Thiore 97.2 0.0017 3.7E-08 37.2 5.5 47 13-59 5-57 (95)
188 PTZ00102 disulphide isomerase; 97.2 0.0019 4E-08 47.3 6.7 67 4-75 42-119 (477)
189 COG4837 Uncharacterized protei 97.1 0.0015 3.3E-08 38.1 4.7 70 8-77 2-87 (106)
190 cd03010 TlpA_like_DsbE TlpA-li 97.1 0.0033 7.2E-08 38.0 6.5 22 13-34 29-50 (127)
191 TIGR01130 ER_PDI_fam protein d 97.1 0.0025 5.5E-08 46.1 6.8 67 3-74 10-87 (462)
192 TIGR00385 dsbE periplasmic pro 97.1 0.0034 7.3E-08 40.3 6.7 22 13-34 67-88 (173)
193 KOG3425 Uncharacterized conser 97.1 0.0012 2.6E-08 40.3 4.1 54 19-72 43-103 (128)
194 PF02798 GST_N: Glutathione S- 97.0 0.011 2.4E-07 32.9 7.6 69 13-84 3-73 (76)
195 PLN02309 5'-adenylylsulfate re 97.0 0.0041 8.9E-08 46.0 7.3 55 13-70 369-428 (457)
196 COG3019 Predicted metal-bindin 97.0 0.0049 1.1E-07 38.6 6.4 78 9-89 24-104 (149)
197 PRK10542 glutathionine S-trans 97.0 0.0041 8.9E-08 40.4 6.5 72 14-86 2-74 (201)
198 PF06953 ArsD: Arsenical resis 97.0 0.0053 1.2E-07 37.7 6.3 58 26-84 31-94 (123)
199 TIGR00424 APS_reduc 5'-adenyly 97.0 0.0019 4.2E-08 47.8 5.1 56 13-73 375-439 (463)
200 KOG0868 Glutathione S-transfer 96.9 0.0038 8.2E-08 40.9 5.9 75 12-88 5-81 (217)
201 cd02967 mauD Methylamine utili 96.9 0.0077 1.7E-07 35.5 7.0 55 13-69 25-83 (114)
202 cd03079 GST_N_Metaxin2 GST_N f 96.9 0.012 2.5E-07 33.0 7.2 58 19-86 15-72 (74)
203 TIGR02661 MauD methylamine deh 96.9 0.0096 2.1E-07 38.9 7.6 30 13-42 78-111 (189)
204 cd02958 UAS UAS family; UAS is 96.9 0.009 1.9E-07 35.7 6.9 70 2-75 8-91 (114)
205 KOG4244 Failed axon connection 96.8 0.0026 5.7E-08 43.8 4.6 52 21-83 61-112 (281)
206 cd02966 TlpA_like_family TlpA- 96.8 0.0045 9.7E-08 35.7 4.9 22 12-33 22-43 (116)
207 cd02982 PDI_b'_family Protein 96.8 0.0036 7.9E-08 36.3 4.5 54 12-70 15-74 (103)
208 KOG0190 Protein disulfide isom 96.7 0.0063 1.4E-07 45.3 6.4 67 3-74 34-111 (493)
209 PRK03147 thiol-disulfide oxido 96.7 0.011 2.5E-07 37.4 7.0 19 13-31 65-83 (173)
210 cd02960 AGR Anterior Gradient 96.7 0.0031 6.7E-08 39.1 3.8 30 2-31 14-45 (130)
211 PTZ00057 glutathione s-transfe 96.6 0.027 5.9E-07 36.9 8.4 73 12-84 4-78 (205)
212 KOG2501 Thioredoxin, nucleored 96.6 0.0047 1E-07 39.4 4.5 52 7-58 30-89 (157)
213 cd03011 TlpA_like_ScsD_MtbDsbE 96.6 0.0084 1.8E-07 35.8 5.5 32 12-43 23-54 (123)
214 KOG0867 Glutathione S-transfer 96.6 0.014 3.1E-07 39.1 7.0 74 12-86 2-75 (226)
215 PTZ00102 disulphide isomerase; 96.6 0.0027 5.8E-08 46.5 3.7 22 13-34 379-400 (477)
216 COG3634 AhpF Alkyl hydroperoxi 96.5 0.0063 1.4E-07 44.0 5.0 62 12-78 119-183 (520)
217 smart00594 UAS UAS domain. 96.5 0.033 7.2E-07 33.8 7.6 65 2-70 18-92 (122)
218 PRK11657 dsbG disulfide isomer 96.5 0.0033 7.2E-08 43.0 3.3 21 12-32 120-140 (251)
219 PF03190 Thioredox_DsbH: Prote 96.4 0.012 2.5E-07 38.0 5.3 74 3-76 29-117 (163)
220 KOG0908 Thioredoxin-like prote 96.3 0.0078 1.7E-07 41.3 4.4 56 13-75 25-87 (288)
221 COG5494 Predicted thioredoxin/ 96.3 0.021 4.6E-07 38.3 6.0 68 12-86 12-85 (265)
222 PF06110 DUF953: Eukaryotic pr 96.2 0.0023 5E-08 39.1 1.1 52 19-70 36-95 (119)
223 cd03007 PDI_a_ERp29_N PDIa fam 96.2 0.08 1.7E-06 32.2 7.8 68 4-73 11-91 (116)
224 PF08534 Redoxin: Redoxin; In 96.1 0.07 1.5E-06 32.8 7.6 35 13-47 32-74 (146)
225 PHA03075 glutaredoxin-like pro 96.0 0.012 2.5E-07 35.8 3.7 33 12-44 4-36 (123)
226 cd03012 TlpA_like_DipZ_like Tl 96.0 0.062 1.3E-06 32.4 6.9 55 13-69 27-91 (126)
227 KOG0912 Thiol-disulfide isomer 96.0 0.0097 2.1E-07 42.0 3.5 34 3-36 5-40 (375)
228 PTZ00056 glutathione peroxidas 96.0 0.038 8.2E-07 36.5 6.2 19 13-31 43-61 (199)
229 COG4232 Thiol:disulfide interc 95.9 0.015 3.3E-07 44.0 4.6 67 3-70 464-540 (569)
230 COG2143 Thioredoxin-related pr 95.9 0.055 1.2E-06 34.8 6.4 19 13-31 46-64 (182)
231 COG5429 Uncharacterized secret 95.9 0.016 3.6E-07 39.3 4.2 28 13-40 45-72 (261)
232 KOG4420 Uncharacterized conser 95.8 0.0062 1.3E-07 42.1 2.1 75 13-88 27-101 (325)
233 PF10568 Tom37: Outer mitochon 95.8 0.09 1.9E-06 29.2 6.3 55 20-85 13-71 (72)
234 PRK14018 trifunctional thiored 95.5 0.038 8.2E-07 41.6 5.2 22 13-34 60-81 (521)
235 cd03023 DsbA_Com1_like DsbA fa 95.5 0.009 1.9E-07 36.8 1.7 24 10-33 6-29 (154)
236 cd00340 GSH_Peroxidase Glutath 95.4 0.057 1.2E-06 33.8 5.3 55 13-69 26-92 (152)
237 KOG1695 Glutathione S-transfer 95.4 0.18 3.9E-06 33.7 7.7 71 11-85 2-72 (206)
238 TIGR01130 ER_PDI_fam protein d 95.3 0.043 9.2E-07 39.8 5.1 21 13-33 368-388 (462)
239 PLN02412 probable glutathione 95.2 0.14 3.1E-06 32.6 6.8 16 13-28 33-48 (167)
240 cd02968 SCO SCO (an acronym fo 95.2 0.12 2.6E-06 31.5 6.2 56 12-69 25-92 (142)
241 TIGR01626 ytfJ_HI0045 conserve 95.2 0.13 2.7E-06 33.8 6.5 35 12-46 62-105 (184)
242 PF02114 Phosducin: Phosducin; 95.2 0.086 1.9E-06 36.5 5.8 82 13-100 150-240 (265)
243 PF00578 AhpC-TSA: AhpC/TSA fa 95.1 0.09 1.9E-06 31.2 5.3 55 13-70 29-89 (124)
244 PF04134 DUF393: Protein of un 94.9 0.097 2.1E-06 31.1 4.9 69 15-87 1-76 (114)
245 PTZ00256 glutathione peroxidas 94.9 0.15 3.2E-06 33.1 6.1 18 14-31 46-63 (183)
246 cd02970 PRX_like2 Peroxiredoxi 94.6 0.13 2.8E-06 31.5 5.1 20 13-32 27-47 (149)
247 PLN02399 phospholipid hydroper 94.5 0.2 4.3E-06 34.1 6.2 19 13-31 103-121 (236)
248 KOG4277 Uncharacterized conser 94.5 0.047 1E-06 38.7 3.2 61 13-75 47-112 (468)
249 PLN02919 haloacid dehalogenase 94.2 0.23 5E-06 40.5 7.0 22 13-34 424-445 (1057)
250 TIGR03137 AhpC peroxiredoxin. 94.2 0.23 4.9E-06 32.3 5.9 34 11-44 32-74 (187)
251 cd03019 DsbA_DsbA DsbA family, 94.0 0.057 1.2E-06 34.2 2.6 23 10-32 16-38 (178)
252 TIGR02540 gpx7 putative glutat 93.8 0.39 8.5E-06 29.9 6.3 17 13-29 26-42 (153)
253 cd02969 PRX_like1 Peroxiredoxi 93.8 0.49 1.1E-05 30.0 6.7 19 13-31 29-47 (171)
254 cd05295 MDH_like Malate dehydr 93.8 0.26 5.7E-06 36.6 6.0 68 18-86 1-82 (452)
255 cd03017 PRX_BCP Peroxiredoxin 93.6 0.64 1.4E-05 28.1 6.8 51 13-68 27-85 (140)
256 COG0526 TrxA Thiol-disulfide i 93.4 0.074 1.6E-06 30.1 2.3 19 16-34 39-57 (127)
257 PF13462 Thioredoxin_4: Thiore 93.3 0.095 2.1E-06 32.6 2.8 22 63-84 135-156 (162)
258 TIGR03759 conj_TIGR03759 integ 93.1 0.45 9.8E-06 31.6 5.7 49 10-58 109-157 (200)
259 KOG0190 Protein disulfide isom 93.1 0.041 8.9E-07 41.1 0.9 27 13-39 388-414 (493)
260 cd03016 PRX_1cys Peroxiredoxin 93.0 0.36 7.9E-06 31.8 5.3 30 16-45 33-69 (203)
261 PRK13190 putative peroxiredoxi 92.8 0.36 7.7E-06 31.9 5.1 30 16-45 35-71 (202)
262 PF13462 Thioredoxin_4: Thiore 92.7 0.3 6.5E-06 30.3 4.4 20 12-31 15-34 (162)
263 cd03015 PRX_Typ2cys Peroxiredo 92.7 0.59 1.3E-05 29.8 5.8 20 12-31 31-52 (173)
264 cd03018 PRX_AhpE_like Peroxire 92.7 1.1 2.4E-05 27.4 6.9 19 13-31 32-51 (149)
265 PRK13599 putative peroxiredoxi 92.6 0.41 8.9E-06 32.0 5.2 38 15-52 35-79 (215)
266 cd02971 PRX_family Peroxiredox 92.6 0.93 2E-05 27.4 6.4 19 13-31 26-45 (140)
267 KOG0191 Thioredoxin/protein di 92.5 0.15 3.3E-06 36.7 3.2 55 11-70 49-107 (383)
268 PRK09437 bcp thioredoxin-depen 91.8 0.86 1.9E-05 28.3 5.7 18 10-27 30-49 (154)
269 PRK13189 peroxiredoxin; Provis 91.6 0.65 1.4E-05 31.2 5.3 30 16-45 43-79 (222)
270 cd03022 DsbA_HCCA_Iso DsbA fam 91.5 0.55 1.2E-05 30.0 4.7 26 60-85 163-188 (192)
271 PRK13191 putative peroxiredoxi 91.4 0.69 1.5E-05 30.9 5.2 38 15-52 40-84 (215)
272 PRK15000 peroxidase; Provision 91.2 1.1 2.5E-05 29.5 6.0 22 10-31 34-57 (200)
273 cd03010 TlpA_like_DsbE TlpA-li 91.0 1.8 4E-05 25.8 6.4 65 4-75 47-114 (127)
274 PF10865 DUF2703: Domain of un 90.8 1 2.2E-05 27.6 5.0 48 20-75 14-72 (120)
275 PRK10382 alkyl hydroperoxide r 90.7 0.88 1.9E-05 29.8 5.1 17 12-28 33-51 (187)
276 TIGR03143 AhpF_homolog putativ 89.9 0.94 2E-05 34.3 5.3 52 12-70 369-425 (555)
277 KOG0913 Thiol-disulfide isomer 89.9 0.074 1.6E-06 36.2 -0.5 62 5-73 35-105 (248)
278 PRK11509 hydrogenase-1 operon 89.9 1.8 3.8E-05 27.0 5.7 52 20-78 47-107 (132)
279 KOG3171 Conserved phosducin-li 89.6 1.3 2.7E-05 30.1 5.1 79 16-100 166-253 (273)
280 cd03023 DsbA_Com1_like DsbA fa 89.4 0.76 1.6E-05 28.0 3.8 26 60-85 125-150 (154)
281 KOG0914 Thioredoxin-like prote 89.1 0.29 6.3E-06 33.2 1.8 64 13-77 148-220 (265)
282 PRK10606 btuE putative glutath 89.0 2.2 4.7E-05 27.9 5.9 60 13-73 29-102 (183)
283 PF01323 DSBA: DSBA-like thior 88.9 0.46 1E-05 30.4 2.7 33 12-44 1-38 (193)
284 KOG1672 ATP binding protein [P 88.4 0.96 2.1E-05 30.1 3.8 90 3-99 77-179 (211)
285 PTZ00137 2-Cys peroxiredoxin; 87.9 2.5 5.4E-05 29.3 5.9 37 9-45 97-142 (261)
286 KOG0191 Thioredoxin/protein di 87.8 1.6 3.4E-05 31.5 5.1 36 11-46 164-205 (383)
287 COG0041 PurE Phosphoribosylcar 87.5 4.5 9.9E-05 26.0 6.3 68 16-83 10-101 (162)
288 COG1331 Highly conserved prote 86.4 5.9 0.00013 31.1 7.6 70 3-75 35-122 (667)
289 cd03021 DsbA_GSTK DsbA family, 86.1 1.5 3.3E-05 28.8 4.0 28 12-39 2-33 (209)
290 KOG1731 FAD-dependent sulfhydr 85.9 0.35 7.6E-06 36.9 0.9 66 13-78 61-139 (606)
291 cd03014 PRX_Atyp2cys Peroxired 85.9 1.6 3.5E-05 26.6 3.8 21 11-31 27-49 (143)
292 COG1999 Uncharacterized protei 85.3 4.9 0.00011 26.7 6.1 59 13-72 71-139 (207)
293 PTZ00253 tryparedoxin peroxida 84.6 3.4 7.4E-05 27.0 5.1 34 13-46 39-81 (199)
294 cd03013 PRX5_like Peroxiredoxi 84.5 3.1 6.8E-05 26.2 4.7 23 5-27 24-48 (155)
295 PF11009 DUF2847: Protein of u 83.9 7.1 0.00015 23.4 6.3 72 3-77 9-93 (105)
296 TIGR01162 purE phosphoribosyla 83.1 6 0.00013 25.4 5.5 71 16-86 6-100 (156)
297 PF02630 SCO1-SenC: SCO1/SenC; 82.6 8.4 0.00018 24.7 6.2 48 13-60 56-114 (174)
298 PF03575 Peptidase_S51: Peptid 82.4 7.6 0.00017 24.3 5.8 64 23-96 1-64 (154)
299 PRK10954 periplasmic protein d 82.4 0.94 2E-05 29.9 1.7 19 11-29 39-57 (207)
300 COG3011 Predicted thiol-disulf 81.3 11 0.00024 23.7 7.8 72 8-83 5-81 (137)
301 PRK00522 tpx lipid hydroperoxi 81.2 6 0.00013 25.1 5.1 32 13-44 48-83 (167)
302 TIGR00385 dsbE periplasmic pro 80.5 9.5 0.00021 24.2 5.9 56 13-75 93-151 (173)
303 PRK10954 periplasmic protein d 80.3 3.1 6.8E-05 27.4 3.7 21 60-80 163-183 (207)
304 PF01323 DSBA: DSBA-like thior 80.0 3.3 7.2E-05 26.3 3.6 26 60-85 163-189 (193)
305 PF11287 DUF3088: Protein of u 79.3 6.7 0.00014 23.8 4.5 51 20-72 23-76 (112)
306 cd03024 DsbA_FrnE DsbA family, 79.3 4.1 8.8E-05 26.2 3.9 24 60-83 171-195 (201)
307 cd03025 DsbA_FrnE_like DsbA fa 77.7 1.7 3.6E-05 27.8 1.7 21 12-32 2-22 (193)
308 PF04566 RNA_pol_Rpb2_4: RNA p 77.5 2.2 4.7E-05 23.1 1.9 17 68-84 1-17 (63)
309 COG3340 PepE Peptidase E [Amin 77.4 20 0.00043 24.4 8.8 81 3-92 23-110 (224)
310 COG2761 FrnE Predicted dithiol 76.3 1.5 3.3E-05 29.7 1.2 21 12-32 7-27 (225)
311 cd03022 DsbA_HCCA_Iso DsbA fam 75.9 3 6.6E-05 26.5 2.6 29 13-41 1-33 (192)
312 cd03024 DsbA_FrnE DsbA family, 75.6 2.1 4.5E-05 27.6 1.8 19 13-31 1-19 (201)
313 PF09413 DUF2007: Domain of un 75.5 4 8.7E-05 21.7 2.6 53 13-73 1-53 (67)
314 COG1651 DsbG Protein-disulfide 75.3 3.9 8.4E-05 27.3 3.0 24 60-83 211-234 (244)
315 TIGR03190 benz_CoA_bzdN benzoy 74.9 13 0.00028 27.0 5.8 13 64-76 343-355 (377)
316 PF03227 GILT: Gamma interfero 74.9 3 6.6E-05 24.7 2.2 16 12-27 2-17 (108)
317 cd02974 AhpF_NTD_N Alkyl hydro 73.7 5.9 0.00013 23.0 3.2 23 12-35 22-44 (94)
318 cd03019 DsbA_DsbA DsbA family, 73.5 5.8 0.00013 24.8 3.4 21 60-80 139-159 (178)
319 TIGR03239 GarL 2-dehydro-3-deo 73.0 24 0.00052 24.2 6.4 82 3-88 2-84 (249)
320 PF15643 Tox-PL-2: Papain fold 72.0 12 0.00026 22.2 4.2 40 3-45 4-46 (100)
321 COG1651 DsbG Protein-disulfide 71.9 6.6 0.00014 26.2 3.5 20 12-31 87-106 (244)
322 KOG3414 Component of the U4/U6 71.6 21 0.00045 22.3 5.3 33 3-35 13-49 (142)
323 PF00731 AIRC: AIR carboxylase 70.0 8.4 0.00018 24.5 3.4 47 13-59 3-51 (150)
324 PF00004 AAA: ATPase family as 69.5 13 0.00028 21.7 4.1 60 13-72 1-66 (132)
325 PF06420 Mgm101p: Mitochondria 68.7 29 0.00062 22.6 5.6 83 15-100 7-125 (171)
326 PF09822 ABC_transp_aux: ABC-t 68.4 17 0.00037 24.8 5.0 46 3-48 19-75 (271)
327 cd08183 Fe-ADH2 Iron-containin 68.3 42 0.00091 24.2 7.3 71 11-81 23-93 (374)
328 TIGR03439 methyl_EasF probable 67.9 13 0.00029 26.4 4.5 61 18-82 82-145 (319)
329 cd03008 TryX_like_RdCVF Trypar 66.9 29 0.00063 21.8 7.6 59 12-75 65-126 (146)
330 KOG3027 Mitochondrial outer me 66.7 16 0.00036 24.8 4.4 66 19-94 32-99 (257)
331 PF00282 Pyridoxal_deC: Pyrido 66.5 21 0.00045 25.9 5.3 73 10-84 139-216 (373)
332 PF13353 Fer4_12: 4Fe-4S singl 65.3 12 0.00026 22.5 3.5 14 12-25 7-23 (139)
333 PF06053 DUF929: Domain of unk 65.1 4.6 0.0001 27.8 1.7 23 13-35 62-88 (249)
334 PLN02590 probable tyrosine dec 64.6 45 0.00097 25.6 6.9 72 11-85 228-310 (539)
335 cd00897 UGPase_euk Eukaryotic 64.3 49 0.0011 23.5 7.1 25 76-101 115-139 (300)
336 cd03035 ArsC_Yffb Arsenate Red 64.1 9.6 0.00021 22.5 2.7 59 22-80 36-105 (105)
337 cd02991 UAS_ETEA UAS family, E 63.9 29 0.00063 20.8 7.0 61 2-70 8-82 (116)
338 TIGR01689 EcbF-BcbF capsule bi 61.8 28 0.0006 21.4 4.6 19 26-44 68-86 (126)
339 PF11399 DUF3192: Protein of u 61.6 7 0.00015 23.3 1.8 16 63-78 80-95 (102)
340 PRK10558 alpha-dehydro-beta-de 61.6 50 0.0011 22.7 6.9 70 2-72 8-78 (256)
341 PF13344 Hydrolase_6: Haloacid 60.3 32 0.00068 20.0 5.2 56 2-59 21-77 (101)
342 TIGR03865 PQQ_CXXCW PQQ-depend 60.3 18 0.00039 23.0 3.7 29 9-37 115-143 (162)
343 cd03082 TRX_Fd_NuoE_W_FDH_beta 59.1 15 0.00033 20.1 2.8 27 60-86 42-70 (72)
344 PLN02948 phosphoribosylaminoim 58.2 53 0.0012 25.4 6.4 75 13-87 413-513 (577)
345 cd02127 PA_hPAP21_like PA_hPAP 56.9 26 0.00056 21.1 3.8 61 11-73 35-97 (118)
346 TIGR00014 arsC arsenate reduct 56.6 33 0.00072 20.4 4.2 29 52-80 79-107 (114)
347 PRK15348 type III secretion sy 56.1 37 0.00081 23.5 4.8 89 8-97 16-119 (249)
348 cd05565 PTS_IIB_lactose PTS_II 56.0 34 0.00075 20.1 4.1 54 23-76 16-84 (99)
349 PF12689 Acid_PPase: Acid Phos 55.4 47 0.001 21.5 5.0 62 11-73 60-133 (169)
350 COG2256 MGS1 ATPase related to 54.9 51 0.0011 24.7 5.5 70 4-74 39-114 (436)
351 PRK07758 hypothetical protein; 54.8 12 0.00025 22.1 1.9 13 13-25 14-26 (95)
352 cd04911 ACT_AKiii-YclM-BS_1 AC 54.6 18 0.0004 20.3 2.6 21 21-41 15-35 (76)
353 PF00763 THF_DHG_CYH: Tetrahyd 54.4 38 0.00082 20.3 4.2 60 12-71 31-94 (117)
354 TIGR00635 ruvB Holliday juncti 53.7 71 0.0015 22.0 7.2 59 12-73 32-90 (305)
355 PRK15317 alkyl hydroperoxide r 53.3 18 0.00039 27.2 3.2 23 12-35 22-44 (517)
356 cd04335 PrdX_deacylase This CD 52.5 55 0.0012 20.3 5.0 45 25-70 2-46 (156)
357 PF07728 AAA_5: AAA domain (dy 52.0 47 0.001 19.8 4.5 40 12-51 1-40 (139)
358 TIGR00853 pts-lac PTS system, 51.7 46 0.00099 19.2 5.1 57 22-78 18-89 (95)
359 PF01704 UDPGP: UTP--glucose-1 51.7 73 0.0016 23.7 6.0 77 24-101 92-194 (420)
360 PRK15412 thiol:disulfide inter 50.9 64 0.0014 20.7 6.0 40 25-71 110-150 (185)
361 KOG2672 Lipoate synthase [Coen 50.9 46 0.001 23.8 4.6 75 12-88 113-214 (360)
362 cd00755 YgdL_like Family of ac 50.3 32 0.0007 23.3 3.8 30 16-45 151-182 (231)
363 cd03036 ArsC_like Arsenate Red 50.1 36 0.00077 20.1 3.6 30 51-80 79-108 (111)
364 TIGR03757 conj_TIGR03757 integ 49.9 57 0.0012 19.8 4.6 24 60-83 80-104 (113)
365 KOG1734 Predicted RING-contain 49.9 10 0.00022 26.7 1.3 12 18-29 270-281 (328)
366 PLN02880 tyrosine decarboxylas 49.9 79 0.0017 23.9 6.1 73 11-84 180-261 (490)
367 PF07908 D-aminoacyl_C: D-amin 49.6 16 0.00035 18.4 1.8 16 63-78 18-33 (48)
368 cd06387 PBP1_iGluR_AMPA_GluR3 49.5 99 0.0021 22.4 6.5 79 3-82 55-144 (372)
369 PLN00020 ribulose bisphosphate 49.5 68 0.0015 23.9 5.5 60 13-72 151-220 (413)
370 KOG2603 Oligosaccharyltransfer 49.1 68 0.0015 23.1 5.3 52 13-71 64-133 (331)
371 COG4107 PhnK ABC-type phosphon 48.6 45 0.00098 22.4 4.1 75 25-99 129-203 (258)
372 COG3760 Uncharacterized conser 48.5 29 0.00062 22.3 3.0 46 25-71 6-51 (164)
373 cd08170 GlyDH Glycerol dehydro 48.5 97 0.0021 22.0 6.9 49 11-59 23-73 (351)
374 cd08193 HVD 5-hydroxyvalerate 48.5 1E+02 0.0022 22.2 6.9 71 11-81 27-101 (376)
375 PF14606 Lipase_GDSL_3: GDSL-l 48.5 61 0.0013 21.2 4.7 47 25-71 49-100 (178)
376 PF02288 Dehydratase_MU: Dehyd 48.4 60 0.0013 19.6 4.5 43 11-53 3-48 (112)
377 PRK04195 replication factor C 48.0 1.2E+02 0.0025 22.8 7.7 49 10-58 39-87 (482)
378 PF13905 Thioredoxin_8: Thiore 47.8 48 0.001 18.3 7.0 56 10-70 33-88 (95)
379 KOG2863 RNA lariat debranching 47.4 22 0.00047 26.3 2.7 25 50-74 59-85 (456)
380 TIGR03140 AhpF alkyl hydropero 47.2 25 0.00055 26.4 3.2 23 12-35 22-44 (515)
381 cd08192 Fe-ADH7 Iron-containin 46.7 1.1E+02 0.0023 22.0 6.9 71 11-81 25-99 (370)
382 KOG4700 Uncharacterized homolo 46.4 57 0.0012 21.7 4.2 35 52-86 101-136 (207)
383 cd04336 YeaK YeaK is an unchar 46.3 59 0.0013 20.0 4.4 26 25-50 2-27 (153)
384 PRK00766 hypothetical protein; 46.1 41 0.0009 22.3 3.7 45 36-80 43-87 (194)
385 PF07511 DUF1525: Protein of u 46.1 67 0.0015 19.5 4.8 24 60-83 79-103 (114)
386 PF03470 zf-XS: XS zinc finger 46.0 6.3 0.00014 19.7 -0.1 6 21-26 1-6 (43)
387 COG0450 AhpC Peroxiredoxin [Po 45.9 81 0.0018 21.0 5.0 57 13-69 36-103 (194)
388 PF15616 TerY-C: TerY-C metal 45.9 6.5 0.00014 24.5 -0.1 13 15-27 74-86 (131)
389 cd08186 Fe-ADH8 Iron-containin 45.5 1.2E+02 0.0025 22.1 6.7 71 11-81 27-102 (383)
390 PF15379 DUF4606: Domain of un 45.3 20 0.00043 21.4 1.9 22 12-33 25-46 (104)
391 cd05564 PTS_IIB_chitobiose_lic 45.2 60 0.0013 18.7 5.0 58 22-79 14-86 (96)
392 TIGR01616 nitro_assoc nitrogen 44.3 48 0.001 20.3 3.6 59 22-80 38-106 (126)
393 KOG3490 Transcription elongati 44.3 70 0.0015 19.2 5.0 27 13-43 20-46 (111)
394 TIGR02263 benz_CoA_red_C benzo 44.2 82 0.0018 22.9 5.3 6 65-70 352-357 (380)
395 KOG4749 Inositol polyphosphate 43.8 47 0.001 24.1 3.9 58 20-78 156-219 (375)
396 PF02966 DIM1: Mitosis protein 43.8 71 0.0015 20.0 4.2 55 16-75 27-87 (133)
397 KOG3160 Gamma-interferon induc 43.4 22 0.00047 24.1 2.1 17 11-27 41-57 (220)
398 cd08176 LPO Lactadehyde:propan 43.3 1.2E+02 0.0027 21.8 6.2 49 11-59 29-81 (377)
399 PF08599 Nbs1_C: DNA damage re 42.9 18 0.00039 19.6 1.3 32 60-97 13-45 (65)
400 PF02780 Transketolase_C: Tran 42.8 40 0.00087 20.0 3.1 66 11-80 10-78 (124)
401 COG1927 Mtd Coenzyme F420-depe 42.7 1.1E+02 0.0024 21.0 6.8 12 90-101 140-151 (277)
402 cd08185 Fe-ADH1 Iron-containin 42.2 1.3E+02 0.0028 21.7 6.8 48 11-58 26-78 (380)
403 cd07973 Spt4 Transcription elo 42.1 39 0.00084 19.9 2.8 11 16-26 18-28 (98)
404 PF05673 DUF815: Protein of un 41.8 1.2E+02 0.0025 21.1 6.1 65 10-75 52-117 (249)
405 PF14237 DUF4339: Domain of un 41.8 31 0.00067 16.9 2.1 23 69-91 5-29 (45)
406 PF14437 MafB19-deam: MafB19-l 41.7 91 0.002 19.8 4.6 28 11-38 100-129 (146)
407 COG1628 Endonuclease V homolog 41.6 57 0.0012 21.6 3.8 50 35-85 41-92 (185)
408 COG1223 Predicted ATPase (AAA+ 41.4 82 0.0018 22.6 4.7 62 8-71 149-217 (368)
409 KOG3170 Conserved phosducin-li 41.2 41 0.00089 22.8 3.1 51 16-71 118-168 (240)
410 PRK00994 F420-dependent methyl 41.1 1.2E+02 0.0027 21.1 6.9 84 12-102 62-152 (277)
411 KOG1467 Translation initiation 41.0 1.2E+02 0.0026 23.4 5.7 61 6-70 355-416 (556)
412 cd08188 Fe-ADH4 Iron-containin 40.6 1.4E+02 0.003 21.6 6.6 69 11-79 29-101 (377)
413 cd03129 GAT1_Peptidase_E_like 40.1 1.1E+02 0.0023 20.1 9.8 78 10-96 29-110 (210)
414 PRK15116 sulfur acceptor prote 40.1 58 0.0012 22.7 3.8 22 16-37 170-192 (268)
415 PLN02234 1-deoxy-D-xylulose-5- 39.8 1.1E+02 0.0024 24.2 5.7 78 12-93 546-627 (641)
416 PF13743 Thioredoxin_5: Thiore 39.5 32 0.00069 22.1 2.4 19 15-33 2-20 (176)
417 TIGR02654 circ_KaiB circadian 39.2 76 0.0016 18.3 3.6 64 13-83 6-81 (87)
418 PF11238 DUF3039: Protein of u 39.0 21 0.00044 19.0 1.2 13 19-31 45-57 (58)
419 PRK02935 hypothetical protein; 38.9 11 0.00024 22.6 0.2 15 20-34 72-86 (110)
420 PF10087 DUF2325: Uncharacteri 38.3 78 0.0017 18.0 6.8 36 5-40 43-80 (97)
421 COG2331 Uncharacterized protei 38.0 16 0.00035 20.6 0.7 20 20-39 35-55 (82)
422 cd01896 DRG The developmentall 37.6 97 0.0021 20.7 4.6 49 23-73 137-185 (233)
423 KOG0780 Signal recognition par 37.6 1.5E+02 0.0032 22.5 5.6 87 4-94 208-304 (483)
424 PF14793 DUF4478: Domain of un 37.5 25 0.00054 21.3 1.5 14 67-80 82-95 (112)
425 PRK09301 circadian clock prote 37.5 81 0.0018 18.8 3.7 66 12-84 8-85 (103)
426 PF04805 Pox_E10: E10-like pro 37.3 36 0.00077 18.7 1.9 17 20-36 17-34 (70)
427 PF13364 BetaGal_dom4_5: Beta- 37.3 30 0.00066 20.5 1.9 17 63-79 62-78 (111)
428 KOG0079 GTP-binding protein H- 37.1 52 0.0011 21.4 3.0 48 25-72 68-120 (198)
429 TIGR00011 YbaK_EbsC ybaK/ebsC 37.1 79 0.0017 19.5 3.9 22 26-47 2-23 (152)
430 KOG1611 Predicted short chain- 36.7 1.4E+02 0.0031 20.6 5.9 70 2-72 18-92 (249)
431 TIGR03191 benz_CoA_bzdO benzoy 36.5 69 0.0015 23.8 4.0 48 25-76 351-403 (430)
432 CHL00195 ycf46 Ycf46; Provisio 36.0 1.6E+02 0.0034 22.5 5.8 34 11-44 260-293 (489)
433 cd00002 YbaK_deacylase This CD 35.8 76 0.0016 19.6 3.7 22 26-47 3-24 (152)
434 PF03691 UPF0167: Uncharacteri 35.7 49 0.0011 21.7 2.8 73 20-97 51-136 (176)
435 cd04816 PA_SaNapH_like PA_SaNa 35.6 98 0.0021 18.4 4.7 31 10-41 43-73 (122)
436 PF04512 Baculo_PEP_N: Baculov 35.5 48 0.001 19.5 2.5 24 63-86 3-27 (97)
437 PRK08118 topology modulation p 35.4 72 0.0016 20.2 3.5 32 11-42 2-33 (167)
438 PF12949 HeH: HeH/LEM domain; 35.1 30 0.00066 16.4 1.3 15 25-39 7-21 (35)
439 TIGR01686 FkbH FkbH-like domai 34.9 1.6E+02 0.0035 20.7 6.8 62 11-74 46-113 (320)
440 KOG0078 GTP-binding protein SE 34.8 1.4E+02 0.0031 20.1 5.1 52 21-73 72-126 (207)
441 PRK11700 hypothetical protein; 34.4 71 0.0015 21.2 3.4 57 20-78 17-80 (187)
442 TIGR02311 HpaI 2,4-dihydroxyhe 34.2 1.5E+02 0.0033 20.2 6.5 70 3-73 2-72 (249)
443 PF13394 Fer4_14: 4Fe-4S singl 34.0 69 0.0015 18.6 3.1 19 65-83 49-69 (119)
444 cd06388 PBP1_iGluR_AMPA_GluR4 33.5 1.8E+02 0.004 20.9 7.1 80 3-83 55-145 (371)
445 cd01781 AF6_RA_repeat2 Ubiquit 33.4 1.1E+02 0.0023 18.2 4.7 32 35-66 14-46 (100)
446 cd04732 HisA HisA. Phosphorib 33.2 1.3E+02 0.0027 19.9 4.6 61 26-88 33-95 (234)
447 cd08182 HEPD Hydroxyethylphosp 33.1 1.8E+02 0.004 20.8 7.0 47 11-57 24-71 (367)
448 TIGR03521 GldG gliding-associa 32.7 2.1E+02 0.0046 22.0 6.2 45 4-48 43-97 (552)
449 PF01949 DUF99: Protein of unk 32.6 30 0.00064 22.9 1.4 44 36-80 37-80 (187)
450 PF14424 Toxin-deaminase: The 32.5 72 0.0016 19.8 3.1 23 11-33 97-120 (133)
451 PF11711 Tim54: Inner membrane 32.4 1.5E+02 0.0033 21.9 5.1 38 10-47 67-113 (382)
452 KOG2869 Meiotic cell division 32.3 79 0.0017 23.1 3.5 76 16-99 242-317 (379)
453 TIGR03567 FMN_reduc_SsuE FMN r 32.2 1.3E+02 0.0029 18.9 5.6 33 2-34 57-91 (171)
454 PF11521 TFIIE-A_C-term: C-ter 32.1 40 0.00087 19.4 1.7 13 64-76 39-51 (86)
455 COG4727 Uncharacterized protei 32.1 37 0.0008 23.5 1.8 43 24-76 195-237 (287)
456 COG1832 Predicted CoA-binding 32.0 1.4E+02 0.0029 18.9 5.7 42 2-45 7-51 (140)
457 cd03145 GAT1_cyanophycinase Ty 31.9 1.6E+02 0.0034 19.6 8.5 56 11-72 30-91 (217)
458 COG4896 Uncharacterized protei 31.9 55 0.0012 17.7 2.1 20 5-27 21-40 (68)
459 cd08551 Fe-ADH iron-containing 31.9 1.9E+02 0.0042 20.7 6.7 68 11-78 24-95 (370)
460 TIGR03167 tRNA_sel_U_synt tRNA 31.8 1.9E+02 0.0041 20.6 7.0 73 12-88 76-150 (311)
461 PF00403 HMA: Heavy-metal-asso 31.7 78 0.0017 16.1 4.2 20 18-37 6-27 (62)
462 COG4566 TtrR Response regulato 31.7 1.4E+02 0.0031 20.0 4.4 37 48-88 62-98 (202)
463 PF01924 HypD: Hydrogenase for 31.4 39 0.00085 24.6 1.9 16 10-25 46-61 (355)
464 TIGR01702 CO_DH_cata carbon-mo 31.4 57 0.0012 25.7 2.9 36 65-100 245-280 (621)
465 cd03146 GAT1_Peptidase_E Type 31.3 1.6E+02 0.0034 19.4 8.5 74 12-97 33-110 (212)
466 PF11008 DUF2846: Protein of u 31.0 43 0.00093 19.9 1.9 16 63-78 40-55 (117)
467 PF01257 2Fe-2S_thioredx: Thio 30.6 59 0.0013 20.2 2.5 19 61-79 115-133 (145)
468 PF04352 ProQ: ProQ/FINO famil 30.5 1.3E+02 0.0027 18.1 4.4 35 63-97 72-106 (114)
469 PF01522 Polysacc_deac_1: Poly 30.5 32 0.0007 19.9 1.3 27 12-38 96-122 (123)
470 PF02225 PA: PA domain; Inter 30.3 87 0.0019 17.4 3.0 58 10-72 33-91 (101)
471 KOG2454 Betaine aldehyde dehyd 30.2 87 0.0019 23.6 3.5 38 6-43 212-254 (583)
472 CHL00144 odpB pyruvate dehydro 30.1 1.9E+02 0.004 20.7 5.2 65 12-80 203-270 (327)
473 TIGR02260 benz_CoA_red_B benzo 30.1 2.1E+02 0.0046 21.2 5.6 9 65-73 382-390 (413)
474 PRK04016 DNA-directed RNA poly 30.1 67 0.0015 17.3 2.3 33 69-101 8-42 (62)
475 cd04731 HisF The cyclase subun 30.0 1.7E+02 0.0037 19.5 5.0 61 26-88 31-93 (243)
476 PF08308 PEGA: PEGA domain; I 30.0 44 0.00096 17.7 1.7 11 67-77 14-24 (71)
477 COG0602 NrdG Organic radical a 29.9 36 0.00079 22.7 1.5 65 13-84 23-94 (212)
478 PRK09590 celB cellobiose phosp 29.8 1.2E+02 0.0027 17.8 5.6 55 22-76 16-87 (104)
479 cd01444 GlpE_ST GlpE sulfurtra 29.7 1E+02 0.0022 16.8 4.1 27 10-37 56-82 (96)
480 PRK14174 bifunctional 5,10-met 29.7 2.1E+02 0.0045 20.3 6.0 59 12-70 33-95 (295)
481 cd01520 RHOD_YbbB Member of th 29.7 1.3E+02 0.0028 17.9 4.1 33 10-44 86-118 (128)
482 PRK15454 ethanol dehydrogenase 29.6 2.3E+02 0.0049 20.8 6.7 48 11-58 50-101 (395)
483 PRK10624 L-1,2-propanediol oxi 29.6 2.2E+02 0.0048 20.6 6.8 47 11-57 31-81 (382)
484 PRK11892 pyruvate dehydrogenas 29.3 2.3E+02 0.005 21.5 5.7 65 12-80 342-409 (464)
485 PF09369 DUF1998: Domain of un 29.3 39 0.00085 18.7 1.4 35 63-97 33-67 (84)
486 PLN02683 pyruvate dehydrogenas 29.1 1.8E+02 0.004 21.0 5.1 65 12-80 230-297 (356)
487 KOG4030 Uncharacterized conser 29.0 20 0.00044 23.2 0.2 41 35-76 132-172 (197)
488 TIGR00734 hisAF_rel hisA/hisF 28.8 1.7E+02 0.0037 19.6 4.6 63 23-88 142-206 (221)
489 KOG1663 O-methyltransferase [S 28.7 1.5E+02 0.0032 20.5 4.3 70 5-77 119-188 (237)
490 COG0313 Predicted methyltransf 28.7 2.1E+02 0.0046 20.2 5.3 33 21-53 36-68 (275)
491 PRK14180 bifunctional 5,10-met 28.6 2.1E+02 0.0047 20.2 6.0 60 12-71 33-96 (282)
492 KOG3363 Uncharacterized conser 28.4 35 0.00077 22.3 1.2 23 23-45 128-150 (196)
493 PF12156 ATPase-cat_bd: Putati 28.4 54 0.0012 18.7 1.9 18 20-37 28-45 (88)
494 PLN02474 UTP--glucose-1-phosph 28.3 2.7E+02 0.0059 21.2 7.7 25 76-101 191-215 (469)
495 PRK14189 bifunctional 5,10-met 28.3 2.2E+02 0.0047 20.1 6.1 59 12-70 34-96 (285)
496 PRK14167 bifunctional 5,10-met 28.2 2.2E+02 0.0048 20.2 6.0 48 23-70 48-95 (297)
497 cd04333 ProX_deacylase This CD 28.2 1.4E+02 0.0031 18.3 3.9 21 25-45 2-22 (148)
498 PRK14190 bifunctional 5,10-met 28.1 2.2E+02 0.0048 20.1 6.1 59 12-70 34-96 (284)
499 PF09002 DUF1887: Domain of un 28.0 1.7E+02 0.0037 21.3 4.8 43 8-50 25-68 (381)
500 cd06340 PBP1_ABC_ligand_bindin 27.9 1.2E+02 0.0027 21.1 4.0 37 3-39 61-98 (347)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=100.00 E-value=2.3e-35 Score=175.27 Aligned_cols=99 Identities=60% Similarity=1.100 Sum_probs=94.4
Q ss_pred HHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHH
Q 034165 4 VGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMT 83 (102)
Q Consensus 4 l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~ 83 (102)
+++++++++|++|++++||+|.+++++|++++++|.++|||.+++..++++.+.+.++++++|+|||+|++|||++++.+
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 35789999999999999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred HHHcCchHHHHHhcCcccC
Q 034165 84 LQLNGSLKKLLKDAGAIWL 102 (102)
Q Consensus 84 ~~~~g~L~~~L~~~g~~~~ 102 (102)
|+++|+|.++|+++|++|+
T Consensus 81 l~~~G~L~~~l~~~~~~~~ 99 (99)
T TIGR02189 81 LHISGSLVPMLKQAGALWL 99 (99)
T ss_pred HHHcCCHHHHHHHhCcccC
Confidence 9999999999999999985
No 2
>PHA03050 glutaredoxin; Provisional
Probab=100.00 E-value=1e-33 Score=170.44 Aligned_cols=100 Identities=18% Similarity=0.333 Sum_probs=94.0
Q ss_pred hHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCC---CceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeecc
Q 034165 2 DRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGV---SPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSA 78 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~---~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~ 78 (102)
+.+.+++++++|++|++++||||.+++++|+++++ +|+.+||+...+..++++.+.+.+|+.+||+|||||++|||+
T Consensus 4 ~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 4 EFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGY 83 (108)
T ss_pred HHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeCh
Confidence 46888999999999999999999999999999999 799999997666677888999999999999999999999999
Q ss_pred HHHHHHHHcCchHHHHHhcCccc
Q 034165 79 NTVMTLQLNGSLKKLLKDAGAIW 101 (102)
Q Consensus 79 ~~l~~~~~~g~L~~~L~~~g~~~ 101 (102)
+++.+++++|+|.++|+.+|++|
T Consensus 84 ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 84 SDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred HHHHHHHHcCCHHHHHHHccccc
Confidence 99999999999999999999987
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-33 Score=165.14 Aligned_cols=100 Identities=51% Similarity=0.872 Sum_probs=97.0
Q ss_pred hHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHH
Q 034165 2 DRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTV 81 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l 81 (102)
+.++++++.++|++|++++||||++++.+|...++++.++++|.++++.++++++.+.++++++|.|||+|++|||.+++
T Consensus 5 ~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl 84 (104)
T KOG1752|consen 5 AKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDL 84 (104)
T ss_pred HHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchHHHHHhcCccc
Q 034165 82 MTLQLNGSLKKLLKDAGAIW 101 (102)
Q Consensus 82 ~~~~~~g~L~~~L~~~g~~~ 101 (102)
++++.+|+|..+|+.+|++|
T Consensus 85 ~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 85 MALHKSGELVPLLKEAGALW 104 (104)
T ss_pred HHHHHcCCHHHHHHHhhccC
Confidence 99999999999999999976
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=100.00 E-value=3.2e-32 Score=164.94 Aligned_cols=97 Identities=19% Similarity=0.449 Sum_probs=90.2
Q ss_pred hHHHhhhcCCCEEEEec-----CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEee
Q 034165 2 DRVGRLASQKAVVIFSK-----SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVG 76 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~-----~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ig 76 (102)
+.+++++++++|++|++ |+||||.+|+++|++++++|.++|++.++ ++++.+...++++|+|+|||||++||
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~---~~~~~l~~~sg~~TVPQIFI~G~~IG 82 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP---DIRAELPKYANWPTFPQLWVDGELVG 82 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH---HHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 57889999999999999 49999999999999999999999998654 46778999999999999999999999
Q ss_pred ccHHHHHHHHcCchHHHHHhcCccc
Q 034165 77 SANTVMTLQLNGSLKKLLKDAGAIW 101 (102)
Q Consensus 77 g~~~l~~~~~~g~L~~~L~~~g~~~ 101 (102)
|+|++.+|+++|+|.++|+.+|+++
T Consensus 83 G~ddl~~l~~~G~L~~lL~~~~~~~ 107 (115)
T PRK10824 83 GCDIVIEMYQRGELQQLIKETAAKY 107 (115)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHhhh
Confidence 9999999999999999999999864
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.96 E-value=2.3e-29 Score=149.02 Aligned_cols=90 Identities=24% Similarity=0.502 Sum_probs=82.5
Q ss_pred hHHHhhhcCCCEEEEec-----CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEee
Q 034165 2 DRVGRLASQKAVVIFSK-----SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVG 76 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~-----~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ig 76 (102)
+.+++++++++|++|++ ++||||.+++++|+++|++|..+||+.++ +.++++.+.+++.++|+|||||++||
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~---~~~~~l~~~tg~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDP---EIRQGIKEYSNWPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCH---HHHHHHHHHhCCCCCCEEEECCEEEe
Confidence 57889999999999988 89999999999999999999999998553 45668888889999999999999999
Q ss_pred ccHHHHHHHHcCchHHHH
Q 034165 77 SANTVMTLQLNGSLKKLL 94 (102)
Q Consensus 77 g~~~l~~~~~~g~L~~~L 94 (102)
|++++.+++++|+|.++|
T Consensus 80 G~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 80 GCDIIMEMYQSGELQTLL 97 (97)
T ss_pred ChHHHHHHHHCcChHHhC
Confidence 999999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.95 E-value=1.5e-27 Score=139.47 Aligned_cols=85 Identities=24% Similarity=0.529 Sum_probs=77.7
Q ss_pred HHhhhcCCCEEEEec-----CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeecc
Q 034165 4 VGRLASQKAVVIFSK-----SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSA 78 (102)
Q Consensus 4 l~~~~~~~~v~vy~~-----~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~ 78 (102)
|++++++++|+||++ ++||+|.+++++|++.+++|..+|++.++ ++++++.+.++..++|+||+||++|||+
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~---~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDE---EVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCH---HHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 467899999999998 69999999999999999999999998653 4667888888999999999999999999
Q ss_pred HHHHHHHHcCchH
Q 034165 79 NTVMTLQLNGSLK 91 (102)
Q Consensus 79 ~~l~~~~~~g~L~ 91 (102)
+++.+++++|+|+
T Consensus 78 ~~l~~l~~~g~L~ 90 (90)
T cd03028 78 DIVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHHcCCcC
Confidence 9999999999985
No 7
>PRK10638 glutaredoxin 3; Provisional
Probab=99.94 E-value=5.3e-26 Score=130.98 Aligned_cols=82 Identities=30% Similarity=0.567 Sum_probs=74.0
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcCch
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNGSL 90 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g~L 90 (102)
.+|++|++++||+|++++.+|++++++|..+|++.+++ .++.+.+.++..++|+||+||++|||++++.+++.+|+|
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~---~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l 78 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA---KREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGL 78 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCH
Confidence 47999999999999999999999999999999986653 334677778889999999999999999999999999999
Q ss_pred HHHHH
Q 034165 91 KKLLK 95 (102)
Q Consensus 91 ~~~L~ 95 (102)
.++|+
T Consensus 79 ~~~~~ 83 (83)
T PRK10638 79 DPLLK 83 (83)
T ss_pred HHHhC
Confidence 99874
No 8
>PTZ00062 glutaredoxin; Provisional
Probab=99.94 E-value=5e-26 Score=149.97 Aligned_cols=92 Identities=23% Similarity=0.506 Sum_probs=84.6
Q ss_pred hHHHhhhcCCCEEEEec-----CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEee
Q 034165 2 DRVGRLASQKAVVIFSK-----SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVG 76 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~-----~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ig 76 (102)
+++++++++++|++|++ |+||||++++.+|++.+++|..+||+.++ +.++.+.+.++++++|+|||||++||
T Consensus 104 ~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~---~~~~~l~~~sg~~TvPqVfI~G~~IG 180 (204)
T PTZ00062 104 EKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP---DLREELKVYSNWPTYPQLYVNGELIG 180 (204)
T ss_pred HHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH---HHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 46889999999999998 68999999999999999999999999654 45668888999999999999999999
Q ss_pred ccHHHHHHHHcCchHHHHHh
Q 034165 77 SANTVMTLQLNGSLKKLLKD 96 (102)
Q Consensus 77 g~~~l~~~~~~g~L~~~L~~ 96 (102)
|++++.+|+++|+|.+.|.+
T Consensus 181 G~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 181 GHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred ChHHHHHHHHcCChhhhhhh
Confidence 99999999999999999865
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.93 E-value=6.4e-26 Score=129.29 Aligned_cols=79 Identities=29% Similarity=0.533 Sum_probs=71.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcCchHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNGSLKK 92 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g~L~~ 92 (102)
|++|++++||+|.+++++|+++|++|+.+|++.++. .++.+...++..++|+||+||+++||++++.+++++|+|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~---~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~ 77 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA---LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDP 77 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH---HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhh
Confidence 689999999999999999999999999999997653 33466667778999999999999999999999999999998
Q ss_pred HH
Q 034165 93 LL 94 (102)
Q Consensus 93 ~L 94 (102)
+|
T Consensus 78 ~l 79 (79)
T TIGR02181 78 LL 79 (79)
T ss_pred hC
Confidence 75
No 10
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.93 E-value=3.1e-25 Score=127.15 Aligned_cols=82 Identities=35% Similarity=0.614 Sum_probs=75.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC--ceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcCch
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVS--PAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNGSL 90 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~--~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g~L 90 (102)
|++|+++|||+|.+++++|++++++ |..++++.+++..++++.+.+.++..++|++|+||+++||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999998 99999998777777777888888889999999999999999999999999999
Q ss_pred HHHH
Q 034165 91 KKLL 94 (102)
Q Consensus 91 ~~~L 94 (102)
.++|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 9875
No 11
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-25 Score=129.52 Aligned_cols=94 Identities=29% Similarity=0.537 Sum_probs=87.4
Q ss_pred hHHHhhhcCCCEEEEec-----CCChhHHHHHHHHHhcC-CCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEe
Q 034165 2 DRVGRLASQKAVVIFSK-----SSCCMCHAIKRLFYDQG-VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFV 75 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~-----~~Cp~C~~~~~~l~~~~-~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~i 75 (102)
+.+++.++.++|++|.+ |.|.|+.++..+|...| ++|..+||-.++ ++|+.+++++.|+|+|++||||++|
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~---eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDP---EIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCH---HHHhccHhhcCCCCCceeeECCEEe
Confidence 67899999999999998 68999999999999999 799999998775 4677999999999999999999999
Q ss_pred eccHHHHHHHHcCchHHHHHhcC
Q 034165 76 GSANTVMTLQLNGSLKKLLKDAG 98 (102)
Q Consensus 76 gg~~~l~~~~~~g~L~~~L~~~g 98 (102)
||+|-+.+|+++|+|+++|++++
T Consensus 83 GG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 83 GGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred ccHHHHHHHHHcchHHHHHHhcC
Confidence 99999999999999999998764
No 12
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.92 E-value=8.5e-25 Score=125.00 Aligned_cols=81 Identities=44% Similarity=0.751 Sum_probs=75.7
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcCchH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNGSLK 91 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g~L~ 91 (102)
+|++|++++||+|.+++++|++.+++|..++++.+++..++++.+.+.++..++|++|++|+++||++++.++.++|+|+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 58999999999999999999999999999999988776677778888888999999999999999999999999999997
Q ss_pred H
Q 034165 92 K 92 (102)
Q Consensus 92 ~ 92 (102)
+
T Consensus 81 ~ 81 (82)
T cd03419 81 K 81 (82)
T ss_pred C
Confidence 5
No 13
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.3e-24 Score=123.46 Aligned_cols=79 Identities=33% Similarity=0.578 Sum_probs=70.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcCchH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNGSLK 91 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g~L~ 91 (102)
.|++|++++||||.+++++|+++|++|.+++++.++. .+.++.+.+.+|++++|+||+||+++||.+++.++...|.|+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l~ 80 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKLD 80 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccCC
Confidence 6899999999999999999999999999999997764 445567777778899999999999999999999998888763
No 14
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.91 E-value=5.3e-24 Score=134.05 Aligned_cols=84 Identities=27% Similarity=0.421 Sum_probs=73.3
Q ss_pred CEEEEecC------CChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhC----CCCCccEEEECCeEeeccHHH
Q 034165 12 AVVIFSKS------SCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLG----CNPSVPAVFIGGKFVGSANTV 81 (102)
Q Consensus 12 ~v~vy~~~------~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~----~~~~vP~vfv~g~~igg~~~l 81 (102)
+|++|+++ +||+|.+|+.+|++++++|.++||+.++.. +++|.+.. ++.++|+|||+|++|||++++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~---~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGF---REELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHH---HHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 58999999 999999999999999999999999976543 33455443 358999999999999999999
Q ss_pred HHHHHcCchHHHHHhcC
Q 034165 82 MTLQLNGSLKKLLKDAG 98 (102)
Q Consensus 82 ~~~~~~g~L~~~L~~~g 98 (102)
.+|+++|+|.++|+.+.
T Consensus 78 ~~L~e~G~L~~lL~~~~ 94 (147)
T cd03031 78 LRLNESGELRKLLKGIR 94 (147)
T ss_pred HHHHHcCCHHHHHhhcc
Confidence 99999999999998763
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.91 E-value=1.5e-23 Score=118.11 Aligned_cols=74 Identities=26% Similarity=0.519 Sum_probs=63.8
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCC-CccEEEECCeEeeccHHHHHHHHcC
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNP-SVPAVFIGGKFVGSANTVMTLQLNG 88 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~-~vP~vfv~g~~igg~~~l~~~~~~g 88 (102)
+|++|++++||+|.+++.+|++++++|+.++|+.+++ .++.+.+.++.. ++|+||++|+++||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~---~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPA---LREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHH---HHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 5899999999999999999999999999999996632 333455544555 9999999999999999999999987
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.89 E-value=6.5e-23 Score=115.35 Aligned_cols=71 Identities=23% Similarity=0.408 Sum_probs=63.7
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
+|++|+.++||+|.+|+.+|++++++|+.+|++.++.. ++.+.+.++..++|++|+||++|||++++.+|+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~---~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPER---KAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHH---HHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 68999999999999999999999999999999976643 346777777789999999999999999999875
No 17
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.89 E-value=1.3e-22 Score=115.87 Aligned_cols=76 Identities=30% Similarity=0.579 Sum_probs=65.3
Q ss_pred hhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 6 RLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 6 ~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
|+-++++|++|++++||+|.+++.+|++.|++|+.++++.+.... .+...++..++|+||+||+++||++++.++.
T Consensus 3 ~~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~----~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 3 QARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGR----SLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CcCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHH----HHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 455678999999999999999999999999999999998765443 3445577899999999999999999988753
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.88 E-value=4.3e-22 Score=111.69 Aligned_cols=70 Identities=27% Similarity=0.515 Sum_probs=61.8
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
+|++|++++||+|.+++.+|++++++|..+|++.++.. +.+...++..++|+||+||+++||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~----~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITG----RSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhH----HHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 68999999999999999999999999999999876632 24556678899999999999999999998864
No 19
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.88 E-value=5.4e-22 Score=142.48 Aligned_cols=88 Identities=22% Similarity=0.393 Sum_probs=76.1
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHh-----hCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVR-----LGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~-----~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
.+|+||++++||+|++++++|++.|++|+.+||+.++...++.+.+.+ .+|..++|+|||||++|||++++.+
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~-- 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-- 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--
Confidence 479999999999999999999999999999999977765554444332 3577899999999999999999988
Q ss_pred HcCchHHHHHhcCcc
Q 034165 86 LNGSLKKLLKDAGAI 100 (102)
Q Consensus 86 ~~g~L~~~L~~~g~~ 100 (102)
.+|+|.++|++.|+.
T Consensus 80 ~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 80 RAGEVIARVKGSSLT 94 (410)
T ss_pred HhCCHHHHhcCCccc
Confidence 899999999988763
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.86 E-value=2.1e-21 Score=112.52 Aligned_cols=73 Identities=22% Similarity=0.356 Sum_probs=58.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcC-----CCceEEEeccccchHHHHHHHHhhCCC--CCccEEEECCeEeeccHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQG-----VSPAIYELDEDARGKEMEWALVRLGCN--PSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~-----~~~~~~~id~~~~~~~~~~~l~~~~~~--~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
|++|++++||+|.+|+++|++++ ++|+.+|++.+... ++.+...++. .++|+||+||+++||++++.+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~---~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGIS---KADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHH---HHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHH
Confidence 78999999999999999999985 56777887743321 2234555554 79999999999999999999987
Q ss_pred HcC
Q 034165 86 LNG 88 (102)
Q Consensus 86 ~~g 88 (102)
+++
T Consensus 79 ~~~ 81 (86)
T TIGR02183 79 KEN 81 (86)
T ss_pred Hhc
Confidence 764
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.86 E-value=2.8e-21 Score=111.60 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=60.7
Q ss_pred CEEEEecCCChhHHHHHHHHHh-----cCCCceEEEeccccchHHHHHHHHhhCCC--CCccEEEECCeEeeccHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYD-----QGVSPAIYELDEDARGKEMEWALVRLGCN--PSVPAVFIGGKFVGSANTVMTL 84 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~-----~~~~~~~~~id~~~~~~~~~~~l~~~~~~--~~vP~vfv~g~~igg~~~l~~~ 84 (102)
+|++|++++||+|.+|+++|++ .+++|..+|++.++... +.+....++ .++|+||+||++|||++++.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~---~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISK---ADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHH---HHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 6899999999999999999999 79999999998654322 234444443 7999999999999999999988
Q ss_pred HHc
Q 034165 85 QLN 87 (102)
Q Consensus 85 ~~~ 87 (102)
.++
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 654
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.84 E-value=2e-20 Score=103.51 Aligned_cols=71 Identities=35% Similarity=0.629 Sum_probs=63.3
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
+|++|++++||+|++++.+|++++++|..+|++.++. .++.+.+.++..++|++|+||+++||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~---~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE---LREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 5899999999999999999999999999999987664 3446777777899999999999999999999875
No 23
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.1e-20 Score=123.14 Aligned_cols=92 Identities=23% Similarity=0.496 Sum_probs=85.3
Q ss_pred HHHhhhcCCCEEEEec-----CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeec
Q 034165 3 RVGRLASQKAVVIFSK-----SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGS 77 (102)
Q Consensus 3 ~l~~~~~~~~v~vy~~-----~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg 77 (102)
.+.++++.++|++|.+ |.|.+.+++..+|++++++|..+||..+++ +|+.++.++.|+|+|++||||+++||
T Consensus 131 ~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~Dee---lRqglK~fSdWPTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 131 RLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEE---LRQGLKEFSDWPTFPQLYVKGEFIGG 207 (227)
T ss_pred HHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHH---HHHHhhhhcCCCCccceeECCEeccC
Confidence 6778888999999998 579999999999999999999999997774 67799999999999999999999999
Q ss_pred cHHHHHHHHcCchHHHHHhc
Q 034165 78 ANTVMTLQLNGSLKKLLKDA 97 (102)
Q Consensus 78 ~~~l~~~~~~g~L~~~L~~~ 97 (102)
+|-+.+|+++|+|...|+++
T Consensus 208 lDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 208 LDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred cHHHHHHhhcccHHHHhhcC
Confidence 99999999999999999864
No 24
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.81 E-value=1.1e-19 Score=98.54 Aligned_cols=60 Identities=33% Similarity=0.633 Sum_probs=53.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFV 75 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~i 75 (102)
|++|++++||+|.+++++|++.|++|+.+|++.++. .++.+.+.++..++|+||+||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~---~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEE---AREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHH---HHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchh---HHHHHHHHcCCCccCEEEECCEEC
Confidence 789999999999999999999999999999998763 445677766789999999999986
No 25
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.81 E-value=2.5e-19 Score=104.88 Aligned_cols=80 Identities=14% Similarity=0.234 Sum_probs=67.1
Q ss_pred EEEEecCC------ChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhC----CCCCccEEEECCeEeeccHHHH
Q 034165 13 VVIFSKSS------CCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLG----CNPSVPAVFIGGKFVGSANTVM 82 (102)
Q Consensus 13 v~vy~~~~------Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~----~~~~vP~vfv~g~~igg~~~l~ 82 (102)
|++|+++- =..|..++.+|+.++++|+++||+.++..+ +++.+.+ +.+++|+||+||++|||++++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r---~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENR---QWMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHH---HHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 67777753 347899999999999999999999766543 3555553 3589999999999999999999
Q ss_pred HHHHcCchHHHHH
Q 034165 83 TLQLNGSLKKLLK 95 (102)
Q Consensus 83 ~~~~~g~L~~~L~ 95 (102)
+++++|+|+++|+
T Consensus 79 ~l~e~g~L~~lLk 91 (92)
T cd03030 79 EAKENNTLEEFLK 91 (92)
T ss_pred HHHhCCCHHHHhC
Confidence 9999999999986
No 26
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.76 E-value=3.4e-18 Score=95.84 Aligned_cols=64 Identities=17% Similarity=0.366 Sum_probs=54.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCe-EeeccHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGK-FVGSANT 80 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~-~igg~~~ 80 (102)
|++|++++||+|++++++|+++|++|+.+||+.++...+ .+... +..++|+++++|. .++||+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~---~~~~~-g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAID---YVKAQ-GFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHH---HHHHc-CCcccCEEEECCCcEEeccCH
Confidence 579999999999999999999999999999997664433 55554 6689999999775 9999875
No 27
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.76 E-value=5.9e-18 Score=97.08 Aligned_cols=65 Identities=22% Similarity=0.388 Sum_probs=56.2
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
+|++|++++||+|.+++.+|++.|++|+.+|++.+++..+ .+.. .+..++|+++++|..+.||+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~---~~~~-~g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAE---TLRA-QGFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHH---HHHH-cCCCCcCEEEECCEEEecCCH
Confidence 6899999999999999999999999999999997654333 4444 467899999999999999974
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.62 E-value=3.2e-15 Score=82.87 Aligned_cols=66 Identities=17% Similarity=0.389 Sum_probs=54.2
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
+|++|+.+|||+|++++.+|++.+++|..+|++.++... +.+.+..+..++|+++++|+.+.|++.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~---~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAR---EEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHH---HHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 488999999999999999999999999999998654322 234444566899999999999988754
No 29
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.8e-15 Score=101.47 Aligned_cols=88 Identities=27% Similarity=0.415 Sum_probs=76.3
Q ss_pred CCEEEEecC------CChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhhCCCCCccEEEECCeEeeccHHHHH
Q 034165 11 KAVVIFSKS------SCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMT 83 (102)
Q Consensus 11 ~~v~vy~~~------~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~ 83 (102)
..|+||+++ +.-.|..++.+|+.+++.|.+.||..+... +++++.+.......+.|+|||+|++|||.+++++
T Consensus 131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred ceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhh
Confidence 369999985 788999999999999999999999988765 4466666553445789999999999999999999
Q ss_pred HHHcCchHHHHHhcC
Q 034165 84 LQLNGSLKKLLKDAG 98 (102)
Q Consensus 84 ~~~~g~L~~~L~~~g 98 (102)
|++.|+|.++|+...
T Consensus 211 LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 211 LNEEGKLGKLLKGIP 225 (281)
T ss_pred hhhcchHHHHHhcCC
Confidence 999999999998764
No 30
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.59 E-value=1.4e-14 Score=80.17 Aligned_cols=66 Identities=29% Similarity=0.511 Sum_probs=55.8
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
+|++|+.++||+|.+++.+|++.+++|..++++.+... .+.+.+.++..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~---~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEA---LEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHH---HHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 48999999999999999999999999999999865432 2355555566899999999999999875
No 31
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.57 E-value=2e-14 Score=80.69 Aligned_cols=65 Identities=20% Similarity=0.463 Sum_probs=51.8
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhC-CCCCccEEEE-CCeEeeccH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLG-CNPSVPAVFI-GGKFVGSAN 79 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~-~~~~vP~vfv-~g~~igg~~ 79 (102)
+|++|+++|||+|.+++.+|++.+++|..+|++.++...+ .+...+ +..++|++++ +|..+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~---~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAAD---RVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHH---HHHHHhCCCceeCEEEECCCeEecCCC
Confidence 4889999999999999999999999999999987654332 444444 6789999976 567766544
No 32
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.49 E-value=1e-13 Score=76.21 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=45.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhc-----CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEee
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQ-----GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVG 76 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~-----~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ig 76 (102)
+|++|+++|||+|+.++.+|++. ++++..+|++.+++ +....+..++|+++++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~-------l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD-------LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh-------HHHHcCCcccCEEEECCEEEE
Confidence 58899999999999999999875 46677777775542 233355689999999998875
No 33
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.41 E-value=2.6e-12 Score=75.98 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=58.4
Q ss_pred CEEEEecCCCh------hHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhC---------CCCCccEEEECCeEee
Q 034165 12 AVVIFSKSSCC------MCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLG---------CNPSVPAVFIGGKFVG 76 (102)
Q Consensus 12 ~v~vy~~~~Cp------~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~---------~~~~vP~vfv~g~~ig 76 (102)
.|.||+++.-. .+.++..+|+.++|+|+.+||..++..+. .+.+.. +.+-.|+||++|+++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~---~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQ---WMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHH---HHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHH---HHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 47788876543 45689999999999999999998665443 444332 3345589999999999
Q ss_pred ccHHHHHHHHcCchHHHHH
Q 034165 77 SANTVMTLQLNGSLKKLLK 95 (102)
Q Consensus 77 g~~~l~~~~~~g~L~~~L~ 95 (102)
+++++.++.++++|.+.|+
T Consensus 79 dye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 79 DYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EHHHHHHHHCTT-HHHHHT
T ss_pred eHHHHHHHHhhCHHHHHhC
Confidence 9999999999999999986
No 34
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.33 E-value=1.9e-11 Score=69.07 Aligned_cols=71 Identities=8% Similarity=0.202 Sum_probs=56.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE--CCeEeeccHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI--GGKFVGSANTVMTLQL 86 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--~g~~igg~~~l~~~~~ 86 (102)
+++|+.+.||+|.+++..|+++|++|+.++++..... ...+.+.++..++|++.. +|..+.+.+.|.+..+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~---~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPK---RDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHH---HHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 6799999999999999999999999999999743321 224455667789999987 3678888888877654
No 35
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.31 E-value=2.7e-11 Score=65.75 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=57.2
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTL 84 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~ 84 (102)
++|+.++||+|.+++.+|+.++++|+.++++....... .+...++..++|.+..+|..+++...+.+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999999999999986554332 345566778999999999999998877664
No 36
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.27 E-value=5.9e-11 Score=66.79 Aligned_cols=69 Identities=12% Similarity=0.340 Sum_probs=54.8
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC----CeEeeccHHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG----GKFVGSANTVMTLQL 86 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~----g~~igg~~~l~~~~~ 86 (102)
++++|+.+.||+|.+++.+|+++|++|+.++++... .. .+. .++..++|+++++ |..+.+...+.+..+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~~----~~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-RK----EIK-WSSYKKVPILRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-HH----HHH-HhCCCccCEEEECCCCCccEEEcHHHHHHHHH
Confidence 578999999999999999999999999999886322 11 222 3566899999987 788888888877543
No 37
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.26 E-value=6.6e-11 Score=65.64 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=54.5
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC-CeEeeccHHHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG-GKFVGSANTVMTLQL 86 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~-g~~igg~~~l~~~~~ 86 (102)
.+|+.+.||+|.+++-.|..+|++|+.+.++..... . .+ +..+..++|+++.+ |..++++..+.+..+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~---~~-~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA-T---PI-RMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH-H---HH-HhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 589999999999999999999999999988744322 1 22 33556789999987 899999998887654
No 38
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.25 E-value=3.4e-11 Score=70.08 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=50.7
Q ss_pred hHHHhhhcCCCEEEEecCCChhHHHHHHHHHhc-----CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEee
Q 034165 2 DRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQ-----GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVG 76 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~-----~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ig 76 (102)
++++++-++-.|.+|+.++||+|..++.++++. ++++..+|++..++ ...+ .+..++|.+++||+.+.
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e------~a~~-~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD------EVEE-RGIMSVPAIFLNGELFG 77 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH------HHHH-cCCccCCEEEECCEEEE
Confidence 456665566689999999999999999988654 56777778775542 2223 45689999999998774
No 39
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.15 E-value=6.9e-10 Score=61.57 Aligned_cols=67 Identities=13% Similarity=0.334 Sum_probs=54.4
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC-CeEeeccHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG-GKFVGSANTVMTL 84 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~-g~~igg~~~l~~~ 84 (102)
++|+.++||+|.+++..|+++|++|+.++++...... .+.+.+...++|++..+ |..+.+...+.+.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~----~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPA----EMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCH----HHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 6899999999999999999999999999998654332 34455667899999996 8888877766553
No 40
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.14 E-value=8.4e-10 Score=61.20 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=56.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
+++|+.+.||+|.+++..|+++|++|+.++++...... .+.+.+...++|++..+|..+.+...+.+..+
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPE----DLAELNPYGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCH----HHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 46899999999999999999999999999888554333 33444566789999989988888887777543
No 41
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.11 E-value=9.4e-10 Score=62.18 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=41.7
Q ss_pred CEEEEecCCChhHHHHHHHHHh----cCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCe-Eeecc
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYD----QGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGK-FVGSA 78 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~----~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~-~igg~ 78 (102)
.|++|+++|||+|..++..|++ .+..+....||.+.+.. ...+ .+..++|+++++|+ .+.|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~----~~~~-~~v~~vPt~~~~g~~~~~G~ 68 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ----KAME-YGIMAVPAIVINGDVEFIGA 68 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH----HHHH-cCCccCCEEEECCEEEEecC
Confidence 5889999999999999999864 34334444444333322 2223 45688999999997 33443
No 42
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.09 E-value=6.7e-10 Score=61.50 Aligned_cols=71 Identities=8% Similarity=0.198 Sum_probs=53.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE-CCeEeeccHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI-GGKFVGSANTVMTL 84 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv-~g~~igg~~~l~~~ 84 (102)
+++|+.++||+|.+++.+|++++++|+.+.++..... .....+.+.+...++|++.+ +|..+.+...+.+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGE-QRSPEFLAKNPAGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCc-cCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence 3689999999999999999999999999888753221 01123455666789999997 66777777766654
No 43
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.09 E-value=2.1e-09 Score=62.26 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=57.0
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC-CeEeeccHHHHHH
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG-GKFVGSANTVMTL 84 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~-g~~igg~~~l~~~ 84 (102)
..+++|+.+.||+|.+++.+|+.+|++|+.++++..... +.+.+.+...++|++.++ |..+.+...+.++
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~----~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKP----DWFLEKNPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCc----HHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence 359999999999999999999999999999988854322 234556667889999998 8888888777664
No 44
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.06 E-value=7.9e-10 Score=62.42 Aligned_cols=55 Identities=16% Similarity=0.473 Sum_probs=41.1
Q ss_pred CEEEEecCCChhHHHHHH----HHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEe
Q 034165 12 AVVIFSKSSCCMCHAIKR----LFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFV 75 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~----~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~i 75 (102)
.|.+|+ +|||.|+.+.. ++++.+.++.+++|+..+ + ..+ .+..++|++++||+.+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~---~----a~~-~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMN---E----ILE-AGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH---H----HHH-cCCCcCCEEEECCEEE
Confidence 366776 99999999954 667788888999888322 1 223 4568999999999666
No 45
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=99.06 E-value=2.4e-10 Score=69.00 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=39.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRL 59 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~ 59 (102)
|++|+.++||+|++|+++|+++|++|+++|+..++.. .++.+.+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHc
Confidence 5799999999999999999999999999999877654 4455555543
No 46
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.05 E-value=2e-09 Score=59.87 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=55.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
+++|+.+.||+|.+++.+|+++|++|+.++++..... .....+.+.+....+|.+..+|..+.....+.+..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGE-HLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCC-cCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 4689999999999999999999999999988753321 11224555666678999999998888777766643
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.05 E-value=1.9e-09 Score=66.06 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=49.9
Q ss_pred HHHhhhcCCC--EEEEecCCChhHHHHHHHHHhc----CCCceEEEecccc-----chHHHHHHHHhh---CCCCCccEE
Q 034165 3 RVGRLASQKA--VVIFSKSSCCMCHAIKRLFYDQ----GVSPAIYELDEDA-----RGKEMEWALVRL---GCNPSVPAV 68 (102)
Q Consensus 3 ~l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~~----~~~~~~~~id~~~-----~~~~~~~~l~~~---~~~~~vP~v 68 (102)
.+.+.++..+ ++.|+++|||+|+.+...|++. +.++-++|+|.+. ...++++....+ ++..++|++
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~ 94 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF 94 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE
Confidence 4566666653 7779999999999988888543 4667788888543 112344443443 233469987
Q ss_pred --EECCeEeecc
Q 034165 69 --FIGGKFVGSA 78 (102)
Q Consensus 69 --fv~g~~igg~ 78 (102)
|.+|+.++..
T Consensus 95 v~~k~Gk~v~~~ 106 (122)
T TIGR01295 95 VHITDGKQVSVR 106 (122)
T ss_pred EEEeCCeEEEEE
Confidence 5588777544
No 48
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=99.03 E-value=2.7e-09 Score=66.19 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=37.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVR 58 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~ 58 (102)
|++|+.++||+|++|+++|++.|++|+++|+..++.. .++.+.+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~ 48 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRM 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHH
Confidence 7899999999999999999999999999999876554 334444443
No 49
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=99.02 E-value=1.1e-09 Score=65.30 Aligned_cols=47 Identities=13% Similarity=0.335 Sum_probs=38.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRL 59 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~ 59 (102)
|++|+.++||+|++++++|++.|++|+++|+..++.. .++.+.+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 5799999999999999999999999999999876554 4455555443
No 50
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.01 E-value=2.7e-09 Score=59.86 Aligned_cols=68 Identities=9% Similarity=0.273 Sum_probs=57.1
Q ss_pred EEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 15 IFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 15 vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
+|+.++||+|.+++-+|+.+|++|+.++++...... .+.+.+...++|++..+|..+.+...+.+..+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~----~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRP----EFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSH----HHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchh----HHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence 589999999999999999999999999998554322 44556777899999999999999998877543
No 51
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.96 E-value=8.8e-09 Score=56.91 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=54.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTL 84 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~ 84 (102)
+++|+.+.||+|.+++.+|+..|++|+.++++..... .....+.+.+...++|++..+|..+.+...+.+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGE-TRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcc-cCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 3689999999999999999999999999998753221 1112344556667899999999988887776654
No 52
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.95 E-value=1e-08 Score=62.17 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=38.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRL 59 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~ 59 (102)
|++|+.++||+|++|+++|++.|++|+++|+..++.. .++.+.+...
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 7899999999999999999999999999999766543 4455555543
No 53
>PHA02125 thioredoxin-like protein
Probab=98.94 E-value=5.1e-09 Score=58.85 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=40.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFV 75 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~i 75 (102)
|++|+++|||.|+.++.+|++. .+.+++||.+... .+.+..+..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~~-----~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEGV-----ELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCCH-----HHHHHcCCceeCeEE-CCEEE
Confidence 7899999999999999999864 5667777754432 233334568999987 77644
No 54
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.93 E-value=1.2e-08 Score=63.38 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=38.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVR 58 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~ 58 (102)
|++|+.++|+.|++|+++|++.|++|+++|+..++-. .++.+.+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~ 48 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTK 48 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHH
Confidence 7899999999999999999999999999999865544 335544444
No 55
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.89 E-value=2e-08 Score=62.30 Aligned_cols=46 Identities=17% Similarity=0.337 Sum_probs=38.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVR 58 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~ 58 (102)
|++|+.++|+.|++|+++|++.|++|+++|+..++.. .++.+.+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 7899999999999999999999999999999876544 335444443
No 56
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.87 E-value=2.7e-08 Score=56.78 Aligned_cols=53 Identities=21% Similarity=0.485 Sum_probs=39.0
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC----CCceEEEeccccchHHHHHHHHhhCCCCCccEEEECC
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQG----VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGG 72 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~----~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g 72 (102)
++++|++++|+.|..++.+|++.. +++..+||+.++. +...++ ..+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~-------l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE-------LFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH-------HHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH-------HHHHhc-CCCCEEEEcC
Confidence 489999999999999999998654 3456777774442 233344 5899999999
No 57
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.87 E-value=4.8e-09 Score=63.77 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=46.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhhCCCCCccEEEECCeEeec
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRLGCNPSVPAVFIGGKFVGS 77 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~~~~~~vP~vfv~g~~igg 77 (102)
|++|+.++||+|++|+++|++.|++|.++|+..++.. .++.+.+...+. ..-+.+--+|....+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~-~~~~lin~~~~~~k~ 65 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLED-GIDPLLNTRGQSYRA 65 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcCC-CHHHheeCCCcchhh
Confidence 5799999999999999999999999999999877665 446655555442 223444445555443
No 58
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.85 E-value=2.4e-08 Score=55.85 Aligned_cols=71 Identities=13% Similarity=0.274 Sum_probs=55.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTL 84 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~ 84 (102)
+++|..+.||+|.+++-.|+++|++|+.++++...... ....+.+.+....+|++..+|..+.....+.++
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~-~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEH-NEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCcc-CCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 46899999999999999999999999999887533211 112455667778999999999988888877664
No 59
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.85 E-value=1.1e-08 Score=61.27 Aligned_cols=47 Identities=13% Similarity=0.328 Sum_probs=39.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRL 59 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~ 59 (102)
|++|+.++|+.|++|+++|++.|++|+++|+..++-. .++.+.+...
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHh
Confidence 5799999999999999999999999999999877654 4566666543
No 60
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.81 E-value=9.8e-08 Score=53.12 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=54.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCC-CCCccEEEECCeEeeccHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGC-NPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~-~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
+.+|+.+.||+|.+++-+|+..|++|+.++++......+ +.+... ...+|.+..+|..+.+...+.+..+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~----~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSEL----LLASNPVHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHH----HHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence 468999999999999999999999999988875432222 333444 3689999999988888887776543
No 61
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.81 E-value=3e-08 Score=59.88 Aligned_cols=57 Identities=26% Similarity=0.480 Sum_probs=38.8
Q ss_pred hhcCCCEEEE-ecCCChhHHHHHHHHHhcC-----CCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 7 LASQKAVVIF-SKSSCCMCHAIKRLFYDQG-----VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 7 ~~~~~~v~vy-~~~~Cp~C~~~~~~l~~~~-----~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
+.+..++++| +.+|||+|+.++++|++.. +++..+|++..+ .+....+..++|++++
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~-------~l~~~~~v~~vPt~~i 81 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK-------EKAEKYGVERVPTTIF 81 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH-------HHHHHcCCCcCCEEEE
Confidence 4344456554 7799999999999997654 345556666433 2344456789999988
No 62
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.80 E-value=8.5e-08 Score=53.51 Aligned_cols=73 Identities=8% Similarity=0.040 Sum_probs=57.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
+++|+.+.||+|.+++-+|++.|++|+.+.++..... ...+.+.+......+|.+..+|..+.+...+.+...
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGE-HKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccc-cCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 5789999999999999999999999999888754221 111234555667889999999988888888777644
No 63
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.77 E-value=3.7e-08 Score=67.72 Aligned_cols=68 Identities=18% Similarity=0.453 Sum_probs=56.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
++++|...+||||.+++.+|+-.|++|.+++++ +..+. .+ +++.+..||.+.++|+...+++-|+.+.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVn--pV~r~---eI-k~SsykKVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVN--PVLRQ---EI-KWSSYKKVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEec--chhhh---hc-cccccccccEEEeccceechhHHHHHHH
Confidence 799999999999999999999999999999998 33222 33 4466789999999998888887777654
No 64
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.76 E-value=1.1e-07 Score=52.71 Aligned_cols=57 Identities=9% Similarity=0.121 Sum_probs=47.6
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 19 SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
+.||+|.+++.+|+.+|++|+.++++... .+....+|++..+|..+.++..+.+..+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 38999999999999999999999988432 2444689999999999999988877544
No 65
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.74 E-value=1.1e-07 Score=55.55 Aligned_cols=64 Identities=16% Similarity=0.319 Sum_probs=51.8
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 19 SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
..||||++++-.|.++|++|+.++++.....++ +.+......+|++..+|..+.+.+.+.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~----~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPED----LKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHH----HHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 469999999999999999999999986554433 4455555789999999999999888877544
No 66
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.73 E-value=5.3e-08 Score=58.99 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=38.9
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccc-hHHHHHHHHh
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDAR-GKEMEWALVR 58 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~-~~~~~~~l~~ 58 (102)
.|++|+.++|+.|++|+++|+++|++|+++|+..++- ..++.+.+..
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~ 48 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGD 48 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHH
Confidence 3789999999999999999999999999999976653 4445555554
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.72 E-value=4e-08 Score=65.35 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=38.9
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcC-----CCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCe
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYDQG-----VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGK 73 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~~~-----~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~ 73 (102)
...|++|+++|||+|..++.++++.. +.+..+|++..+ .+....+..++|+++++++
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~-------~~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENP-------DLAEKYGVMSVPKIVINKG 195 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCH-------HHHHHhCCccCCEEEEecC
Confidence 34577799999999999999987653 334445555433 2223345689999998753
No 68
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.72 E-value=1.3e-08 Score=75.29 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=48.5
Q ss_pred HHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeec
Q 034165 3 RVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGS 77 (102)
Q Consensus 3 ~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg 77 (102)
.++++-++..|.+|.+++||||..++..+++..+....+..+. -+..++++...++ +..+||++|+||+.+..
T Consensus 111 ~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~-id~~~~~~~~~~~-~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 111 RIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTM-IDGALFQDEVEAL-GIQGVPAVFLNGEEFHN 183 (515)
T ss_pred HHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEE-EEchhCHHHHHhc-CCcccCEEEECCcEEEe
Confidence 3454445567999999999999999999977765433333322 2222333344444 45799999999977643
No 69
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.71 E-value=9.5e-08 Score=53.82 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=37.4
Q ss_pred CEEEEecCCChhHHHHHHHH----HhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEe
Q 034165 12 AVVIFSKSSCCMCHAIKRLF----YDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFV 75 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l----~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~i 75 (102)
+|.+ .+++||+|..+.+.+ .+.+++++.+++. + .. .+.+ ++..++|.+++||+.+
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~--~~----~~~~-ygv~~vPalvIng~~~ 60 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE-D--FE----EIEK-YGVMSVPALVINGKVV 60 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT-T--HH----HHHH-TT-SSSSEEEETTEEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C--HH----HHHH-cCCCCCCEEEECCEEE
Confidence 4667 467799999887766 4567777777763 2 11 3333 4568999999999754
No 70
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.69 E-value=1.8e-08 Score=74.53 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=47.1
Q ss_pred hHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEee
Q 034165 2 DRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVG 76 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ig 76 (102)
+.++++-++..|.+|.+++||||..++..+++.......+..+.. +..++++...+ ++..+||++|+||+.+.
T Consensus 109 ~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i-d~~~~~~~~~~-~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 109 EQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMI-DGALFQDEVEA-RNIMAVPTVFLNGEEFG 181 (517)
T ss_pred HHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEE-EchhCHhHHHh-cCCcccCEEEECCcEEE
Confidence 345555556679999999999999999998776543222222211 11122323334 45579999999997664
No 71
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.67 E-value=1.7e-07 Score=56.91 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=43.5
Q ss_pred HHHhhhc--CCC--EEEEecCCChhHHHHHHHHHhcCC------CceEEEeccccchHHHHHHHHhhCCCCCccEE--EE
Q 034165 3 RVGRLAS--QKA--VVIFSKSSCCMCHAIKRLFYDQGV------SPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FI 70 (102)
Q Consensus 3 ~l~~~~~--~~~--v~vy~~~~Cp~C~~~~~~l~~~~~------~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv 70 (102)
++.+.+. ..+ |+.|+.+|||.|+.+...|++..- .+-.+|+|.+++ +....+..++|++ |-
T Consensus 4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-------la~~~~V~~iPTf~~fk 76 (114)
T cd02954 4 AVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-------FNKMYELYDPPTVMFFF 76 (114)
T ss_pred HHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-------HHHHcCCCCCCEEEEEE
Confidence 4455554 233 444999999999999999865532 344566665542 3333455789987 55
Q ss_pred CCeEee
Q 034165 71 GGKFVG 76 (102)
Q Consensus 71 ~g~~ig 76 (102)
+|+.++
T Consensus 77 ~G~~v~ 82 (114)
T cd02954 77 RNKHMK 82 (114)
T ss_pred CCEEEE
Confidence 887774
No 72
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.66 E-value=5.8e-07 Score=50.03 Aligned_cols=71 Identities=17% Similarity=0.045 Sum_probs=56.6
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
++++|..+.|+.|.+++-+|++.|++|+.+.++.. ...+.+...+...++|++..+|..+.+...+.+...
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 36788889999999999999999999999988742 122244555666789999999999998888777643
No 73
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.65 E-value=3.7e-07 Score=50.60 Aligned_cols=68 Identities=7% Similarity=0.133 Sum_probs=52.7
Q ss_pred EEEEecCCChhHHHHHHHHHh--cCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE-CCeEeeccHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYD--QGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI-GGKFVGSANTVMTL 84 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~--~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv-~g~~igg~~~l~~~ 84 (102)
+++|+.+.||+|.+++-.|.. +|++|+.+.++......+ +.......++|.+.. +|..+.+...+.+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~----~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDES----LLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChH----HHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 368999999999999999999 889999999885433333 334456678999985 78888887777654
No 74
>PHA02278 thioredoxin-like protein
Probab=98.65 E-value=3.5e-07 Score=54.51 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=44.2
Q ss_pred hHHHhhhcCC-C-EEEEecCCChhHHHHHHHHHhcC------CCceEEEeccccchHHHHHHHHhhCCCCCccEE--EEC
Q 034165 2 DRVGRLASQK-A-VVIFSKSSCCMCHAIKRLFYDQG------VSPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIG 71 (102)
Q Consensus 2 ~~l~~~~~~~-~-v~vy~~~~Cp~C~~~~~~l~~~~------~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~ 71 (102)
+.+++.++.. . ++.|+++||+.|+.+...|++.. +++..+|+|.++... ..+....+..++|++ |-|
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~---~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDR---EKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccccc---HHHHHHCCCccccEEEEEEC
Confidence 3455555543 3 45588899999999999885542 345667777553211 123333445788877 558
Q ss_pred CeEe
Q 034165 72 GKFV 75 (102)
Q Consensus 72 g~~i 75 (102)
|+.+
T Consensus 82 G~~v 85 (103)
T PHA02278 82 GQLV 85 (103)
T ss_pred CEEE
Confidence 8766
No 75
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.65 E-value=2.3e-07 Score=51.19 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=54.1
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTL 84 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~ 84 (102)
++|+.+.||.|.+++.+|+.+|++|+.+.++...... ....+.+.+....+|++..+|..+.....+.+.
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQ-LSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCc-CChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 6888999999999999999999999998887533211 112344556668999999999988887777654
No 76
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.3e-07 Score=51.83 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=46.4
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHH-----------hhCCCCCccEEEEC-CeEeec
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALV-----------RLGCNPSVPAVFIG-GKFVGS 77 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~-----------~~~~~~~vP~vfv~-g~~igg 77 (102)
++|++..||.|..+++.|++.+++|++++|..+ ++.+.+.+. +..|+..+|.+..+ |+.|-|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~S--m~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITES--MANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhh--hhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 789999999999999999999999999999742 222222222 12566789999886 555554
No 77
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.62 E-value=3.9e-07 Score=53.76 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=39.2
Q ss_pred hHHHhhhcCCC--EEEEecCCChhHHHHHHHH-------HhcCCCceE--EEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 2 DRVGRLASQKA--VVIFSKSSCCMCHAIKRLF-------YDQGVSPAI--YELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 2 ~~l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l-------~~~~~~~~~--~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
+.+.++++.++ ++.|+++|||+|+.+...+ +..+-.+.. +|++.++.. .. .+....+..++|++++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~--~~-~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPE--IT-ALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHH--HH-HHHHHcCCCCCCEEEE
Confidence 46777777776 5569999999999887554 122213444 454433221 22 2333345588997744
No 78
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.61 E-value=3.4e-07 Score=53.52 Aligned_cols=58 Identities=19% Similarity=0.355 Sum_probs=36.4
Q ss_pred EEEEecCCChhHHHHHHHHHh----cC--CCceEEEeccccchHHHHHHHHhhCCCCCccEEEE--CCeEeec
Q 034165 13 VVIFSKSSCCMCHAIKRLFYD----QG--VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI--GGKFVGS 77 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~----~~--~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--~g~~igg 77 (102)
+++|+++||+.|+.+...+++ .+ +.+..+|++..++ ...+ .+..++|++++ +|+.+..
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~------l~~~-~~v~~vPt~~i~~~g~~v~~ 82 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE------IAEA-AGIMGTPTVQFFKDKELVKE 82 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH------HHHH-CCCeeccEEEEEECCeEEEE
Confidence 556888999999999988855 22 3344455543331 2223 34578997744 7776643
No 79
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.59 E-value=1.3e-07 Score=52.33 Aligned_cols=67 Identities=12% Similarity=0.183 Sum_probs=48.9
Q ss_pred CChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE-CCeEeeccHHHHHHHH
Q 034165 20 SCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI-GGKFVGSANTVMTLQL 86 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv-~g~~igg~~~l~~~~~ 86 (102)
.||||+++.-+|+.+|++|+...+...+....-...+.+.++..++|++.. +|+.+.++..+.++.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 499999999999999999998777432222111124566677789999998 7999999988887654
No 80
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.58 E-value=2.8e-07 Score=56.19 Aligned_cols=49 Identities=16% Similarity=0.436 Sum_probs=40.2
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhhC
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRLG 60 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~~ 60 (102)
.|++|+.|+|..|++|+++|+++|++|.++|+...+-. .++.+.+...+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 48999999999999999999999999999999876554 44555555443
No 81
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.56 E-value=2.2e-07 Score=69.44 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=46.8
Q ss_pred HHHhhhcCCCEEEEecCCChhHHHHHHHHHh----c-CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEe
Q 034165 3 RVGRLASQKAVVIFSKSSCCMCHAIKRLFYD----Q-GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFV 75 (102)
Q Consensus 3 ~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~----~-~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~i 75 (102)
.|+++-++..|.+|.+++||+|..+...+++ . +++.+.+|+...++ +...++..+||.+++||+.+
T Consensus 470 ~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~-------~~~~~~v~~vP~~~i~~~~~ 540 (555)
T TIGR03143 470 KIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD-------LKDEYGIMSVPAIVVDDQQV 540 (555)
T ss_pred HHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH-------HHHhCCceecCEEEECCEEE
Confidence 3444444557999999999999998887644 3 56777777775542 23234568999999999644
No 82
>PRK10026 arsenate reductase; Provisional
Probab=98.55 E-value=3.5e-07 Score=57.42 Aligned_cols=50 Identities=16% Similarity=0.369 Sum_probs=41.6
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCceEEEecccc-chHHHHHHHHhhC
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDA-RGKEMEWALVRLG 60 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~-~~~~~~~~l~~~~ 60 (102)
..|++|+.++|..|++|+++|+++|++|+++|+-.++ ...+++..+...+
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMG 52 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhCC
Confidence 4689999999999999999999999999999997665 4455666666543
No 83
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.54 E-value=1.2e-06 Score=48.88 Aligned_cols=63 Identities=6% Similarity=0.124 Sum_probs=50.7
Q ss_pred EEEEecC-------CChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 13 VVIFSKS-------SCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 13 v~vy~~~-------~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
+++|+.+ .||+|.+++.+|+..|++|+.++++.. ..+....+|++..+|+.+.++..+.+..
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 4677776 579999999999999999999887632 2344578999999999999888877754
Q ss_pred H
Q 034165 86 L 86 (102)
Q Consensus 86 ~ 86 (102)
+
T Consensus 71 ~ 71 (75)
T cd03080 71 E 71 (75)
T ss_pred H
Confidence 3
No 84
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.53 E-value=1.1e-06 Score=48.58 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=54.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
+++|..+.|+.|.+++-+|++.|++|+.+.++.... .. ..+...+....+|.+..+|..+.+...+.+..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~-~~--~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW-PE--LDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh-hh--hhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 368888999999999999999999999998874321 11 12445566678999999999888888776653
No 85
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.52 E-value=1.3e-06 Score=48.81 Aligned_cols=73 Identities=8% Similarity=0.060 Sum_probs=54.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
+++|+.+.+|+|.++.-.|++.|++|+.+.++..... ...+.+.+......+|++..+|..+....-+.+...
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGE-QLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCC-cCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 3689999999999999999999999999888753321 111134455666789999988888887777766543
No 86
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.52 E-value=5.7e-07 Score=51.27 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=50.3
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC-CeEeeccHHHHHHHH
Q 034165 19 SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG-GKFVGSANTVMTLQL 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~-g~~igg~~~l~~~~~ 86 (102)
++||+|.+++-+|..+|++|+.+.++.... ......+ +......+|++..+ |..+.++..+.++.+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~-~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDI-PPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCc-ccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 679999999999999999999988874322 1212233 44556789999988 899998888877654
No 87
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.51 E-value=1.4e-06 Score=49.08 Aligned_cols=65 Identities=25% Similarity=0.303 Sum_probs=42.1
Q ss_pred HhhhcCC-C-EEEEecCCChhHHHHHHHHHh-----cCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE--CCeEe
Q 034165 5 GRLASQK-A-VVIFSKSSCCMCHAIKRLFYD-----QGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI--GGKFV 75 (102)
Q Consensus 5 ~~~~~~~-~-v~vy~~~~Cp~C~~~~~~l~~-----~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--~g~~i 75 (102)
++.+... + +++|+++||+.|..+...+++ .++.+-.+|++..+. .... .+...+|++++ +|+.+
T Consensus 4 ~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~-~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 4 EELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE------LAEE-YGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred HHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh------HHHh-cCcccccEEEEEECCEEE
Confidence 4444442 3 777999999999999999976 455566666664332 2223 34467998766 77744
Q ss_pred e
Q 034165 76 G 76 (102)
Q Consensus 76 g 76 (102)
+
T Consensus 77 ~ 77 (93)
T cd02947 77 D 77 (93)
T ss_pred E
Confidence 3
No 88
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=98.50 E-value=5.8e-07 Score=55.43 Aligned_cols=47 Identities=9% Similarity=0.198 Sum_probs=37.9
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccc-hHHHHHHHHh
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDAR-GKEMEWALVR 58 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~-~~~~~~~l~~ 58 (102)
.+++|+.++|..|++|+++|++.|++|+++|+-..+- ..+++..+..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGN 49 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHH
Confidence 3789999999999999999999999999999976543 3445555443
No 89
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=98.50 E-value=1.6e-06 Score=57.22 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=57.9
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 9 SQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 9 ~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
+...+++|+.+.||+|.+++-+|+++|++|+.+.++...... .+........+|++..+|..+..+.-|.++.
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQ----DLIDLNPYQSVPTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCH----HHHHhCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 344588999999999999999999999999999998543222 3444555678999999998888888776644
No 90
>PRK10853 putative reductase; Provisional
Probab=98.49 E-value=5.1e-07 Score=55.10 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=39.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEecccc-chHHHHHHHHhh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDA-RGKEMEWALVRL 59 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~-~~~~~~~~l~~~ 59 (102)
|++|+.++|..|++|+++|+++|++|+++|+-..+ ...++.+.+...
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDEL 49 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHc
Confidence 78999999999999999999999999999997655 445566666544
No 91
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.49 E-value=2.7e-06 Score=48.02 Aligned_cols=72 Identities=10% Similarity=0.154 Sum_probs=53.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC---CeEeeccHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG---GKFVGSANTVMTLQL 86 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~---g~~igg~~~l~~~~~ 86 (102)
+++|+.+. |+|.+++-+|+++|++|+.+.++..... ...+.+.+.+....+|.+..+ |..+..+..+.+...
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGE-QKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCc-ccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 67899886 9999999999999999999888743211 111234455666789999987 788888887776543
No 92
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.48 E-value=5.4e-07 Score=54.60 Aligned_cols=47 Identities=21% Similarity=0.448 Sum_probs=38.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRL 59 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~ 59 (102)
|++|+.++|+.|++|+.+|++.|++|+++|+...+-. .++.+.+...
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKL 48 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHc
Confidence 5799999999999999999999999999999766544 4566555554
No 93
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.46 E-value=2.3e-06 Score=51.61 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=42.5
Q ss_pred HHHhhhcCC-C-EEEEecCCChhHHHHHHHHHhc-----CCCceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCe
Q 034165 3 RVGRLASQK-A-VVIFSKSSCCMCHAIKRLFYDQ-----GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGK 73 (102)
Q Consensus 3 ~l~~~~~~~-~-v~vy~~~~Cp~C~~~~~~l~~~-----~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~ 73 (102)
.+.+.++.. . ++.|+.+||+.|+.+...|++. ++.+-.+|++..++ ...++ +..++|++ |-+|+
T Consensus 14 ~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~------l~~~~-~v~~vPt~l~fk~G~ 86 (113)
T cd02989 14 EFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF------LVEKL-NIKVLPTVILFKNGK 86 (113)
T ss_pred HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH------HHHHC-CCccCCEEEEEECCE
Confidence 445555544 3 4558889999999999988653 23344444443331 22333 45788876 55897
Q ss_pred Eeecc
Q 034165 74 FVGSA 78 (102)
Q Consensus 74 ~igg~ 78 (102)
.++..
T Consensus 87 ~v~~~ 91 (113)
T cd02989 87 TVDRI 91 (113)
T ss_pred EEEEE
Confidence 76544
No 94
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.9e-06 Score=58.00 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=61.2
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHc
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLN 87 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~ 87 (102)
..|.+|+.-.|||.++++-.|+.+|++|+++++|....... .++....+..+|++..||+.|..+-.+.++.++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~---ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEW---LLEKNPVHKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHH---HHHhccccccCCEEEECCceehhhHHHHHHHHh
Confidence 56999999999999999999999999999999987554333 344444567899999999999998888876554
No 95
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=98.45 E-value=7.5e-07 Score=53.79 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=38.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccc-hHHHHHHHHhhC
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDAR-GKEMEWALVRLG 60 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~-~~~~~~~l~~~~ 60 (102)
|++|+.++|+.|++|+.+|++.+++|.++|+-+.+- ..++...+...+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 579999999999999999999999999999976553 344555555443
No 96
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=98.45 E-value=1.3e-06 Score=57.79 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=53.6
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEE-ECCeEeeccHHHHHHHHc
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVF-IGGKFVGSANTVMTLQLN 87 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vf-v~g~~igg~~~l~~~~~~ 87 (102)
++|+.+.||+|.+++-+|..+|++|+.++++..... . . .+.++..++|++. .||..+.++..+.++.++
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~---~-~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-T---P-IRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch-h---H-HHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 368889999999999999999999999887643321 1 1 2345557899997 788899999998776554
No 97
>PRK10387 glutaredoxin 2; Provisional
Probab=98.45 E-value=1.5e-06 Score=56.98 Aligned_cols=70 Identities=13% Similarity=0.279 Sum_probs=54.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEE-EECCeEeeccHHHHHHHHc
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAV-FIGGKFVGSANTVMTLQLN 87 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v-fv~g~~igg~~~l~~~~~~ 87 (102)
+++|+.+.||+|.+++-+|+.+|++|+.++++..+... . .+..+..++|++ ..+|..+.++..|.+..++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~----~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT----P-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh----H-HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 46899999999999999999999999999886443211 1 223445689999 5688888998888776554
No 98
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.44 E-value=3.4e-06 Score=51.30 Aligned_cols=30 Identities=23% Similarity=0.625 Sum_probs=22.9
Q ss_pred hHHHhhhcCC-C--EEEEecCCChhHHHHHHHH
Q 034165 2 DRVGRLASQK-A--VVIFSKSSCCMCHAIKRLF 31 (102)
Q Consensus 2 ~~l~~~~~~~-~--v~vy~~~~Cp~C~~~~~~l 31 (102)
+.+.++.+.+ + ++.|+++|||+|+++...+
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHh
Confidence 4567777777 4 5558999999999887654
No 99
>PTZ00051 thioredoxin; Provisional
Probab=98.44 E-value=2.3e-06 Score=49.70 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=43.0
Q ss_pred hHHHhhhcCCC--EEEEecCCChhHHHHHHHHHhcCC---CceEEEeccccchHHHHHHHHhhCCCCCccEEE--ECCeE
Q 034165 2 DRVGRLASQKA--VVIFSKSSCCMCHAIKRLFYDQGV---SPAIYELDEDARGKEMEWALVRLGCNPSVPAVF--IGGKF 74 (102)
Q Consensus 2 ~~l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~~~~---~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vf--v~g~~ 74 (102)
+.++++++.++ ++.|+.+||+.|+.+...|.+..- .+.++.+|.+... ....++ +..++|++. .+|+.
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~----~~~~~~-~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS----EVAEKE-NITSMPTFKVFKNGSV 83 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH----HHHHHC-CCceeeEEEEEeCCeE
Confidence 35566777665 556899999999999988865321 2334444433221 133333 447888764 47766
Q ss_pred eecc
Q 034165 75 VGSA 78 (102)
Q Consensus 75 igg~ 78 (102)
++.+
T Consensus 84 ~~~~ 87 (98)
T PTZ00051 84 VDTL 87 (98)
T ss_pred EEEE
Confidence 6443
No 100
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=7.1e-07 Score=52.35 Aligned_cols=87 Identities=15% Similarity=0.218 Sum_probs=67.8
Q ss_pred CCEEEEecCCChhHH------HHHHHHHhcCCCceEEEeccccchHH-----HHHHHHhhCCCCCccEEEECCeEeeccH
Q 034165 11 KAVVIFSKSSCCMCH------AIKRLFYDQGVSPAIYELDEDARGKE-----MEWALVRLGCNPSVPAVFIGGKFVGSAN 79 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~------~~~~~l~~~~~~~~~~~id~~~~~~~-----~~~~l~~~~~~~~vP~vfv~g~~igg~~ 79 (102)
..|.+|+++..+.-. .+..+|+...+.|+.+||....+.+. ++...+...|.+.-|+||-++++.|+++
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence 357788887665542 67778899999999999986655433 3334444577788999999999999999
Q ss_pred HHHHHHHcCchHHHHHhc
Q 034165 80 TVMTLQLNGSLKKLLKDA 97 (102)
Q Consensus 80 ~l~~~~~~g~L~~~L~~~ 97 (102)
...+..+++.|.+.|+-+
T Consensus 82 ~F~ea~E~ntl~eFL~la 99 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLGLA 99 (108)
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 999999999999999754
No 101
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.9e-07 Score=61.86 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=44.7
Q ss_pred CCCEEE-EecCCChhHHHHHHHHHhc----CCCc--eEEEeccccchHHHHHHHHhhCCCCCccEE--EECCeEeeccH
Q 034165 10 QKAVVI-FSKSSCCMCHAIKRLFYDQ----GVSP--AIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFVGSAN 79 (102)
Q Consensus 10 ~~~v~v-y~~~~Cp~C~~~~~~l~~~----~~~~--~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~igg~~ 79 (102)
..+|+| |+.|||+.|......|++. +-.| -.+|+|.++.-. .. -|..++|+| |++|++|.||.
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vA------aq-fgiqsIPtV~af~dGqpVdgF~ 114 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVA------AQ-FGVQSIPTVYAFKDGQPVDGFQ 114 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHH------HH-hCcCcCCeEEEeeCCcCccccC
Confidence 335555 8889999999999999655 3334 356777666422 23 345899987 78999999884
No 102
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.39 E-value=3.6e-06 Score=49.80 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=41.8
Q ss_pred hHHHhhhcC--CC--EEEEecCCChhHHHHHHHHHhc-----CCCceEEEeccccchHHHHHHHHhhCCCCCccEEE--E
Q 034165 2 DRVGRLASQ--KA--VVIFSKSSCCMCHAIKRLFYDQ-----GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVF--I 70 (102)
Q Consensus 2 ~~l~~~~~~--~~--v~vy~~~~Cp~C~~~~~~l~~~-----~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vf--v 70 (102)
+.+.+.++. .+ ++.|+.+||+.|+.....|++. ++.+-.+|+|.++...+ ...+ .+..++|+++ -
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~---l~~~-~~V~~~Pt~~~~~ 79 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTME---LCRR-EKIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHH---HHHH-cCCCcCCEEEEEe
Confidence 345565653 23 5558999999999998888653 23344455554332122 3333 3457889764 4
Q ss_pred CCeEee
Q 034165 71 GGKFVG 76 (102)
Q Consensus 71 ~g~~ig 76 (102)
+|+.+.
T Consensus 80 ~G~~v~ 85 (103)
T cd02985 80 DGEKIH 85 (103)
T ss_pred CCeEEE
Confidence 787653
No 103
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=5.2e-07 Score=56.86 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCE-EEEecCCChhHHHHHHHHHhcCC------CceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCeEe
Q 034165 11 KAV-VIFSKSSCCMCHAIKRLFYDQGV------SPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFV 75 (102)
Q Consensus 11 ~~v-~vy~~~~Cp~C~~~~~~l~~~~~------~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~i 75 (102)
.+| +.|+.+||..|+-+...|.+..- ++-.+|+|.+.+. ..-++...+|++ |.||+.+
T Consensus 62 ~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~el-------a~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 62 VPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPEL-------AEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred CCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccch-------HhhcceeeeeEEEEEECCEEe
Confidence 354 45999999999999999876543 3445677766643 333556789987 6688766
No 104
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.32 E-value=5.3e-06 Score=46.25 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=53.0
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC-CeEeeccHHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG-GKFVGSANTVMTLQ 85 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~-g~~igg~~~l~~~~ 85 (102)
++|+.+.||+|.+++-+|+.+|++|+.+.++..... ....+.+.....++|++..+ |..+....-+.++.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~--~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKEN--KTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEeccccccc--CCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHH
Confidence 578999999999999999999999999988864321 11234455666889999984 77777766665543
No 105
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.30 E-value=7.8e-06 Score=48.23 Aligned_cols=65 Identities=29% Similarity=0.401 Sum_probs=38.9
Q ss_pred HHHhhhcCCC--EEEEecCCChhHHHHHHHHHhc----C---CCceEEEeccccchHHHHHHHHhhCCCCCccEE--EEC
Q 034165 3 RVGRLASQKA--VVIFSKSSCCMCHAIKRLFYDQ----G---VSPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIG 71 (102)
Q Consensus 3 ~l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~~----~---~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~ 71 (102)
.+.++++..+ ++.|+++|||.|+.+...|.+. + +.+..+|+| .+ + ...++ +..++|++ |-+
T Consensus 9 ~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~---~---~~~~~-~v~~~Pt~~~~~~ 80 (102)
T cd02948 9 EWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI---D---TLKRY-RGKCEPTFLFYKN 80 (102)
T ss_pred HHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH---H---HHHHc-CCCcCcEEEEEEC
Confidence 4455665554 5569999999999988888543 2 223344444 21 1 22333 45788865 457
Q ss_pred CeEe
Q 034165 72 GKFV 75 (102)
Q Consensus 72 g~~i 75 (102)
|+.+
T Consensus 81 g~~~ 84 (102)
T cd02948 81 GELV 84 (102)
T ss_pred CEEE
Confidence 8654
No 106
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.30 E-value=3.8e-06 Score=50.48 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=41.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC---ceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCeEeeccHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVS---PAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFVGSANTVMTL 84 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~---~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~igg~~~l~~~ 84 (102)
++.|+.+||+.|+.+...|++..-+ ..++.+|.+.. + +....+..++|++ |.+|+.++...-...+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~----l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--F----LVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--H----HHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence 4558889999999999988654322 23344443322 2 2232345788976 6689888665544443
No 107
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.30 E-value=4.1e-06 Score=49.02 Aligned_cols=64 Identities=11% Similarity=0.208 Sum_probs=40.6
Q ss_pred HHHhhhcCCCEEEEecCCChhHHHHHHHHHhcC-------CCceEEEeccccchHHHHHHHHhhCCCCCccEEEE--CCe
Q 034165 3 RVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQG-------VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI--GGK 73 (102)
Q Consensus 3 ~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~-------~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--~g~ 73 (102)
.++++++...++.|+++|||.|+.+...+.+.. +.+-.+|++.++. ...+ .+..++|++++ +|+
T Consensus 10 ~f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~------~~~~-~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 10 NWTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG------LSGR-FFVTALPTIYHAKDGV 82 (101)
T ss_pred hHHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh------HHHH-cCCcccCEEEEeCCCC
Confidence 345666666788899999999999998885442 2333444443321 2223 34578998865 564
No 108
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.29 E-value=1e-05 Score=44.76 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=53.0
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTL 84 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~ 84 (102)
.+|+.+.+|+|.+++-.|++.|++|+.++++..... ...+.+.+.+....+|.+..+|..+.....+.++
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~-~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGG-LDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecccccc-ccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence 689999999999999999999999999888743211 1112344556667899999999888877766554
No 109
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.26 E-value=4e-06 Score=43.43 Aligned_cols=56 Identities=25% Similarity=0.462 Sum_probs=38.9
Q ss_pred EEEEecCCChhHHHHHHHHH-----hcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECC
Q 034165 13 VVIFSKSSCCMCHAIKRLFY-----DQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGG 72 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~-----~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g 72 (102)
+++|..++||+|.++...+. ..++.+..++++....... .. ...+..++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEK---EL-KRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhh---HH-HhCCCccccEEEEEe
Confidence 46789999999999999998 4456666666665543221 11 224457899998865
No 110
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.25 E-value=1.9e-05 Score=48.60 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=45.6
Q ss_pred hHHHhhhcCCC-EEE-EecCCChhHHHHHH-HHHh------cCCCceEEEecccc--chHH-HHHHHHhhCCCCCccEEE
Q 034165 2 DRVGRLASQKA-VVI-FSKSSCCMCHAIKR-LFYD------QGVSPAIYELDEDA--RGKE-MEWALVRLGCNPSVPAVF 69 (102)
Q Consensus 2 ~~l~~~~~~~~-v~v-y~~~~Cp~C~~~~~-~l~~------~~~~~~~~~id~~~--~~~~-~~~~l~~~~~~~~vP~vf 69 (102)
+.++++.+.++ |.+ |+.+||++|+.+.. .+.. .+-.|..+.+|.+. +... +.+......+...+|++.
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~v 85 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNV 85 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEE
Confidence 35667777765 444 88899999998865 3422 23356666565433 2221 222233344567899875
Q ss_pred E---CCeEeecc
Q 034165 70 I---GGKFVGSA 78 (102)
Q Consensus 70 v---~g~~igg~ 78 (102)
+ +|+.+.++
T Consensus 86 fl~~~G~~~~~~ 97 (124)
T cd02955 86 FLTPDLKPFFGG 97 (124)
T ss_pred EECCCCCEEeee
Confidence 5 58888444
No 111
>PRK09381 trxA thioredoxin; Provisional
Probab=98.24 E-value=9.7e-06 Score=48.07 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=37.2
Q ss_pred EEEEecCCChhHHHHHHHHHh----cCCCc--eEEEeccccchHHHHHHHHhhCCCCCccEEEE--CCeEeecc
Q 034165 13 VVIFSKSSCCMCHAIKRLFYD----QGVSP--AIYELDEDARGKEMEWALVRLGCNPSVPAVFI--GGKFVGSA 78 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~----~~~~~--~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--~g~~igg~ 78 (102)
++.|+++|||.|..+...|++ ++-.+ -.+|++..+. ...+ .+..++|++++ +|+.++.+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~------~~~~-~~v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG------TAPK-YGIRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh------HHHh-CCCCcCCEEEEEeCCeEEEEe
Confidence 556889999999999888754 33233 4445553332 2223 34588998744 88877543
No 112
>PRK15113 glutathione S-transferase; Provisional
Probab=98.24 E-value=1.2e-05 Score=53.16 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCEEEEecC--CChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 11 KAVVIFSKS--SCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 11 ~~v~vy~~~--~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
..+++|+.+ .||+|.+++-.|+++|++|+.+.++..... ...+.+.+......||++..+|..+-...-|.++.
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~-~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGE-HLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCcc-ccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 457899975 699999999999999999999988753221 11123445566678999999998888877776643
No 113
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.23 E-value=9.5e-06 Score=49.27 Aligned_cols=71 Identities=18% Similarity=0.359 Sum_probs=42.5
Q ss_pred hHHHhhhcCCC--EEEEecCCChhHHHHHHHHHh------cCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE---
Q 034165 2 DRVGRLASQKA--VVIFSKSSCCMCHAIKRLFYD------QGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI--- 70 (102)
Q Consensus 2 ~~l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~------~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--- 70 (102)
++++++.+.++ ++.|+.+||+.|+.+...+.+ .+..|..++++.++... .+.+...+ ..+|++++
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~--~~~~~~~g--~~vPt~~f~~~ 85 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPK--DEEFSPDG--GYIPRILFLDP 85 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCch--hhhcccCC--CccceEEEECC
Confidence 34556665554 444889999999999888855 23456677777654321 11221111 24897744
Q ss_pred CCeEee
Q 034165 71 GGKFVG 76 (102)
Q Consensus 71 ~g~~ig 76 (102)
+|+.++
T Consensus 86 ~Gk~~~ 91 (117)
T cd02959 86 SGDVHP 91 (117)
T ss_pred CCCCch
Confidence 566554
No 114
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.22 E-value=7.9e-06 Score=48.46 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=38.9
Q ss_pred HHhhhcCCC--EEEEecCCChhHHHHHHHHHhcC------------CCceEEEeccccchHHHHHHHHhhCCCCCccEE-
Q 034165 4 VGRLASQKA--VVIFSKSSCCMCHAIKRLFYDQG------------VSPAIYELDEDARGKEMEWALVRLGCNPSVPAV- 68 (102)
Q Consensus 4 l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~~~------------~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v- 68 (102)
+.+.++..+ ++.|+++||++|+.+...+.+.. +.+-.+|++.++ + ...+ .+..++|++
T Consensus 11 f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~---~---l~~~-~~v~~~Ptl~ 83 (108)
T cd02996 11 IDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES---D---IADR-YRINKYPTLK 83 (108)
T ss_pred HHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH---H---HHHh-CCCCcCCEEE
Confidence 455666555 55688999999999998885321 233344555332 1 2333 345889987
Q ss_pred -EECCe
Q 034165 69 -FIGGK 73 (102)
Q Consensus 69 -fv~g~ 73 (102)
|-+|+
T Consensus 84 ~~~~g~ 89 (108)
T cd02996 84 LFRNGM 89 (108)
T ss_pred EEeCCc
Confidence 44665
No 115
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.22 E-value=1.5e-05 Score=44.50 Aligned_cols=71 Identities=10% Similarity=0.193 Sum_probs=51.6
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC-CeEeeccHHHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG-GKFVGSANTVMTLQL 86 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~-g~~igg~~~l~~~~~ 86 (102)
++|+.+.| .|.+++-.|++.|++|+.++++..... ...+.+.+.+....+|++..+ |..+..+..+.+..+
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~ 73 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKT-QKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLA 73 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCc-cCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence 57888876 488899999999999999888754321 111244456667889999887 788888877776543
No 116
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=98.21 E-value=2.3e-05 Score=53.14 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=52.3
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 19 SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
..||+|++++-.|.++|++|+.+.+|...... .+.+......+|++..+|..+.+...|.++.+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~----~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPE----DLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCH----HHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 46999999999999999999999998654333 34455666789999999999999888877655
No 117
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.19 E-value=1.6e-05 Score=47.23 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=36.8
Q ss_pred CEEEEecCCChhHHHHHHHHHh---c----CCCceEEEeccccchH---------------HHHHHHHhhCCCCCccEEE
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYD---Q----GVSPAIYELDEDARGK---------------EMEWALVRLGCNPSVPAVF 69 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~---~----~~~~~~~~id~~~~~~---------------~~~~~l~~~~~~~~vP~vf 69 (102)
.+++|+.+|||+|+++...+.+ . ...+..+-++...... .....+....+...+|+++
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~ 87 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIV 87 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEE
Confidence 4778999999999988777653 1 1134444443322210 1122344445568899986
Q ss_pred E-C--Ce---EeeccHHHHH
Q 034165 70 I-G--GK---FVGSANTVMT 83 (102)
Q Consensus 70 v-~--g~---~igg~~~l~~ 83 (102)
+ + |+ .+.|+-.-.+
T Consensus 88 ~~d~~G~~v~~~~G~~~~~~ 107 (112)
T PF13098_consen 88 FLDKDGKIVYRIPGYLSPEE 107 (112)
T ss_dssp ECTTTSCEEEEEESS--HHH
T ss_pred EEcCCCCEEEEecCCCCHHH
Confidence 6 3 66 4456554333
No 118
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.18 E-value=9.6e-06 Score=49.16 Aligned_cols=54 Identities=11% Similarity=0.245 Sum_probs=35.5
Q ss_pred EEecCCChhHHHHHHHHHhcCCC------ceEEEeccccchHHHHHHHHhhCCCCCccE--EEECCeEe
Q 034165 15 IFSKSSCCMCHAIKRLFYDQGVS------PAIYELDEDARGKEMEWALVRLGCNPSVPA--VFIGGKFV 75 (102)
Q Consensus 15 vy~~~~Cp~C~~~~~~l~~~~~~------~~~~~id~~~~~~~~~~~l~~~~~~~~vP~--vfv~g~~i 75 (102)
-|+.+|||.|+.+..+|.+..-+ +-.+|+|+.++- ....+-...|+ +|-||+++
T Consensus 20 dF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dv-------a~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 20 RFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVY-------TQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHH-------HHhcCceeCcEEEEEECCcEE
Confidence 39999999999999999776533 344566655532 22223344554 46788887
No 119
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.17 E-value=1.2e-05 Score=53.54 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=40.1
Q ss_pred CCCEEEEec---CCChhHHHHHHHHHhcCC-----CceEEEeccccchHHHHHHHHhhCCCCCccEEEE--CCeEe
Q 034165 10 QKAVVIFSK---SSCCMCHAIKRLFYDQGV-----SPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI--GGKFV 75 (102)
Q Consensus 10 ~~~v~vy~~---~~Cp~C~~~~~~l~~~~~-----~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--~g~~i 75 (102)
...+++|+. +|||.|+.+..++++..- ++..+++|.+... .+....+..++|++.+ +|+.+
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~-----~l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK-----EEAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH-----HHHHHcCCCccCEEEEEeCCeee
Confidence 445778888 999999999999976633 3445666643322 2333345688998855 65444
No 120
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.16 E-value=5.6e-06 Score=48.06 Aligned_cols=68 Identities=25% Similarity=0.327 Sum_probs=42.2
Q ss_pred HHhhhcC-CC--EEEEecCCChhHHHHHHHHHhc----CCCceEEEeccccchHHHHHHHHhhCCCCCccEEE--ECCeE
Q 034165 4 VGRLASQ-KA--VVIFSKSSCCMCHAIKRLFYDQ----GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVF--IGGKF 74 (102)
Q Consensus 4 l~~~~~~-~~--v~vy~~~~Cp~C~~~~~~l~~~----~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vf--v~g~~ 74 (102)
.++.+.. ++ ++.|+++||+.|+.++..|.+. +-++.+..+|.... .. ...++ +...+|+++ -+|+.
T Consensus 9 f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~---l~~~~-~v~~~Pt~~~~~~g~~ 83 (103)
T PF00085_consen 9 FEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-KE---LCKKY-GVKSVPTIIFFKNGKE 83 (103)
T ss_dssp HHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-HH---HHHHT-TCSSSSEEEEEETTEE
T ss_pred HHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-ch---hhhcc-CCCCCCEEEEEECCcE
Confidence 4455554 33 6668889999999999888443 32455555554433 11 33343 458899874 47766
Q ss_pred ee
Q 034165 75 VG 76 (102)
Q Consensus 75 ig 76 (102)
+.
T Consensus 84 ~~ 85 (103)
T PF00085_consen 84 VK 85 (103)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 121
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.16 E-value=1.3e-05 Score=46.99 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=39.3
Q ss_pred HHhhhcCCC--EEEEecCCChhHHHHHHHHHhcCC------CceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCe
Q 034165 4 VGRLASQKA--VVIFSKSSCCMCHAIKRLFYDQGV------SPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGK 73 (102)
Q Consensus 4 l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~~~~------~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~ 73 (102)
+++.+...+ ++.|+++||+.|+.+...+.+..- .+-.+|++.++. ...++ +..++|++ |-+|+
T Consensus 11 f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~------~~~~~-~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 11 FDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM------LCRSQ-GVNSYPSLYVFPSGM 83 (101)
T ss_pred HHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH------HHHHc-CCCccCEEEEEcCCC
Confidence 345555444 556889999999999988855432 233455554321 22333 44789988 44675
Q ss_pred Ee
Q 034165 74 FV 75 (102)
Q Consensus 74 ~i 75 (102)
.+
T Consensus 84 ~~ 85 (101)
T cd03003 84 NP 85 (101)
T ss_pred Cc
Confidence 44
No 122
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.15 E-value=1.8e-05 Score=45.75 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=41.5
Q ss_pred HHHhhhcCC--C--EEEEecCCChhHHHHHHHHHhc----CCCceEEEeccccchHHHHHHHHhhCCCCCccEE--EECC
Q 034165 3 RVGRLASQK--A--VVIFSKSSCCMCHAIKRLFYDQ----GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGG 72 (102)
Q Consensus 3 ~l~~~~~~~--~--v~vy~~~~Cp~C~~~~~~l~~~----~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g 72 (102)
.+.+++... + ++.|+.+||+.|+++...|++. ...+..+.+|.+... + ...++ +..++|++ |.+|
T Consensus 4 ~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-~---~~~~~-~i~~~Pt~~~~~~g 78 (97)
T cd02984 4 EFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-E---ISEKF-EITAVPTFVFFRNG 78 (97)
T ss_pred HHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-H---HHHhc-CCccccEEEEEECC
Confidence 344555544 3 5668899999999999988653 234555555544322 1 22333 45789966 5577
Q ss_pred eEe
Q 034165 73 KFV 75 (102)
Q Consensus 73 ~~i 75 (102)
+.+
T Consensus 79 ~~~ 81 (97)
T cd02984 79 TIV 81 (97)
T ss_pred EEE
Confidence 765
No 123
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=98.12 E-value=2.8e-05 Score=43.02 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=52.2
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
++|+.+. +.|.+++-+|+..|++|+.+.++..... .....+........+|.+..+|..+.+...+.+..+
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGE-QAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCc-cCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5777775 6789999999999999999888753211 001133445666789999999999988888877644
No 124
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.11 E-value=1.3e-05 Score=48.41 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=40.1
Q ss_pred CEEEEecCC--ChhHHHHHHHHHhcCCCc------eEEEeccccchHHHHHHHHhhCCCCCccEE--EECCeEeecc
Q 034165 12 AVVIFSKSS--CCMCHAIKRLFYDQGVSP------AIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFVGSA 78 (102)
Q Consensus 12 ~v~vy~~~~--Cp~C~~~~~~l~~~~~~~------~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~igg~ 78 (102)
.|+.|+.+| ||.|..+..+|++..-+| -.+|++..+ .+....+..++|++ |-+|+.++..
T Consensus 30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-------~la~~f~V~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-------ALAARFGVLRTPALLFFRDGRYVGVL 99 (111)
T ss_pred EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-------HHHHHcCCCcCCEEEEEECCEEEEEE
Confidence 467788885 999999999996654332 244555443 23333456889987 5589888654
No 125
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.10 E-value=2.3e-05 Score=49.80 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=37.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcC-------CCceEEEeccccchHHHHHHHHhhCC-----CCCccEE--EECCeEeecc
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQG-------VSPAIYELDEDARGKEMEWALVRLGC-----NPSVPAV--FIGGKFVGSA 78 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~-------~~~~~~~id~~~~~~~~~~~l~~~~~-----~~~vP~v--fv~g~~igg~ 78 (102)
++.|+++|||.|+.+...|++.. +.+-.+|++.+++. ..+++- ..++|++ |.+|+.++..
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~l------a~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~ 124 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNV------AEKFRVSTSPLSKQLPTIILFQGGKEVARR 124 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHH------HHHcCceecCCcCCCCEEEEEECCEEEEEE
Confidence 66799999999999988885432 33444555544421 222221 1237866 6689887544
Q ss_pred H
Q 034165 79 N 79 (102)
Q Consensus 79 ~ 79 (102)
.
T Consensus 125 ~ 125 (152)
T cd02962 125 P 125 (152)
T ss_pred e
Confidence 3
No 126
>PRK10996 thioredoxin 2; Provisional
Probab=98.08 E-value=7.9e-05 Score=46.44 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=41.8
Q ss_pred HHHhhhcCCC--EEEEecCCChhHHHHHHHHHhc----CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE--CCeE
Q 034165 3 RVGRLASQKA--VVIFSKSSCCMCHAIKRLFYDQ----GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI--GGKF 74 (102)
Q Consensus 3 ~l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~~----~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--~g~~ 74 (102)
.++++++..+ ++.|+.+||+.|+.+...|.+. +-.+.++.+|.+... + ...+ .+..++|++++ +|+.
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-~---l~~~-~~V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER-E---LSAR-FRIRSIPTIMIFKNGQV 118 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH-H---HHHh-cCCCccCEEEEEECCEE
Confidence 3455665544 5668999999999988887543 333455555543322 1 2233 34578897744 7876
Q ss_pred ee
Q 034165 75 VG 76 (102)
Q Consensus 75 ig 76 (102)
+.
T Consensus 119 v~ 120 (139)
T PRK10996 119 VD 120 (139)
T ss_pred EE
Confidence 63
No 127
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=98.07 E-value=1.2e-05 Score=48.26 Aligned_cols=45 Identities=16% Similarity=0.472 Sum_probs=32.2
Q ss_pred EecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhhC
Q 034165 16 FSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRLG 60 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~~ 60 (102)
|+.++|..|++|.++|++.|++|+++|+...+-. .++.+.+...+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 7899999999999999999999999999876544 44666666655
No 128
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.07 E-value=3.4e-05 Score=44.49 Aligned_cols=58 Identities=21% Similarity=0.325 Sum_probs=35.3
Q ss_pred EEEEecCCChhHHHHHHHHHhc----CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE--CCeEe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQ----GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI--GGKFV 75 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~----~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--~g~~i 75 (102)
++.|+.+||++|..+...|.+. +-...++.+|.+... + ...++ +..++|++++ +|+.+
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-~---~~~~~-~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-D---IAAKY-GIRSIPTLLLFKNGKEV 81 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH-H---HHHHc-CCCcCCEEEEEeCCcEe
Confidence 5568889999999988877543 322444444433322 1 22333 4578998766 77654
No 129
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.06 E-value=3.3e-05 Score=48.58 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=30.5
Q ss_pred HHHhhhc--CC-C-EEEEecCCChhHHHHHHHHHhcCCC------ceEEEeccccc
Q 034165 3 RVGRLAS--QK-A-VVIFSKSSCCMCHAIKRLFYDQGVS------PAIYELDEDAR 48 (102)
Q Consensus 3 ~l~~~~~--~~-~-v~vy~~~~Cp~C~~~~~~l~~~~~~------~~~~~id~~~~ 48 (102)
++.+.+. .. . |+-|+.+||+.|..+..+|++..-+ +-.+|+|..++
T Consensus 13 e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d 68 (142)
T PLN00410 13 AVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD 68 (142)
T ss_pred HHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH
Confidence 4555553 22 3 3449999999999999999766422 34567776553
No 130
>PLN02473 glutathione S-transferase
Probab=98.05 E-value=3.6e-05 Score=50.65 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=53.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
+++|+.+.+|+|.+++-.|+++|++|+.+.++.......-.+.+ .......+|++..+|..+..+.-+.++.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHL-LRQPFGQVPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHH-hhCCCCCCCeEEECCEEEEehHHHHHHH
Confidence 57899999999999999999999999998877442110001122 3355578999999998888888777644
No 131
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.04 E-value=3.4e-05 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.668 Sum_probs=20.4
Q ss_pred CEEEEecCCChhHHHHHHHHHhc
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQ 34 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~ 34 (102)
.|++|+.++||||+++...+.++
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHH
Confidence 48899999999999999988765
No 132
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.04 E-value=3.3e-05 Score=45.53 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=32.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC---ceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVS---PAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~---~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
++.|+.+||++|+.+...|++..-. ...+.||.+.... .+....+..++|++++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~~~PT~~l 78 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCeecCEEEE
Confidence 5559999999999999888654322 3344555331112 2233344578997743
No 133
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.03 E-value=3.5e-05 Score=45.22 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=32.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcC------CCceEEEeccccchHHHHHHHHhhCCCCCccEEEE--CC
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQG------VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI--GG 72 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~------~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--~g 72 (102)
++.|+++||+.|+.+...+++.. +.+-.+|++..+ + ...+ .+..++|++++ +|
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~---~---~~~~-~~i~~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE---S---LCQQ-ANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH---H---HHHH-cCCCcccEEEEEcCC
Confidence 55688999999999888885442 233344554322 1 2233 34578997744 55
No 134
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.02 E-value=5e-05 Score=47.55 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=40.3
Q ss_pred HHhhhcCCC--EEEEecCCChhHHHHHHHHHhc----C--CCceEEEeccccchHHHHHHHHhhCCCCCccEEEE---CC
Q 034165 4 VGRLASQKA--VVIFSKSSCCMCHAIKRLFYDQ----G--VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI---GG 72 (102)
Q Consensus 4 l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~~----~--~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv---~g 72 (102)
++++++..+ |+.|+.+||+.|..+...|.+. + +.+-.+++|.... .+.+.++ +...+|++++ +|
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~----~~~~~~~-~V~~iPt~v~~~~~G 87 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW----LPEIDRY-RVDGIPHFVFLDREG 87 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc----HHHHHHc-CCCCCCEEEEECCCC
Confidence 445555554 5558889999999988888543 2 3344555553321 1233344 4578997754 47
Q ss_pred eEe
Q 034165 73 KFV 75 (102)
Q Consensus 73 ~~i 75 (102)
+.+
T Consensus 88 ~~v 90 (142)
T cd02950 88 NEE 90 (142)
T ss_pred CEE
Confidence 655
No 135
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.02 E-value=2.7e-05 Score=45.27 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=38.4
Q ss_pred HHhhhcCCC-EEEEecCCChhHHHHHHHHHhc----CC---CceEEEeccccchHHHHHHHHhhCCCCCccEEE--ECCe
Q 034165 4 VGRLASQKA-VVIFSKSSCCMCHAIKRLFYDQ----GV---SPAIYELDEDARGKEMEWALVRLGCNPSVPAVF--IGGK 73 (102)
Q Consensus 4 l~~~~~~~~-v~vy~~~~Cp~C~~~~~~l~~~----~~---~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vf--v~g~ 73 (102)
+.+.+...+ ++.|+++||+.|+.....+.+. +- .+....+|.+.... ...++ +..++|+++ -+|+
T Consensus 10 f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~-~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 10 FDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEF-QVRGYPTLLLFKDGE 84 (102)
T ss_pred HHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhc-CCCcCCEEEEEeCCC
Confidence 445555545 4558899999999888777433 21 34444554333221 22333 457899864 4665
Q ss_pred Ee
Q 034165 74 FV 75 (102)
Q Consensus 74 ~i 75 (102)
.+
T Consensus 85 ~~ 86 (102)
T cd03005 85 KV 86 (102)
T ss_pred ee
Confidence 44
No 136
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.02 E-value=7.1e-05 Score=41.55 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=49.3
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHH
Q 034165 19 SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTL 84 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~ 84 (102)
..||+|.+++-+|+.+|++|+.+.++..... ....+.+.+....+|.+..+|..+.....+.++
T Consensus 8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~--~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPD--TRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEeCCCCcc--ccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 5799999999999999999999888754321 112445566668899999999888887776654
No 137
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.00 E-value=5.4e-05 Score=44.61 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=32.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcC------CCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQG------VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~------~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
++.|.++||++|+.+...+.+.. +.+-.+|++..+.. + ...++ +..++|++++
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~-~---~~~~~-~i~~~Pt~~~ 80 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNK-P---LCGKY-GVQGFPTLKV 80 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccH-H---HHHHc-CCCcCCEEEE
Confidence 66689999999998888775442 22333455532221 1 23333 4578998755
No 138
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.99 E-value=2.9e-05 Score=46.99 Aligned_cols=60 Identities=7% Similarity=-0.017 Sum_probs=36.6
Q ss_pred hcCCC--EEEEecCCChhHHHHHHHHHhcCC------CceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCe
Q 034165 8 ASQKA--VVIFSKSSCCMCHAIKRLFYDQGV------SPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGK 73 (102)
Q Consensus 8 ~~~~~--v~vy~~~~Cp~C~~~~~~l~~~~~------~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~ 73 (102)
++.++ ++.|..+||++|+.+...+++..- .+-.+|++.+++ .+....+..++|++ |.+|+
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~------l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG------KCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH------HHHHhcCCcccCEEEEEECCc
Confidence 34444 556999999999999998866532 233445553332 22222344678876 55765
No 139
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.98 E-value=7.6e-05 Score=43.09 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=36.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCceEEEeccccchHHHHHHHHhhCCCCCccEEE--ECCeEee
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQG----VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVF--IGGKFVG 76 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~----~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vf--v~g~~ig 76 (102)
++.|+.+||+.|+.+...+.+.. -.+....+|.+... .+....+..++|+++ .+|+.+.
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-----QIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-----HHHHHcCCCCCCEEEEEeCCEEee
Confidence 55688899999999988885532 23444455433332 222333457899875 4776653
No 140
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.96 E-value=0.00012 Score=41.85 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=38.3
Q ss_pred HHhhhcCC--CEEEEecCCChhHHHHHHHHHh----c--CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 4 VGRLASQK--AVVIFSKSSCCMCHAIKRLFYD----Q--GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 4 l~~~~~~~--~v~vy~~~~Cp~C~~~~~~l~~----~--~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
+.+++... -+++|+++||++|..+...+.+ . +-.+....++.+... .+.+..+...+|++++
T Consensus 8 ~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 8 FDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN-----DLCSEYGVRGYPTIKL 77 (101)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH-----HHHHhCCCCCCCEEEE
Confidence 45555555 3677999999999998888854 3 233445555433321 2333345588998854
No 141
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.96 E-value=5.3e-05 Score=45.35 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=34.7
Q ss_pred EEEEecCCChhHHHHHHHHHhc-------CCCceEEEeccccchHHHHHHHHhhCCCCCccEEE--ECCeEe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQ-------GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVF--IGGKFV 75 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~-------~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vf--v~g~~i 75 (102)
++.|+++|||.|+.....+.+. ++.+-.+|++..+. ...+ .+..++|+++ .+|+.+
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~------l~~~-~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR------LARK-LGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH------HHHH-cCCccCCEEEEEECCEEE
Confidence 5568999999999887776332 23344455553321 2223 3458899775 578766
No 142
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.95 E-value=2e-05 Score=46.42 Aligned_cols=30 Identities=13% Similarity=0.382 Sum_probs=20.7
Q ss_pred HHhhhcCCC-EEEEecCCChhHHHHHHHHHh
Q 034165 4 VGRLASQKA-VVIFSKSSCCMCHAIKRLFYD 33 (102)
Q Consensus 4 l~~~~~~~~-v~vy~~~~Cp~C~~~~~~l~~ 33 (102)
+.++.+... ++.|+++|||+|+.....|.+
T Consensus 9 ~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~ 39 (104)
T cd03000 9 FKDVRKEDIWLVDFYAPWCGHCKKLEPVWNE 39 (104)
T ss_pred hhhhccCCeEEEEEECCCCHHHHhhChHHHH
Confidence 444444334 555888999999988877744
No 143
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.95 E-value=3.3e-05 Score=44.75 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=35.4
Q ss_pred HHhhhcCCC--EEEEecCCChhHHHHHHHHHhcCC------CceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 4 VGRLASQKA--VVIFSKSSCCMCHAIKRLFYDQGV------SPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 4 l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~~~~------~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
+++.+...+ ++.|+++||+.|+.+...|.+... .+....+|.+... .+....+...+|.+++
T Consensus 6 ~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 6 FDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK-----DLASRFGVSGFPTIKF 75 (102)
T ss_pred HHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH-----HHHHhCCCCcCCEEEE
Confidence 344444443 677999999999988777744321 2334444432221 2223344588998844
No 144
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.95 E-value=1.8e-05 Score=51.35 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=45.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC---ceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCeEeeccHHHHHH---
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVS---PAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFVGSANTVMTL--- 84 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~---~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~igg~~~l~~~--- 84 (102)
|+.|+.+|||.|+.+...|.++.-+ +.++.|+.+.. . ...+ .+..++|++ |.+|+.++.+.-..++
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~---l~~~-f~v~~vPTlllyk~G~~v~~~vG~~~~~g~ 160 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--G---ASDE-FDTDALPALLVYKGGELIGNFVRVTEDLGE 160 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--h---hHHh-CCCCCCCEEEEEECCEEEEEEechHHhcCC
Confidence 4448889999999988888554322 34445543332 1 2233 345789976 5589877544322221
Q ss_pred -HHcCchHHHHHhcC
Q 034165 85 -QLNGSLKKLLKDAG 98 (102)
Q Consensus 85 -~~~g~L~~~L~~~g 98 (102)
.....|+.+|...|
T Consensus 161 ~f~~~~le~~L~~~g 175 (175)
T cd02987 161 DFDAEDLESFLVEYG 175 (175)
T ss_pred CCCHHHHHHHHHhcC
Confidence 12234555555543
No 145
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=97.94 E-value=3.4e-05 Score=50.56 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=53.9
Q ss_pred EEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 15 IFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 15 vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
+|+.+.||+|.+++-+|.++|++|+.+.++...........+...+...++|++..+|..+....-|.....
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~ 73 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLE 73 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHH
Confidence 688889999999999999999999998887421101111234455666789999999998888888766543
No 146
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.93 E-value=7.6e-05 Score=44.43 Aligned_cols=54 Identities=15% Similarity=0.296 Sum_probs=31.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcC-----CCceEEEeccccchHHHHHHHHhhCCCCCccEEE
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQG-----VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVF 69 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~-----~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vf 69 (102)
++.|+++|||+|+.+...|.+.. ..+.+..++.+.+... ...+..+...+|+++
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~---~~~~~~~v~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE---FAKEELQLKSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh---hHHhhcCCCcCCEEE
Confidence 66699999999999988885532 1233434443332111 222334557899874
No 147
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.93 E-value=7.2e-05 Score=45.77 Aligned_cols=66 Identities=8% Similarity=0.146 Sum_probs=39.4
Q ss_pred HHhhhcCCC---EEEEecCCChh--HH--HH--------HHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEE
Q 034165 4 VGRLASQKA---VVIFSKSSCCM--CH--AI--------KRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAV 68 (102)
Q Consensus 4 l~~~~~~~~---v~vy~~~~Cp~--C~--~~--------~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v 68 (102)
+.+.+..++ |+.|..+||+. |+ .. ..+|++.++.+-.+|+|.+++ +....+..++|++
T Consensus 19 F~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~-------La~~~~I~~iPTl 91 (120)
T cd03065 19 YKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK-------VAKKLGLDEEDSI 91 (120)
T ss_pred HHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH-------HHHHcCCccccEE
Confidence 344455443 44466667765 97 33 333445567777788886653 3333455889987
Q ss_pred --EECCeEee
Q 034165 69 --FIGGKFVG 76 (102)
Q Consensus 69 --fv~g~~ig 76 (102)
|.||+.+.
T Consensus 92 ~lfk~G~~v~ 101 (120)
T cd03065 92 YVFKDDEVIE 101 (120)
T ss_pred EEEECCEEEE
Confidence 77998664
No 148
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.92 E-value=2.7e-05 Score=47.60 Aligned_cols=65 Identities=9% Similarity=0.081 Sum_probs=35.5
Q ss_pred EEEEec-------CCChhHHHHHHHHHh----cC--CCceEEEeccccchHHHHHHHHhhCCCC-CccEEEE--CCeEee
Q 034165 13 VVIFSK-------SSCCMCHAIKRLFYD----QG--VSPAIYELDEDARGKEMEWALVRLGCNP-SVPAVFI--GGKFVG 76 (102)
Q Consensus 13 v~vy~~-------~~Cp~C~~~~~~l~~----~~--~~~~~~~id~~~~~~~~~~~l~~~~~~~-~vP~vfv--~g~~ig 76 (102)
++.|+. +|||.|+.+...|++ .+ +.+-.+|++..+........+....+.. ++|++.+ +|..+.
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLV 104 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceec
Confidence 555888 899999988877743 33 3444556654331111011233333335 8998855 444443
Q ss_pred c
Q 034165 77 S 77 (102)
Q Consensus 77 g 77 (102)
|
T Consensus 105 ~ 105 (119)
T cd02952 105 E 105 (119)
T ss_pred c
Confidence 3
No 149
>PLN02378 glutathione S-transferase DHAR1
Probab=97.92 E-value=9.2e-05 Score=49.04 Aligned_cols=64 Identities=11% Similarity=0.214 Sum_probs=50.2
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 19 SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
..||+|.++.-.|++.|++|+.+.++...... .+.+......+|++..+|..+..+.-|.++.+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQ----WFLDISPQGKVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCCH----HHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 45999999999999999999998888654332 34455666789999999988887777766544
No 150
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.91 E-value=8.3e-05 Score=43.28 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=37.5
Q ss_pred HHhhhcCCC--EEEEecCCChhHHHHHHHHHhc----C--CCceEEEeccccc-hHHHHHHHHhhCCCCCccEE--EECC
Q 034165 4 VGRLASQKA--VVIFSKSSCCMCHAIKRLFYDQ----G--VSPAIYELDEDAR-GKEMEWALVRLGCNPSVPAV--FIGG 72 (102)
Q Consensus 4 l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~~----~--~~~~~~~id~~~~-~~~~~~~l~~~~~~~~vP~v--fv~g 72 (102)
++++++..+ ++.|+++|||+|+.+...+.+. . ..+....+|...+ ... ...+ .+..++|++ |-+|
T Consensus 10 ~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~-~~i~~~Pt~~~~~~g 85 (104)
T cd02997 10 FRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA---LKEE-YNVKGFPTFKYFENG 85 (104)
T ss_pred HHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH---HHHh-CCCccccEEEEEeCC
Confidence 444555443 6679999999999887666332 2 2233333333221 122 2233 345788977 4466
Q ss_pred eEe
Q 034165 73 KFV 75 (102)
Q Consensus 73 ~~i 75 (102)
+.+
T Consensus 86 ~~~ 88 (104)
T cd02997 86 KFV 88 (104)
T ss_pred Cee
Confidence 654
No 151
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.90 E-value=6.1e-05 Score=50.37 Aligned_cols=67 Identities=24% Similarity=0.355 Sum_probs=45.7
Q ss_pred HHHhhhcCCCEEEEecCCChhHHHHHHHH----HhcCCCceEEEeccccc-----hHHHHHHHHhhCCCCCccEEEE
Q 034165 3 RVGRLASQKAVVIFSKSSCCMCHAIKRLF----YDQGVSPAIYELDEDAR-----GKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 3 ~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l----~~~~~~~~~~~id~~~~-----~~~~~~~l~~~~~~~~vP~vfv 70 (102)
.|+++.+...+++|.+++||+|+....+| +++|+++..+.+|.... ...-....++++ ...+|.+|+
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~-v~~~Pal~L 189 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG-VKVTPALFL 189 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC-CCcCCEEEE
Confidence 46667777789999999999999888887 56688888888874311 000011223344 478999987
No 152
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.88 E-value=4.4e-05 Score=50.21 Aligned_cols=78 Identities=14% Similarity=0.257 Sum_probs=45.3
Q ss_pred EEE-EecCCChhHHHHHHHHHhcCCC---ceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCeEeeccHHHHHH--
Q 034165 13 VVI-FSKSSCCMCHAIKRLFYDQGVS---PAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFVGSANTVMTL-- 84 (102)
Q Consensus 13 v~v-y~~~~Cp~C~~~~~~l~~~~~~---~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~igg~~~l~~~-- 84 (102)
|+| |+.+||+.|+.+...|.++... ..++.|+.+.. ... .+..++|++ |.||+.++.+.-+..+
T Consensus 105 VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~-~~i~~lPTlliyk~G~~v~~ivG~~~~gg 176 (192)
T cd02988 105 VVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPN-YPDKNLPTILVYRNGDIVKQFIGLLEFGG 176 (192)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------Hhh-CCCCCCCEEEEEECCEEEEEEeCchhhCC
Confidence 444 8889999999999998665433 34555543321 223 345789987 5588766443322222
Q ss_pred --HHcCchHHHHHhcC
Q 034165 85 --QLNGSLKKLLKDAG 98 (102)
Q Consensus 85 --~~~g~L~~~L~~~g 98 (102)
.....|+.+|.+.|
T Consensus 177 ~~~~~~~lE~~L~~~g 192 (192)
T cd02988 177 MNTTMEDLEWLLVQVG 192 (192)
T ss_pred CCCCHHHHHHHHHhcC
Confidence 12235666665544
No 153
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=4.1e-05 Score=45.88 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=37.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCce-----EEEeccccchHHHHHHHHhhCCCCCccEE--EECCeEe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPA-----IYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFV 75 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~-----~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~i 75 (102)
|+-|+++||+.|+.+...+.++..+|. .+|+|+ +++....+. ...+|++ +.+|+-+
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde------~~~~~~~~~-V~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE------LEEVAKEFN-VKAMPTFVFYKGGEEV 87 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc------CHhHHHhcC-ceEeeEEEEEECCEEE
Confidence 444899999999999999987765543 456664 222334443 4788987 4466444
No 154
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.87 E-value=0.00012 Score=50.39 Aligned_cols=64 Identities=13% Similarity=0.268 Sum_probs=49.7
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 19 SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
-.||+|.+++-+|+++|++|+.+.++......+ +...+....+|++..+|..+....-|.++.+
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~----fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEW----FLKISPEGKVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHH----HHhhCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 359999999999999999999988876543333 3344556789999999988887777766543
No 155
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.85 E-value=0.00013 Score=42.39 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=31.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQG----VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~----~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
++.|+++||+.|+.+...|.+.. -.+.+..+|.+... + ...++ +..++|++++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~---~~~~~-~i~~~P~~~~ 78 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ-S---LAQQY-GVRGFPTIKV 78 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH-H---HHHHC-CCCccCEEEE
Confidence 66688899999999988775532 22344444433221 1 23333 4578997743
No 156
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.83 E-value=8e-05 Score=42.19 Aligned_cols=62 Identities=16% Similarity=0.329 Sum_probs=38.4
Q ss_pred HHHhhhcCCC--EEEEecCCChhHHHHHHHHHh-------cCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 3 RVGRLASQKA--VVIFSKSSCCMCHAIKRLFYD-------QGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 3 ~l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~-------~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
++.++.+.++ ++.|+++||++|+.+.+.+-+ ..-.|..+.+|.+...... .+.. ..+|++++
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~~~ 79 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTFFF 79 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEEEE
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEEEE
Confidence 3455555554 555889999999988877621 3445777777765444332 2222 33898865
No 157
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00012 Score=48.17 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=56.3
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCe-EeeccHHHHHHHHcC
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGK-FVGSANTVMTLQLNG 88 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~-~igg~~~l~~~~~~g 88 (102)
++|+.+.+|+|.+++-.+.++|++|+.+.++... ......+...+....||++..+|- .+-.+.-|.++.++.
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~ 75 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAER 75 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhh
Confidence 6788898999999999999999999999998765 112224556666688999999875 677777776655443
No 158
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.79 E-value=0.00012 Score=42.47 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=33.4
Q ss_pred EEEEecCCChhHHHHHHHHHhc----C--CCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQ----G--VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~----~--~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
++.|+++|||.|+.+...+.+. . ..+....+|....... ...++ +..++|++++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~-~i~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD---LAKKY-GVSGFPTLKF 81 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh---hHHhC-CCCCcCEEEE
Confidence 6679999999999888887442 2 2355555554441111 23333 3478998854
No 159
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.77 E-value=0.00012 Score=50.55 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=40.0
Q ss_pred HHhhhcCCCEEEEecCCChhHHHHHHHHH----hcCCCceEEEeccccch-----HHHHHHHHhhCCCCCccEEEE
Q 034165 4 VGRLASQKAVVIFSKSSCCMCHAIKRLFY----DQGVSPAIYELDEDARG-----KEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 4 l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~----~~~~~~~~~~id~~~~~-----~~~~~~l~~~~~~~~vP~vfv 70 (102)
++++....-++.|+.+|||+|+....+|+ ++++.+..+++|..... ..-.....+ .+..++|++|+
T Consensus 161 l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~-~gV~~vPtl~L 235 (271)
T TIGR02740 161 MKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQ-LKIRTVPAVFL 235 (271)
T ss_pred HHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHH-cCCCcCCeEEE
Confidence 34444444577799999999998888874 45666666777653211 000112223 34588998865
No 160
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=97.76 E-value=0.00033 Score=39.42 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=49.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHh--hCCCCCccEEEECCeEeeccHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVR--LGCNPSVPAVFIGGKFVGSANTVMTL 84 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~--~~~~~~vP~vfv~g~~igg~~~l~~~ 84 (102)
.++|..+..+.|.+++-+|++.|++|+.+.++..++ +.+ ... ......+|++.++|..+....-+..+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~---~~~-~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~Y 71 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAED---LEK-LKKDGSLMFQQVPMVEIDGMKLVQTRAILNY 71 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHH---HHh-hccccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence 468888888999999999999999999998874321 111 111 11235899999999888877766654
No 161
>PTZ00062 glutaredoxin; Provisional
Probab=97.74 E-value=0.00013 Score=48.46 Aligned_cols=64 Identities=9% Similarity=0.095 Sum_probs=43.1
Q ss_pred hHHHhhhcC--CC-EEEEecCCChhHHHHHHHHHhcCCC---ceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCe
Q 034165 2 DRVGRLASQ--KA-VVIFSKSSCCMCHAIKRLFYDQGVS---PAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGK 73 (102)
Q Consensus 2 ~~l~~~~~~--~~-v~vy~~~~Cp~C~~~~~~l~~~~~~---~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~ 73 (102)
+++.+.+++ .. |..|+.+|||.|+.+...|.++.-+ +.++.|+.+ .+...+|++ |-||+
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEEEEECCE
Confidence 355667773 33 5556689999999999999766543 456666633 344678965 45788
Q ss_pred Eeecc
Q 034165 74 FVGSA 78 (102)
Q Consensus 74 ~igg~ 78 (102)
.++.+
T Consensus 74 ~i~r~ 78 (204)
T PTZ00062 74 LINSL 78 (204)
T ss_pred EEeee
Confidence 77654
No 162
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.73 E-value=0.00019 Score=46.89 Aligned_cols=35 Identities=31% Similarity=0.597 Sum_probs=26.2
Q ss_pred CEEEEecCCChhHHHHHHHH----HhcCCCceEEEeccc
Q 034165 12 AVVIFSKSSCCMCHAIKRLF----YDQGVSPAIYELDED 46 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l----~~~~~~~~~~~id~~ 46 (102)
++++|+.+|||+|++....| +++++.+--+.+|..
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 48889999999999875544 566776666777644
No 163
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.71 E-value=3.8e-05 Score=47.55 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=32.5
Q ss_pred HHhhhcCCCEEEEecCCChhHHHHHHHHHhc-----CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 4 VGRLASQKAVVIFSKSSCCMCHAIKRLFYDQ-----GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 4 l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~-----~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
++..-+.-.+.+++.+|||+|......|.+. ++++.++-.|.+.+. +.+.+. .+.+++|++++
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el--~~~~lt--~g~~~IP~~I~ 103 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKEL--MDQYLT--NGGRSIPTFIF 103 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHH--TTTTTT---SS--SSEEEE
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhH--HHHHHh--CCCeecCEEEE
Confidence 3444444579999999999999888877433 455555555543321 111222 45589998866
No 164
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.68 E-value=0.0004 Score=45.47 Aligned_cols=23 Identities=17% Similarity=0.596 Sum_probs=20.2
Q ss_pred CCEEEEecCCChhHHHHHHHHHh
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYD 33 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~ 33 (102)
..|++|+.++||||+++...+.+
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhh
Confidence 35889999999999999999974
No 165
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.62 E-value=0.00039 Score=41.84 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=21.7
Q ss_pred HHhhhcCC--C-EEEEecCCChhHHHHHHHHHhc
Q 034165 4 VGRLASQK--A-VVIFSKSSCCMCHAIKRLFYDQ 34 (102)
Q Consensus 4 l~~~~~~~--~-v~vy~~~~Cp~C~~~~~~l~~~ 34 (102)
+++.+... . ++.|+.+|||.|+.....+.+.
T Consensus 11 f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~l 44 (114)
T cd02992 11 FNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKL 44 (114)
T ss_pred HHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHH
Confidence 44454443 2 5558899999999888887553
No 166
>PRK10357 putative glutathione S-transferase; Provisional
Probab=97.61 E-value=0.00043 Score=45.13 Aligned_cols=69 Identities=10% Similarity=0.092 Sum_probs=52.1
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE-CCeEeeccHHHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI-GGKFVGSANTVMTLQL 86 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv-~g~~igg~~~l~~~~~ 86 (102)
++|+.+.||++.+++-+|+++|++|+.++++...... .+...+....+|++.. +|..+-....|.+..+
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~----~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~ 71 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADN----GVAQYNPLGKVPALVTEEGECWFDSPIIAEYIE 71 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCch----hhhhcCCccCCCeEEeCCCCeeecHHHHHHHHH
Confidence 6899999999999999999999999998887533322 2334466678999984 6777777777665433
No 167
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.58 E-value=0.00055 Score=43.54 Aligned_cols=37 Identities=27% Similarity=0.550 Sum_probs=27.6
Q ss_pred CCCEEEEecCCChhHHHHHHHHH----hcCCCceEEEeccc
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFY----DQGVSPAIYELDED 46 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~----~~~~~~~~~~id~~ 46 (102)
...++.|+.+|||+|++....|. ++++.+-.+++|..
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 44588899999999998888874 44666666777643
No 168
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.54 E-value=0.00045 Score=47.39 Aligned_cols=68 Identities=12% Similarity=0.183 Sum_probs=47.0
Q ss_pred hHHHhhhcCCCEEEEecCCChhHHHHHHHH----HhcCCCceEEEeccccch--HH---HHHHHHhhCCCCCccEEEE
Q 034165 2 DRVGRLASQKAVVIFSKSSCCMCHAIKRLF----YDQGVSPAIYELDEDARG--KE---MEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l----~~~~~~~~~~~id~~~~~--~~---~~~~l~~~~~~~~vP~vfv 70 (102)
+.|+++.+...+++|.++.||+|++...++ +++|++...+.+|..... .. -.....++ +...+|.+|+
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~Pal~L 219 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKYFPALYL 219 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCccCceEEE
Confidence 356777778889999999999999888887 567888888888865211 00 00012233 3477999876
No 169
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00021 Score=46.48 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=51.7
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE-CCeEeeccHHHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI-GGKFVGSANTVMTLQL 86 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv-~g~~igg~~~l~~~~~ 86 (102)
.+|..+-||||.+|+-++--++++++..-++.+++..- .+.-|+..||.+-- +|+..+.+=++....+
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp-----~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP-----IRMIGQKQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccCh-----hhhhcccccceEEccccccchhhhHHHHHHH
Confidence 47889999999999999999999998877765554322 23356789998876 5888888877766543
No 170
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.49 E-value=0.00047 Score=47.11 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=46.1
Q ss_pred hHHHhhhcCCCEEEEecCCChhHHHHHHHH----HhcCCCceEEEeccccchH--H---HHHHHHhhCCCCCccEEEE
Q 034165 2 DRVGRLASQKAVVIFSKSSCCMCHAIKRLF----YDQGVSPAIYELDEDARGK--E---MEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l----~~~~~~~~~~~id~~~~~~--~---~~~~l~~~~~~~~vP~vfv 70 (102)
+.|+++.+...+++|..+.||+|++...+| +++|++...+.+|...... . -.....+.+ ...+|.+|+
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~-v~~~PAl~L 212 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLG-VKYFPALML 212 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcC-CcccceEEE
Confidence 356777788899999999999999888887 4568877778877522110 0 000112333 377899887
No 171
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=97.49 E-value=0.0011 Score=43.83 Aligned_cols=72 Identities=14% Similarity=0.252 Sum_probs=50.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE-----CCe--EeeccHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI-----GGK--FVGSANTVMTLQ 85 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv-----~g~--~igg~~~l~~~~ 85 (102)
+++|+.+ +|+|.+++-+|+++|++|+.++++..... .....+.+.+....+|++.. +|. .+-.+.-|.++.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGG-QFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccc-cCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 5688877 69999999999999999999988754321 11123445566678999987 452 466666666644
Q ss_pred H
Q 034165 86 L 86 (102)
Q Consensus 86 ~ 86 (102)
.
T Consensus 80 ~ 80 (215)
T PRK13972 80 A 80 (215)
T ss_pred H
Confidence 3
No 172
>PLN02395 glutathione S-transferase
Probab=97.48 E-value=0.00096 Score=43.83 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=52.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
+++|+.+.| .+.+++-+|+++|++|+.+.++..... .....+.+.+....+|++..+|..+..+..|.++..
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGE-HKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCC-cCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 689987765 479999999999999999888753211 011134445666789999999988888888777554
No 173
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.48 E-value=0.0013 Score=36.69 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 19 SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
+.+|+|-++..+|+-.+++|+.+... ++.. +....+|.+..+|+.|+|++.+.+..+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~~----------sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPWR----------SPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-CCCC----------CCCCccCEEEECCEEecChHHHHHHHH
Confidence 45799999999999999999776433 2211 223469999999999999999888654
No 174
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.47 E-value=0.00079 Score=38.09 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=18.9
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQ 34 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~ 34 (102)
|.+|+.+.||+|..+...+++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 5689999999999998888664
No 175
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=97.41 E-value=0.0011 Score=38.42 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=34.3
Q ss_pred EEEecC-CChhHH------HHHHHHHh-----c---CCCceEEEeccccchHHHHHHHHhh-CCCCCccEEEECCeEeec
Q 034165 14 VIFSKS-SCCMCH------AIKRLFYD-----Q---GVSPAIYELDEDARGKEMEWALVRL-GCNPSVPAVFIGGKFVGS 77 (102)
Q Consensus 14 ~vy~~~-~Cp~C~------~~~~~l~~-----~---~~~~~~~~id~~~~~~~~~~~l~~~-~~~~~vP~vfv~g~~igg 77 (102)
+||++. -|+.|. ..-.||+. + .+.|.++||...++...-++...+. ....-.|.|.++|+.||.
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 478876 488884 44555532 1 2446677777655543334444443 333568999999999964
No 176
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.0013 Score=43.71 Aligned_cols=63 Identities=13% Similarity=0.232 Sum_probs=50.7
Q ss_pred CChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 20 SCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
.||+|+++-..|..++++|.+.-||......+ +...+....+|.+-.||+.+-+.+.+.+..+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~----f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEW----FLDISPGGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHH----HHhhCCCCCCCeEEeCCceeccHHHHHHHHH
Confidence 69999999999999999998877776555444 4455556789999999999999998877533
No 177
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.39 E-value=0.0028 Score=38.57 Aligned_cols=20 Identities=30% Similarity=0.417 Sum_probs=15.5
Q ss_pred EEEEecCCChhHHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFY 32 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~ 32 (102)
++.|+.+|||.|+.....|.
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEECCCChHHHHHhHHHH
Confidence 55578899999997776664
No 178
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.39 E-value=0.0015 Score=40.00 Aligned_cols=20 Identities=30% Similarity=0.417 Sum_probs=15.4
Q ss_pred EEEEecCCChhHHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFY 32 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~ 32 (102)
++.|+.+|||.|+.....|.
T Consensus 21 ll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45588899999998766653
No 179
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=97.38 E-value=0.0004 Score=46.10 Aligned_cols=67 Identities=19% Similarity=0.385 Sum_probs=35.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceE----EEecc-----------ccchHHHHHHHHhhC--CCCCccEEEECCe-E
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAI----YELDE-----------DARGKEMEWALVRLG--CNPSVPAVFIGGK-F 74 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~----~~id~-----------~~~~~~~~~~l~~~~--~~~~vP~vfv~g~-~ 74 (102)
|.+|++.+|+.|..|-++|.++.-+-.+ ..||. .+...+-|+...+.. ....+|+++|||+ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 6899999999999999999765432122 12222 111122333333332 2346899999995 4
Q ss_pred eeccH
Q 034165 75 VGSAN 79 (102)
Q Consensus 75 igg~~ 79 (102)
..|++
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 45555
No 180
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.37 E-value=0.0013 Score=44.36 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=35.8
Q ss_pred EEEEecCCChhHHHHHHHHHhc----CCCceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCeEe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQ----GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFV 75 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~----~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~i 75 (102)
++.|+.+|||+|+.+...+++. +-.+.+..+|..... + ...+ .+..++|++ |.+|+.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~-~---l~~~-~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL-N---LAKR-FAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH-H---HHHH-cCCCcCCEEEEEECCEEE
Confidence 6668899999999999988554 222333344433321 1 2233 345788977 4578766
No 181
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.34 E-value=0.0003 Score=40.78 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=30.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC------CceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGV------SPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~------~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
++.|.++||++|+.+...+.+..- .+....+|.+.. + ...... ..++|++++
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~---~~~~~~-~~~~Pt~~~ 79 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--D---VPSEFV-VDGFPTILF 79 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--h---hhhhcc-CCCCCEEEE
Confidence 566889999999998888754421 233434443222 1 122223 378997754
No 182
>PRK11752 putative S-transferase; Provisional
Probab=97.33 E-value=0.0018 Score=44.43 Aligned_cols=75 Identities=9% Similarity=0.142 Sum_probs=52.5
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhc------CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECC----eEeeccH
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYDQ------GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGG----KFVGSAN 79 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~~------~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g----~~igg~~ 79 (102)
.+++++|+.+ +|+|.+++-.|+++ |++|+.+.|+..... .....+.+......+|++..++ ..+..+.
T Consensus 42 ~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~-~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~ 119 (264)
T PRK11752 42 KHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGD-QFSSGFVEINPNSKIPALLDRSGNPPIRVFESG 119 (264)
T ss_pred CCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCcccc-ccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHH
Confidence 4578999864 99999999999996 888998877643211 1112344556667899998852 4677777
Q ss_pred HHHHHHH
Q 034165 80 TVMTLQL 86 (102)
Q Consensus 80 ~l~~~~~ 86 (102)
-|.++..
T Consensus 120 AIl~YL~ 126 (264)
T PRK11752 120 AILLYLA 126 (264)
T ss_pred HHHHHHH
Confidence 7766544
No 183
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.27 E-value=0.0017 Score=40.98 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=16.8
Q ss_pred EEEEecCCChhHHHHHHHHHh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYD 33 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~ 33 (102)
++.|+++|||.|.+....|.+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 444888999999988888854
No 184
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.22 E-value=0.0023 Score=41.57 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=21.6
Q ss_pred EEEEecCCChhHHHHHHHHHhc---CCCceEEEec
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQ---GVSPAIYELD 44 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~---~~~~~~~~id 44 (102)
++.|+.+|||.|++....|.+. ++.+-.++++
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~ 106 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYK 106 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 5558899999999887777554 4444344443
No 185
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.21 E-value=0.0027 Score=48.11 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=33.6
Q ss_pred EEEEecCCChhHHHHHHH-H------HhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE---CCeE
Q 034165 13 VVIFSKSSCCMCHAIKRL-F------YDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI---GGKF 74 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~-l------~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv---~g~~ 74 (102)
++.|+.+||+.|+..++. + ++.+ ++..+.+|.+.+..+.++.++++ +...+|++++ ||+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~-~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHY-NVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHc-CCCCCCEEEEECCCCCC
Confidence 444889999999987664 2 2222 34444444333222333344444 4578998755 4654
No 186
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=97.20 E-value=0.0072 Score=34.19 Aligned_cols=71 Identities=10% Similarity=-0.044 Sum_probs=46.9
Q ss_pred EEecCCChhHHHHHHHHHhcCCCceEEEeccccch----HHHHHHHH-hhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 15 IFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG----KEMEWALV-RLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 15 vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~----~~~~~~l~-~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
+|....-+.|.+++-+|++.|++|+.+.++..... .+...... ......++|++..+|..+....-+....
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence 44445557889999999999999999888754311 12111111 1114468999999998888777666654
No 187
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.19 E-value=0.0017 Score=37.23 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=31.9
Q ss_pred EEEEecCCChhHHHHHHHHHh----cC--CCceEEEeccccchHHHHHHHHhh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYD----QG--VSPAIYELDEDARGKEMEWALVRL 59 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~----~~--~~~~~~~id~~~~~~~~~~~l~~~ 59 (102)
++.|+++|||.|.+....|++ ++ -.+.++-|..+.+..++++.+...
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 566899999999987777733 34 566777776666666677676665
No 188
>PTZ00102 disulphide isomerase; Provisional
Probab=97.16 E-value=0.0019 Score=47.28 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=38.2
Q ss_pred HHhhhcCCC--EEEEecCCChhHHHHHHHHHh-------cCCCceEEEeccccchHHHHHHHHhhCCCCCccEE--EECC
Q 034165 4 VGRLASQKA--VVIFSKSSCCMCHAIKRLFYD-------QGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGG 72 (102)
Q Consensus 4 l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~-------~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g 72 (102)
+.++++.++ ++.|+.+||++|+++...+.+ .+.++....+|..... + ...++ +..++|++ |-+|
T Consensus 42 f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-~---l~~~~-~i~~~Pt~~~~~~g 116 (477)
T PTZ00102 42 FDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-E---LAQEF-GVRGYPTIKFFNKG 116 (477)
T ss_pred HHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-H---HHHhc-CCCcccEEEEEECC
Confidence 445555554 666889999999988766533 2223444455433332 1 22333 45789977 3456
Q ss_pred eEe
Q 034165 73 KFV 75 (102)
Q Consensus 73 ~~i 75 (102)
+.+
T Consensus 117 ~~~ 119 (477)
T PTZ00102 117 NPV 119 (477)
T ss_pred ceE
Confidence 543
No 189
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.0015 Score=38.10 Aligned_cols=70 Identities=7% Similarity=0.140 Sum_probs=42.7
Q ss_pred hcCCCEEEEecCC-ChhHH------HHHHHHHhc------CCC--ceEEEeccccchHHHHHHHHhh-CCCCCccEEEEC
Q 034165 8 ASQKAVVIFSKSS-CCMCH------AIKRLFYDQ------GVS--PAIYELDEDARGKEMEWALVRL-GCNPSVPAVFIG 71 (102)
Q Consensus 8 ~~~~~v~vy~~~~-Cp~C~------~~~~~l~~~------~~~--~~~~~id~~~~~~~~~~~l~~~-~~~~~vP~vfv~ 71 (102)
++..++++|++.. |..|. ..-.||+.. +.+ |.++||...+.....++...+. ....-.|.|.++
T Consensus 2 ~~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivve 81 (106)
T COG4837 2 VNEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVE 81 (106)
T ss_pred CceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEc
Confidence 4456789999864 77774 455566321 334 4566775444444444444443 333468999999
Q ss_pred CeEeec
Q 034165 72 GKFVGS 77 (102)
Q Consensus 72 g~~igg 77 (102)
|+.|+.
T Consensus 82 deiVae 87 (106)
T COG4837 82 DEIVAE 87 (106)
T ss_pred ceEeec
Confidence 999964
No 190
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.11 E-value=0.0033 Score=37.98 Aligned_cols=22 Identities=14% Similarity=0.251 Sum_probs=17.6
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQ 34 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~ 34 (102)
++.|..+|||.|......|.++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHH
Confidence 5668899999999887777544
No 191
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.09 E-value=0.0025 Score=46.12 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=39.8
Q ss_pred HHHhhhcCCC--EEEEecCCChhHHHHHHHHHh-------cCCCceEEEeccccchHHHHHHHHhhCCCCCccEE--EEC
Q 034165 3 RVGRLASQKA--VVIFSKSSCCMCHAIKRLFYD-------QGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIG 71 (102)
Q Consensus 3 ~l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l~~-------~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~ 71 (102)
.+.++++.++ ++.|+++||++|+.+...+.+ .+-.+....+|.+... .+....+..++|++ |.+
T Consensus 10 ~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~ 84 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK-----DLAQKYGVSGYPTLKIFRN 84 (462)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH-----HHHHhCCCccccEEEEEeC
Confidence 3455666665 566899999999988776643 2322444555543332 22223345789987 446
Q ss_pred CeE
Q 034165 72 GKF 74 (102)
Q Consensus 72 g~~ 74 (102)
|+.
T Consensus 85 g~~ 87 (462)
T TIGR01130 85 GED 87 (462)
T ss_pred Ccc
Confidence 665
No 192
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.09 E-value=0.0034 Score=40.31 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=17.1
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQ 34 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~ 34 (102)
++.|+.+|||.|++....+.+.
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHH
Confidence 5558889999999887777544
No 193
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.0012 Score=40.28 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=29.5
Q ss_pred CCChhHHHHHHHHHh----cCCC--ceEEEeccccchHHHHHHHHhhCCC-CCccEEEECC
Q 034165 19 SSCCMCHAIKRLFYD----QGVS--PAIYELDEDARGKEMEWALVRLGCN-PSVPAVFIGG 72 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~----~~~~--~~~~~id~~~~~~~~~~~l~~~~~~-~~vP~vfv~g 72 (102)
||||+|.+|...+.+ ...+ +-.+++...+..+.-...++.-.+. ..+|++.-=+
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK 103 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence 699999999988743 3333 4455666555443211122222222 4578876544
No 194
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=97.02 E-value=0.011 Score=32.88 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=46.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCC-CCccEEEEC-CeEeeccHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCN-PSVPAVFIG-GKFVGSANTVMTL 84 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~-~~vP~vfv~-g~~igg~~~l~~~ 84 (102)
+.+|..+. .|..++-+|+..|++|+.+.++....... .+.+...... ..+|.+..+ |..+.....+...
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~-~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~Y 73 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHK-SPEFLAINPMFGKVPALEDGDGFVLTESNAILRY 73 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGG-SHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEeccccccc-chhhhhcccccceeeEEEECCCCEEEcHHHHHHH
Confidence 45566666 88999999999999999988875332110 0133444444 689999999 9888877766554
No 195
>PLN02309 5'-adenylylsulfate reductase
Probab=97.02 E-value=0.0041 Score=46.01 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=31.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC-----CceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGV-----SPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~-----~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
++.|..+|||+|+.+...|.+... .+.+..+|.+..... ...+..+..++|++++
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~I~~~PTil~ 428 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCCCceeeEEEE
Confidence 667999999999999888855422 233344443311111 2222234578898744
No 196
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.99 E-value=0.0049 Score=38.60 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=54.9
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeecc---HHHHHHH
Q 034165 9 SQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSA---NTVMTLQ 85 (102)
Q Consensus 9 ~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~---~~l~~~~ 85 (102)
...++++|-+|+|.=|..-.+.|+..|+++..+..+... .+++.+.--....+.=+..|||.+|-|- +.+.++.
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~---alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll 100 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFL---ALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLL 100 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHH---HHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHH
Confidence 345799999999999999999999999988887666333 2222222112234667999999999875 4556665
Q ss_pred HcCc
Q 034165 86 LNGS 89 (102)
Q Consensus 86 ~~g~ 89 (102)
+++.
T Consensus 101 ~~~p 104 (149)
T COG3019 101 AEKP 104 (149)
T ss_pred hCCC
Confidence 5543
No 197
>PRK10542 glutathionine S-transferase; Provisional
Probab=96.98 E-value=0.0041 Score=40.35 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=48.3
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE-CCeEeeccHHHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI-GGKFVGSANTVMTLQL 86 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv-~g~~igg~~~l~~~~~ 86 (102)
++|+.++ +.+.+++-+|+++|++|+.+.++.........+.+.+......+|++.+ +|..+..+..|.++.+
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~ 74 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLA 74 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHH
Confidence 4666553 3467788889999999999888753221001123445566678999986 6778888877776543
No 198
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=96.96 E-value=0.0053 Score=37.74 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCCceEEEeccccch----HHHHHHHHhhCCCCCccEEEECCeEe--eccHHHHHH
Q 034165 26 AIKRLFYDQGVSPAIYELDEDARG----KEMEWALVRLGCNPSVPAVFIGGKFV--GSANTVMTL 84 (102)
Q Consensus 26 ~~~~~l~~~~~~~~~~~id~~~~~----~~~~~~l~~~~~~~~vP~vfv~g~~i--gg~~~l~~~ 84 (102)
.+..+|++.|+++..+++..+|.. +.+.+.|...+ ...+|.++|||+.+ |.+-+..++
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G-~e~LPitlVdGeiv~~G~YPt~eEl 94 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEG-AEALPITLVDGEIVKTGRYPTNEEL 94 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH--GGG-SEEEETTEEEEESS---HHHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcC-cccCCEEEECCEEEEecCCCCHHHH
Confidence 566678899999999999988875 33565666555 48899999999887 666654443
No 199
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.95 E-value=0.0019 Score=47.76 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=34.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcC-------CCceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQG-------VSPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGK 73 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~-------~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~ 73 (102)
++.|+.+|||+|+.+...|++.. +.+-.+|+|.+.. + ......+..++|++ |.+|.
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~---~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--E---FAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--H---HHHHHcCCCccceEEEEECCC
Confidence 55699999999999998885442 3344566664432 1 12222344678877 44653
No 200
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0038 Score=40.86 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=52.1
Q ss_pred CEEEEe--cCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcC
Q 034165 12 AVVIFS--KSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNG 88 (102)
Q Consensus 12 ~v~vy~--~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g 88 (102)
+-.+|+ ++.|. .+||-.|.=++++|++..|+--....+.-..+++.....+||++.+||..+-.+--++++.++-
T Consensus 5 KpiLYSYWrSSCs--wRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 5 KPILYSYWRSSCS--WRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred cchhhhhhcccch--HHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhc
Confidence 334444 45554 4677777777888888777655544444446777777789999999999998877777765543
No 201
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.95 E-value=0.0077 Score=35.52 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=30.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCceEEEeccccchHHHHHHHHhhCCCCCccEEE
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQG----VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVF 69 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~----~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vf 69 (102)
++.|..+|||.|+.....+++.. -.+..+-+. +.+..+..+.+++.. ...+|.++
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~-~~~~p~~~ 83 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHG-LEAFPYVL 83 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhC-CCCCcEEe
Confidence 55688899999998877775432 223444332 233334444554443 23467654
No 202
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=96.94 E-value=0.012 Score=33.05 Aligned_cols=58 Identities=10% Similarity=0.169 Sum_probs=43.5
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 19 SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
+..+.|.++..+|+..|++|+.++....+ . .+....+|.+.+||+.|+++.-+..+..
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~-------~---~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE-------F---MSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc-------c---cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 56889999999999999999988542111 0 1222569999999999999888776543
No 203
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.89 E-value=0.0096 Score=38.87 Aligned_cols=30 Identities=13% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEecCCChhHHHHHHHH----HhcCCCceEEE
Q 034165 13 VVIFSKSSCCMCHAIKRLF----YDQGVSPAIYE 42 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l----~~~~~~~~~~~ 42 (102)
++.|+.+|||.|++....+ ++.+.++..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 5568899999998766555 33455444444
No 204
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.88 E-value=0.009 Score=35.67 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=38.8
Q ss_pred hHHHhhhcCCC--EEEEecCCChhHHHHHH-HHHhc------CCCceEEEecccc-chHHHHHHHHhhCCCCCccEEEE-
Q 034165 2 DRVGRLASQKA--VVIFSKSSCCMCHAIKR-LFYDQ------GVSPAIYELDEDA-RGKEMEWALVRLGCNPSVPAVFI- 70 (102)
Q Consensus 2 ~~l~~~~~~~~--v~vy~~~~Cp~C~~~~~-~l~~~------~~~~~~~~id~~~-~~~~~~~~l~~~~~~~~vP~vfv- 70 (102)
++++++.+.++ ++.+.++||++|+.+.+ +|... +-.|-.+.+|... ++.+ +....+...+|.+.+
T Consensus 8 ~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~----~~~~~~~~~~P~~~~i 83 (114)
T cd02958 8 DAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQR----FLQSYKVDKYPHIAII 83 (114)
T ss_pred HHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHH----HHHHhCccCCCeEEEE
Confidence 34555555555 44477799999998754 55332 2235555454432 3332 333334578998744
Q ss_pred ---CCeEe
Q 034165 71 ---GGKFV 75 (102)
Q Consensus 71 ---~g~~i 75 (102)
+|+.+
T Consensus 84 ~~~~g~~l 91 (114)
T cd02958 84 DPRTGEVL 91 (114)
T ss_pred eCccCcEe
Confidence 45544
No 205
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.82 E-value=0.0026 Score=43.75 Aligned_cols=52 Identities=12% Similarity=0.282 Sum_probs=42.9
Q ss_pred ChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHH
Q 034165 21 CCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMT 83 (102)
Q Consensus 21 Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~ 83 (102)
.|||-++..+|...+++|+.++-... ..+...++|-|..||++|.+.+-+..
T Consensus 61 SPfClKvEt~lR~~~IpYE~~~~~~~-----------~rSr~G~lPFIELNGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 61 SPFCLKVETFLRAYDIPYEIVDCSLK-----------RRSRNGTLPFIELNGEHIADSDLIED 112 (281)
T ss_pred ChHHHHHHHHHHHhCCCceeccccce-----------eeccCCCcceEEeCCeeccccHHHHH
Confidence 67999999999999999999876642 11344689999999999999987654
No 206
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.78 E-value=0.0045 Score=35.74 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=16.7
Q ss_pred CEEEEecCCChhHHHHHHHHHh
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYD 33 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~ 33 (102)
-+++|..+|||.|......|.+
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred EEEEeecccChhHHHHhHHHHH
Confidence 3667888999999977666643
No 207
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.78 E-value=0.0036 Score=36.28 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=33.3
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCC----CceEEEeccccchHHHHHHHHhhCCCC--CccEEEE
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGV----SPAIYELDEDARGKEMEWALVRLGCNP--SVPAVFI 70 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~----~~~~~~id~~~~~~~~~~~l~~~~~~~--~vP~vfv 70 (102)
-+++|..+||+.|..++..|++..- ++.++-+|.+... +.+..++. . ++|++.+
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~----~~~~~~~i-~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG----RHLEYFGL-KEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH----HHHHHcCC-ChhhCCEEEE
Confidence 4667888999999999999866432 2344444433321 13333333 4 8998865
No 208
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0063 Score=45.32 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=44.5
Q ss_pred HHHhhhcCCCE--EEEecCCChhHH-------HHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEE--EEC
Q 034165 3 RVGRLASQKAV--VIFSKSSCCMCH-------AIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIG 71 (102)
Q Consensus 3 ~l~~~~~~~~v--~vy~~~~Cp~C~-------~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~ 71 (102)
.+.+.|..+.. +-|..|||.+|+ ++...|++.+-+...-.||-..+ +....++ +.+.+|++ |.|
T Consensus 34 nf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y-~v~gyPTlkiFrn 108 (493)
T KOG0190|consen 34 NFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKY-EVRGYPTLKIFRN 108 (493)
T ss_pred cHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhh-cCCCCCeEEEEec
Confidence 45677777764 348889999997 56666777666666666665443 2233344 34778876 778
Q ss_pred CeE
Q 034165 72 GKF 74 (102)
Q Consensus 72 g~~ 74 (102)
|+.
T Consensus 109 G~~ 111 (493)
T KOG0190|consen 109 GRS 111 (493)
T ss_pred CCc
Confidence 875
No 209
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.75 E-value=0.011 Score=37.35 Aligned_cols=19 Identities=16% Similarity=0.252 Sum_probs=14.9
Q ss_pred EEEEecCCChhHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLF 31 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l 31 (102)
++.|+.+|||.|+.....|
T Consensus 65 ~l~f~a~~C~~C~~~~~~l 83 (173)
T PRK03147 65 FLNFWGTWCKPCEKEMPYM 83 (173)
T ss_pred EEEEECCcCHHHHHHHHHH
Confidence 5668889999998765555
No 210
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.67 E-value=0.0031 Score=39.14 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=21.2
Q ss_pred hHHHhhhcCCC--EEEEecCCChhHHHHHHHH
Q 034165 2 DRVGRLASQKA--VVIFSKSSCCMCHAIKRLF 31 (102)
Q Consensus 2 ~~l~~~~~~~~--v~vy~~~~Cp~C~~~~~~l 31 (102)
+.+..+.+.++ +++|+++|||+|+++.+..
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 34556666655 4448889999999888764
No 211
>PTZ00057 glutathione s-transferase; Provisional
Probab=96.65 E-value=0.027 Score=36.91 Aligned_cols=73 Identities=11% Similarity=0.123 Sum_probs=52.0
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHH-hhCCCCCccEEEECCeEeeccHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALV-RLGCNPSVPAVFIGGKFVGSANTVMTL 84 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~-~~~~~~~vP~vfv~g~~igg~~~l~~~ 84 (102)
++++|+.+..+.+..++-+|+..|++|+.+.++..... .+..+... ..+....+|++.+||..+....-+...
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 47889888889999999999999999999877532210 01111111 235556899999999888877776664
No 212
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.63 E-value=0.0047 Score=39.43 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=33.0
Q ss_pred hhcCCCEEE-EecCCChhHHHHHHH----HH---hcCCCceEEEeccccchHHHHHHHHh
Q 034165 7 LASQKAVVI-FSKSSCCMCHAIKRL----FY---DQGVSPAIYELDEDARGKEMEWALVR 58 (102)
Q Consensus 7 ~~~~~~v~v-y~~~~Cp~C~~~~~~----l~---~~~~~~~~~~id~~~~~~~~~~~l~~ 58 (102)
.++..-|.+ |+..|||.|+..-.. ++ +.+-+++++-|+.+.+..++.+.+..
T Consensus 30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~ 89 (157)
T KOG2501|consen 30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLE 89 (157)
T ss_pred hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHh
Confidence 333433444 666899999854444 33 33456999999887777666556554
No 213
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.63 E-value=0.0084 Score=35.84 Aligned_cols=32 Identities=13% Similarity=0.246 Sum_probs=21.7
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEe
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYEL 43 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~i 43 (102)
-++.|+.+|||.|......|.+..-.+..+-|
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i 54 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQLAADYPVVSV 54 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHHHhhCCEEEE
Confidence 36668899999999887777654333444333
No 214
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.014 Score=39.14 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=56.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~ 86 (102)
++.+|+.+..|.|.++.-.++..|++|+.+.++.... .....++.......++|++..+|-.+-....|.....
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~g-e~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~ 75 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKG-EQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLA 75 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeecccc-ccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHH
Confidence 4679999999999999999999999999986664322 2222334455666799999999998888877766433
No 215
>PTZ00102 disulphide isomerase; Provisional
Probab=96.60 E-value=0.0027 Score=46.46 Aligned_cols=22 Identities=9% Similarity=0.401 Sum_probs=18.3
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQ 34 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~ 34 (102)
++.|+++||++|+.+...|.+.
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~ 400 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNEL 400 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHH
Confidence 5568889999999999988654
No 216
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0063 Score=44.00 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=39.7
Q ss_pred CEEEEecCCChhHHHHHHHH---HhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeecc
Q 034165 12 AVVIFSKSSCCMCHAIKRLF---YDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSA 78 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l---~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~ 78 (102)
...-|.+-+|..|..+.+.| .-++-...-.-||- .-+|++.... +..+||++|.||+..|.-
T Consensus 119 ~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdG----a~Fq~Evear-~IMaVPtvflnGe~fg~G 183 (520)
T COG3634 119 HFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDG----ALFQDEVEAR-NIMAVPTVFLNGEEFGQG 183 (520)
T ss_pred eEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecc----hhhHhHHHhc-cceecceEEEcchhhccc
Confidence 46667777777777666655 44444455555542 2355555543 347899999999988654
No 217
>smart00594 UAS UAS domain.
Probab=96.51 E-value=0.033 Score=33.77 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=34.9
Q ss_pred hHHHhhhcCCC--EEEEecCCChhHHHHHH-HHHhcC------CCceEEEeccc-cchHHHHHHHHhhCCCCCccEEEE
Q 034165 2 DRVGRLASQKA--VVIFSKSSCCMCHAIKR-LFYDQG------VSPAIYELDED-ARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 2 ~~l~~~~~~~~--v~vy~~~~Cp~C~~~~~-~l~~~~------~~~~~~~id~~-~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
++++++.+..| ++.+..+||++|....+ +|.... -.|-..-+|.. +++. .+....+..++|.+.+
T Consensus 18 ~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~----~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 18 AAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQ----RVSQFYKLDSFPYVAI 92 (122)
T ss_pred HHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHH----HHHHhcCcCCCCEEEE
Confidence 34555666543 55577799999986544 342221 13444334332 2222 2333344578998855
No 218
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.47 E-value=0.0033 Score=42.96 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=17.8
Q ss_pred CEEEEecCCChhHHHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFY 32 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~ 32 (102)
.|.+|+.++||||+++..-+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 388999999999999876664
No 219
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.41 E-value=0.012 Score=37.96 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHhhhcCCC-EEE-EecCCChhHHHHHH-HHHhc------CCCceEEEecc--ccchHH-HHHHHHhhCCCCCccEEE-
Q 034165 3 RVGRLASQKA-VVI-FSKSSCCMCHAIKR-LFYDQ------GVSPAIYELDE--DARGKE-MEWALVRLGCNPSVPAVF- 69 (102)
Q Consensus 3 ~l~~~~~~~~-v~v-y~~~~Cp~C~~~~~-~l~~~------~~~~~~~~id~--~~~~~~-~~~~l~~~~~~~~vP~vf- 69 (102)
.++.+-+.++ |.+ ++.++|.+|+.+.+ .|... +-.|-.+.+|. .|+-.. .+......++..++|...
T Consensus 29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vf 108 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVF 108 (163)
T ss_dssp HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEE
T ss_pred HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEE
Confidence 3445555554 333 67799999997664 33322 22355555553 333322 333334445566788653
Q ss_pred E--CCeEee
Q 034165 70 I--GGKFVG 76 (102)
Q Consensus 70 v--~g~~ig 76 (102)
. +|+++-
T Consensus 109 ltPdg~p~~ 117 (163)
T PF03190_consen 109 LTPDGKPFF 117 (163)
T ss_dssp E-TTS-EEE
T ss_pred ECCCCCeee
Confidence 3 566664
No 220
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0078 Score=41.30 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=38.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCc-----eEEEeccccchHHHHHHHHhhCCCCCccEE--EECCeEe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSP-----AIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFV 75 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~-----~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~i 75 (102)
++=|+.+||..|++...+|..+.-+| -.+|||+-...+ .-.|-...|++ |.||..|
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~ta-------a~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTA-------ATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchh-------hhcCcccCceEEEEecCeEe
Confidence 45599999999999999998876554 345665433222 22444667865 8899776
No 221
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.021 Score=38.31 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=47.9
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCC--ceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEee----ccHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVS--PAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVG----SANTVMTLQ 85 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~--~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ig----g~~~l~~~~ 85 (102)
.|.+|+..+|-.|-..-+.|+++|+- +++++....+. . +++ .+..++|-||++|+.+. +++++..+.
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f-~----~~~--~~V~SvP~Vf~DGel~~~dpVdp~~ies~~ 84 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPF-L----AFE--KGVISVPSVFIDGELVYADPVDPEEIESIL 84 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChH-H----Hhh--cceeecceEEEcCeEEEcCCCCHHHHHHHH
Confidence 58899999999999999999999985 44454443221 1 222 23478999999999883 345555554
Q ss_pred H
Q 034165 86 L 86 (102)
Q Consensus 86 ~ 86 (102)
+
T Consensus 85 ~ 85 (265)
T COG5494 85 S 85 (265)
T ss_pred c
Confidence 3
No 222
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.17 E-value=0.0023 Score=39.12 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=24.2
Q ss_pred CCChhHHHHHHHHHh----cCCCce--EEEeccccchHHHHHHHHh--hCCCCCccEEEE
Q 034165 19 SSCCMCHAIKRLFYD----QGVSPA--IYELDEDARGKEMEWALVR--LGCNPSVPAVFI 70 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~----~~~~~~--~~~id~~~~~~~~~~~l~~--~~~~~~vP~vfv 70 (102)
+|||+|..+..++++ ..-... .+.+...+..+.-...++. ...-..+|+++-
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 599999999877643 222334 4455433322111112222 123367999975
No 223
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.16 E-value=0.08 Score=32.21 Aligned_cols=68 Identities=13% Similarity=0.045 Sum_probs=40.6
Q ss_pred HHhhhcCCC--EEEEec--CCCh---hHHHHHHHHHhcC--CCceEEEeccccchHHHHHHHHhhCCCC--CccEE--EE
Q 034165 4 VGRLASQKA--VVIFSK--SSCC---MCHAIKRLFYDQG--VSPAIYELDEDARGKEMEWALVRLGCNP--SVPAV--FI 70 (102)
Q Consensus 4 l~~~~~~~~--v~vy~~--~~Cp---~C~~~~~~l~~~~--~~~~~~~id~~~~~~~~~~~l~~~~~~~--~vP~v--fv 70 (102)
+.+.++.++ ++.|.. |||. .|.+...-+.+.. +.+-.+|++...+..+ .+...+++ .. .+|++ |.
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~-~~L~~~y~-I~~~gyPTl~lF~ 88 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLN-MELGERYK-LDKESYPVIYLFH 88 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhh-HHHHHHhC-CCcCCCCEEEEEe
Confidence 455666665 455888 8999 8888887775543 4455566653332222 22334444 45 79976 66
Q ss_pred CCe
Q 034165 71 GGK 73 (102)
Q Consensus 71 ~g~ 73 (102)
+|.
T Consensus 89 ~g~ 91 (116)
T cd03007 89 GGD 91 (116)
T ss_pred CCC
Confidence 773
No 224
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.11 E-value=0.07 Score=32.84 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=21.7
Q ss_pred EEEEecC-CChhHHHHHHHHHh-------cCCCceEEEecccc
Q 034165 13 VVIFSKS-SCCMCHAIKRLFYD-------QGVSPAIYELDEDA 47 (102)
Q Consensus 13 v~vy~~~-~Cp~C~~~~~~l~~-------~~~~~~~~~id~~~ 47 (102)
|+.|+.+ |||.|......|.+ .++.+-.+..+.++
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~ 74 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDP 74 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSH
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCH
Confidence 5567778 99999866655532 34555555555443
No 225
>PHA03075 glutaredoxin-like protein; Provisional
Probab=96.05 E-value=0.012 Score=35.78 Aligned_cols=33 Identities=18% Similarity=0.498 Sum_probs=28.1
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEec
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELD 44 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id 44 (102)
.+.+|++|.|+-|+.+.++|++..-+|+.+.|+
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 377899999999999999999988888765443
No 226
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.00 E-value=0.062 Score=32.44 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=30.3
Q ss_pred EEEEecCCChhHHHHHHHHHh----cC-CCceEEEecc-----ccchHHHHHHHHhhCCCCCccEEE
Q 034165 13 VVIFSKSSCCMCHAIKRLFYD----QG-VSPAIYELDE-----DARGKEMEWALVRLGCNPSVPAVF 69 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~----~~-~~~~~~~id~-----~~~~~~~~~~l~~~~~~~~vP~vf 69 (102)
|+.|..+|||.|.+....|.+ ++ ..+.++-|.. .....++++.+++.+ .++|.+.
T Consensus 27 vl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~ 91 (126)
T cd03012 27 LLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYG--ITYPVAN 91 (126)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcC--CCCCEEE
Confidence 556888999999877665533 32 2344554432 123344555555443 3466443
No 227
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.97 E-value=0.0097 Score=41.98 Aligned_cols=34 Identities=15% Similarity=0.406 Sum_probs=26.3
Q ss_pred HHHhhhcCCCEEE--EecCCChhHHHHHHHHHhcCC
Q 034165 3 RVGRLASQKAVVI--FSKSSCCMCHAIKRLFYDQGV 36 (102)
Q Consensus 3 ~l~~~~~~~~v~v--y~~~~Cp~C~~~~~~l~~~~~ 36 (102)
.+..++.++.+++ |..+||||++..+.+|.+...
T Consensus 5 N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~ 40 (375)
T KOG0912|consen 5 NIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAA 40 (375)
T ss_pred cHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHH
Confidence 4556677777555 888999999999999976543
No 228
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.97 E-value=0.038 Score=36.48 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=13.8
Q ss_pred EEEEecCCChhHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLF 31 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l 31 (102)
++.|..+|||.|.+-...|
T Consensus 43 lv~fwAswC~~C~~e~p~L 61 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQM 61 (199)
T ss_pred EEEEECCCCCChHHHHHHH
Confidence 5558889999998644444
No 229
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.94 E-value=0.015 Score=43.98 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=45.6
Q ss_pred HHHhhhcCCC---EEE-EecCCChhHHHHHHHHHh------cCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 3 RVGRLASQKA---VVI-FSKSSCCMCHAIKRLFYD------QGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 3 ~l~~~~~~~~---v~v-y~~~~Cp~C~~~~~~l~~------~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
+++++++.++ |++ |+.+||-.|+..++..-. .-..+.....|-..+..+.++.+++++. -++|.+.+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~-~G~P~~~f 540 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGV-FGVPTYLF 540 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCC-CCCCEEEE
Confidence 5566666554 555 999999999988887632 1123455566655666677778888764 78998755
No 230
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.055 Score=34.79 Aligned_cols=19 Identities=21% Similarity=0.742 Sum_probs=16.5
Q ss_pred EEEEecCCChhHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLF 31 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l 31 (102)
+.+|.+++|+||.+.++-+
T Consensus 46 llmfes~~C~yC~~~KKd~ 64 (182)
T COG2143 46 LLMFESNGCSYCERFKKDL 64 (182)
T ss_pred EEEEcCCCChHHHHHHHhh
Confidence 8889999999999877665
No 231
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=95.88 E-value=0.016 Score=39.30 Aligned_cols=28 Identities=18% Similarity=0.459 Sum_probs=23.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceE
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAI 40 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~ 40 (102)
|.+|++.+|..|..+-+.|.+..-+...
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~v 72 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGV 72 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCE
Confidence 7889999999999999999887655443
No 232
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=95.84 E-value=0.0062 Score=42.05 Aligned_cols=75 Identities=13% Similarity=0.303 Sum_probs=59.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcC
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNG 88 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g 88 (102)
.++|..|..-.+++|+-.+.++|++|+.++|+-. .++.....+.+.+...-+|++-.+...|-+..+|+++.++.
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~-~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErt 101 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLP-QGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERT 101 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCc-cccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHh
Confidence 7889999999999999999999999999999843 33333335556655577999888888889999999987763
No 233
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=95.79 E-value=0.09 Score=29.22 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=43.4
Q ss_pred CChhHHHHHHHHHhcCCC---ceEEEeccccchHHHHHHHHhhCCCCCccEEEE-CCeEeeccHHHHHHH
Q 034165 20 SCCMCHAIKRLFYDQGVS---PAIYELDEDARGKEMEWALVRLGCNPSVPAVFI-GGKFVGSANTVMTLQ 85 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~~~---~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv-~g~~igg~~~l~~~~ 85 (102)
--|.|-.+..+|+-.+.+ ++++... ++.. +....+|.+.. +|+.+.|+.++.+..
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~-n~~~----------Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN-NPWL----------SPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC-CCCc----------CCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 478999999999999998 6666555 3321 33457999999 999999999998753
No 234
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=95.47 E-value=0.038 Score=41.65 Aligned_cols=22 Identities=18% Similarity=0.171 Sum_probs=17.5
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQ 34 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~ 34 (102)
++.|+.+|||.|......|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 4558899999999988777544
No 235
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.47 E-value=0.009 Score=36.75 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=19.5
Q ss_pred CCCEEEEecCCChhHHHHHHHHHh
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYD 33 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~ 33 (102)
...|++|+.+.||+|.++...+++
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 346888999999999988777754
No 236
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.44 E-value=0.057 Score=33.80 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=28.6
Q ss_pred EEEEecCCChhHHHHHHHHHh----cC-CCceEEEeccc-------cchHHHHHHHHhhCCCCCccEEE
Q 034165 13 VVIFSKSSCCMCHAIKRLFYD----QG-VSPAIYELDED-------ARGKEMEWALVRLGCNPSVPAVF 69 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~----~~-~~~~~~~id~~-------~~~~~~~~~l~~~~~~~~vP~vf 69 (102)
++.|..+||| |..-...|.+ ++ -.+.++-|..+ .....+++.+++..+ .++|.+.
T Consensus 26 vl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~~ 92 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMFA 92 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceeee
Confidence 4458889999 9865555533 22 22444444321 123445555554222 4677663
No 237
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.18 Score=33.69 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=55.0
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHH
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
...+++.-+....+.-+|-+|+-.|++|+...+...+... .++.......+|++.|||..+..+..+.++.
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~----~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWE----ELKDKMPFGQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchh----hhcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence 3456666688899999999999999999999998665422 2333355678999999999999888776643
No 238
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.33 E-value=0.043 Score=39.77 Aligned_cols=21 Identities=19% Similarity=0.535 Sum_probs=17.3
Q ss_pred EEEEecCCChhHHHHHHHHHh
Q 034165 13 VVIFSKSSCCMCHAIKRLFYD 33 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~ 33 (102)
++.|..+||+.|+.....+.+
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~ 388 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEE 388 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 566899999999988887744
No 239
>PLN02412 probable glutathione peroxidase
Probab=95.24 E-value=0.14 Score=32.64 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=12.0
Q ss_pred EEEEecCCChhHHHHH
Q 034165 13 VVIFSKSSCCMCHAIK 28 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~ 28 (102)
++.|+.+|||.|.+..
T Consensus 33 lv~f~a~~C~~c~~e~ 48 (167)
T PLN02412 33 LIVNVASKCGLTDSNY 48 (167)
T ss_pred EEEEeCCCCCChHHHH
Confidence 4447789999998543
No 240
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.23 E-value=0.12 Score=31.46 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=29.8
Q ss_pred CEEEEecCCChh-HHHHHHHHHh----c---C---CCceEEEeccc-cchHHHHHHHHhhCCCCCccEEE
Q 034165 12 AVVIFSKSSCCM-CHAIKRLFYD----Q---G---VSPAIYELDED-ARGKEMEWALVRLGCNPSVPAVF 69 (102)
Q Consensus 12 ~v~vy~~~~Cp~-C~~~~~~l~~----~---~---~~~~~~~id~~-~~~~~~~~~l~~~~~~~~vP~vf 69 (102)
-|++|..+|||+ |......|.+ + + +.+-.+.+|.. +....+++.++..+ ..+|.+.
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~--~~~~~l~ 92 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG--PGWIGLT 92 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC--CCcEEEE
Confidence 366688899998 9754444422 2 2 33334444433 22344555555543 3456443
No 241
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=95.22 E-value=0.13 Score=33.83 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=25.9
Q ss_pred CEEEEecCCChhHHHHHHHH---HhcCCCc------eEEEeccc
Q 034165 12 AVVIFSKSSCCMCHAIKRLF---YDQGVSP------AIYELDED 46 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l---~~~~~~~------~~~~id~~ 46 (102)
.++-|..+|||.|+.-..+| ++.|+++ ..+|.|..
T Consensus 62 ~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 62 RVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred EEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 36669999999999777776 4456777 66777753
No 242
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.15 E-value=0.086 Score=36.47 Aligned_cols=82 Identities=13% Similarity=0.244 Sum_probs=48.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC---CceEEEeccccchHHHHHHHHhhCCCCCccEEEE--CCeEeeccHHHHHHH--
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGV---SPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI--GGKFVGSANTVMTLQ-- 85 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~---~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--~g~~igg~~~l~~~~-- 85 (102)
|+.++.+.+|-|..+-..|..+.. ..+++.|...... ...++ ....+|++++ +|..++.+-.+.++.
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-----~~~~f-~~~~LPtllvYk~G~l~~~~V~l~~~~g~ 223 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-----ASENF-PDKNLPTLLVYKNGDLIGNFVGLTDLLGD 223 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-----TTTTS--TTC-SEEEEEETTEEEEEECTGGGCT-T
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-----cccCC-cccCCCEEEEEECCEEEEeEEehHHhcCC
Confidence 444777999999999888865543 3455555432211 11122 2356888754 888887765443322
Q ss_pred --HcCchHHHHHhcCcc
Q 034165 86 --LNGSLKKLLKDAGAI 100 (102)
Q Consensus 86 --~~g~L~~~L~~~g~~ 100 (102)
....|+.+|...|++
T Consensus 224 df~~~dlE~~L~~~G~l 240 (265)
T PF02114_consen 224 DFFTEDLEAFLIEYGVL 240 (265)
T ss_dssp T--HHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 223688999999986
No 243
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.11 E-value=0.09 Score=31.19 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=27.9
Q ss_pred EEEEecC-CChhHHHHHHHHHhc----C-CCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 13 VVIFSKS-SCCMCHAIKRLFYDQ----G-VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 13 v~vy~~~-~Cp~C~~~~~~l~~~----~-~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
|+.|..+ |||.|.....-|.+. . ..+.++-|..++. .+..+.++... ..+|.+..
T Consensus 29 vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~-~~~~~~~~~~~--~~~~~~~D 89 (124)
T PF00578_consen 29 VLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP-EEIKQFLEEYG--LPFPVLSD 89 (124)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH-HHHHHHHHHHT--CSSEEEEE
T ss_pred EEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc-cchhhhhhhhc--cccccccC
Confidence 4445656 999997555444321 1 1234444443222 23444444444 55777665
No 244
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=94.86 E-value=0.097 Score=31.08 Aligned_cols=69 Identities=14% Similarity=0.286 Sum_probs=42.4
Q ss_pred EEecCCChhHHHHHHHHHhcCC--CceEEEeccccchHHHHHHHHhhCC----CCCccEEEECCe-EeeccHHHHHHHHc
Q 034165 15 IFSKSSCCMCHAIKRLFYDQGV--SPAIYELDEDARGKEMEWALVRLGC----NPSVPAVFIGGK-FVGSANTVMTLQLN 87 (102)
Q Consensus 15 vy~~~~Cp~C~~~~~~l~~~~~--~~~~~~id~~~~~~~~~~~l~~~~~----~~~vP~vfv~g~-~igg~~~l~~~~~~ 87 (102)
||....||+|.....++..... .+..+++...+... .+...+- ..+.-.+.-+|+ ...|++-+.++...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQA----LLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhh----HHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 4677899999999999988864 57777774333221 1111110 122334434776 88999887776554
No 245
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.85 E-value=0.15 Score=33.06 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=12.9
Q ss_pred EEEecCCChhHHHHHHHH
Q 034165 14 VIFSKSSCCMCHAIKRLF 31 (102)
Q Consensus 14 ~vy~~~~Cp~C~~~~~~l 31 (102)
+++..+|||.|.+-...|
T Consensus 46 v~n~atwCp~C~~e~p~l 63 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQL 63 (183)
T ss_pred EEEECCCCCchHHHHHHH
Confidence 356899999998644443
No 246
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.58 E-value=0.13 Score=31.47 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=13.4
Q ss_pred EEEE-ecCCChhHHHHHHHHH
Q 034165 13 VVIF-SKSSCCMCHAIKRLFY 32 (102)
Q Consensus 13 v~vy-~~~~Cp~C~~~~~~l~ 32 (102)
+++| ..+|||.|..-..-|.
T Consensus 27 vl~f~~~~~Cp~C~~~~~~l~ 47 (149)
T cd02970 27 VVVFYRGFGCPFCREYLRALS 47 (149)
T ss_pred EEEEECCCCChhHHHHHHHHH
Confidence 4444 3689999987555553
No 247
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=94.52 E-value=0.2 Score=34.11 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=13.9
Q ss_pred EEEEecCCChhHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLF 31 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l 31 (102)
|+.|+.+|||.|..-...|
T Consensus 103 vl~FwAswCp~c~~e~p~L 121 (236)
T PLN02399 103 LIVNVASKCGLTSSNYSEL 121 (236)
T ss_pred EEEEEcCCCcchHHHHHHH
Confidence 5668899999997544333
No 248
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=94.49 E-value=0.047 Score=38.72 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=36.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceE----EEeccccchHHHHHHHHhhCCCCCccEE-EECCeEe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAI----YELDEDARGKEMEWALVRLGCNPSVPAV-FIGGKFV 75 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~----~~id~~~~~~~~~~~l~~~~~~~~vP~v-fv~g~~i 75 (102)
.+-|..|||.+|++...++.+.|.+.+. +.+.+.+..+ +.....++ +.+.+|+| |..|.+.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~-f~aiAnef-giqGYPTIk~~kgd~a 112 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR-FPAIANEF-GIQGYPTIKFFKGDHA 112 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc-chhhHhhh-ccCCCceEEEecCCee
Confidence 4557789999999999999888766543 2333322221 11122233 34778887 4455444
No 249
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.23 E-value=0.23 Score=40.48 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=17.0
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQ 34 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~ 34 (102)
++.|+.+|||.|+.....|++.
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHH
Confidence 4448999999999877777543
No 250
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=94.22 E-value=0.23 Score=32.32 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=19.5
Q ss_pred CCEEEEe--cCCChhHHHHHHHH-------HhcCCCceEEEec
Q 034165 11 KAVVIFS--KSSCCMCHAIKRLF-------YDQGVSPAIYELD 44 (102)
Q Consensus 11 ~~v~vy~--~~~Cp~C~~~~~~l-------~~~~~~~~~~~id 44 (102)
..+++|. ..|||.|..-..-| .+.|+.+-.+.+|
T Consensus 32 k~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D 74 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD 74 (187)
T ss_pred CEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3455554 68999998643333 3445555445444
No 251
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.98 E-value=0.057 Score=34.18 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=18.6
Q ss_pred CCCEEEEecCCChhHHHHHHHHH
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFY 32 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~ 32 (102)
...|+.|+...||+|..+...+.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~ 38 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILE 38 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHH
Confidence 34588899999999998777763
No 252
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=93.84 E-value=0.39 Score=29.95 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=13.2
Q ss_pred EEEEecCCChhHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKR 29 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~ 29 (102)
+++|..+|||+|.+.-.
T Consensus 26 vv~~~as~C~~c~~~~~ 42 (153)
T TIGR02540 26 LVVNVASECGFTDQNYR 42 (153)
T ss_pred EEEEeCCCCCchhhhHH
Confidence 56688999999975444
No 253
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=93.80 E-value=0.49 Score=30.00 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=13.7
Q ss_pred EEEEecCCChhHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLF 31 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l 31 (102)
+++|..++||.|.....-|
T Consensus 29 ll~f~~t~Cp~c~~~~~~l 47 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRL 47 (171)
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 5668889999997544444
No 254
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.77 E-value=0.26 Score=36.62 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=48.5
Q ss_pred cCCChhHHHHHHHHHhcC--C-CceEEEeccccchHH--HHHHHHhhCCC--CCccEEEE-------CCeEeeccHHHHH
Q 034165 18 KSSCCMCHAIKRLFYDQG--V-SPAIYELDEDARGKE--MEWALVRLGCN--PSVPAVFI-------GGKFVGSANTVMT 83 (102)
Q Consensus 18 ~~~Cp~C~~~~~~l~~~~--~-~~~~~~id~~~~~~~--~~~~l~~~~~~--~~vP~vfv-------~g~~igg~~~l~~ 83 (102)
+.+|||=.++.-+-+.+. + +|.+..|..+|+.++ +++.+.. .+| ..-|.|.- .|..+||++|+.+
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~-~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e 79 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKK-NGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLE 79 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHh-cCCccCCCCeeHHHHHhcCCCceEecChHHHHH
Confidence 368999999887776654 3 589999998887543 4444443 333 46698864 6899999999888
Q ss_pred HHH
Q 034165 84 LQL 86 (102)
Q Consensus 84 ~~~ 86 (102)
+.+
T Consensus 80 ~~~ 82 (452)
T cd05295 80 YAE 82 (452)
T ss_pred HHH
Confidence 654
No 255
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=93.62 E-value=0.64 Score=28.13 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=24.8
Q ss_pred EEEEe-cCCChhHHHHHHHH-------HhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEE
Q 034165 13 VVIFS-KSSCCMCHAIKRLF-------YDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAV 68 (102)
Q Consensus 13 v~vy~-~~~Cp~C~~~~~~l-------~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v 68 (102)
+++|+ +.|||.|.....-| .+.++ .++-|..+. ...+++.+++.+ ..+|.+
T Consensus 27 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~--~vv~is~d~-~~~~~~~~~~~~--~~~~~l 85 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDFRDLYEEFKALGA--VVIGVSPDS-VESHAKFAEKYG--LPFPLL 85 (140)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCC-HHHHHHHHHHhC--CCceEE
Confidence 33344 57899997543333 33344 444444322 233444555443 345533
No 256
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.42 E-value=0.074 Score=30.06 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.6
Q ss_pred EecCCChhHHHHHHHHHhc
Q 034165 16 FSKSSCCMCHAIKRLFYDQ 34 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~ 34 (102)
|+++|||+|..+...|.+.
T Consensus 39 f~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred EEcCcCHHHHhhchhHHHH
Confidence 3599999999998888554
No 257
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.32 E-value=0.095 Score=32.59 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=17.6
Q ss_pred CCccEEEECCeEeeccHHHHHH
Q 034165 63 PSVPAVFIGGKFVGSANTVMTL 84 (102)
Q Consensus 63 ~~vP~vfv~g~~igg~~~l~~~ 84 (102)
.++|+++|||+.+.|..++.++
T Consensus 135 ~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 135 TGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp SSSSEEEETTCEEETTTSHHHH
T ss_pred ccccEEEECCEEeCCCCCHHHH
Confidence 6899999999999876655544
No 258
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=93.12 E-value=0.45 Score=31.60 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=36.6
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHh
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVR 58 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~ 58 (102)
...+.+|.+..||.|......+...+-++.++-|++..+...++.....
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~WA~~ 157 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQWANR 157 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHHHHH
Confidence 3468999999999998887777777888888888865555555555443
No 259
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=0.041 Score=41.15 Aligned_cols=27 Identities=19% Similarity=0.371 Sum_probs=21.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCce
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPA 39 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~ 39 (102)
.+-|..|||++|++...++++++-.|+
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~~ 414 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKYK 414 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHhc
Confidence 344888999999999999988765543
No 260
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.02 E-value=0.36 Score=31.80 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=18.7
Q ss_pred EecCCChhHHHHHHH-------HHhcCCCceEEEecc
Q 034165 16 FSKSSCCMCHAIKRL-------FYDQGVSPAIYELDE 45 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~-------l~~~~~~~~~~~id~ 45 (102)
|..++||.|..-..- |++.|+.+--+.+|.
T Consensus 33 ~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 33 HPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred ecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 566799999854333 345566655566554
No 261
>PRK13190 putative peroxiredoxin; Provisional
Probab=92.85 E-value=0.36 Score=31.87 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=17.3
Q ss_pred EecCCChhHHHHHHHH-------HhcCCCceEEEecc
Q 034165 16 FSKSSCCMCHAIKRLF-------YDQGVSPAIYELDE 45 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l-------~~~~~~~~~~~id~ 45 (102)
|..++||.|..-..-| ++.|+.+--+.+|.
T Consensus 35 ~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~ 71 (202)
T PRK13190 35 HPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDS 71 (202)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5678999997543333 33455444444443
No 262
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.70 E-value=0.3 Score=30.30 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=15.5
Q ss_pred CEEEEecCCChhHHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLF 31 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l 31 (102)
.|++|+...||+|.++-..+
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHH
T ss_pred EEEEEECCCCHhHHHHHHHH
Confidence 48889999999998775554
No 263
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=92.68 E-value=0.59 Score=29.79 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=13.0
Q ss_pred CEEEEe--cCCChhHHHHHHHH
Q 034165 12 AVVIFS--KSSCCMCHAIKRLF 31 (102)
Q Consensus 12 ~v~vy~--~~~Cp~C~~~~~~l 31 (102)
.++++. .+|||.|......|
T Consensus 31 ~vvl~F~~~~~c~~C~~~l~~l 52 (173)
T cd03015 31 WVVLFFYPLDFTFVCPTEIIAF 52 (173)
T ss_pred EEEEEEECCCCCCcCHHHHHHH
Confidence 344444 57999998655554
No 264
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=92.67 E-value=1.1 Score=27.41 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=12.4
Q ss_pred EEEEe-cCCChhHHHHHHHH
Q 034165 13 VVIFS-KSSCCMCHAIKRLF 31 (102)
Q Consensus 13 v~vy~-~~~Cp~C~~~~~~l 31 (102)
|++|. .+|||.|.....-|
T Consensus 32 vl~f~~~~~c~~C~~~~~~l 51 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCAL 51 (149)
T ss_pred EEEEeCCCCCccHHHHHHHH
Confidence 33344 68999998555444
No 265
>PRK13599 putative peroxiredoxin; Provisional
Probab=92.63 E-value=0.41 Score=32.01 Aligned_cols=38 Identities=8% Similarity=-0.045 Sum_probs=20.6
Q ss_pred EEecCCChhHHHHH-------HHHHhcCCCceEEEeccccchHHH
Q 034165 15 IFSKSSCCMCHAIK-------RLFYDQGVSPAIYELDEDARGKEM 52 (102)
Q Consensus 15 vy~~~~Cp~C~~~~-------~~l~~~~~~~~~~~id~~~~~~~~ 52 (102)
.|-.++||.|..-. .-|++.|+.+--+.+|......++
T Consensus 35 ~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w 79 (215)
T PRK13599 35 SHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKW 79 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 35567999998533 233445665555555543333333
No 266
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=92.55 E-value=0.93 Score=27.36 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=12.2
Q ss_pred EEEEe-cCCChhHHHHHHHH
Q 034165 13 VVIFS-KSSCCMCHAIKRLF 31 (102)
Q Consensus 13 v~vy~-~~~Cp~C~~~~~~l 31 (102)
+++|. ..|||.|.....-|
T Consensus 26 ll~f~~~~~c~~C~~~~~~l 45 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAF 45 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHH
Confidence 34444 57999998654444
No 267
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=0.15 Score=36.73 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=34.6
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCC----CceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGV----SPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~----~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
.-++.|..|||++|.+....+.+..- ....-.||..... .+...++...+|++.+
T Consensus 49 ~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~-----~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 49 PWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK-----DLCEKYGIQGFPTLKV 107 (383)
T ss_pred ceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH-----HHHHhcCCccCcEEEE
Confidence 34788999999999988877764421 2334444433321 3444456688998854
No 268
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=91.84 E-value=0.86 Score=28.28 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=10.3
Q ss_pred CCCEEE-Eec-CCChhHHHH
Q 034165 10 QKAVVI-FSK-SSCCMCHAI 27 (102)
Q Consensus 10 ~~~v~v-y~~-~~Cp~C~~~ 27 (102)
...+++ |+. .+||.|...
T Consensus 30 gk~~ll~f~~~~~~p~C~~~ 49 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQ 49 (154)
T ss_pred CCCEEEEEECCCCCCchHHH
Confidence 334444 443 479999643
No 269
>PRK13189 peroxiredoxin; Provisional
Probab=91.63 E-value=0.65 Score=31.17 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=17.6
Q ss_pred EecCCChhHHHHH-------HHHHhcCCCceEEEecc
Q 034165 16 FSKSSCCMCHAIK-------RLFYDQGVSPAIYELDE 45 (102)
Q Consensus 16 y~~~~Cp~C~~~~-------~~l~~~~~~~~~~~id~ 45 (102)
|-.++||.|..-. .-|++.|+.+--+.+|.
T Consensus 43 ~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 43 HPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 5568999998532 23344565544455553
No 270
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=91.52 E-value=0.55 Score=30.00 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=21.4
Q ss_pred CCCCCccEEEECCeEeeccHHHHHHH
Q 034165 60 GCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 60 ~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
.|..++|+++|||+.+-|.+.+..+.
T Consensus 163 ~gi~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 163 RGVFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred cCCCcCCeEEECCeeecccccHHHHH
Confidence 45689999999999999988776553
No 271
>PRK13191 putative peroxiredoxin; Provisional
Probab=91.44 E-value=0.69 Score=30.92 Aligned_cols=38 Identities=11% Similarity=-0.006 Sum_probs=22.2
Q ss_pred EEecCCChhHHHHHHH-------HHhcCCCceEEEeccccchHHH
Q 034165 15 IFSKSSCCMCHAIKRL-------FYDQGVSPAIYELDEDARGKEM 52 (102)
Q Consensus 15 vy~~~~Cp~C~~~~~~-------l~~~~~~~~~~~id~~~~~~~~ 52 (102)
+|-.++||.|..-..- |++.|+.+--+.+|......++
T Consensus 40 f~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw 84 (215)
T PRK13191 40 SHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEW 84 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 4566899999864433 3445665555666654433333
No 272
>PRK15000 peroxidase; Provisional
Probab=91.21 E-value=1.1 Score=29.48 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=13.5
Q ss_pred CCCEEEEecC--CChhHHHHHHHH
Q 034165 10 QKAVVIFSKS--SCCMCHAIKRLF 31 (102)
Q Consensus 10 ~~~v~vy~~~--~Cp~C~~~~~~l 31 (102)
...+++|+.+ +||.|..-..-|
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l 57 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAF 57 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHH
Confidence 3446665555 799998643333
No 273
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=90.95 E-value=1.8 Score=25.76 Aligned_cols=65 Identities=20% Similarity=0.066 Sum_probs=39.3
Q ss_pred HHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCcc-EEEEC--CeEe
Q 034165 4 VGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVP-AVFIG--GKFV 75 (102)
Q Consensus 4 l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP-~vfv~--g~~i 75 (102)
+.++-+...+.+++-+....-..+++++++.+++|..+.+|... .+....+...+| +++++ |+.+
T Consensus 47 l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-------~~~~~~~v~~~P~~~~ld~~G~v~ 114 (127)
T cd03010 47 LMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG-------RVGIDLGVYGVPETFLIDGDGIIR 114 (127)
T ss_pred HHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc-------hHHHhcCCCCCCeEEEECCCceEE
Confidence 33333334466655554445567788899999988777777433 223334557799 66664 6544
No 274
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=90.76 E-value=1 Score=27.60 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=31.6
Q ss_pred CChhHH-----------HHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEe
Q 034165 20 SCCMCH-----------AIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFV 75 (102)
Q Consensus 20 ~Cp~C~-----------~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~i 75 (102)
+|+-|. .++..|+..|+...+..+...+. .+.+.. .+-|.|.+||+.+
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~------~~~~~~--~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE------EFARQP--LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH------HHhhcc--cCCCeeeECCEeh
Confidence 788886 45566788898766555543332 122212 5689999999977
No 275
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=90.70 E-value=0.88 Score=29.79 Aligned_cols=17 Identities=18% Similarity=0.172 Sum_probs=11.2
Q ss_pred CEEEE-e-cCCChhHHHHH
Q 034165 12 AVVIF-S-KSSCCMCHAIK 28 (102)
Q Consensus 12 ~v~vy-~-~~~Cp~C~~~~ 28 (102)
.+++| . ..+||.|..-.
T Consensus 33 ~vvL~F~P~~~~p~C~~el 51 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTEL 51 (187)
T ss_pred eEEEEEECCCCCCcCHHHH
Confidence 45554 4 58999998633
No 276
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.93 E-value=0.94 Score=34.33 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=32.7
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC-----CCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQG-----VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~-----~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
.+.+|..+.|++|..++.+|++.. ++++++|...+.. ...+++ ..-+|.+.+
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~------~~~~~~-v~~~P~~~i 425 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPE------SETLPK-ITKLPTVAL 425 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchh------hHhhcC-CCcCCEEEE
Confidence 466788889999999999998753 3344444433221 222333 356788876
No 277
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=89.92 E-value=0.074 Score=36.19 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=40.4
Q ss_pred HhhhcCCCEEEEecCCChhHHHHHHHHHhc-------CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE--CCe
Q 034165 5 GRLASQKAVVIFSKSSCCMCHAIKRLFYDQ-------GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI--GGK 73 (102)
Q Consensus 5 ~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~-------~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv--~g~ 73 (102)
+.+++..=.+.|++||||.|......|+.+ ++..-++|+..++... .++.. ...|+|+. +|.
T Consensus 35 ~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLs------GRF~v-taLptIYHvkDGe 105 (248)
T KOG0913|consen 35 KELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLS------GRFLV-TALPTIYHVKDGE 105 (248)
T ss_pred hhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccc------eeeEE-EecceEEEeeccc
Confidence 444444456778899999999988888654 4556677877666421 22222 45788864 554
No 278
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=89.88 E-value=1.8 Score=26.97 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=33.2
Q ss_pred CChhHHHHHHHHHhc----C---CCceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCeEeecc
Q 034165 20 SCCMCHAIKRLFYDQ----G---VSPAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFVGSA 78 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~----~---~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~igg~ 78 (102)
.+|.+..+.-+|.+. + +.+-.+|+|.++ .+....+..++|++ |-||+.++..
T Consensus 47 r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~-------~LA~~fgV~siPTLl~FkdGk~v~~i 107 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE-------AIGDRFGVFRFPATLVFTGGNYRGVL 107 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH-------HHHHHcCCccCCEEEEEECCEEEEEE
Confidence 488888777777544 2 234455666443 34444566899977 6699888654
No 279
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=89.57 E-value=1.3 Score=30.15 Aligned_cols=79 Identities=18% Similarity=0.343 Sum_probs=51.7
Q ss_pred EecCCChhHHHHHHHHHhcCCCceE---EEeccccchHHHHHHHHhhCCCCCccEE--EECCeEeeccHHHHH----HHH
Q 034165 16 FSKSSCCMCHAIKRLFYDQGVSPAI---YELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFVGSANTVMT----LQL 86 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~~~~~~---~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~igg~~~l~~----~~~ 86 (102)
..-+.-+-|......+.=+..+|.. ..+....-+.. .+++ ...+|++ |-||+.||.|-.+.+ =.-
T Consensus 166 IYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas-----~~F~-~n~lP~LliYkgGeLIgNFv~va~qlgedff 239 (273)
T KOG3171|consen 166 IYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGAS-----DRFS-LNVLPTLLIYKGGELIGNFVSVAEQLGEDFF 239 (273)
T ss_pred EecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccch-----hhhc-ccCCceEEEeeCCchhHHHHHHHHHHhhhhh
Confidence 4557888999888888777777654 34443322211 1222 1457765 669999999976543 344
Q ss_pred cCchHHHHHhcCcc
Q 034165 87 NGSLKKLLKDAGAI 100 (102)
Q Consensus 87 ~g~L~~~L~~~g~~ 100 (102)
.|.|.+.|+.-|++
T Consensus 240 a~dle~FL~e~gll 253 (273)
T KOG3171|consen 240 AGDLESFLNEYGLL 253 (273)
T ss_pred hhhHHHHHHHcCCC
Confidence 68899999988875
No 280
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=89.35 E-value=0.76 Score=27.99 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.7
Q ss_pred CCCCCccEEEECCeEeeccHHHHHHH
Q 034165 60 GCNPSVPAVFIGGKFVGSANTVMTLQ 85 (102)
Q Consensus 60 ~~~~~vP~vfv~g~~igg~~~l~~~~ 85 (102)
.+..++|+++|||+.+.|..+...+.
T Consensus 125 ~gi~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 125 LGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred cCCCcCCeEEECCEEecCCCCHHHHH
Confidence 45578999999999999987765543
No 281
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.10 E-value=0.29 Score=33.22 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=42.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC-------ceEEEeccccchHHHHHHHHhhCCCCCccEE--EECCeEeec
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVS-------PAIYELDEDARGKEMEWALVRLGCNPSVPAV--FIGGKFVGS 77 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~-------~~~~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~~igg 77 (102)
++-|...|.|.|.+....+.++.++ |-.+||..-++..+ +=.+...++.++.|++ |-+|+.+..
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~-kfris~s~~srQLPT~ilFq~gkE~~R 220 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAA-KFRISLSPGSRQLPTYILFQKGKEVSR 220 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHH-heeeccCcccccCCeEEEEccchhhhc
Confidence 5557779999999999998877655 45688887776544 1122233556777865 556665543
No 282
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=88.98 E-value=2.2 Score=27.90 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=31.4
Q ss_pred EEEEecCCChhHHHHHH---HHHhcC-CCceEEEeccc-------cchHHHHHHHHhhCCCCCccEE---EECCe
Q 034165 13 VVIFSKSSCCMCHAIKR---LFYDQG-VSPAIYELDED-------ARGKEMEWALVRLGCNPSVPAV---FIGGK 73 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~---~l~~~~-~~~~~~~id~~-------~~~~~~~~~l~~~~~~~~vP~v---fv~g~ 73 (102)
+++|+.+||++|..... +.++++ -.+.++=+..+ ....++.+.++...+ .++|.+ -|||.
T Consensus 29 LVvf~AS~C~~~~q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g-~~Fpv~~k~dvnG~ 102 (183)
T PRK10606 29 LIVNVASKCGLTPQYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG-VTFPMFSKIEVNGE 102 (183)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC-CCceeEEEEccCCC
Confidence 56689999999974332 223332 22444444321 223445555542233 567865 35664
No 283
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=88.89 E-value=0.46 Score=30.36 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=23.4
Q ss_pred CEEEEecCCChhHHHHHHHH----Hhc-CCCceEEEec
Q 034165 12 AVVIFSKSSCCMCHAIKRLF----YDQ-GVSPAIYELD 44 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l----~~~-~~~~~~~~id 44 (102)
+|++|+...||+|-.+...| ++. ++++....+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 48899999999997655554 455 6666655554
No 284
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=88.37 E-value=0.96 Score=30.13 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=48.4
Q ss_pred HHHhhhcCCCEEE-EecCCChhHHHHHH---HHHhcCCCceE--EEeccccchHHHHHHHHhhCCCCCccEE--EECCe-
Q 034165 3 RVGRLASQKAVVI-FSKSSCCMCHAIKR---LFYDQGVSPAI--YELDEDARGKEMEWALVRLGCNPSVPAV--FIGGK- 73 (102)
Q Consensus 3 ~l~~~~~~~~v~v-y~~~~Cp~C~~~~~---~l~~~~~~~~~--~~id~~~~~~~~~~~l~~~~~~~~vP~v--fv~g~- 73 (102)
.+....++.+|+. |..+.---|+-+-. +|...-+...+ +|....|- +..--+...+|.| |.||+
T Consensus 77 f~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PF-------lv~kL~IkVLP~v~l~k~g~~ 149 (211)
T KOG1672|consen 77 FFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPF-------LVTKLNIKVLPTVALFKNGKT 149 (211)
T ss_pred HHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCce-------eeeeeeeeEeeeEEEEEcCEE
Confidence 3444446667666 77777556654444 44444444444 44444442 2222334677876 77885
Q ss_pred --EeeccHHHH--HHHHcCchHHHHHhcCc
Q 034165 74 --FVGSANTVM--TLQLNGSLKKLLKDAGA 99 (102)
Q Consensus 74 --~igg~~~l~--~~~~~g~L~~~L~~~g~ 99 (102)
.|.||++|= .=.....|+..|...|+
T Consensus 150 ~D~iVGF~dLGnkDdF~te~LE~rL~~S~v 179 (211)
T KOG1672|consen 150 VDYVVGFTDLGNKDDFTTETLENRLAKSGV 179 (211)
T ss_pred EEEEeeHhhcCCCCcCcHHHHHHHHhhccc
Confidence 457787751 12223356666665554
No 285
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=87.93 E-value=2.5 Score=29.28 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=21.1
Q ss_pred cCCCEEEEe--cCCChhHHHHH-------HHHHhcCCCceEEEecc
Q 034165 9 SQKAVVIFS--KSSCCMCHAIK-------RLFYDQGVSPAIYELDE 45 (102)
Q Consensus 9 ~~~~v~vy~--~~~Cp~C~~~~-------~~l~~~~~~~~~~~id~ 45 (102)
+...+++|. ..+||.|..-. .-+++.|+++--+.+|.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 444566654 47999998532 23344565555555554
No 286
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.83 E-value=1.6 Score=31.54 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=23.9
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcC------CCceEEEeccc
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQG------VSPAIYELDED 46 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~------~~~~~~~id~~ 46 (102)
..++.|..|||++|+.....+++.. ..+....++..
T Consensus 164 ~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 164 DWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred ceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 3478888999999998866664432 33455555533
No 287
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=87.48 E-value=4.5 Score=25.95 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=45.0
Q ss_pred EecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhh------------CC----------CCCccEEE--EC
Q 034165 16 FSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRL------------GC----------NPSVPAVF--IG 71 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~------------~~----------~~~vP~vf--v~ 71 (102)
=++++-+.-+++..+|+++|++|+..-++-+-....+.++.+.. ++ .+++|+|= |.
T Consensus 10 GS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~ 89 (162)
T COG0041 10 GSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQ 89 (162)
T ss_pred cCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEeccCc
Confidence 34456778899999999999999998888765554433333221 11 14567663 35
Q ss_pred CeEeeccHHHHH
Q 034165 72 GKFVGSANTVMT 83 (102)
Q Consensus 72 g~~igg~~~l~~ 83 (102)
.+..+|.|.|..
T Consensus 90 s~~L~GlDSL~S 101 (162)
T COG0041 90 SKALSGLDSLLS 101 (162)
T ss_pred cccccchHHHHH
Confidence 677778776644
No 288
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.37 E-value=5.9 Score=31.09 Aligned_cols=70 Identities=14% Similarity=0.283 Sum_probs=41.5
Q ss_pred HHHhhhcCC-CEEE-EecCCChhHHHH----------HHHHHhcCCCceEEEecc--ccchHH-HHHHHHhhCCCCCccE
Q 034165 3 RVGRLASQK-AVVI-FSKSSCCMCHAI----------KRLFYDQGVSPAIYELDE--DARGKE-MEWALVRLGCNPSVPA 67 (102)
Q Consensus 3 ~l~~~~~~~-~v~v-y~~~~Cp~C~~~----------~~~l~~~~~~~~~~~id~--~~~~~~-~~~~l~~~~~~~~vP~ 67 (102)
++..+-+.+ +|.+ .+.++|.+|+-+ .++|.+ .|-.|.||. .|+-.. ..+..+..+|+.++|.
T Consensus 35 Af~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL 111 (667)
T COG1331 35 AFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDREERPDVDSLYMNASQAITGQGGWPL 111 (667)
T ss_pred HHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---CceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence 344444444 5555 777999999843 333333 455555654 445444 4456666788888995
Q ss_pred E-EE--CCeEe
Q 034165 68 V-FI--GGKFV 75 (102)
Q Consensus 68 v-fv--~g~~i 75 (102)
- |+ +|+++
T Consensus 112 tVfLTPd~kPF 122 (667)
T COG1331 112 TVFLTPDGKPF 122 (667)
T ss_pred eEEECCCCcee
Confidence 4 44 56655
No 289
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=86.10 E-value=1.5 Score=28.79 Aligned_cols=28 Identities=4% Similarity=-0.042 Sum_probs=20.0
Q ss_pred CEEEEecCCChhHHHHHHHH----HhcCCCce
Q 034165 12 AVVIFSKSSCCMCHAIKRLF----YDQGVSPA 39 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l----~~~~~~~~ 39 (102)
+|.+|+...||+|--+.+-| +..++++.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~ 33 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDIT 33 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEE
Confidence 58899999999997655555 44555544
No 290
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=85.91 E-value=0.35 Score=36.89 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=37.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCc----eEEEeccccchHHHHHHHHhhCCCCCccEEEE------C---CeEeecc
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSP----AIYELDEDARGKEMEWALVRLGCNPSVPAVFI------G---GKFVGSA 78 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~----~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv------~---g~~igg~ 78 (102)
++-|..+||++|++....+++...+. .++.|-.-+...+.-..+.+-.+.+.+|.+.- + |..+.|.
T Consensus 61 lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~ 139 (606)
T KOG1731|consen 61 LVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGP 139 (606)
T ss_pred HHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCC
Confidence 55567799999999999998775442 22222222222111113333334577887743 2 6667663
No 291
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=85.86 E-value=1.6 Score=26.56 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=12.8
Q ss_pred CCEEE-EecCC-ChhHHHHHHHH
Q 034165 11 KAVVI-FSKSS-CCMCHAIKRLF 31 (102)
Q Consensus 11 ~~v~v-y~~~~-Cp~C~~~~~~l 31 (102)
.++++ |..+| ||.|..-...|
T Consensus 27 k~vvl~f~~~~~c~~C~~e~~~l 49 (143)
T cd03014 27 KVKVISVFPSIDTPVCATQTKRF 49 (143)
T ss_pred CeEEEEEEcCCCCCcCHHHHHHH
Confidence 34444 45555 79998665555
No 292
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=85.32 E-value=4.9 Score=26.70 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=30.7
Q ss_pred EEEEecCCCh-hHHH----HHHHHHhc----CCCceEEEeccccchHHHHHHHHhhCC-CCCccEEEECC
Q 034165 13 VVIFSKSSCC-MCHA----IKRLFYDQ----GVSPAIYELDEDARGKEMEWALVRLGC-NPSVPAVFIGG 72 (102)
Q Consensus 13 v~vy~~~~Cp-~C~~----~~~~l~~~----~~~~~~~~id~~~~~~~~~~~l~~~~~-~~~vP~vfv~g 72 (102)
++.|+.+.|| -|.- ...++++. +.++..+.|..+|+..- .+.++++.. ....+-+.+-|
T Consensus 71 lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt-p~~lk~Y~~~~~~~~~~~ltg 139 (207)
T COG1999 71 LVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT-PEVLKKYAELNFDPRWIGLTG 139 (207)
T ss_pred EEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC-HHHHHHHhcccCCCCeeeeeC
Confidence 6667778888 5653 44444444 45566666655554321 335555543 22333444444
No 293
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=84.58 E-value=3.4 Score=27.01 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=18.5
Q ss_pred EEEEec--CCChhHHHHHHH-------HHhcCCCceEEEeccc
Q 034165 13 VVIFSK--SSCCMCHAIKRL-------FYDQGVSPAIYELDED 46 (102)
Q Consensus 13 v~vy~~--~~Cp~C~~~~~~-------l~~~~~~~~~~~id~~ 46 (102)
+++|.. .+||.|.....- |++.|+++--+.+|..
T Consensus 39 ~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 39 VVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 444443 568888753332 3445666666666543
No 294
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=84.54 E-value=3.1 Score=26.16 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=14.2
Q ss_pred HhhhcCCCEEEEecC--CChhHHHH
Q 034165 5 GRLASQKAVVIFSKS--SCCMCHAI 27 (102)
Q Consensus 5 ~~~~~~~~v~vy~~~--~Cp~C~~~ 27 (102)
.+..+..++++|..| +||.|..-
T Consensus 24 ~~~~~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 24 SELFKGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred HHHhCCCcEEEEEeCCCCCCCCchh
Confidence 333344466666665 79999754
No 295
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=83.92 E-value=7.1 Score=23.36 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=37.5
Q ss_pred HHHhhhcC---CCEEEEecC-CChhHHHHHHHHHhc----C--CCceEEEeccccchHHHHHHHHhh-CCCCCccEEEE-
Q 034165 3 RVGRLASQ---KAVVIFSKS-SCCMCHAIKRLFYDQ----G--VSPAIYELDEDARGKEMEWALVRL-GCNPSVPAVFI- 70 (102)
Q Consensus 3 ~l~~~~~~---~~v~vy~~~-~Cp~C~~~~~~l~~~----~--~~~~~~~id~~~~~~~~~~~l~~~-~~~~~vP~vfv- 70 (102)
.+.++++. .++++|=-+ +||-+..|.+-|++. . +++-++++-.+-+ +-..+.+. +..=.-|++++
T Consensus 9 ql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~---vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 9 QLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRP---VSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp HHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHH---HHHHHHHHHT----SSEEEEE
T ss_pred HHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCch---hHHHHHHHhCCCcCCCcEEEE
Confidence 34455553 456666554 599999888777443 2 6666777654432 23344433 43335687754
Q ss_pred -CCeEeec
Q 034165 71 -GGKFVGS 77 (102)
Q Consensus 71 -~g~~igg 77 (102)
||+.+-.
T Consensus 86 ~~g~~v~~ 93 (105)
T PF11009_consen 86 KNGKVVWH 93 (105)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 8887743
No 296
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=83.12 E-value=6 Score=25.39 Aligned_cols=71 Identities=8% Similarity=0.053 Sum_probs=48.6
Q ss_pred EecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhh----------------------CCCCCccEEEE--C
Q 034165 16 FSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRL----------------------GCNPSVPAVFI--G 71 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~----------------------~~~~~vP~vfv--~ 71 (102)
=+.++=|.++++...|+++|++|+..-+.-+-....+.+.++.. .+..++|+|=+ .
T Consensus 6 GS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~~ 85 (156)
T TIGR01162 6 GSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPVP 85 (156)
T ss_pred CcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEecCC
Confidence 34467899999999999999999988887776665555554432 12256677643 3
Q ss_pred CeEeeccHHHHHHHH
Q 034165 72 GKFVGSANTVMTLQL 86 (102)
Q Consensus 72 g~~igg~~~l~~~~~ 86 (102)
....+|.|.+..+.+
T Consensus 86 ~~~l~G~daLlS~vq 100 (156)
T TIGR01162 86 SKALSGLDSLLSIVQ 100 (156)
T ss_pred ccCCCCHHHHHHHhc
Confidence 445677777766655
No 297
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=82.59 E-value=8.4 Score=24.72 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=26.5
Q ss_pred EEEEecCCCh-hHHHH-------HHHHHhcCCCceEEEeccccc--h-HHHHHHHHhhC
Q 034165 13 VVIFSKSSCC-MCHAI-------KRLFYDQGVSPAIYELDEDAR--G-KEMEWALVRLG 60 (102)
Q Consensus 13 v~vy~~~~Cp-~C~~~-------~~~l~~~~~~~~~~~id~~~~--~-~~~~~~l~~~~ 60 (102)
++.|+.+.|| -|... .+.|.+.+.++..+-|..+|+ . +.++++.+.++
T Consensus 56 lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~ 114 (174)
T PF02630_consen 56 LVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFG 114 (174)
T ss_dssp EEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHT
T ss_pred EEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 6668889998 67633 333344455666655554443 3 34666666654
No 298
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=82.41 E-value=7.6 Score=24.26 Aligned_cols=64 Identities=16% Similarity=0.342 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcCchHHHHHh
Q 034165 23 MCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLKD 96 (102)
Q Consensus 23 ~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g~L~~~L~~ 96 (102)
|-.++++.|.++|+++..+++..... .++.+.+... -.||+.| |.-..+.+..++-.|.+.|++
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~-~~~~~~i~~a------d~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRND-ADILEAIREA------DAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGH-HHHHHHHHHS------SEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCCh-HHHHHHHHhC------CEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 34678999999998877777765432 3444455433 3677665 122223333333345555554
No 299
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=82.36 E-value=0.94 Score=29.87 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.8
Q ss_pred CCEEEEecCCChhHHHHHH
Q 034165 11 KAVVIFSKSSCCMCHAIKR 29 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~ 29 (102)
..|+-|+.-.||+|.+...
T Consensus 39 ~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 39 PQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CeEEEEeCCCCccHHHhcc
Confidence 3588899999999998654
No 300
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=81.34 E-value=11 Score=23.69 Aligned_cols=72 Identities=13% Similarity=0.339 Sum_probs=42.6
Q ss_pred hcCCCEEEEecCCChhHHHHHHHHHhcC--CCceEEEeccccchHHHHHHHHhhCCCCCc--cEEEE-CCeEeeccHHHH
Q 034165 8 ASQKAVVIFSKSSCCMCHAIKRLFYDQG--VSPAIYELDEDARGKEMEWALVRLGCNPSV--PAVFI-GGKFVGSANTVM 82 (102)
Q Consensus 8 ~~~~~v~vy~~~~Cp~C~~~~~~l~~~~--~~~~~~~id~~~~~~~~~~~l~~~~~~~~v--P~vfv-~g~~igg~~~l~ 82 (102)
+++...+|+..-.||.|...+.+|.+.. -.+.+..+...+. .+ .+...+..+.- -.+++ +|+..-|.+-+.
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g-~~---~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~ 80 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPG-QA---LLEAAGLDPEDVDSVLLVEAGQLLVGSDAAI 80 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchh-hh---HHhhcCCChhhhheeeEecCCceEeccHHHH
Confidence 3445577888899999999999996653 4466666653332 22 23333332222 23344 467777777654
Q ss_pred H
Q 034165 83 T 83 (102)
Q Consensus 83 ~ 83 (102)
+
T Consensus 81 ~ 81 (137)
T COG3011 81 R 81 (137)
T ss_pred H
Confidence 4
No 301
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=81.22 E-value=6 Score=25.11 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=17.7
Q ss_pred EEEEecCC-ChhHHHHHHHHHhcC---CCceEEEec
Q 034165 13 VVIFSKSS-CCMCHAIKRLFYDQG---VSPAIYELD 44 (102)
Q Consensus 13 v~vy~~~~-Cp~C~~~~~~l~~~~---~~~~~~~id 44 (102)
|+.|..+| ||.|..-..-|.+.. -.+.++-|+
T Consensus 48 vl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs 83 (167)
T PRK00522 48 VLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCIS 83 (167)
T ss_pred EEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEe
Confidence 44466666 999986555553321 134555554
No 302
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=80.49 E-value=9.5 Score=24.23 Aligned_cols=56 Identities=11% Similarity=0.075 Sum_probs=33.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCcc-EEEEC--CeEe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVP-AVFIG--GKFV 75 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP-~vfv~--g~~i 75 (102)
+.+++-+....-...++++++.+.+|..+..|.... +.+..+...+| +++++ |+.+
T Consensus 93 ~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~-------~~~~~~v~~~P~~~~id~~G~i~ 151 (173)
T TIGR00385 93 LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGK-------LGLDLGVYGAPETFLVDGNGVIL 151 (173)
T ss_pred CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCc-------hHHhcCCeeCCeEEEEcCCceEE
Confidence 444444433334556788999999888666664432 22223446789 56664 7644
No 303
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=80.34 E-value=3.1 Score=27.36 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=16.4
Q ss_pred CCCCCccEEEECCeEeeccHH
Q 034165 60 GCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 60 ~~~~~vP~vfv~g~~igg~~~ 80 (102)
.+-.++|+++|||+++-+.+.
T Consensus 163 ~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 163 LQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred cCCCCCCEEEECCEEEEcccc
Confidence 455899999999999765443
No 304
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=80.00 E-value=3.3 Score=26.33 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=20.4
Q ss_pred CCCCCccEEEECCe-EeeccHHHHHHH
Q 034165 60 GCNPSVPAVFIGGK-FVGSANTVMTLQ 85 (102)
Q Consensus 60 ~~~~~vP~vfv~g~-~igg~~~l~~~~ 85 (102)
.+..++|+++|||+ .+-|.+.+..+.
T Consensus 163 ~gv~GvP~~vv~g~~~~~G~~~~~~l~ 189 (193)
T PF01323_consen 163 LGVFGVPTFVVNGKYRFFGADRLDELE 189 (193)
T ss_dssp TTCSSSSEEEETTTEEEESCSSHHHHH
T ss_pred cCCcccCEEEECCEEEEECCCCHHHHH
Confidence 45589999999999 788887765543
No 305
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=79.33 E-value=6.7 Score=23.77 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=29.3
Q ss_pred CChhHHHHHHHHHhcC---CCceEEEeccccchHHHHHHHHhhCCCCCccEEEECC
Q 034165 20 SCCMCHAIKRLFYDQG---VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGG 72 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~---~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g 72 (102)
.||+|..+.-+|...- -..++..|+-.--..++-+.+.+. ..+.|++...+
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~--~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEA--NQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChh--ccCCCEEEeCC
Confidence 3999999999997652 233444444222223322233221 36899988764
No 306
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=79.32 E-value=4.1 Score=26.21 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=17.1
Q ss_pred CCCCCccEEEECCeE-eeccHHHHH
Q 034165 60 GCNPSVPAVFIGGKF-VGSANTVMT 83 (102)
Q Consensus 60 ~~~~~vP~vfv~g~~-igg~~~l~~ 83 (102)
.|..++|+++|||+. +.|......
T Consensus 171 ~gv~G~Pt~vv~g~~~~~G~~~~~~ 195 (201)
T cd03024 171 LGISGVPFFVFNGKYAVSGAQPPEV 195 (201)
T ss_pred CCCCcCCEEEECCeEeecCCCCHHH
Confidence 355789999999874 566665443
No 307
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=77.72 E-value=1.7 Score=27.81 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=16.1
Q ss_pred CEEEEecCCChhHHHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFY 32 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~ 32 (102)
+|.+|+.+.||+|-.+...|.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 478999999999975555543
No 308
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=77.47 E-value=2.2 Score=23.06 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=13.0
Q ss_pred EEECCeEeeccHHHHHH
Q 034165 68 VFIGGKFVGSANTVMTL 84 (102)
Q Consensus 68 vfv~g~~igg~~~l~~~ 84 (102)
||+||.++|=.++-.++
T Consensus 1 VFlNG~~iG~~~~p~~l 17 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEEL 17 (63)
T ss_dssp EEETTEEEEEESSHHHH
T ss_pred CEECCEEEEEEcCHHHH
Confidence 79999999977664443
No 309
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=77.37 E-value=20 Score=24.39 Aligned_cols=81 Identities=12% Similarity=0.223 Sum_probs=50.0
Q ss_pred HHHhhhcCC--CEEEEec-----CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEe
Q 034165 3 RVGRLASQK--AVVIFSK-----SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFV 75 (102)
Q Consensus 3 ~l~~~~~~~--~v~vy~~-----~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~i 75 (102)
.+.+.++.. +|.+.=. .+-+|-.++++.|.++|..+..+.+...+ .+++...+.+ .=.|+|+|-
T Consensus 23 ~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~-~~~Ie~~l~~------~d~IyVgGG-- 93 (224)
T COG3340 23 FIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPP-LAAIENKLMK------ADIIYVGGG-- 93 (224)
T ss_pred HHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCC-HHHHHHhhhh------ccEEEECCc--
Confidence 345545543 4555322 46789999999999999998888887443 4445444433 335666652
Q ss_pred eccHHHHHHHHcCchHH
Q 034165 76 GSANTVMTLQLNGSLKK 92 (102)
Q Consensus 76 gg~~~l~~~~~~g~L~~ 92 (102)
..|.-++.+.+.|-++-
T Consensus 94 NTF~LL~~lke~gld~i 110 (224)
T COG3340 94 NTFNLLQELKETGLDDI 110 (224)
T ss_pred hHHHHHHHHHHhCcHHH
Confidence 12444666766665543
No 310
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.30 E-value=1.5 Score=29.74 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=15.6
Q ss_pred CEEEEecCCChhHHHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFY 32 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~ 32 (102)
+|.+|+..-||+|---++-|+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ 27 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLE 27 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHH
Confidence 578899999999965444443
No 311
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=75.92 E-value=3 Score=26.53 Aligned_cols=29 Identities=7% Similarity=-0.010 Sum_probs=20.0
Q ss_pred EEEEecCCChhHHHHHHHH----HhcCCCceEE
Q 034165 13 VVIFSKSSCCMCHAIKRLF----YDQGVSPAIY 41 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l----~~~~~~~~~~ 41 (102)
|.+|+...||+|--....| ++++++++..
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~ 33 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYR 33 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEe
Confidence 4689999999997665555 4455554433
No 312
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=75.60 E-value=2.1 Score=27.58 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=14.8
Q ss_pred EEEEecCCChhHHHHHHHH
Q 034165 13 VVIFSKSSCCMCHAIKRLF 31 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l 31 (102)
|.+|+..-||+|--+..-|
T Consensus 1 I~~~~D~~cP~cyl~~~~l 19 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRL 19 (201)
T ss_pred CeEEecCcCccHHHHHHHH
Confidence 5689999999998555554
No 313
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=75.47 E-value=4 Score=21.73 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=28.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGK 73 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~ 73 (102)
+.+|+..+=-.+..++.+|++.||++...+-..... ... .+..+.+.|+|...
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~-------~g~-~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY-------AGE-PGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh-------hcc-cCccCceEEEECHH
Confidence 356777776788899999999999988876653332 111 23344588888764
No 314
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=75.26 E-value=3.9 Score=27.35 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=16.5
Q ss_pred CCCCCccEEEECCeEeeccHHHHH
Q 034165 60 GCNPSVPAVFIGGKFVGSANTVMT 83 (102)
Q Consensus 60 ~~~~~vP~vfv~g~~igg~~~l~~ 83 (102)
.+...+|++|++|+.+.|.-.+.+
T Consensus 211 ~gv~gTPt~~v~~~~~~g~~~~~~ 234 (244)
T COG1651 211 LGVNGTPTFIVNGKLVPGLPDLDE 234 (244)
T ss_pred cCCCcCCeEEECCeeecCCCCHHH
Confidence 344678888888887777665433
No 315
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=74.91 E-value=13 Score=26.98 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=8.3
Q ss_pred CccEEEECCeEee
Q 034165 64 SVPAVFIGGKFVG 76 (102)
Q Consensus 64 ~vP~vfv~g~~ig 76 (102)
.+|.+.+++....
T Consensus 343 GIP~L~iE~D~~~ 355 (377)
T TIGR03190 343 GIPTLFLEFDITN 355 (377)
T ss_pred CCCEEEEecCCCC
Confidence 3777777766553
No 316
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=74.85 E-value=3 Score=24.72 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=14.1
Q ss_pred CEEEEecCCChhHHHH
Q 034165 12 AVVIFSKSSCCMCHAI 27 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~ 27 (102)
+|.+|..+-||+|++.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5889999999999863
No 317
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=73.71 E-value=5.9 Score=23.04 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=18.1
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQG 35 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~ 35 (102)
.+.+|..+. ++|..++++|++..
T Consensus 22 ~l~~f~~~~-~~~~e~~~ll~e~a 44 (94)
T cd02974 22 ELVASLDDS-EKSAELLELLEEIA 44 (94)
T ss_pred EEEEEeCCC-cchHHHHHHHHHHH
Confidence 455677766 99999999997754
No 318
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=73.51 E-value=5.8 Score=24.83 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=16.2
Q ss_pred CCCCCccEEEECCeEeeccHH
Q 034165 60 GCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 60 ~~~~~vP~vfv~g~~igg~~~ 80 (102)
.+..++|+++|||+.+-+...
T Consensus 139 ~gi~gTPt~iInG~~~~~~~~ 159 (178)
T cd03019 139 YKITGVPAFVVNGKYVVNPSA 159 (178)
T ss_pred cCCCCCCeEEECCEEEEChhh
Confidence 455799999999998755443
No 319
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=72.98 E-value=24 Score=24.19 Aligned_cols=82 Identities=12% Similarity=-0.012 Sum_probs=51.1
Q ss_pred HHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhhCCCCCccEEEECCeEeeccHHH
Q 034165 3 RVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRLGCNPSVPAVFIGGKFVGSANTV 81 (102)
Q Consensus 3 ~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l 81 (102)
.+++.++..+. +|+.-..-.+..+.+++...|.+|-.+|.+..+-. ..+...+.........|.|-|-+. +...+
T Consensus 2 ~lk~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~---~~~~i 77 (249)
T TIGR03239 2 RFRQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN---EPVII 77 (249)
T ss_pred hHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC---CHHHH
Confidence 35666666653 34433344567888899999999999999876654 345555655544456788877542 34444
Q ss_pred HHHHHcC
Q 034165 82 MTLQLNG 88 (102)
Q Consensus 82 ~~~~~~g 88 (102)
....+.|
T Consensus 78 ~r~LD~G 84 (249)
T TIGR03239 78 KRLLDIG 84 (249)
T ss_pred HHHhcCC
Confidence 4444433
No 320
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=72.03 E-value=12 Score=22.16 Aligned_cols=40 Identities=25% Similarity=0.470 Sum_probs=28.1
Q ss_pred HHHhhhcCC--CEEEEecCCChhHH-HHHHHHHhcCCCceEEEecc
Q 034165 3 RVGRLASQK--AVVIFSKSSCCMCH-AIKRLFYDQGVSPAIYELDE 45 (102)
Q Consensus 3 ~l~~~~~~~--~v~vy~~~~Cp~C~-~~~~~l~~~~~~~~~~~id~ 45 (102)
++++++..- +..+|. |-.|. .++++|.+.+++.+.+.+..
T Consensus 4 ~~~Q~I~~I~~~f~~~q---C~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 4 EVRQQIGKIASRFKIFQ---CVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred HHHHHHHHhhcccCcee---hHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 445544432 234444 99995 67888999999999998876
No 321
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=71.88 E-value=6.6 Score=26.22 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=10.1
Q ss_pred CEEEEecCCChhHHHHHHHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLF 31 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l 31 (102)
.+++|....||+|.+.-.-+
T Consensus 87 ~v~~f~d~~Cp~C~~~~~~l 106 (244)
T COG1651 87 TVVEFFDYTCPYCKEAFPEL 106 (244)
T ss_pred eEEEEecCcCccHHHHHHHH
Confidence 35555555666664333333
No 322
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=71.63 E-value=21 Score=22.32 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=24.0
Q ss_pred HHHhhhcCC--CEEE--EecCCChhHHHHHHHHHhcC
Q 034165 3 RVGRLASQK--AVVI--FSKSSCCMCHAIKRLFYDQG 35 (102)
Q Consensus 3 ~l~~~~~~~--~v~v--y~~~~Cp~C~~~~~~l~~~~ 35 (102)
++.+++.+. ++++ |+..|-|.|.++-.+|.+-.
T Consensus 13 ~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~ 49 (142)
T KOG3414|consen 13 EVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIA 49 (142)
T ss_pred HHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHH
Confidence 455666554 3333 99999999999999996643
No 323
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=70.02 E-value=8.4 Score=24.52 Aligned_cols=47 Identities=9% Similarity=0.047 Sum_probs=32.4
Q ss_pred EEEEec--CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhh
Q 034165 13 VVIFSK--SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRL 59 (102)
Q Consensus 13 v~vy~~--~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~ 59 (102)
|.+.+. ++=|.+++++..|+++|++|+..-+.-+-....+.+.++.+
T Consensus 3 V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 3 VAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 444433 46789999999999999999887777676666666666554
No 324
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=69.51 E-value=13 Score=21.74 Aligned_cols=60 Identities=8% Similarity=-0.000 Sum_probs=38.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEecccc------chHHHHHHHHhhCCCCCccEEEECC
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDA------RGKEMEWALVRLGCNPSVPAVFIGG 72 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~------~~~~~~~~l~~~~~~~~vP~vfv~g 72 (102)
|.+++.++|.=..-++.+.+..+.++..++..... ....+...+........-..+|+++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe 66 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDE 66 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 57899999999999999999998776666554322 1122444555432211246777776
No 325
>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []. Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome
Probab=68.71 E-value=29 Score=22.57 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=52.0
Q ss_pred EEecCCChhHHHHHHHHHhcCCCceEEEeccccch----HH--HHHHHHhh---CCCCCcc---------------EEEE
Q 034165 15 IFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG----KE--MEWALVRL---GCNPSVP---------------AVFI 70 (102)
Q Consensus 15 vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~----~~--~~~~l~~~---~~~~~vP---------------~vfv 70 (102)
+++-+.-|+...+..+|-+ -++...++| .|++ .+ .++.|.+. +++.-+| .+++
T Consensus 7 ~~gl~~~pf~~e~~~~L~~-pl~~~DiEI--KPDGliYLPEikYRRiLN~AFGpGgWgL~Prg~~~v~~k~v~ReyaLic 83 (171)
T PF06420_consen 7 FHGLSSQPFSKEVADILLA-PLDPEDIEI--KPDGLIYLPEIKYRRILNKAFGPGGWGLVPRGETIVTGKIVTREYALIC 83 (171)
T ss_pred ccccCCCCCCHHHHHHHhC-CCChhceeE--CCCceEEchHHHHHHHHHHhcCCCceeeeecCCceecCceEEEEEEEEE
Confidence 4556778999999999866 334444444 3444 22 45566654 3443344 4566
Q ss_pred CCeEeec------------cHHHHHHHHcCchHHHHHhcCcc
Q 034165 71 GGKFVGS------------ANTVMTLQLNGSLKKLLKDAGAI 100 (102)
Q Consensus 71 ~g~~igg------------~~~l~~~~~~g~L~~~L~~~g~~ 100 (102)
.|++|.- ..+..+--+++.|...+|++|..
T Consensus 84 ~Gr~Vs~a~GEq~yf~~~~i~tA~EgcKSNALmRCCKDLGIa 125 (171)
T PF06420_consen 84 HGRLVSQARGEQDYFSPDSIPTATEGCKSNALMRCCKDLGIA 125 (171)
T ss_pred cCEEEEEeeccccccCCCCCchHHHHHHHHHHHHHHHHcCcc
Confidence 7887742 23345667788899999999863
No 326
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=68.44 E-value=17 Score=24.80 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=30.8
Q ss_pred HHHhhhcCCCEEEEecC-----CChhHHHHHHHHHhc------CCCceEEEeccccc
Q 034165 3 RVGRLASQKAVVIFSKS-----SCCMCHAIKRLFYDQ------GVSPAIYELDEDAR 48 (102)
Q Consensus 3 ~l~~~~~~~~v~vy~~~-----~Cp~C~~~~~~l~~~------~~~~~~~~id~~~~ 48 (102)
.|+++-++-.|.+|.++ .-++=..++.+|+++ .+.++++|-+.+++
T Consensus 19 ~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~ 75 (271)
T PF09822_consen 19 VLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPS 75 (271)
T ss_pred HHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChH
Confidence 34555455568888887 456777888999776 46677777654543
No 327
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=68.27 E-value=42 Score=24.19 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=42.6
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHH
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTV 81 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l 81 (102)
.++.+.+.+....-.++...|++.++++..+++..++....+.+.+........==.|-|+|--+.+.-..
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ 93 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKA 93 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHH
Confidence 56777776655566778888999999988777766666555555554432111112556666444444333
No 328
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=67.86 E-value=13 Score=26.45 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=32.9
Q ss_pred cCCChhHHHHHHHHHhcC---CCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHH
Q 034165 18 KSSCCMCHAIKRLFYDQG---VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVM 82 (102)
Q Consensus 18 ~~~Cp~C~~~~~~l~~~~---~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~ 82 (102)
.-+|..|.+++.+|+.+. ..+.++-||.+.+ .++....+.. ...+|.+-+.| .+|.+++..
T Consensus 82 ELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~--~L~~a~~~L~-~~~~p~l~v~~-l~gdy~~~l 145 (319)
T TIGR03439 82 ELGSGNLRKVGILLEALERQKKSVDYYALDVSRS--ELQRTLAELP-LGNFSHVRCAG-LLGTYDDGL 145 (319)
T ss_pred EECCCchHHHHHHHHHHHhcCCCceEEEEECCHH--HHHHHHHhhh-hccCCCeEEEE-EEecHHHHH
Confidence 456999999999987652 2344444443332 2333333333 13456665555 445555443
No 329
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=66.94 E-value=29 Score=21.82 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=35.7
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE---CCeEe
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI---GGKFV 75 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv---~g~~i 75 (102)
++.+++-+.-..=..+++++++.++.+..+.+.... .. .+.+..+..++|+.|+ +|+.+
T Consensus 65 ~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~-~~----~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 65 QLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEF-RR----ELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCceeecccchH-HH----HHHHHcCCCCCCEEEEECCCCcEE
Confidence 455544443334466889999999887665444221 11 3444455578998876 57766
No 330
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.75 E-value=16 Score=24.79 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=47.9
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHc--CchHHHH
Q 034165 19 SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLN--GSLKKLL 94 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~--g~L~~~L 94 (102)
+.-..|-.++.+|+-.+++|.++--+..+ .+ +....+|.+-+|...+.+|..|....+. ..|..+|
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~Nae-------fm---SP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~l 99 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANAE-------FM---SPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWL 99 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCcc-------cc---CCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhh
Confidence 56778999999999999999887554222 22 2223699999999999999998776543 3444554
No 331
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=66.52 E-value=21 Score=25.88 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=42.6
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCCceEEEecccc--chHHHHHHHHhhCCCCCccEEEE--CC-eEeeccHHHHHH
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDA--RGKEMEWALVRLGCNPSVPAVFI--GG-KFVGSANTVMTL 84 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~--~~~~~~~~l~~~~~~~~vP~vfv--~g-~~igg~~~l~~~ 84 (102)
..+.++|.++.+.+|. .+...-+|+....+.++.+- +..++++.+.+......+|.+++ -| ..-|.+|++.++
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i 216 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEI 216 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHH
Confidence 3568899999888886 34444456666777777533 33557777766533345774433 34 444777877664
No 332
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=65.27 E-value=12 Score=22.46 Aligned_cols=14 Identities=36% Similarity=0.914 Sum_probs=7.0
Q ss_pred CEEEEecC---CChhHH
Q 034165 12 AVVIFSKS---SCCMCH 25 (102)
Q Consensus 12 ~v~vy~~~---~Cp~C~ 25 (102)
.+++|+.. .|+||.
T Consensus 7 ~~~~~t~~Cnl~C~yC~ 23 (139)
T PF13353_consen 7 RVVLFTNGCNLRCKYCF 23 (139)
T ss_dssp EEEEEEC--SB--TT-T
T ss_pred EEEEEcCcccccCcCcC
Confidence 46777654 499994
No 333
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=65.13 E-value=4.6 Score=27.84 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=15.2
Q ss_pred EEEEecCCChhHHHHHH----HHHhcC
Q 034165 13 VVIFSKSSCCMCHAIKR----LFYDQG 35 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~----~l~~~~ 35 (102)
|.+.+..+||+|...+= .|.+.|
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcC
Confidence 55566689999985543 345655
No 334
>PLN02590 probable tyrosine decarboxylase
Probab=64.57 E-value=45 Score=25.65 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=45.3
Q ss_pred CCEEEEecCCChhHH-HHHHHHHhcCC---CceEEEeccc----cchHHHHHHHHhhCCCCCccEEEE---CCeEeeccH
Q 034165 11 KAVVIFSKSSCCMCH-AIKRLFYDQGV---SPAIYELDED----ARGKEMEWALVRLGCNPSVPAVFI---GGKFVGSAN 79 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~-~~~~~l~~~~~---~~~~~~id~~----~~~~~~~~~l~~~~~~~~vP~vfv---~g~~igg~~ 79 (102)
.++++|.+....+|. ++..+| |+ ....+.+|.. -+...+++.+.+.......|.+.+ +-...|.+|
T Consensus 228 ~~~vvy~S~~aH~Sv~KAa~il---Glg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiD 304 (539)
T PLN02590 228 PQLVVYGSDQTHSSFRKACLIG---GIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVD 304 (539)
T ss_pred CCEEEEecCCchHHHHHHHHHc---CCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccC
Confidence 468999999999984 444443 43 3566667632 244567777766433345776665 335568888
Q ss_pred HHHHHH
Q 034165 80 TVMTLQ 85 (102)
Q Consensus 80 ~l~~~~ 85 (102)
++.++.
T Consensus 305 pl~~Ia 310 (539)
T PLN02590 305 PLVPLG 310 (539)
T ss_pred CHHHHH
Confidence 887653
No 335
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=64.34 E-value=49 Score=23.49 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=16.8
Q ss_pred eccHHHHHHHHcCchHHHHHhcCccc
Q 034165 76 GSANTVMTLQLNGSLKKLLKDAGAIW 101 (102)
Q Consensus 76 gg~~~l~~~~~~g~L~~~L~~~g~~~ 101 (102)
|.-+-..+|.++|.|++++ +.|..|
T Consensus 115 GhG~i~~aL~~sG~L~~l~-~~G~~y 139 (300)
T cd00897 115 GHGDIFESLYNSGLLDTLL-AQGKEY 139 (300)
T ss_pred CCchHHHHHHHCCcHHHHH-hcCCEE
Confidence 3445567899999999855 445444
No 336
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=64.07 E-value=9.6 Score=22.46 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHhcC---------CCceEEEecc--ccchHHHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 22 CMCHAIKRLFYDQG---------VSPAIYELDE--DARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 22 p~C~~~~~~l~~~~---------~~~~~~~id~--~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
|.-...+.++...| ..|...+.+. .-...++-+.+.....--.-|.|..+++.+-||++
T Consensus 36 ~s~~eL~~~l~~~g~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikRPIi~~~~~~~iGf~~ 105 (105)
T cd03035 36 LDAATLERWLAKVGWETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIKRPVLETGGKVLVGFSE 105 (105)
T ss_pred CCHHHHHHHHHHhChHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeeecceEEeCCEEEEeeCC
Confidence 34456666666555 4455554441 11123344455554443456999989888888863
No 337
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=63.94 E-value=29 Score=20.79 Aligned_cols=61 Identities=5% Similarity=0.156 Sum_probs=30.5
Q ss_pred hHHHhhhcCCC-EEEE-ecC----CChhHH------HHHHHHHhcCCCceE--EEeccccchHHHHHHHHhhCCCCCccE
Q 034165 2 DRVGRLASQKA-VVIF-SKS----SCCMCH------AIKRLFYDQGVSPAI--YELDEDARGKEMEWALVRLGCNPSVPA 67 (102)
Q Consensus 2 ~~l~~~~~~~~-v~vy-~~~----~Cp~C~------~~~~~l~~~~~~~~~--~~id~~~~~~~~~~~l~~~~~~~~vP~ 67 (102)
++++.+-+..| +.|| .++ ||.+|+ .+.+++.+ .|-. .|+.. +++.+ +...-+..++|.
T Consensus 8 eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~-~eg~~----la~~l~~~~~P~ 79 (116)
T cd02991 8 QALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAK-PEGYR----VSQALRERTYPF 79 (116)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCC-hHHHH----HHHHhCCCCCCE
Confidence 45556655555 4444 344 577885 45555543 2333 34442 22322 333334478998
Q ss_pred EEE
Q 034165 68 VFI 70 (102)
Q Consensus 68 vfv 70 (102)
+.+
T Consensus 80 ~~~ 82 (116)
T cd02991 80 LAM 82 (116)
T ss_pred EEE
Confidence 744
No 338
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=61.80 E-value=28 Score=21.37 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCCceEEEec
Q 034165 26 AIKRLFYDQGVSPAIYELD 44 (102)
Q Consensus 26 ~~~~~l~~~~~~~~~~~id 44 (102)
...++|++++++|..+.+.
T Consensus 68 ~t~~wL~k~~ipYd~l~~~ 86 (126)
T TIGR01689 68 IIILWLNQHNVPYDEIYVG 86 (126)
T ss_pred HHHHHHHHcCCCCceEEeC
Confidence 6778888888888776655
No 339
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=61.58 E-value=7 Score=23.29 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=13.3
Q ss_pred CCccEEEECCeEeecc
Q 034165 63 PSVPAVFIGGKFVGSA 78 (102)
Q Consensus 63 ~~vP~vfv~g~~igg~ 78 (102)
-.+|.+|.||+.||=-
T Consensus 80 ECTplvF~n~~LvgWG 95 (102)
T PF11399_consen 80 ECTPLVFKNGKLVGWG 95 (102)
T ss_pred ceEEEEEECCEEEEEc
Confidence 4689999999999743
No 340
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=61.58 E-value=50 Score=22.72 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=45.8
Q ss_pred hHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhhCCCCCccEEEECC
Q 034165 2 DRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRLGCNPSVPAVFIGG 72 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~~~~~~vP~vfv~g 72 (102)
+.+++.++..+. +|+.-..-.+..+.+++...|.+|-.+|.+..+-. ..+...+.........|.|-|-+
T Consensus 8 n~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 8 NKFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 356777777663 33322223456888899999999999999876654 34555555554445677777754
No 341
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=60.31 E-value=32 Score=19.97 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=30.3
Q ss_pred hHHHhhhcCC-CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhh
Q 034165 2 DRVGRLASQK-AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRL 59 (102)
Q Consensus 2 ~~l~~~~~~~-~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~ 59 (102)
+.++.+-+.. ++.+.+......-....+.|++.|++...-+|- .......+++++.
T Consensus 21 e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~--ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 21 EALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEII--TSGMAAAEYLKEH 77 (101)
T ss_dssp HHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEE--EHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEE--ChHHHHHHHHHhc
Confidence 3556666665 455555555555577788889999985443222 2223344566664
No 342
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=60.28 E-value=18 Score=23.00 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=24.0
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHhcCCC
Q 034165 9 SQKAVVIFSKSSCCMCHAIKRLFYDQGVS 37 (102)
Q Consensus 9 ~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~ 37 (102)
+..+|++|-.++|+.+..+...|+..|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 34579999999998888899999888864
No 343
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=59.13 E-value=15 Score=20.08 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=18.5
Q ss_pred CCCCCccEEEECCeEeeccHH--HHHHHH
Q 034165 60 GCNPSVPAVFIGGKFVGSANT--VMTLQL 86 (102)
Q Consensus 60 ~~~~~vP~vfv~g~~igg~~~--l~~~~~ 86 (102)
+....-|.+.|||+.++.... +.++.+
T Consensus 42 G~C~~gP~v~V~~~~~~~~t~~~i~~~~~ 70 (72)
T cd03082 42 GRCERAPAALVGQRPVDGATPAAVAAAVE 70 (72)
T ss_pred CccCCCCeEEECCEEeCCcCHHHHHHHHh
Confidence 344678999999999876643 444443
No 344
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=58.17 E-value=53 Score=25.40 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=49.0
Q ss_pred EEEEec--CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhh----------------------CCCCCccEE
Q 034165 13 VVIFSK--SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRL----------------------GCNPSVPAV 68 (102)
Q Consensus 13 v~vy~~--~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~----------------------~~~~~vP~v 68 (102)
|.+... ++=|.+.++...|+++|++|+..-+.-+-....+.+..+.. .+..+.|+|
T Consensus 413 v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi 492 (577)
T PLN02948 413 VGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVI 492 (577)
T ss_pred EEEEECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEE
Confidence 544443 56789999999999999999977776665554444333221 222567777
Q ss_pred EE--CCeEeeccHHHHHHHHc
Q 034165 69 FI--GGKFVGSANTVMTLQLN 87 (102)
Q Consensus 69 fv--~g~~igg~~~l~~~~~~ 87 (102)
=| ++...+|.|.|..+.+.
T Consensus 493 ~vp~~~~~~~g~~~l~s~~~~ 513 (577)
T PLN02948 493 GVPVKTSHLDGLDSLLSIVQM 513 (577)
T ss_pred EcCCCCCCCCcHHHHHHHhcC
Confidence 44 33356788877766655
No 345
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=56.87 E-value=26 Score=21.13 Aligned_cols=61 Identities=16% Similarity=0.312 Sum_probs=33.8
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCc-eEEEeccccchHHHHHHHHhh-CCCCCccEEEECCe
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVSP-AIYELDEDARGKEMEWALVRL-GCNPSVPAVFIGGK 73 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~~-~~~~id~~~~~~~~~~~l~~~-~~~~~vP~vfv~g~ 73 (102)
.+|++.-+-.|+|..+++. .++.|... -++|.+..+....+. ..... ....++|.++|...
T Consensus 35 g~I~Lv~RG~C~F~~K~~~-Aq~aGA~avII~n~~~~~~~~~~~-m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 35 GNIALIERGGCSFLTKAIN-AQKAGALAVIITDVNNDSDEYYVE-MIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred CeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCCccccceE-ecCCCCCCCceEEEEEecHH
Confidence 4688888889999999887 55556554 344443221111000 00010 12247899998753
No 346
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=56.58 E-value=33 Score=20.39 Aligned_cols=29 Identities=17% Similarity=-0.039 Sum_probs=20.2
Q ss_pred HHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 52 MEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 52 ~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
+-+.+.....--.-|.|..+++.+-|++.
T Consensus 79 ~i~~l~~~P~LikRPIi~~~~~~~vG~~~ 107 (114)
T TIGR00014 79 LLDAMVAHPILLERPIVVAGDGARIGRPP 107 (114)
T ss_pred HHHHHHHCcCcccCCeEEECCEEEEcCCH
Confidence 44455554444567999999988888875
No 347
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=56.12 E-value=37 Score=23.47 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=49.3
Q ss_pred hcCCCEEEEecCCChhHHHHHHHHHhcCCCceEE--------EeccccchHHHHHHHHhhCCCC-Ccc---EEEECCeEe
Q 034165 8 ASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIY--------ELDEDARGKEMEWALVRLGCNP-SVP---AVFIGGKFV 75 (102)
Q Consensus 8 ~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~--------~id~~~~~~~~~~~l~~~~~~~-~vP---~vfv~g~~i 75 (102)
+..+++.+|+.-+=..-..+...|++.|++|+.. .|+... ..+.+..+...+-.+ +.. .+|-.+.++
T Consensus 16 l~gC~~~LysgL~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~~-~~~Ar~~La~~GLP~~g~~~~~~lFd~~~l~ 94 (249)
T PRK15348 16 LTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQ-FINAVELLRLNGYPHRQFTTADKMFPANQLV 94 (249)
T ss_pred HhcCChHHHcCCCHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecHHH-HHHHHHHHHHcCCCCCCCccHHHhCCccccc
Confidence 3455677777666667788999999999999652 222211 122333444433211 111 145444444
Q ss_pred eccHHHH---HHHHcCchHHHHHhc
Q 034165 76 GSANTVM---TLQLNGSLKKLLKDA 97 (102)
Q Consensus 76 gg~~~l~---~~~~~g~L~~~L~~~ 97 (102)
-+..+.. .+..+|+|.+.|+..
T Consensus 95 ~t~te~~qki~y~regELarTI~~i 119 (249)
T PRK15348 95 VSPQEEQQKINFLKEQRIEGMLSQM 119 (249)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHhC
Confidence 3334432 244579999888543
No 348
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=55.99 E-value=34 Score=20.07 Aligned_cols=54 Identities=13% Similarity=-0.037 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcCCCceEEEecc---------------ccchHHHHHHHHhhCCCCCccEEEECCeEee
Q 034165 23 MCHAIKRLFYDQGVSPAIYELDE---------------DARGKEMEWALVRLGCNPSVPAVFIGGKFVG 76 (102)
Q Consensus 23 ~C~~~~~~l~~~~~~~~~~~id~---------------~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ig 76 (102)
...++++.+++.|++++..-... .|.-+...+.+++......+|...|+.+..|
T Consensus 16 la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHh
Confidence 45788889999998875432211 2333444445666555567999999976555
No 349
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=55.44 E-value=47 Score=21.48 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=30.8
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCC------------ceEEEeccccchHHHHHHHHhhCCCCCccEEEECCe
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVS------------PAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGK 73 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~------------~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~ 73 (102)
..+.+-..|.++.=.-|+++|+.+++. |...+|-.......+++ +.+.++.+.-=.+|.|++
T Consensus 60 ~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~-i~~~tgI~y~eMlFFDDe 133 (169)
T PF12689_consen 60 RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRR-IHRKTGIPYEEMLFFDDE 133 (169)
T ss_dssp CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHH-HHHHH---GGGEEEEES-
T ss_pred CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHH-HHHhcCCChhHEEEecCc
Confidence 445554444444448899999988877 44566665544444553 333444344446777765
No 350
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=54.92 E-value=51 Score=24.70 Aligned_cols=70 Identities=4% Similarity=-0.002 Sum_probs=46.4
Q ss_pred HHhhhcCC---CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhh---CCCCCccEEEECCeE
Q 034165 4 VGRLASQK---AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRL---GCNPSVPAVFIGGKF 74 (102)
Q Consensus 4 l~~~~~~~---~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~---~~~~~vP~vfv~g~~ 74 (102)
++++++.. .+.+|+-|+|.-..-++-+-...+.+|..++-.. ..-+++++.+.+. .+...-+.+|||..|
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvkdlr~i~e~a~~~~~~gr~tiLflDEIH 114 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVKDLREIIEEARKNRLLGRRTILFLDEIH 114 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHHHHHHHHHHHHHHHhcCCceEEEEehhh
Confidence 45666654 4788999999999999988888888887776542 2234455555443 222235788887543
No 351
>PRK07758 hypothetical protein; Provisional
Probab=54.79 E-value=12 Score=22.07 Aligned_cols=13 Identities=23% Similarity=0.554 Sum_probs=9.0
Q ss_pred EEEEecCCChhHH
Q 034165 13 VVIFSKSSCCMCH 25 (102)
Q Consensus 13 v~vy~~~~Cp~C~ 25 (102)
-.+|-+++||.|.
T Consensus 14 ~~~~~~~~~~~~~ 26 (95)
T PRK07758 14 HEYYKSSDCPTCP 26 (95)
T ss_pred cceeccCCCCCCc
Confidence 4577777777775
No 352
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.61 E-value=18 Score=20.26 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHhcCCCceEE
Q 034165 21 CCMCHAIKRLFYDQGVSPAIY 41 (102)
Q Consensus 21 Cp~C~~~~~~l~~~~~~~~~~ 41 (102)
=.||+++..+|++++++|+-+
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeee
Confidence 469999999999999998765
No 353
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=54.36 E-value=38 Score=20.30 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=36.6
Q ss_pred CEEEEecCCChhH----HHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC
Q 034165 12 AVVIFSKSSCCMC----HAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG 71 (102)
Q Consensus 12 ~v~vy~~~~Cp~C----~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~ 71 (102)
.+.++.-..-|.. ...++..++.|+.+..+.+..+....++.+.+.+.+..+++=-|.+-
T Consensus 31 ~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq 94 (117)
T PF00763_consen 31 KLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILVQ 94 (117)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEc
Confidence 3444443444544 44456668899999999998777777888888887665666555553
No 354
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=53.65 E-value=71 Score=21.96 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=38.9
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCe
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGK 73 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~ 73 (102)
.+.+|+.++|.-..-++.+.++.+.++.............+...+.... .-..+|+|.-
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~vl~iDEi 90 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLE---EGDVLFIDEI 90 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcc---cCCEEEEehH
Confidence 4899999999999999999999888766654432222233333443332 2457788763
No 355
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=53.32 E-value=18 Score=27.23 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=18.2
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQG 35 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~ 35 (102)
.+.+|.. .|++|..++.+|++..
T Consensus 22 ~~~~~~~-~~~~~~~~~~~~~~~~ 44 (517)
T PRK15317 22 ELVASLD-DSEKSAELKELLEEIA 44 (517)
T ss_pred EEEEEeC-CCchHHHHHHHHHHHH
Confidence 4555665 7999999999998764
No 356
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=52.47 E-value=55 Score=20.35 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 25 HAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
.++.++|++.+++|+.++........+..+.+.. .....+-.+++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~~-~~~~~~Ktlv~ 46 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPVFTVEEADEVLGE-LPGAHTKNLFL 46 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCcCCHHHHHHhhcc-CCCceEEEEEE
Confidence 3578899999999999887654444443333322 22234555554
No 357
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=52.04 E-value=47 Score=19.84 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=32.0
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHH
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKE 51 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~ 51 (102)
+|.+++.++|.=..-++.+.+..+.++..+.+........
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccccc
Confidence 4789999999999999999999988888888776555443
No 358
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=51.68 E-value=46 Score=19.21 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHhcCCCceEEEecc---------------ccchHHHHHHHHhhCCCCCccEEEECCeEeecc
Q 034165 22 CMCHAIKRLFYDQGVSPAIYELDE---------------DARGKEMEWALVRLGCNPSVPAVFIGGKFVGSA 78 (102)
Q Consensus 22 p~C~~~~~~l~~~~~~~~~~~id~---------------~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~ 78 (102)
-...++++++++.|++++..-.+. .|.-+...+.+++......+|...++....|-.
T Consensus 18 ~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~~~Y~~m 89 (95)
T TIGR00853 18 LLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVINGAQYGKL 89 (95)
T ss_pred HHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeChhhcccC
Confidence 456788899999999875432221 122233344555554445688888887655543
No 359
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=51.66 E-value=73 Score=23.74 Aligned_cols=77 Identities=23% Similarity=0.282 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCC---------CCCccEEEECCeEe-----------------ec
Q 034165 24 CHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGC---------NPSVPAVFIGGKFV-----------------GS 77 (102)
Q Consensus 24 C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~---------~~~vP~vfv~g~~i-----------------gg 77 (102)
+.+++.+=+.++.+...+--.+.....+.++.++++.+ +..+|.+..+|... |-
T Consensus 92 ~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~Gh 171 (420)
T PF01704_consen 92 VEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGH 171 (420)
T ss_dssp HHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TG
T ss_pred HHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCC
Confidence 44444444566666554444433444445556666433 24567776665311 33
Q ss_pred cHHHHHHHHcCchHHHHHhcCccc
Q 034165 78 ANTVMTLQLNGSLKKLLKDAGAIW 101 (102)
Q Consensus 78 ~~~l~~~~~~g~L~~~L~~~g~~~ 101 (102)
-+-..+|..+|.|++++++ |..|
T Consensus 172 Gdi~~aL~~sG~Ld~l~~~-G~ey 194 (420)
T PF01704_consen 172 GDIYRALYNSGLLDKLLAR-GIEY 194 (420)
T ss_dssp GGHHHHHHHTTHHHHHHHT-T--E
T ss_pred cceehhhhccChHHHHHHc-CCeE
Confidence 4456788999999886644 6544
No 360
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=50.87 E-value=64 Score=20.67 Aligned_cols=40 Identities=18% Similarity=0.058 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccE-EEEC
Q 034165 25 HAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPA-VFIG 71 (102)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~-vfv~ 71 (102)
..+++++++.+.+|..+-.|.... +....+...+|. +++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~D~~~~-------~~~~~gv~~~P~t~vid 150 (185)
T PRK15412 110 QKAISWLKELGNPYALSLFDGDGM-------LGLDLGVYGAPETFLID 150 (185)
T ss_pred HHHHHHHHHcCCCCceEEEcCCcc-------HHHhcCCCcCCeEEEEC
Confidence 568889999999988654553321 122234577894 5554
No 361
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=50.85 E-value=46 Score=23.80 Aligned_cols=75 Identities=13% Similarity=0.391 Sum_probs=46.1
Q ss_pred CEEEEecC---CChhHH----------------HHHHHHHhcCCCceEE---Eeccccch--HHHHHHHHhhCCCCCccE
Q 034165 12 AVVIFSKS---SCCMCH----------------AIKRLFYDQGVSPAIY---ELDEDARG--KEMEWALVRLGCNPSVPA 67 (102)
Q Consensus 12 ~v~vy~~~---~Cp~C~----------------~~~~~l~~~~~~~~~~---~id~~~~~--~~~~~~l~~~~~~~~vP~ 67 (102)
.|++.+.+ +|.||. .....+++.|+.|.++ |-|..+++ ..+.+.++++. ..-|-
T Consensus 113 TIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK--~k~p~ 190 (360)
T KOG2672|consen 113 TIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIK--EKAPE 190 (360)
T ss_pred EEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHH--hhCcc
Confidence 46677664 588995 5667788999998764 44444443 22555555543 23567
Q ss_pred EEEC---CeEeeccHHHHHHHHcC
Q 034165 68 VFIG---GKFVGSANTVMTLQLNG 88 (102)
Q Consensus 68 vfv~---g~~igg~~~l~~~~~~g 88 (102)
++|. ..|-|..+-+..+.++|
T Consensus 191 ilvE~L~pDF~Gd~~~Ve~va~SG 214 (360)
T KOG2672|consen 191 ILVECLTPDFRGDLKAVEKVAKSG 214 (360)
T ss_pred cchhhcCccccCchHHHHHHHhcC
Confidence 7764 45666666665555555
No 362
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=50.26 E-value=32 Score=23.29 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=22.0
Q ss_pred EecCCChhHHHHHHHHHhcCCC--ceEEEecc
Q 034165 16 FSKSSCCMCHAIKRLFYDQGVS--PAIYELDE 45 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~~~--~~~~~id~ 45 (102)
+-+..||.++.+|..|++.++. +..+.-.+
T Consensus 151 ~~t~~~pla~~~R~~Lrk~~~~~~~~~v~S~E 182 (231)
T cd00755 151 SKTSGDPLARKVRKRLRKRGIFFGVPVVYSTE 182 (231)
T ss_pred eccccCcHHHHHHHHHHHcCCCCCeEEEeCCC
Confidence 4446799999999999998885 44444443
No 363
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=50.10 E-value=36 Score=20.08 Aligned_cols=30 Identities=20% Similarity=-0.026 Sum_probs=20.8
Q ss_pred HHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 51 EMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 51 ~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
++.+.+.+...--.-|.|+.+++.+-||++
T Consensus 79 e~~~~l~~~p~LikRPIi~~~~~~~vGf~~ 108 (111)
T cd03036 79 EALELLSSDGMLIKRPFVVDDDKVLVGFKE 108 (111)
T ss_pred HHHHHHHhCcCeeeCCEEEeCCEEEEccCh
Confidence 344455554443467999999999988885
No 364
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=49.95 E-value=57 Score=19.80 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=17.6
Q ss_pred CCCCCccEEEECCeEe-eccHHHHH
Q 034165 60 GCNPSVPAVFIGGKFV-GSANTVMT 83 (102)
Q Consensus 60 ~~~~~vP~vfv~g~~i-gg~~~l~~ 83 (102)
.|-..+|.|++|++.| -|-.++.+
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~DV~~ 104 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETDVAR 104 (113)
T ss_pred cCCccCCEEEEcCCeEEecCccHHH
Confidence 5568999999999877 55555443
No 365
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.89 E-value=10 Score=26.68 Aligned_cols=12 Identities=25% Similarity=0.586 Sum_probs=8.6
Q ss_pred cCCChhHHHHHH
Q 034165 18 KSSCCMCHAIKR 29 (102)
Q Consensus 18 ~~~Cp~C~~~~~ 29 (102)
+++||||++-..
T Consensus 270 kqtCPYCKekVd 281 (328)
T KOG1734|consen 270 KQTCPYCKEKVD 281 (328)
T ss_pred CCCCchHHHHhh
Confidence 378999986433
No 366
>PLN02880 tyrosine decarboxylase
Probab=49.89 E-value=79 Score=23.89 Aligned_cols=73 Identities=8% Similarity=0.075 Sum_probs=43.2
Q ss_pred CCEEEEecCCChhHH-HHHHHHHhcCC-CceEEEeccc----cchHHHHHHHHhhCCCCCccEEEEC--C-eEeeccHHH
Q 034165 11 KAVVIFSKSSCCMCH-AIKRLFYDQGV-SPAIYELDED----ARGKEMEWALVRLGCNPSVPAVFIG--G-KFVGSANTV 81 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~-~~~~~l~~~~~-~~~~~~id~~----~~~~~~~~~l~~~~~~~~vP~vfv~--g-~~igg~~~l 81 (102)
.+.++|.+....+|. ++..+|- .|. ....+.+|.. -+...+++.+.+.......|.+.|. | ...|.+|++
T Consensus 180 ~~~vv~~S~~aH~Sv~Kaa~~lG-lg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl 258 (490)
T PLN02880 180 EKLVVYASDQTHSALQKACQIAG-IHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPL 258 (490)
T ss_pred CCeEEEEcCCchHHHHHHHHHcC-CCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcH
Confidence 468899988888884 4555541 121 2455666532 2445677777654333456776663 3 455777877
Q ss_pred HHH
Q 034165 82 MTL 84 (102)
Q Consensus 82 ~~~ 84 (102)
.++
T Consensus 259 ~eI 261 (490)
T PLN02880 259 LEL 261 (490)
T ss_pred HHH
Confidence 664
No 367
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=49.58 E-value=16 Score=18.39 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=12.8
Q ss_pred CCccEEEECCeEeecc
Q 034165 63 PSVPAVFIGGKFVGSA 78 (102)
Q Consensus 63 ~~vP~vfv~g~~igg~ 78 (102)
..++.|||||+.+-.-
T Consensus 18 ~GI~~V~VNG~~vv~~ 33 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVED 33 (48)
T ss_dssp BSEEEEEETTEEEECT
T ss_pred CCEEEEEECCEEEEEC
Confidence 4689999999988543
No 368
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=49.50 E-value=99 Score=22.41 Aligned_cols=79 Identities=8% Similarity=-0.116 Sum_probs=48.9
Q ss_pred HHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEE----------eccccch-HHHHHHHHhhCCCCCccEEEEC
Q 034165 3 RVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYE----------LDEDARG-KEMEWALVRLGCNPSVPAVFIG 71 (102)
Q Consensus 3 ~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~----------id~~~~~-~~~~~~l~~~~~~~~vP~vfv~ 71 (102)
++.++++..=+.+|+-+.|..-..+..+...+.+++-... +...|+. .++.+.++ ..+|+.+=.++-+
T Consensus 55 ~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~-~~~Wr~~~~iYd~ 133 (372)
T cd06387 55 AFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLA-HYKWEKFVYLYDT 133 (372)
T ss_pred HHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHH-hcCCCEEEEEecC
Confidence 4556777777888998888888888888888888775421 2222332 23443443 3567888777866
Q ss_pred CeEeeccHHHH
Q 034165 72 GKFVGSANTVM 82 (102)
Q Consensus 72 g~~igg~~~l~ 82 (102)
+.-.+...++.
T Consensus 134 d~gl~~Lq~L~ 144 (372)
T cd06387 134 ERGFSILQAIM 144 (372)
T ss_pred chhHHHHHHHH
Confidence 55444444443
No 369
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=49.46 E-value=68 Score=23.92 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=40.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEecccc------chHHHHHHHHhhCC---CCCccE-EEECC
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDA------RGKEMEWALVRLGC---NPSVPA-VFIGG 72 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~------~~~~~~~~l~~~~~---~~~vP~-vfv~g 72 (102)
+-+|+-|+|.-...++.+.++.|+++..++..+-. ..+.+++.+..... ...-|+ +|||.
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 67789999999999999999999998777654321 12335655554421 123454 57774
No 370
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.14 E-value=68 Score=23.15 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=30.0
Q ss_pred EEEEec----CCChhHHHHHHHHHhc---------CC---C--ceEEEeccccchHHHHHHHHhhCCCCCccEEEEC
Q 034165 13 VVIFSK----SSCCMCHAIKRLFYDQ---------GV---S--PAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG 71 (102)
Q Consensus 13 v~vy~~----~~Cp~C~~~~~~l~~~---------~~---~--~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~ 71 (102)
|++|+. ..|+-|..+.+-++-. +- + |-.+|.++.++ .++.... .++|.+++=
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~------~Fq~l~l-n~~P~l~~f 133 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ------VFQQLNL-NNVPHLVLF 133 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH------HHHHhcc-cCCCeEEEe
Confidence 777776 3799998777655211 11 1 33455554332 3444443 678998874
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=48.59 E-value=45 Score=22.41 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcCchHHHHHhcCc
Q 034165 25 HAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLKDAGA 99 (102)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g~L~~~L~~~g~ 99 (102)
..+..||++..|+...+|=....-.--+++.++-.-+-.+-|.+..-+++-||.|--....--.-|..+..+.|+
T Consensus 129 ~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~l 203 (258)
T COG4107 129 AEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL 203 (258)
T ss_pred HHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCc
Confidence 467778888766554443221111122555665544446788888888899999986554433344555555554
No 372
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=48.52 E-value=29 Score=22.29 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC
Q 034165 25 HAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG 71 (102)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~ 71 (102)
....++|+++||++..++=.....-++-+.....+.| ...-.+|+.
T Consensus 6 ~el~~lL~eLgI~~~tveHppv~tveEs~~~~~eipg-ghtKnLfLk 51 (164)
T COG3760 6 AELFALLDELGIDHTTVEHPPVFTVEESQALRDEIPG-GHTKNLFLK 51 (164)
T ss_pred HHHHHHHHHhCCCcccccCCCceehHHHHHHHhhcCC-CccceeEee
Confidence 4567889999999877643322222333333334433 223445543
No 373
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=48.52 E-value=97 Score=22.04 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=32.0
Q ss_pred CCEEEEecCCC--hhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhh
Q 034165 11 KAVVIFSKSSC--CMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRL 59 (102)
Q Consensus 11 ~~v~vy~~~~C--p~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~ 59 (102)
.++.+.+.+.. +...++...|++.++.+.+.++..++....+.+.....
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~ 73 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIA 73 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHH
Confidence 45655554322 67778888899989987766677666665555444443
No 374
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=48.51 E-value=1e+02 Score=22.24 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=42.2
Q ss_pred CCEEEEecCC---ChhHHHHHHHHHhcCCCceEE-EeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHH
Q 034165 11 KAVVIFSKSS---CCMCHAIKRLFYDQGVSPAIY-ELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTV 81 (102)
Q Consensus 11 ~~v~vy~~~~---Cp~C~~~~~~l~~~~~~~~~~-~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l 81 (102)
.++.+.+.+. -+...+++..|++.++++..+ ++..++....+.+.+........=-.|-|+|--+.+....
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ 101 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKL 101 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHH
Confidence 4566666553 456788999999999887654 4556666665555555442222224556666444444433
No 375
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=48.48 E-value=61 Score=21.22 Aligned_cols=47 Identities=11% Similarity=0.237 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCceEEEeccccchHHHHHHHHhh-----CCCCCccEEEEC
Q 034165 25 HAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRL-----GCNPSVPAVFIG 71 (102)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~-----~~~~~vP~vfv~ 71 (102)
..+..++.+...++-.+++..+...+++.+.+..+ .+.+.+|.++|.
T Consensus 49 ~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 49 PEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred HHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 46778888887788888887776555544444432 667899999997
No 376
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=48.42 E-value=60 Score=19.59 Aligned_cols=43 Identities=7% Similarity=0.200 Sum_probs=30.5
Q ss_pred CCEEEEecCCChhHHHHHHHH---HhcCCCceEEEeccccchHHHH
Q 034165 11 KAVVIFSKSSCCMCHAIKRLF---YDQGVSPAIYELDEDARGKEME 53 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l---~~~~~~~~~~~id~~~~~~~~~ 53 (102)
+.|.+|..++|..-...++++ ++-|++|..+.+....+...+.
T Consensus 3 Pai~i~~~~~~~~~~~lrev~aGIEEEGip~~~~~~~~~~d~~~lA 48 (112)
T PF02288_consen 3 PAIGIYVSKTIEGSDVLREVLAGIEEEGIPYRVVRVSDTSDVAFLA 48 (112)
T ss_dssp TTECCCEECTTTCHHHHHHHHHHHHCTT-EEEEEEECSSSSHHHHH
T ss_pred CEEEEEecCCCcchhHHHHHHhHhcccCCCeEEEeecCcccHHHHH
Confidence 457788888888766677776 7889999997776666655433
No 377
>PRK04195 replication factor C large subunit; Provisional
Probab=47.97 E-value=1.2e+02 Score=22.80 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=33.7
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHh
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVR 58 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~ 58 (102)
...+.+||.++|.=...+..+.++.+.++..++.........++..+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~ 87 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGE 87 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHH
Confidence 3458899999999999999999999876666655433222334444433
No 378
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=47.81 E-value=48 Score=18.28 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=36.4
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
..++.+.+-+....=...++.+++.+.+...+..+... ...+.+..+...+|.+++
T Consensus 33 ~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~i~~iP~~~l 88 (95)
T PF13905_consen 33 KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-----NSELLKKYGINGIPTLVL 88 (95)
T ss_dssp TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-----HHHHHHHTT-TSSSEEEE
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-----HHHHHHHCCCCcCCEEEE
Confidence 34566655555577788999999998877777665433 124444455688999876
No 379
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=47.38 E-value=22 Score=26.28 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=14.5
Q ss_pred HHHHHHHHhhCCC--CCccEEEECCeE
Q 034165 50 KEMEWALVRLGCN--PSVPAVFIGGKF 74 (102)
Q Consensus 50 ~~~~~~l~~~~~~--~~vP~vfv~g~~ 74 (102)
+.+....+.++|. ..+|+|||+|.+
T Consensus 59 ~~m~~F~~YYsge~~APVlTIFIGGNH 85 (456)
T KOG2863|consen 59 RRMGDFYKYYSGEIKAPVLTIFIGGNH 85 (456)
T ss_pred HHHHHHHHHhCCcccCceeEEEecCch
Confidence 3344455555443 367788888754
No 380
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=47.17 E-value=25 Score=26.43 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=17.9
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQG 35 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~ 35 (102)
.+.+|.. .|++|..++.+|++..
T Consensus 22 ~~~~~~~-~~~~~~~~~~~~~~~~ 44 (515)
T TIGR03140 22 TLVLSAG-SHEKSKELLELLDEIA 44 (515)
T ss_pred EEEEEeC-CCchhHHHHHHHHHHH
Confidence 3555665 7999999999997763
No 381
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=46.69 E-value=1.1e+02 Score=22.03 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=41.9
Q ss_pred CCEEEEecC---CChhHHHHHHHHHhcCCCceEE-EeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHH
Q 034165 11 KAVVIFSKS---SCCMCHAIKRLFYDQGVSPAIY-ELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTV 81 (102)
Q Consensus 11 ~~v~vy~~~---~Cp~C~~~~~~l~~~~~~~~~~-~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l 81 (102)
.++.+.+.+ ..+...+++..|++.|+++..+ .+..++....+.+.+........=-.|-|+|--+-+.-..
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ 99 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKA 99 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHH
Confidence 356665543 3567889999999999988766 3666666666665555442211112445676444444433
No 382
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=46.41 E-value=57 Score=21.68 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=20.7
Q ss_pred HHHHHHhhCCCCCcc-EEEECCeEeeccHHHHHHHH
Q 034165 52 MEWALVRLGCNPSVP-AVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 52 ~~~~l~~~~~~~~vP-~vfv~g~~igg~~~l~~~~~ 86 (102)
++..+...-+..++| ..||+++-..+..++.++..
T Consensus 101 ~rh~l~~~~~~g~vP~IkFV~DK~~~~l~e~d~ll~ 136 (207)
T KOG4700|consen 101 IRHRLEESIGIGTVPEIKFVGDKALLMLQEMDKLLR 136 (207)
T ss_pred HHHHHHHHhccccCCceEEecchHHHHHHHHHHHHH
Confidence 344444444445665 55999987776666555443
No 383
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=46.32 E-value=59 Score=20.03 Aligned_cols=26 Identities=8% Similarity=0.248 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCCceEEEeccccchH
Q 034165 25 HAIKRLFYDQGVSPAIYELDEDARGK 50 (102)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~id~~~~~~ 50 (102)
.++.++|.+.+++|+.++........
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~ 27 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSE 27 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHH
Confidence 46788999999999998876544333
No 384
>PRK00766 hypothetical protein; Provisional
Probab=46.13 E-value=41 Score=22.34 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=30.2
Q ss_pred CCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 36 VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 36 ~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
+-+..+.+|-.+....+.+.+......+.+=.|+++|--+|||+-
T Consensus 43 v~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNv 87 (194)
T PRK00766 43 VLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNV 87 (194)
T ss_pred EEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEE
Confidence 335677777666666666555543323567788889988888864
No 385
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=46.07 E-value=67 Score=19.50 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=17.9
Q ss_pred CCCCCccEEEECCeEe-eccHHHHH
Q 034165 60 GCNPSVPAVFIGGKFV-GSANTVMT 83 (102)
Q Consensus 60 ~~~~~vP~vfv~g~~i-gg~~~l~~ 83 (102)
.|-..+|.|.+|++.| -|-.++..
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~ 103 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVAR 103 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHH
Confidence 4558899999999777 66666544
No 386
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=46.01 E-value=6.3 Score=19.70 Aligned_cols=6 Identities=33% Similarity=1.159 Sum_probs=4.2
Q ss_pred ChhHHH
Q 034165 21 CCMCHA 26 (102)
Q Consensus 21 Cp~C~~ 26 (102)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 788863
No 387
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=45.86 E-value=81 Score=21.04 Aligned_cols=57 Identities=19% Similarity=0.128 Sum_probs=38.2
Q ss_pred EEEEecC-----CChhH----HHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCC--CCccEEE
Q 034165 13 VVIFSKS-----SCCMC----HAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCN--PSVPAVF 69 (102)
Q Consensus 13 v~vy~~~-----~Cp~C----~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~--~~vP~vf 69 (102)
+++|+.| -||.= .+...-|+++|++.--+.+|......++.+.+.+..+. ..+|.|-
T Consensus 36 ~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~Pmia 103 (194)
T COG0450 36 VVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIA 103 (194)
T ss_pred EEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEE
Confidence 6667765 47632 24445578888888888888877777777777766554 4556553
No 388
>PF15616 TerY-C: TerY-C metal binding domain
Probab=45.85 E-value=6.5 Score=24.47 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=9.3
Q ss_pred EEecCCChhHHHH
Q 034165 15 IFSKSSCCMCHAI 27 (102)
Q Consensus 15 vy~~~~Cp~C~~~ 27 (102)
+.+.|+||+|-..
T Consensus 74 L~g~PgCP~CGn~ 86 (131)
T PF15616_consen 74 LIGAPGCPHCGNQ 86 (131)
T ss_pred hcCCCCCCCCcCh
Confidence 4556899999544
No 389
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=45.50 E-value=1.2e+02 Score=22.06 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=40.7
Q ss_pred CCEEEEecCC----ChhHHHHHHHHHhcCCCceEEE-eccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHH
Q 034165 11 KAVVIFSKSS----CCMCHAIKRLFYDQGVSPAIYE-LDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTV 81 (102)
Q Consensus 11 ~~v~vy~~~~----Cp~C~~~~~~l~~~~~~~~~~~-id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l 81 (102)
.++.+.+.+. ++...++...|++.++++..++ +..++....+.+..........=-.|-|+|--+.+.-..
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ 102 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKS 102 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHH
Confidence 3566666543 6777899999999999876663 665666555444444332111112445666444444333
No 390
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=45.35 E-value=20 Score=21.41 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=15.6
Q ss_pred CEEEEecCCChhHHHHHHHHHh
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYD 33 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~ 33 (102)
...+-..+.||.|.+-+.-|..
T Consensus 25 ~~k~H~~s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 25 TAKQHNSSQCPSCNKKRAELAQ 46 (104)
T ss_pred cccccCcccChHHHHHHHHHHH
Confidence 3556667889999987665543
No 391
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=45.19 E-value=60 Score=18.66 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhcCCCceEEEecc---------------ccchHHHHHHHHhhCCCCCccEEEECCeEeeccH
Q 034165 22 CMCHAIKRLFYDQGVSPAIYELDE---------------DARGKEMEWALVRLGCNPSVPAVFIGGKFVGSAN 79 (102)
Q Consensus 22 p~C~~~~~~l~~~~~~~~~~~id~---------------~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~ 79 (102)
-...++++.+++.|++++..-.+. .|.-+...+.+++......+|...++....|-.+
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~d 86 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMMN 86 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcccCC
Confidence 456788888888888765433221 1222233344554334467899999887666443
No 392
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=44.32 E-value=48 Score=20.26 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhcC---------CCceEEEecccc-chHHHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 22 CMCHAIKRLFYDQG---------VSPAIYELDEDA-RGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 22 p~C~~~~~~l~~~~---------~~~~~~~id~~~-~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
|.-...+.+++..| ..|...+.+... +..++-+.+.....--.-|.|+.+|+.+-||++
T Consensus 38 ~t~~eL~~~l~~~g~~~lin~~~~~~r~l~~~~~~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~~ 106 (126)
T TIGR01616 38 WHADTLRPYFGNKPVGSWFNRAAPRVKSGEVNPDSIDEASALALMVSDPLLIRRPLMDLGGIRCAGFDR 106 (126)
T ss_pred cCHHHHHHHHHHcCHHHHHhccchHhhhCCCCcccCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCCH
Confidence 44456666665543 334444433222 123344455444433456999999999999985
No 393
>KOG3490 consensus Transcription elongation factor SPT4 [Transcription]
Probab=44.29 E-value=70 Score=19.23 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=18.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCceEEEe
Q 034165 13 VVIFSKSSCCMCHAIKRLFYDQGVSPAIYEL 43 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~i 43 (102)
+-.|-+.+||.|. +|+..|-.-.+++.
T Consensus 20 ~~~F~~dGC~Nc~----~l~mkgn~e~V~ec 46 (111)
T KOG3490|consen 20 LNGFRKDGCENCP----MLNMKGNVENVYEC 46 (111)
T ss_pred hhhhhhcCCCCch----hhhhccCcceeEEe
Confidence 4468889999999 66666644444444
No 394
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=44.19 E-value=82 Score=22.91 Aligned_cols=6 Identities=17% Similarity=0.683 Sum_probs=3.0
Q ss_pred ccEEEE
Q 034165 65 VPAVFI 70 (102)
Q Consensus 65 vP~vfv 70 (102)
+|.+.+
T Consensus 352 IP~L~i 357 (380)
T TIGR02263 352 IPQIAF 357 (380)
T ss_pred CCEEEE
Confidence 555544
No 395
>KOG4749 consensus Inositol polyphosphate kinase [Signal transduction mechanisms]
Probab=43.82 E-value=47 Score=24.12 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=31.1
Q ss_pred CChhHHHHHHHHHhcCC----CceEEEeccccchHHHHHHHHhhCC-CCCccEEEECCeEe-ecc
Q 034165 20 SCCMCHAIKRLFYDQGV----SPAIYELDEDARGKEMEWALVRLGC-NPSVPAVFIGGKFV-GSA 78 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~~----~~~~~~id~~~~~~~~~~~l~~~~~-~~~vP~vfv~g~~i-gg~ 78 (102)
-|.+|..-..-+.+..+ +|...|+-+... ..++++++.... ...==.||+||..| ||+
T Consensus 156 ~cr~cm~QvlK~~~~~~sqisey~PLDLfSG~k-~rm~~AikaL~~~pqnnlrvF~nG~lv~gg~ 219 (375)
T KOG4749|consen 156 ICRFCMHQVLKLRENHISQISEYDPLDLFSGSK-ERMHKAIKALYSTPQNNLRVFLNGSLVFGGL 219 (375)
T ss_pred hhHHHHHHHHHHhhcchhhhhccCchhhccccH-HHHHHHHHHHhhccccceeEEeccceeeccc
Confidence 47777655444444333 244445543332 236667776532 11223789999888 554
No 396
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=43.79 E-value=71 Score=19.98 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=32.0
Q ss_pred EecCCChhHHHHHHHHHhcCC---C---ceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEe
Q 034165 16 FSKSSCCMCHAIKRLFYDQGV---S---PAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFV 75 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~~---~---~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~i 75 (102)
|+.++-|.|.++-++|.+..- + .-.+|+++.++-.. .. +.+ .+..--+|-+++++
T Consensus 27 FG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~---~y-el~-dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 27 FGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQ---MY-ELY-DPCTVMFFFRNKHM 87 (133)
T ss_dssp EE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHH---HT-TS--SSEEEEEEETTEEE
T ss_pred eCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhc---cc-ccC-CCeEEEEEecCeEE
Confidence 999999999999999965432 2 23567776665332 11 122 12222345588777
No 397
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=43.43 E-value=22 Score=24.13 Aligned_cols=17 Identities=12% Similarity=0.483 Sum_probs=14.3
Q ss_pred CCEEEEecCCChhHHHH
Q 034165 11 KAVVIFSKSSCCMCHAI 27 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~ 27 (102)
-+|++|+-+-||+|.+.
T Consensus 41 v~ItlyyEaLCPdc~~F 57 (220)
T KOG3160|consen 41 VNITLYYEALCPDCSKF 57 (220)
T ss_pred eEEEEEEEecCccHHHH
Confidence 36899999999999743
No 398
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=43.30 E-value=1.2e+02 Score=21.81 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=32.6
Q ss_pred CCEEEEecCCC---hhHHHHHHHHHhcCCCceEE-EeccccchHHHHHHHHhh
Q 034165 11 KAVVIFSKSSC---CMCHAIKRLFYDQGVSPAIY-ELDEDARGKEMEWALVRL 59 (102)
Q Consensus 11 ~~v~vy~~~~C---p~C~~~~~~l~~~~~~~~~~-~id~~~~~~~~~~~l~~~ 59 (102)
.++.+.+.+.. +.-.+++..|++.++++..+ ++..++....+.+.....
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~ 81 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVF 81 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 35666665543 56778999999999987666 366567666555554443
No 399
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=42.88 E-value=18 Score=19.62 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=18.8
Q ss_pred CCCCCccEEEECCeEeeccHHHHH-HHHcCchHHHHHhc
Q 034165 60 GCNPSVPAVFIGGKFVGSANTVMT-LQLNGSLKKLLKDA 97 (102)
Q Consensus 60 ~~~~~vP~vfv~g~~igg~~~l~~-~~~~g~L~~~L~~~ 97 (102)
.|....|.| |||.|-+.. .-++-+|++||++.
T Consensus 13 pGa~~lP~I------IGGSDLi~h~~~knseleeWl~~e 45 (65)
T PF08599_consen 13 PGAGGLPHI------IGGSDLIAHHAGKNSELEEWLRQE 45 (65)
T ss_pred CCCCCCCee------ecchhhhhccccccccHHHHHHHH
Confidence 344566654 566665432 34455888888753
No 400
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=42.79 E-value=40 Score=20.02 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=39.5
Q ss_pred CCEEEEec-CCChhHHHHHHHHHhcCCCceEEEeccc-c-chHHHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 11 KAVVIFSK-SSCCMCHAIKRLFYDQGVSPAIYELDED-A-RGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 11 ~~v~vy~~-~~Cp~C~~~~~~l~~~~~~~~~~~id~~-~-~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
..+++++. +....|.++.+.|++.|++...+++-.- | +...+.+.+.+.. .-.++-++...||+..
T Consensus 10 ~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~----~vvvvee~~~~gg~g~ 78 (124)
T PF02780_consen 10 ADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTG----RVVVVEEHYKIGGLGS 78 (124)
T ss_dssp SSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHH----HHHHSETCESEEEEHS
T ss_pred CCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhc----cccccccccccccHHH
Confidence 45666554 5678999999999999999888877432 2 2233333333221 1123345555677664
No 401
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=42.71 E-value=1.1e+02 Score=21.00 Aligned_cols=12 Identities=33% Similarity=0.493 Sum_probs=5.8
Q ss_pred hHHHHHhcCccc
Q 034165 90 LKKLLKDAGAIW 101 (102)
Q Consensus 90 L~~~L~~~g~~~ 101 (102)
+.+.|...|+.|
T Consensus 140 v~kVLa~tGa~R 151 (277)
T COG1927 140 VMKVLAATGAFR 151 (277)
T ss_pred HHHHHHhccHHH
Confidence 334455555544
No 402
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=42.23 E-value=1.3e+02 Score=21.72 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=33.4
Q ss_pred CCEEEEecC----CChhHHHHHHHHHhcCCCceEE-EeccccchHHHHHHHHh
Q 034165 11 KAVVIFSKS----SCCMCHAIKRLFYDQGVSPAIY-ELDEDARGKEMEWALVR 58 (102)
Q Consensus 11 ~~v~vy~~~----~Cp~C~~~~~~l~~~~~~~~~~-~id~~~~~~~~~~~l~~ 58 (102)
.++.+.+.+ ..+...+++..|++.++++..+ ++..++....+.+....
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~ 78 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAAL 78 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHH
Confidence 466666654 4678889999999999988755 56666666655544443
No 403
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=42.13 E-value=39 Score=19.93 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=8.7
Q ss_pred EecCCChhHHH
Q 034165 16 FSKSSCCMCHA 26 (102)
Q Consensus 16 y~~~~Cp~C~~ 26 (102)
|...+||.|..
T Consensus 18 f~~~gCpnC~~ 28 (98)
T cd07973 18 FERDGCPNCEG 28 (98)
T ss_pred ccCCCCCCCcc
Confidence 56689999973
No 404
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=41.84 E-value=1.2e+02 Score=21.10 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=41.6
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCC-CceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEe
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYDQGV-SPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFV 75 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~~~~-~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~i 75 (102)
.+.|.+++..+|.-+.-++.++.+++- -...++|+... ...+.+.+......+.-=.||+|+=-.
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~-L~~l~~l~~~l~~~~~kFIlf~DDLsF 117 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED-LGDLPELLDLLRDRPYKFILFCDDLSF 117 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH-hccHHHHHHHHhcCCCCEEEEecCCCC
Confidence 346999999999999999999987654 36777776442 222333333333333334678887433
No 405
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=41.77 E-value=31 Score=16.85 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=16.8
Q ss_pred EECCeEeeccH--HHHHHHHcCchH
Q 034165 69 FIGGKFVGSAN--TVMTLQLNGSLK 91 (102)
Q Consensus 69 fv~g~~igg~~--~l~~~~~~g~L~ 91 (102)
..||+..|-++ ++.++..+|++.
T Consensus 5 ~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 5 ARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred eCCCeEECCcCHHHHHHHHHcCCCC
Confidence 44788887664 478888888775
No 406
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=41.73 E-value=91 Score=19.83 Aligned_cols=28 Identities=11% Similarity=0.367 Sum_probs=19.4
Q ss_pred CCEEEEec-CCChhHHHHHH-HHHhcCCCc
Q 034165 11 KAVVIFSK-SSCCMCHAIKR-LFYDQGVSP 38 (102)
Q Consensus 11 ~~v~vy~~-~~Cp~C~~~~~-~l~~~~~~~ 38 (102)
..+++|.. +.|++|..... +.++.|++.
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~ 129 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKLGLKS 129 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHcCCCe
Confidence 34666665 67999985544 457889874
No 407
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=41.59 E-value=57 Score=21.57 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=33.7
Q ss_pred CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHH--HHHHH
Q 034165 35 GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT--VMTLQ 85 (102)
Q Consensus 35 ~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~--l~~~~ 85 (102)
++.+..+.+|-.+....+.+...+... ..+-.|+.+|--++||+- +.+++
T Consensus 41 gv~~~~i~vDG~D~T~~i~~~v~~~~~-~~~rvVlLdGIt~aGFNivDi~~l~ 92 (185)
T COG1628 41 GVAFSLITVDGLDVTDAISDMVNRSKR-RDLRVVLLDGITFAGFNIVDIEALY 92 (185)
T ss_pred eeEEEEEEecCchHHHHHHHHHHHhhc-ccccEEEECCeeeccceEecHHHHH
Confidence 345677888877766666666655543 337888999988898864 34444
No 408
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=41.37 E-value=82 Score=22.60 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=41.8
Q ss_pred hcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEecc----c--cchHHHHHHHHhhCCCCCccEE-EEC
Q 034165 8 ASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDE----D--ARGKEMEWALVRLGCNPSVPAV-FIG 71 (102)
Q Consensus 8 ~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~----~--~~~~~~~~~l~~~~~~~~vP~v-fv~ 71 (102)
+.+..|.+|+.|+-.-..-|+.+-.+.++++-.+.-.+ + +..+.+++...+.. .+.|+| |++
T Consensus 149 WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~--~~aPcivFiD 217 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERAR--KAAPCIVFID 217 (368)
T ss_pred cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHH--hcCCeEEEeh
Confidence 45667999999999999999999999888876654322 1 12233555555443 457776 555
No 409
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=41.16 E-value=41 Score=22.82 Aligned_cols=51 Identities=6% Similarity=0.098 Sum_probs=33.0
Q ss_pred EecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC
Q 034165 16 FSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG 71 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~ 71 (102)
.++.+-|.|.-....|++++..|..+..-..+... .+.. +.-...|++||-
T Consensus 118 Ly~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~----cIpN-YPe~nlPTl~VY 168 (240)
T KOG3170|consen 118 LYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATT----CIPN-YPESNLPTLLVY 168 (240)
T ss_pred eeccccHHHHHHHHHHHHHhhcCCcceEEeccccc----ccCC-CcccCCCeEEEe
Confidence 55678999999999999998877543332222221 1222 334678999884
No 410
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=41.09 E-value=1.2e+02 Score=21.13 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=44.1
Q ss_pred CEEEEecCC--ChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeecc-HHH----HHH
Q 034165 12 AVVIFSKSS--CCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSA-NTV----MTL 84 (102)
Q Consensus 12 ~v~vy~~~~--Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~-~~l----~~~ 84 (102)
.+++|.+|+ -|-=.+++++|++.|++.-+ |...+..+. .+.+...+ +=.|.+.....-|. .+. .=.
T Consensus 62 Df~i~isPN~a~PGP~~ARE~l~~~~iP~Iv--I~D~p~~K~-~d~l~~~g----~GYIivk~DpMIGArREFLDP~EMa 134 (277)
T PRK00994 62 DFVIVISPNPAAPGPKKAREILKAAGIPCIV--IGDAPGKKV-KDAMEEQG----LGYIIVKADPMIGARREFLDPVEMA 134 (277)
T ss_pred CEEEEECCCCCCCCchHHHHHHHhcCCCEEE--EcCCCccch-HHHHHhcC----CcEEEEecCccccchhhccCHHHHH
Confidence 467777765 56667888888888774433 333333322 23444332 33555554443332 221 111
Q ss_pred HHcCchHHHHHhcCcccC
Q 034165 85 QLNGSLKKLLKDAGAIWL 102 (102)
Q Consensus 85 ~~~g~L~~~L~~~g~~~~ 102 (102)
.=++.+-+.|.-+|+.||
T Consensus 135 ~fNaD~~kVLa~tG~~Rl 152 (277)
T PRK00994 135 LFNADVLKVLAGTGAVRL 152 (277)
T ss_pred HhhhhHHHHHHhhhHHHH
Confidence 124566677777777664
No 411
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=40.97 E-value=1.2e+02 Score=23.40 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=33.4
Q ss_pred hhhcCCC-EEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 6 RLASQKA-VVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 6 ~~~~~~~-v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
+.|.... ++.|+ ||+--..+-.--++.+.+|.++-||..|..+- +..++.+.. ..+|+.|+
T Consensus 355 ~KI~dgdviltyg--~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG-~~~lr~Lv~-~GinctYv 416 (556)
T KOG1467|consen 355 TKIQDGDVLLTYG--SSSVVNMILLEAKELGKKFRVVVVDSRPNLEG-RKLLRRLVD-RGINCTYV 416 (556)
T ss_pred HHhhcCCEEEEec--chHHHHHHHHHHHHhCcceEEEEEeCCCCcch-HHHHHHHHH-cCCCeEEE
Confidence 3444544 44455 33333333333467788999999998887643 334444322 44555543
No 412
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=40.58 E-value=1.4e+02 Score=21.59 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=39.7
Q ss_pred CCEEEEecCC---ChhHHHHHHHHHhcCCCceEEE-eccccchHHHHHHHHhhCCCCCccEEEECCeEeeccH
Q 034165 11 KAVVIFSKSS---CCMCHAIKRLFYDQGVSPAIYE-LDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSAN 79 (102)
Q Consensus 11 ~~v~vy~~~~---Cp~C~~~~~~l~~~~~~~~~~~-id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~ 79 (102)
.++.+.+.+. .++..++...|++.++++..++ +..++....+.+.+........==.|-|+|--+.+..
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~A 101 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPIDCA 101 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHH
Confidence 4566666543 3567889999999898877664 5556666555555544322111124445654443333
No 413
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=40.10 E-value=1.1e+02 Score=20.07 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=45.5
Q ss_pred CCCEEEEecC---CChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHH-HHHHH
Q 034165 10 QKAVVIFSKS---SCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT-VMTLQ 85 (102)
Q Consensus 10 ~~~v~vy~~~---~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~-l~~~~ 85 (102)
..+|.+.... .+.++...++.+++.|.+...+.+.......++.+.+.. .-.||+.| |.-.. +..+.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~------ad~I~~~G---G~~~~~~~~l~ 99 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLE------ADGIFVGG---GNQLRLLSVLR 99 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhh------CCEEEEcC---CcHHHHHHHHH
Confidence 3456665443 357889999999999998776655333333444444433 44677766 33333 34455
Q ss_pred HcCchHHHHHh
Q 034165 86 LNGSLKKLLKD 96 (102)
Q Consensus 86 ~~g~L~~~L~~ 96 (102)
+++-++.+++.
T Consensus 100 ~t~~~~~i~~~ 110 (210)
T cd03129 100 ETPLLDAILKR 110 (210)
T ss_pred hCChHHHHHHH
Confidence 55566555543
No 414
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=40.06 E-value=58 Score=22.70 Aligned_cols=22 Identities=9% Similarity=0.042 Sum_probs=18.3
Q ss_pred EecCCChhHHHHHHHHHh-cCCC
Q 034165 16 FSKSSCCMCHAIKRLFYD-QGVS 37 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~-~~~~ 37 (102)
+-+..||.++.+|..|++ +|++
T Consensus 170 ~~t~~~pla~~~R~~lr~~~~~~ 192 (268)
T PRK15116 170 AKTIQDPLAAKLRERLKSDFGVV 192 (268)
T ss_pred ecccCChHHHHHHHHHHHhhCCC
Confidence 444689999999999988 7875
No 415
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=39.79 E-value=1.1e+02 Score=24.18 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=44.6
Q ss_pred CEEEEec-CCChhHHHHHHHHHhcCCCceEEEeccc-cchHHHHHHHHhhCCCCCccEEEECCeEeeccHH-H-HHHHHc
Q 034165 12 AVVIFSK-SSCCMCHAIKRLFYDQGVSPAIYELDED-ARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT-V-MTLQLN 87 (102)
Q Consensus 12 ~v~vy~~-~~Cp~C~~~~~~l~~~~~~~~~~~id~~-~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~-l-~~~~~~ 87 (102)
.|++.+. +....|.+|...|++.|+..+++|+-.- |-..+....+.+.+ -..|.+.+..+||+.. + ..+.++
T Consensus 546 dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~----~~vVt~Ee~~~GG~Gs~Va~~l~e~ 621 (641)
T PLN02234 546 RVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSH----EVLITVEEGSIGGFGSHVVQFLALD 621 (641)
T ss_pred CEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhC----CEEEEECCCCCCcHHHHHHHHHHHc
Confidence 4555544 4466888999999999999999988632 33333222232222 1234444444599965 2 334455
Q ss_pred CchHHH
Q 034165 88 GSLKKL 93 (102)
Q Consensus 88 g~L~~~ 93 (102)
|.++..
T Consensus 622 ~~~~~~ 627 (641)
T PLN02234 622 GLLDGK 627 (641)
T ss_pred CCCCCC
Confidence 544443
No 416
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=39.48 E-value=32 Score=22.10 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=12.8
Q ss_pred EEecCCChhHHHHHHHHHh
Q 034165 15 IFSKSSCCMCHAIKRLFYD 33 (102)
Q Consensus 15 vy~~~~Cp~C~~~~~~l~~ 33 (102)
+|+.|-|++|-.....+.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~k 20 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRK 20 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHH
Confidence 5889999999766666643
No 417
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=39.19 E-value=76 Score=18.32 Aligned_cols=64 Identities=6% Similarity=0.014 Sum_probs=37.7
Q ss_pred EEEEecCCChhHHHHHHHH----Hhc-C--CCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC-----CeEeeccHH
Q 034165 13 VVIFSKSSCCMCHAIKRLF----YDQ-G--VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG-----GKFVGSANT 80 (102)
Q Consensus 13 v~vy~~~~Cp~C~~~~~~l----~~~-~--~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~-----g~~igg~~~ 80 (102)
..+|....-|-+.++.+-+ ++. + .+.+++|+..+|+.++ ...--.+|++.-- -+.||++++
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE-------~~~IvATPtLIK~~P~P~rriiGdls~ 78 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAE-------EDKILATPTLSKILPPPVRKIIGDLSD 78 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHh-------HCCEEEecHHhhcCCCCcceeeccccc
Confidence 5678888888887655544 332 2 2346778887775443 1222345654332 367888887
Q ss_pred HHH
Q 034165 81 VMT 83 (102)
Q Consensus 81 l~~ 83 (102)
...
T Consensus 79 ~~~ 81 (87)
T TIGR02654 79 RER 81 (87)
T ss_pred hHH
Confidence 554
No 418
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=39.01 E-value=21 Score=19.05 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=9.3
Q ss_pred CCChhHHHHHHHH
Q 034165 19 SSCCMCHAIKRLF 31 (102)
Q Consensus 19 ~~Cp~C~~~~~~l 31 (102)
|-||.|+++-+-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 5699998875543
No 419
>PRK02935 hypothetical protein; Provisional
Probab=38.88 E-value=11 Score=22.59 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=12.7
Q ss_pred CChhHHHHHHHHHhc
Q 034165 20 SCCMCHAIKRLFYDQ 34 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~ 34 (102)
.||.|++.-+.|-+-
T Consensus 72 ~CP~C~K~TKmLGrv 86 (110)
T PRK02935 72 ICPSCEKPTKMLGRV 86 (110)
T ss_pred ECCCCCchhhhccce
Confidence 699999999988654
No 420
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.27 E-value=78 Score=18.03 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=14.8
Q ss_pred HhhhcCCCEEEEecCCChh--HHHHHHHHHhcCCCceE
Q 034165 5 GRLASQKAVVIFSKSSCCM--CHAIKRLFYDQGVSPAI 40 (102)
Q Consensus 5 ~~~~~~~~v~vy~~~~Cp~--C~~~~~~l~~~~~~~~~ 40 (102)
.+.+....++++....+.+ +..+++.-++.++++.+
T Consensus 43 ~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred HHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 3344444444444433332 23444444444444433
No 421
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.99 E-value=16 Score=20.64 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=13.2
Q ss_pred CChhH-HHHHHHHHhcCCCce
Q 034165 20 SCCMC-HAIKRLFYDQGVSPA 39 (102)
Q Consensus 20 ~Cp~C-~~~~~~l~~~~~~~~ 39 (102)
.||.| .+++++|...|+.|+
T Consensus 35 ~ce~c~a~~kk~l~~vgi~fK 55 (82)
T COG2331 35 TCEECGARLKKLLNAVGIVFK 55 (82)
T ss_pred cChhhChHHHHhhccceEEEe
Confidence 47777 466777777776654
No 422
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=37.62 E-value=97 Score=20.73 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCe
Q 034165 23 MCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGK 73 (102)
Q Consensus 23 ~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~ 73 (102)
....++.+|+++++.-..+.+..+.....+.+.+. +.....|.+.|..+
T Consensus 137 ~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~--~~~~y~p~iiV~NK 185 (233)
T cd01896 137 DEKTIKAILREYKIHNADVLIREDITVDDLIDVIE--GNRVYIPCLYVYNK 185 (233)
T ss_pred CHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHh--CCceEeeEEEEEEC
Confidence 45899999999999877777766655556655553 33355787777554
No 423
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.58 E-value=1.5e+02 Score=22.49 Aligned_cols=87 Identities=24% Similarity=0.378 Sum_probs=45.0
Q ss_pred HHhhhcCCCEEEEecCC-ChhHHHHHHHHHh-cCCC-ceEEEeccccchHHHHHHHHhhCCCCCccEEEEC-CeEeeccH
Q 034165 4 VGRLASQKAVVIFSKSS-CCMCHAIKRLFYD-QGVS-PAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG-GKFVGSAN 79 (102)
Q Consensus 4 l~~~~~~~~v~vy~~~~-Cp~C~~~~~~l~~-~~~~-~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~-g~~igg~~ 79 (102)
+.+++++..|++..... =..|..-...|++ .++. ...-.+|-+..+-. ++.... ....|.+||+ |+++.++.
T Consensus 208 v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGGg---AlSaVa-aTksPIiFIGtGEhmdDlE 283 (483)
T KOG0780|consen 208 VSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGGG---ALSAVA-ATKSPIIFIGTGEHMDDLE 283 (483)
T ss_pred HHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCCc---eeeehh-hhCCCEEEEecCccccccC
Confidence 45566666666655543 3355544444433 3332 22234454443321 111111 1458999998 89988775
Q ss_pred H------HHHHHHcCchHHHH
Q 034165 80 T------VMTLQLNGSLKKLL 94 (102)
Q Consensus 80 ~------l~~~~~~g~L~~~L 94 (102)
. +.++.-.|.+..++
T Consensus 284 ~F~pk~FvsrlLGmGDi~glv 304 (483)
T KOG0780|consen 284 PFDPKPFVSRLLGMGDIEGLV 304 (483)
T ss_pred CCChHHHHHHHhccccHHHHH
Confidence 4 34455556555444
No 424
>PF14793 DUF4478: Domain of unknown function (DUF4478); PDB: 2PMB_D 3GH1_D 3BQ9_B.
Probab=37.53 E-value=25 Score=21.29 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=10.9
Q ss_pred EEEECCeEeeccHH
Q 034165 67 AVFIGGKFVGSANT 80 (102)
Q Consensus 67 ~vfv~g~~igg~~~ 80 (102)
.-||||+.|.|..+
T Consensus 82 ~AFVDG~mI~gI~e 95 (112)
T PF14793_consen 82 SAFVDGKMIRGIQE 95 (112)
T ss_dssp GGEETTEE-HHHHH
T ss_pred HhccchHHHHHHHH
Confidence 45999999999876
No 425
>PRK09301 circadian clock protein KaiB; Provisional
Probab=37.51 E-value=81 Score=18.83 Aligned_cols=66 Identities=6% Similarity=0.001 Sum_probs=39.3
Q ss_pred CEEEEecCCChhHHHHHHHH----Hh-cC--CCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC-----CeEeeccH
Q 034165 12 AVVIFSKSSCCMCHAIKRLF----YD-QG--VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG-----GKFVGSAN 79 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l----~~-~~--~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~-----g~~igg~~ 79 (102)
...+|....-|-+.++.+-+ ++ ++ .+.+++||..+|..++ ...--.+|++.-- -+.||+++
T Consensus 8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE-------~~~IvATPTLIK~~P~P~rriiGDls 80 (103)
T PRK09301 8 ILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAE-------EDKILATPTLAKILPPPVRKIIGDLS 80 (103)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHh-------HCCeEEecHHhhcCCCCcceeecccc
Confidence 35678888888887665544 33 22 2346778887775443 1222345654332 47788888
Q ss_pred HHHHH
Q 034165 80 TVMTL 84 (102)
Q Consensus 80 ~l~~~ 84 (102)
+....
T Consensus 81 d~~kV 85 (103)
T PRK09301 81 DREKV 85 (103)
T ss_pred cHHHH
Confidence 76553
No 426
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=37.29 E-value=36 Score=18.75 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=13.0
Q ss_pred CChhHH-HHHHHHHhcCC
Q 034165 20 SCCMCH-AIKRLFYDQGV 36 (102)
Q Consensus 20 ~Cp~C~-~~~~~l~~~~~ 36 (102)
=||.|+ .|++-+++.++
T Consensus 17 PC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 17 PCPECRIHAKEAIQKNNI 34 (70)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 499995 77888877765
No 427
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=37.29 E-value=30 Score=20.50 Aligned_cols=17 Identities=29% Similarity=0.439 Sum_probs=13.2
Q ss_pred CCccEEEECCeEeeccH
Q 034165 63 PSVPAVFIGGKFVGSAN 79 (102)
Q Consensus 63 ~~vP~vfv~g~~igg~~ 79 (102)
...=.+||||.++|...
T Consensus 62 ~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 62 AFRASVWVNGWFLGSYW 78 (111)
T ss_dssp TEEEEEEETTEEEEEEE
T ss_pred ceEEEEEECCEEeeeec
Confidence 34468999999999754
No 428
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=37.11 E-value=52 Score=21.38 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=28.0
Q ss_pred HHHHHHHHhc--CCC--ceEEEeccccchHHHHHHHHhh-CCCCCccEEEECC
Q 034165 25 HAIKRLFYDQ--GVS--PAIYELDEDARGKEMEWALVRL-GCNPSVPAVFIGG 72 (102)
Q Consensus 25 ~~~~~~l~~~--~~~--~~~~~id~~~~~~~~~~~l~~~-~~~~~vP~vfv~g 72 (102)
.+.+.++..+ |-. .-++|+...+.-....+.|.+. ...+++|.|.|++
T Consensus 68 ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGN 120 (198)
T KOG0079|consen 68 ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGN 120 (198)
T ss_pred HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceeccc
Confidence 3455555443 222 3455666554444556666665 5557999999975
No 429
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=37.08 E-value=79 Score=19.53 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCceEEEecccc
Q 034165 26 AIKRLFYDQGVSPAIYELDEDA 47 (102)
Q Consensus 26 ~~~~~l~~~~~~~~~~~id~~~ 47 (102)
.+.++|++++++|+.++-+...
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~ 23 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDP 23 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCC
Confidence 4788999999999999887543
No 430
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=36.67 E-value=1.4e+02 Score=20.65 Aligned_cols=70 Identities=7% Similarity=-0.016 Sum_probs=43.4
Q ss_pred hHHHhhhcCCCEEEEecCCChhHHHHHHHHHhc-----CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECC
Q 034165 2 DRVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQ-----GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGG 72 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~-----~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g 72 (102)
..++++++...++++.. +|.+=.++...++.+ ++..-.+|++.+.....+.+...+.-+...+-.++.|-
T Consensus 18 gLVk~llk~~~i~~iia-t~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~~GlnlLinNa 92 (249)
T KOG1611|consen 18 GLVKELLKDKGIEVIIA-TARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGSDGLNLLINNA 92 (249)
T ss_pred HHHHHHhcCCCcEEEEE-ecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcccCCceEEEecc
Confidence 46889999888888774 444444434444443 33344556665666666666777776666776666664
No 431
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=36.54 E-value=69 Score=23.84 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCceEEEecc--ccc---hHHHHHHHHhhCCCCCccEEEECCeEee
Q 034165 25 HAIKRLFYDQGVSPAIYELDE--DAR---GKEMEWALVRLGCNPSVPAVFIGGKFVG 76 (102)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~id~--~~~---~~~~~~~l~~~~~~~~vP~vfv~g~~ig 76 (102)
....++.++++++--+..... ++. ...+++.+.+ ..+|.+.++|....
T Consensus 351 ~~l~~li~e~~vDGVI~~~~~~C~~~s~e~~~ik~~l~~----~GIP~L~ietD~~d 403 (430)
T TIGR03191 351 EMMLNIARDWNVDGCMLHLNRGCEGLSIGIMENRLAIAK----AGIPIMTFEGNMGD 403 (430)
T ss_pred HHHHHHHHHHCCCEEEEcCCCCCccchHhHHHHHHHHHH----cCCCEEEEECCCCC
Confidence 344445566666643332221 111 1123444433 34788877776543
No 432
>CHL00195 ycf46 Ycf46; Provisional
Probab=35.99 E-value=1.6e+02 Score=22.47 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=29.7
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCceEEEec
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELD 44 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id 44 (102)
..|.+|+-|+|+-..-++.+-.+.+.++-.++..
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~ 293 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVG 293 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhH
Confidence 3599999999999999999999999988777664
No 433
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=35.85 E-value=76 Score=19.64 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCCceEEEecccc
Q 034165 26 AIKRLFYDQGVSPAIYELDEDA 47 (102)
Q Consensus 26 ~~~~~l~~~~~~~~~~~id~~~ 47 (102)
.+.++|++.+++|+.++-+..+
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~~~ 24 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEHDE 24 (152)
T ss_pred HHHHHHHHcCCCeEEEeecCCC
Confidence 4778999999999999987544
No 434
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=35.69 E-value=49 Score=21.68 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=37.7
Q ss_pred CChhHHHHHHHHHhcCCCce-EEEeccc-cchHHHHHHHHhhCCCCCcc-----------EEEECCeEeeccHHHHHHHH
Q 034165 20 SCCMCHAIKRLFYDQGVSPA-IYELDED-ARGKEMEWALVRLGCNPSVP-----------AVFIGGKFVGSANTVMTLQL 86 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~~~~~-~~~id~~-~~~~~~~~~l~~~~~~~~vP-----------~vfv~g~~igg~~~l~~~~~ 86 (102)
-||.|..==+.-+++..+|. ..+++.. .+.+.+.+.+.+..|+.++- .-|++. .|.+++.++
T Consensus 51 lCPwCIAdG~AA~kfdg~F~d~~~~~~~~~~~~~~~El~~RTPGy~sWQqe~Wl~hC~D~CaFlG~---vg~~El~~~-- 125 (176)
T PF03691_consen 51 LCPWCIADGSAAKKFDGEFQDDADLEGVGIDPEKLEELFHRTPGYSSWQQEYWLAHCDDYCAFLGY---VGWEELKAM-- 125 (176)
T ss_pred cCHhHhcCcHhHHhcCeEeecchhcccccCCHHHHHHHHhcCCCCcccccchhhhhcCCHHHhcCC---CCHHHHHHH--
Confidence 49999855555555544442 2233322 22233444555555554443 223333 256777777
Q ss_pred cCchHHHHHhc
Q 034165 87 NGSLKKLLKDA 97 (102)
Q Consensus 87 ~g~L~~~L~~~ 97 (102)
.+.+++++++.
T Consensus 126 ~~~~~~~~~~~ 136 (176)
T PF03691_consen 126 PEELEEVLEDY 136 (176)
T ss_pred HHHHHHHHHHH
Confidence 45677777654
No 435
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=35.59 E-value=98 Score=18.38 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=22.1
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCCceEE
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIY 41 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~ 41 (102)
..+|++.....|++..+++. ..+.|...-.+
T Consensus 43 ~GkIvLv~rg~c~f~~K~~~-A~~aGA~avIi 73 (122)
T cd04816 43 KGAIVLVDRGGCPFADKQKV-AAARGAVAVIV 73 (122)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEE
Confidence 45788888899999988776 45556654433
No 436
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=35.47 E-value=48 Score=19.55 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=20.2
Q ss_pred CCccEEE-ECCeEeeccHHHHHHHH
Q 034165 63 PSVPAVF-IGGKFVGSANTVMTLQL 86 (102)
Q Consensus 63 ~~vP~vf-v~g~~igg~~~l~~~~~ 86 (102)
..||.+| .+...+-|.||+.....
T Consensus 3 ~dV~v~~~~~~v~WvgaDEil~IL~ 27 (97)
T PF04512_consen 3 TDVPVFFDVDMVLWVGADEILSILR 27 (97)
T ss_pred CCeeEEEecCceEEecHHHHHHHhC
Confidence 5699999 89999999999877544
No 437
>PRK08118 topology modulation protein; Reviewed
Probab=35.38 E-value=72 Score=20.18 Aligned_cols=32 Identities=6% Similarity=0.102 Sum_probs=26.8
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCceEEE
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYE 42 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~ 42 (102)
.+|.|++.+++.=..-++.+-+..++++...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 47999999999999999999999988754443
No 438
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=35.13 E-value=30 Score=16.37 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=9.2
Q ss_pred HHHHHHHHhcCCCce
Q 034165 25 HAIKRLFYDQGVSPA 39 (102)
Q Consensus 25 ~~~~~~l~~~~~~~~ 39 (102)
.+.+.+|.++||+|.
T Consensus 7 ~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 7 AQLKRILDEHGIEFP 21 (35)
T ss_dssp HHHHHHHHHHT---S
T ss_pred HHHHHHHHHcCCCCC
Confidence 467888999888764
No 439
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=34.86 E-value=1.6e+02 Score=20.66 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=38.2
Q ss_pred CCEEEEecCCChhHHHHHHHHHh----cCCC--ceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeE
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYD----QGVS--PAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKF 74 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~----~~~~--~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ 74 (102)
..+.+...++.+. ..+..+|+. .++. |..+.+...|....++..+++.+- ..==.+||++..
T Consensus 46 ~Gi~lai~S~n~~-~~a~~~l~~~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i-~~~~~vfidD~~ 113 (320)
T TIGR01686 46 QGFLLALASKNDE-DDAKKVFERRKDFILQAEDFDARSINWGPKSESLRKIAKKLNL-GTDSFLFIDDNP 113 (320)
T ss_pred CCCEEEEEcCCCH-HHHHHHHHhCccccCcHHHeeEEEEecCchHHHHHHHHHHhCC-CcCcEEEECCCH
Confidence 3466655566655 677888887 6654 555555555666667766666542 223477887754
No 440
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.79 E-value=1.4e+02 Score=20.09 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHhcCCCceEEEeccccchHH---HHHHHHhhCCCCCccEEEECCe
Q 034165 21 CCMCHAIKRLFYDQGVSPAIYELDEDARGKE---MEWALVRLGCNPSVPAVFIGGK 73 (102)
Q Consensus 21 Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~---~~~~l~~~~~~~~vP~vfv~g~ 73 (102)
=-++...+.+.+...--.-.+||.....-.. +.+.+.+.. ...+|.+.|+++
T Consensus 72 erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK 126 (207)
T KOG0078|consen 72 ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNK 126 (207)
T ss_pred hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeecc
Confidence 3466777777766655566777765444433 333444444 368999999886
No 441
>PRK11700 hypothetical protein; Provisional
Probab=34.41 E-value=71 Score=21.18 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHhcCCCceEEEecc-------ccchHHHHHHHHhhCCCCCccEEEECCeEeecc
Q 034165 20 SCCMCHAIKRLFYDQGVSPAIYELDE-------DARGKEMEWALVRLGCNPSVPAVFIGGKFVGSA 78 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~~~~~~~~id~-------~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~ 78 (102)
+-.|..+...+++.+|++...+.+|. ...+..++..+...+. -+-.-.|||++|.=+
T Consensus 17 l~~F~~ki~~la~~L~ldl~~~~~DHialR~n~~~tAe~w~~~l~~~G~--llSen~INGRPI~l~ 80 (187)
T PRK11700 17 LPRFEQKIQELADRLGLDLSQLEADHIALRCNQNETAERWRQGFLQCGE--LLSENIINGRPICLF 80 (187)
T ss_pred HHHHHHHHHHHHHHhCCCcccccCcEEEEeeCCHHHHHHHHHHHHHhch--hhhccccCCeeEEEE
Confidence 34578889999999998876665554 2333446666666542 334556777777543
No 442
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=34.20 E-value=1.5e+02 Score=20.20 Aligned_cols=70 Identities=10% Similarity=-0.028 Sum_probs=42.4
Q ss_pred HHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccch-HHHHHHHHhhCCCCCccEEEECCe
Q 034165 3 RVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARG-KEMEWALVRLGCNPSVPAVFIGGK 73 (102)
Q Consensus 3 ~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~-~~~~~~l~~~~~~~~vP~vfv~g~ 73 (102)
.+++.++..+.+ ++.-..-.+..+.+++...|.+|-.+|.+..+.. +.+...+.........|.|-|++.
T Consensus 2 ~lk~~l~~g~~~-~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~ 72 (249)
T TIGR02311 2 QFKQALKEGQPQ-IGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIG 72 (249)
T ss_pred hHHHHHHCCCce-EEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCC
Confidence 456666666542 3322233446777778889999999999876543 445545544322344777777653
No 443
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=34.00 E-value=69 Score=18.58 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=11.0
Q ss_pred ccEEEECCeEe--eccHHHHH
Q 034165 65 VPAVFIGGKFV--GSANTVMT 83 (102)
Q Consensus 65 vP~vfv~g~~i--gg~~~l~~ 83 (102)
.-..|.||++. -..+.+.+
T Consensus 49 ~~v~~~GGEPll~~~~~~l~~ 69 (119)
T PF13394_consen 49 STVVFTGGEPLLYLNPEDLIE 69 (119)
T ss_dssp -EEEEESSSGGGSTTHHHHHH
T ss_pred EEEEEECCCCccccCHHHHHH
Confidence 34667788877 44444444
No 444
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=33.46 E-value=1.8e+02 Score=20.86 Aligned_cols=80 Identities=10% Similarity=-0.048 Sum_probs=50.2
Q ss_pred HHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEE----------eccccc-hHHHHHHHHhhCCCCCccEEEEC
Q 034165 3 RVGRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYE----------LDEDAR-GKEMEWALVRLGCNPSVPAVFIG 71 (102)
Q Consensus 3 ~l~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~----------id~~~~-~~~~~~~l~~~~~~~~vP~vfv~ 71 (102)
++.++++..=+.+|+-.++..+..+..+..+.++++-... +...|. ..++...+ ...++.++=.++..
T Consensus 55 ~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i-~~~~wk~vaiiYd~ 133 (371)
T cd06388 55 AFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLL-DHYEWNRFVFLYDT 133 (371)
T ss_pred HHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHH-HhcCceEEEEEecC
Confidence 4556777777888998889999999999999998864321 111222 12233222 33567888888875
Q ss_pred CeEeeccHHHHH
Q 034165 72 GKFVGSANTVMT 83 (102)
Q Consensus 72 g~~igg~~~l~~ 83 (102)
+.-.+..+.+.+
T Consensus 134 ~~~~~~lq~l~~ 145 (371)
T cd06388 134 DRGYSILQAIME 145 (371)
T ss_pred CccHHHHHHHHH
Confidence 654455554433
No 445
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=33.41 E-value=1.1e+02 Score=18.19 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=20.5
Q ss_pred CCCceEEEeccccchHH-HHHHHHhhCCCCCcc
Q 034165 35 GVSPAIYELDEDARGKE-MEWALVRLGCNPSVP 66 (102)
Q Consensus 35 ~~~~~~~~id~~~~~~~-~~~~l~~~~~~~~vP 66 (102)
+++|..+-++......+ ++++|.+++-...-|
T Consensus 14 ~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p 46 (100)
T cd01781 14 TRPYKTILLSINDNADRIVGEALEKYGLEKSDP 46 (100)
T ss_pred CCCeEEEEecCCccHHHHHHHHHHHhCCCccCc
Confidence 56777777776655544 677777776554444
No 446
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=33.22 E-value=1.3e+02 Score=19.87 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCC-ceEEEeccccc-hHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcC
Q 034165 26 AIKRLFYDQGVS-PAIYELDEDAR-GKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNG 88 (102)
Q Consensus 26 ~~~~~l~~~~~~-~~~~~id~~~~-~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g 88 (102)
.+.+.+.+.|++ ..++|++.... .......+++......+|.+.-+| |...++..++.+.|
T Consensus 33 ~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~Gg--I~~~e~~~~~~~~G 95 (234)
T cd04732 33 EVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGG--IRSLEDIERLLDLG 95 (234)
T ss_pred HHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCC--cCCHHHHHHHHHcC
Confidence 344445567775 34556654321 111111333332223588777666 77777777776666
No 447
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=33.09 E-value=1.8e+02 Score=20.80 Aligned_cols=47 Identities=6% Similarity=0.259 Sum_probs=30.5
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCceEE-EeccccchHHHHHHHH
Q 034165 11 KAVVIFSKSSCCMCHAIKRLFYDQGVSPAIY-ELDEDARGKEMEWALV 57 (102)
Q Consensus 11 ~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~-~id~~~~~~~~~~~l~ 57 (102)
.++.+.+.+....-..++..|++.++++..+ .+..++....+.+...
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~ 71 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIR 71 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHH
Confidence 4677777665555567888898888876655 4666666555444443
No 448
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=32.70 E-value=2.1e+02 Score=21.98 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=27.5
Q ss_pred HHhhhcCCCEEEEecCCCh-----hHHHHHHHHHhc-----CCCceEEEeccccc
Q 034165 4 VGRLASQKAVVIFSKSSCC-----MCHAIKRLFYDQ-----GVSPAIYELDEDAR 48 (102)
Q Consensus 4 l~~~~~~~~v~vy~~~~Cp-----~C~~~~~~l~~~-----~~~~~~~~id~~~~ 48 (102)
++.+-++-.|.+|.++.-| +=..++.+|+++ ++.++++|-..+++
T Consensus 43 L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~ 97 (552)
T TIGR03521 43 VKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEED 97 (552)
T ss_pred HHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcch
Confidence 4444444567778776644 346788888665 45666666555444
No 449
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=32.62 E-value=30 Score=22.86 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=28.2
Q ss_pred CCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 36 VSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 36 ~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
+-+..+.+|-.+....+.+.+.. ...+.+=.|+.+|--++||+-
T Consensus 37 v~~~~itvdG~DaT~~i~~m~~~-~~r~~i~~v~LdGit~agFNi 80 (187)
T PF01949_consen 37 VAFGRITVDGMDATEAIIEMVKR-LFRPDIRVVMLDGITFAGFNI 80 (187)
T ss_dssp EEEEEE-TT-S-HHHHHHHHHCC-TTTTTEEEEEESSSEETTTEE
T ss_pred EEEEEEEECCchHHHHHHHHHHh-cccCcceEEEECCEeEEeeEE
Confidence 34566777766666665555544 334667788999999999974
No 450
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=32.50 E-value=72 Score=19.76 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=18.1
Q ss_pred CCEEEEec-CCChhHHHHHHHHHh
Q 034165 11 KAVVIFSK-SSCCMCHAIKRLFYD 33 (102)
Q Consensus 11 ~~v~vy~~-~~Cp~C~~~~~~l~~ 33 (102)
..|.+|+. +-|+.|..+..-|.+
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~ 120 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKK 120 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHH
Confidence 46889987 689999987776654
No 451
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=32.35 E-value=1.5e+02 Score=21.91 Aligned_cols=38 Identities=8% Similarity=0.196 Sum_probs=28.0
Q ss_pred CCCEEEEecCC---------ChhHHHHHHHHHhcCCCceEEEecccc
Q 034165 10 QKAVVIFSKSS---------CCMCHAIKRLFYDQGVSPAIYELDEDA 47 (102)
Q Consensus 10 ~~~v~vy~~~~---------Cp~C~~~~~~l~~~~~~~~~~~id~~~ 47 (102)
+.+|+||..+. --|=+.+|.+|...|++|++++=...-
T Consensus 67 PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~rqG 113 (382)
T PF11711_consen 67 PRKLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGRRQG 113 (382)
T ss_pred CceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEecccccc
Confidence 34799999853 224457888888999999998766543
No 452
>KOG2869 consensus Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis]
Probab=32.29 E-value=79 Score=23.09 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=50.1
Q ss_pred EecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcCchHHHHH
Q 034165 16 FSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLK 95 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g~L~~~L~ 95 (102)
..-.+|.|-+...++|+...+.-..-|+....+-+++-+.+..+... .++.+-|..++....+.|.++.+|-
T Consensus 242 ~~h~ssg~~hslnevL~dp~v~~~l~dtK~~~EvkalddF~~~l~~~--------~drA~yG~khV~~A~e~~AI~tLLi 313 (379)
T KOG2869|consen 242 LVHASSGYKHSLNEVLKDPAVASKLQDTKAAKEVKALDDFYVMLSKD--------PDRACYGPKHVEKANEYGAIETLLI 313 (379)
T ss_pred EEecCCchHHHHHHHhcChHHHHHhhchhhHHHHHHHHHHHHHhccC--------ccccccCHHHHHHHHhhcchhheeh
Confidence 34467899999999998877665555554444444444444443321 2466778899999999999988875
Q ss_pred hcCc
Q 034165 96 DAGA 99 (102)
Q Consensus 96 ~~g~ 99 (102)
-.++
T Consensus 314 tD~l 317 (379)
T KOG2869|consen 314 TDEL 317 (379)
T ss_pred hhhh
Confidence 4443
No 453
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=32.24 E-value=1.3e+02 Score=18.92 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=23.1
Q ss_pred hHHHhhhcCCCEEEEecCC--ChhHHHHHHHHHhc
Q 034165 2 DRVGRLASQKAVVIFSKSS--CCMCHAIKRLFYDQ 34 (102)
Q Consensus 2 ~~l~~~~~~~~v~vy~~~~--Cp~C~~~~~~l~~~ 34 (102)
+.+.+.+.....++|++|- -...-..|.+|+..
T Consensus 57 ~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~ 91 (171)
T TIGR03567 57 KAATAQVAQADGVVVATPVYKASYSGVLKALLDLL 91 (171)
T ss_pred HHHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhC
Confidence 3456677778888888883 44556778787655
No 454
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=32.15 E-value=40 Score=19.40 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=10.2
Q ss_pred CccEEEECCeEee
Q 034165 64 SVPAVFIGGKFVG 76 (102)
Q Consensus 64 ~vP~vfv~g~~ig 76 (102)
-.|+|+|+|+.+-
T Consensus 39 d~p~V~V~Gr~~~ 51 (86)
T PF11521_consen 39 DDPTVMVAGRPYP 51 (86)
T ss_dssp SS-EEEETTEEEE
T ss_pred cCceEEECCEEee
Confidence 4899999999875
No 455
>COG4727 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.09 E-value=37 Score=23.46 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEee
Q 034165 24 CHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVG 76 (102)
Q Consensus 24 C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ig 76 (102)
-.++.++|...+-....++++... +++....+|.++-++.+.+
T Consensus 195 Rn~aqrWLr~~~Y~Ps~v~~~~~~----------r~gA~~fvpnv~tdDhP~~ 237 (287)
T COG4727 195 RNRAQRWLRQASYAPSPVDIDSHA----------RMGASTFVPNVHTDDHPEA 237 (287)
T ss_pred hHHHHHHHHHhcCCCCccccchHh----------hhccceeccccccCCCcHH
Confidence 357888888887777888887442 3456678999999887654
No 456
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=32.02 E-value=1.4e+02 Score=18.93 Aligned_cols=42 Identities=5% Similarity=0.184 Sum_probs=31.5
Q ss_pred hHHHhhhcCC-CEEEEecCCCh--hHHHHHHHHHhcCCCceEEEecc
Q 034165 2 DRVGRLASQK-AVVIFSKSSCC--MCHAIKRLFYDQGVSPAIYELDE 45 (102)
Q Consensus 2 ~~l~~~~~~~-~v~vy~~~~Cp--~C~~~~~~l~~~~~~~~~~~id~ 45 (102)
+.+.+.++.. .|.+.+.+.-| .+..+.++|.+.| |+++.|..
T Consensus 7 ~~i~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~G--Y~ViPVNP 51 (140)
T COG1832 7 EDIAEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKG--YRVIPVNP 51 (140)
T ss_pred HHHHHHHHhCceEEEEecCCCCCccHHHHHHHHHHCC--CEEEeeCc
Confidence 3456666654 58888888776 6789999999998 77777764
No 457
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=31.94 E-value=1.6e+02 Score=19.58 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=33.8
Q ss_pred CCEEEEecCC---ChhHHHHHHHHHhcCCC-ceEEEecccc--chHHHHHHHHhhCCCCCccEEEECC
Q 034165 11 KAVVIFSKSS---CCMCHAIKRLFYDQGVS-PAIYELDEDA--RGKEMEWALVRLGCNPSVPAVFIGG 72 (102)
Q Consensus 11 ~~v~vy~~~~---Cp~C~~~~~~l~~~~~~-~~~~~id~~~--~~~~~~~~l~~~~~~~~vP~vfv~g 72 (102)
.+|.+.-... +.+|......|+++|.. ...+.++..+ ...++.+.+.. ...||+.|
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~------ad~I~~~G 91 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRD------ADGIFFTG 91 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHh------CCEEEEeC
Confidence 3566655443 78899999999999985 5666665321 22333334433 34666655
No 458
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.93 E-value=55 Score=17.70 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=14.5
Q ss_pred HhhhcCCCEEEEecCCChhHHHH
Q 034165 5 GRLASQKAVVIFSKSSCCMCHAI 27 (102)
Q Consensus 5 ~~~~~~~~v~vy~~~~Cp~C~~~ 27 (102)
..-++..+|-.|. ||.|+.-
T Consensus 21 tKrLrN~PIrtym---C~eC~~R 40 (68)
T COG4896 21 TKRLRNKPIRTYM---CPECEHR 40 (68)
T ss_pred HHHhhCCCceeEe---chhhHhh
Confidence 3456677888888 8888643
No 459
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=31.86 E-value=1.9e+02 Score=20.66 Aligned_cols=68 Identities=10% Similarity=0.186 Sum_probs=40.2
Q ss_pred CCEEEEecC---CChhHHHHHHHHHhcCCCceEE-EeccccchHHHHHHHHhhCCCCCccEEEECCeEeecc
Q 034165 11 KAVVIFSKS---SCCMCHAIKRLFYDQGVSPAIY-ELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSA 78 (102)
Q Consensus 11 ~~v~vy~~~---~Cp~C~~~~~~l~~~~~~~~~~-~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~ 78 (102)
.++.+.+.+ ..++..++...|++.++++..+ .+..++....+.+.+........=-.|-|+|--+.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~ 95 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDT 95 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHH
Confidence 355555543 2478889999999988887755 4666777666655555442211122455666433333
No 460
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=31.79 E-value=1.9e+02 Score=20.57 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=42.7
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhh-CC-CCCccEEEECCeEeeccHHHHHHHHcC
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRL-GC-NPSVPAVFIGGKFVGSANTVMTLQLNG 88 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~-~~-~~~vP~vfv~g~~igg~~~l~~~~~~g 88 (102)
+|++|-..+-.-+..+..+|...|.+ ...++- ...+++...... .. ....+.+.++|....|.+++.+..+++
T Consensus 76 ~vvvyC~~gG~RS~~aa~~L~~~G~~--v~~L~G--G~~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~ 150 (311)
T TIGR03167 76 QPLLYCWRGGMRSGSLAWLLAQIGFR--VPRLEG--GYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANA 150 (311)
T ss_pred cEEEEECCCChHHHHHHHHHHHcCCC--EEEecC--hHHHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcC
Confidence 48888755556788999999999974 444442 122233232222 11 123344457787777888776655444
No 461
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.73 E-value=78 Score=16.05 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=13.7
Q ss_pred cCCChhHH-HHHHHHHhc-CCC
Q 034165 18 KSSCCMCH-AIKRLFYDQ-GVS 37 (102)
Q Consensus 18 ~~~Cp~C~-~~~~~l~~~-~~~ 37 (102)
.=.|+.|. ++++.|.+. |+.
T Consensus 6 ~m~C~~C~~~v~~~l~~~~GV~ 27 (62)
T PF00403_consen 6 GMTCEGCAKKVEKALSKLPGVK 27 (62)
T ss_dssp STTSHHHHHHHHHHHHTSTTEE
T ss_pred CcccHHHHHHHHHHHhcCCCCc
Confidence 35799995 677777665 553
No 462
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=31.68 E-value=1.4e+02 Score=20.03 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=23.4
Q ss_pred chHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcC
Q 034165 48 RGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNG 88 (102)
Q Consensus 48 ~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g 88 (102)
++-+++..|...+ .++|.||+-|. |+..-..+.-+.|
T Consensus 62 sGlelq~~L~~~~--~~~PVIfiTGh--gDIpmaV~AmK~G 98 (202)
T COG4566 62 SGLELQDRLAERG--IRLPVIFLTGH--GDIPMAVQAMKAG 98 (202)
T ss_pred chHHHHHHHHhcC--CCCCEEEEeCC--CChHHHHHHHHcc
Confidence 3466888887765 67999999884 3333333333444
No 463
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=31.40 E-value=39 Score=24.65 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=10.5
Q ss_pred CCCEEEEecCCChhHH
Q 034165 10 QKAVVIFSKSSCCMCH 25 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~ 25 (102)
+..|.+.+.|+||-|.
T Consensus 46 p~~I~lisGPGCPVCV 61 (355)
T PF01924_consen 46 PENIELISGPGCPVCV 61 (355)
T ss_dssp -TTEEEEE-S--TTTT
T ss_pred CCCcEEecCCCCccEE
Confidence 3459999999999996
No 464
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit. This model represents the carbon-monoxide dehydrogenase catalytic subunit. This protein is related to prismane (also called hybrid cluster protein), a complex whose activity is not yet fully described; the two share similar sets of ligands to unusual metal-containing clusters.
Probab=31.39 E-value=57 Score=25.68 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=29.0
Q ss_pred ccEEEECCeEeeccHHHHHHHHcCchHHHHHhcCcc
Q 034165 65 VPAVFIGGKFVGSANTVMTLQLNGSLKKLLKDAGAI 100 (102)
Q Consensus 65 vP~vfv~g~~igg~~~l~~~~~~g~L~~~L~~~g~~ 100 (102)
.|.|.|.|.-.--+..+.+..++.+|++.++++|+.
T Consensus 245 ~vnIlV~GH~p~l~~~iv~~~~~~el~~~ak~~Gak 280 (621)
T TIGR01702 245 YVNIVVNGHQPLLSEILCEAARDEDIQDEAKAAGAK 280 (621)
T ss_pred CcEEEEECCCchHHHHHHHHhhchhHHHHHHHcCCC
Confidence 566667776666677788888889999999999986
No 465
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=31.27 E-value=1.6e+02 Score=19.42 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=42.6
Q ss_pred CEEEEecCC---ChhHHHHHHHHHhc-CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHc
Q 034165 12 AVVIFSKSS---CCMCHAIKRLFYDQ-GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLN 87 (102)
Q Consensus 12 ~v~vy~~~~---Cp~C~~~~~~l~~~-~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~ 87 (102)
+|.+..+.. =.+...+.+.|++. |.+...+++...++ ..+.+.. .=.||+.| |....+.+..+.
T Consensus 33 ~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~---~~~~l~~------ad~I~l~G---G~~~~~~~~l~~ 100 (212)
T cd03146 33 KVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTED---PLDALLE------ADVIYVGG---GNTFNLLAQWRE 100 (212)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCccc---HHHHHhc------CCEEEECC---chHHHHHHHHHH
Confidence 354444432 34677888899999 88777666543222 2224432 33788877 555554444444
Q ss_pred CchHHHHHhc
Q 034165 88 GSLKKLLKDA 97 (102)
Q Consensus 88 g~L~~~L~~~ 97 (102)
--|.+.|++.
T Consensus 101 ~~l~~~l~~~ 110 (212)
T cd03146 101 HGLDAILKAA 110 (212)
T ss_pred cCHHHHHHHH
Confidence 4577777653
No 466
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=31.05 E-value=43 Score=19.90 Aligned_cols=16 Identities=25% Similarity=0.731 Sum_probs=13.4
Q ss_pred CCccEEEECCeEeecc
Q 034165 63 PSVPAVFIGGKFVGSA 78 (102)
Q Consensus 63 ~~vP~vfv~g~~igg~ 78 (102)
..-|.|+|||+.+|..
T Consensus 40 ~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 40 AVKPDVYVDGELIGEL 55 (117)
T ss_pred cccceEEECCEEEEEe
Confidence 4578999999999864
No 467
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=30.59 E-value=59 Score=20.23 Aligned_cols=19 Identities=21% Similarity=0.573 Sum_probs=15.4
Q ss_pred CCCCccEEEECCeEeeccH
Q 034165 61 CNPSVPAVFIGGKFVGSAN 79 (102)
Q Consensus 61 ~~~~vP~vfv~g~~igg~~ 79 (102)
....-|.+.|||++.+..+
T Consensus 115 ~C~~aP~v~V~~~~y~~vt 133 (145)
T PF01257_consen 115 ACDQAPVVMVDGEWYGNVT 133 (145)
T ss_dssp SGGGSSEEEECCCEEESSS
T ss_pred ccCCCCEEEECCEEECCCC
Confidence 3356899999999998776
No 468
>PF04352 ProQ: ProQ/FINO family; InterPro: IPR016103 This entry represents a structural domain consisting of six helices in an irregular non-globular array; it also contains two small beta-hairpins. This domain is found in the RNA-binding fertility inhibitor FinO that represses the conjugative transfer of F-like plasmids in Escherichia coli. FinO blocks the translation of TraJ, a positive activator of transcription of gene thereby protecting it from degradation, and catalyses FinP-TraJ mRNA hybridization. Interactions between these two RNAs are predicted to block the TraJ ribosomal binding site. FinO is largely helical, binds to its highest affinity binding site within FinP as a monomer, and contains two distinct RNA binding regions []. This entry also includes ProQ, which is required for full activation of the osmoprotectant transporter ProP in Escherichia coli [].; PDB: 3MW6_C 1DVO_A.
Probab=30.48 E-value=1.3e+02 Score=18.06 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=27.6
Q ss_pred CCccEEEECCeEeeccHHHHHHHHcCchHHHHHhc
Q 034165 63 PSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLKDA 97 (102)
Q Consensus 63 ~~vP~vfv~g~~igg~~~l~~~~~~g~L~~~L~~~ 97 (102)
...+.+-++|+++|-.++-.+.+....|.+..+..
T Consensus 72 ~g~~R~dL~G~p~g~Vt~e~~~~A~~~l~~~~~~~ 106 (114)
T PF04352_consen 72 EGAPRYDLDGQPVGEVTEEHAEHARERLKERKKKR 106 (114)
T ss_dssp CTSEEE-TTS-EEEEE-HHHHHHHHCCHHHHHHHH
T ss_pred CCCceECCCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998877654
No 469
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=30.48 E-value=32 Score=19.91 Aligned_cols=27 Identities=7% Similarity=-0.094 Sum_probs=15.4
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCc
Q 034165 12 AVVIFSKSSCCMCHAIKRLFYDQGVSP 38 (102)
Q Consensus 12 ~v~vy~~~~Cp~C~~~~~~l~~~~~~~ 38 (102)
++..|..|...+-..+.+.+.+.|..|
T Consensus 96 ~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 96 PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 455566666666666666666666544
No 470
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=30.29 E-value=87 Score=17.44 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCC-ceEEEeccccchHHHHHHHHhhCCCCCccEEEECC
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYDQGVS-PAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGG 72 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~~~~~-~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g 72 (102)
..+|++.-+..|++-.+++..-+. |.. .-+++ ........ ..........+|.++|..
T Consensus 33 ~gkIvlv~rg~~~~~~k~~~a~~~-GA~gvIi~~-~~~~~~~~---~~~~~~~~~~iP~v~I~~ 91 (101)
T PF02225_consen 33 KGKIVLVERGSCSFDDKVRNAQKA-GAKGVIIYN-PPPNNGSM---IDSEDPDPIDIPVVFISY 91 (101)
T ss_dssp TTSEEEEESTSSCHHHHHHHHHHT-TESEEEEE--TSCSCTTT---TCEBTTTSTBSEEEEE-H
T ss_pred cceEEEEecCCCCHHHHHHHHHHc-CCEEEEEEe-CCccccCc---ccccCCCCcEEEEEEeCH
Confidence 347888888999998888666644 543 45555 11111000 001113346799999964
No 471
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=30.20 E-value=87 Score=23.56 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=28.1
Q ss_pred hhhcCCCEEEEec-----CCChhHHHHHHHHHhcCCCceEEEe
Q 034165 6 RLASQKAVVIFSK-----SSCCMCHAIKRLFYDQGVSPAIYEL 43 (102)
Q Consensus 6 ~~~~~~~v~vy~~-----~~Cp~C~~~~~~l~~~~~~~~~~~i 43 (102)
.+...+.|++=.+ ++|-||.-++..|+..|.+.+.+++
T Consensus 212 AlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~ 254 (583)
T KOG2454|consen 212 ALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQV 254 (583)
T ss_pred HHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhhe
Confidence 3444556666444 6799999999999999988766544
No 472
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=30.10 E-value=1.9e+02 Score=20.70 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=39.4
Q ss_pred CEEEEec-CCChhHHHHHHHHHhcCCCceEEEecccc--chHHHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 12 AVVIFSK-SSCCMCHAIKRLFYDQGVSPAIYELDEDA--RGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 12 ~v~vy~~-~~Cp~C~~~~~~l~~~~~~~~~~~id~~~--~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
.+++.+. +....|.+|.+.|++.|++.+++|+-.-. +...+.+.+++.. .=.++-++...||+..
T Consensus 203 ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~----~vv~vEE~~~~gGlG~ 270 (327)
T CHL00144 203 DITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTH----KVLIVEECMKTGGIGA 270 (327)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhC----cEEEEECCCCCCCHHH
Confidence 4444333 45778899999999999999999886532 2223443433322 1222335556688765
No 473
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=30.08 E-value=2.1e+02 Score=21.21 Aligned_cols=9 Identities=44% Similarity=0.667 Sum_probs=4.8
Q ss_pred ccEEEECCe
Q 034165 65 VPAVFIGGK 73 (102)
Q Consensus 65 vP~vfv~g~ 73 (102)
+|.+.+.+.
T Consensus 382 IP~L~iE~D 390 (413)
T TIGR02260 382 KPAAFIETD 390 (413)
T ss_pred CCEEEEEcC
Confidence 555555544
No 474
>PRK04016 DNA-directed RNA polymerase subunit N; Provisional
Probab=30.06 E-value=67 Score=17.34 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=22.1
Q ss_pred EECCeEeecc-HHHHHHHHc-CchHHHHHhcCccc
Q 034165 69 FIGGKFVGSA-NTVMTLQLN-GSLKKLLKDAGAIW 101 (102)
Q Consensus 69 fv~g~~igg~-~~l~~~~~~-g~L~~~L~~~g~~~ 101 (102)
|--|+.||.. ++-.++.++ ....+.|.+.|..|
T Consensus 8 FTCGkvi~~~we~y~~~~~~g~~~~~vLd~Lg~~R 42 (62)
T PRK04016 8 FTCGKVIAEKWEEFKERVEAGEDPGKVLDDLGVKR 42 (62)
T ss_pred cCCCCChHHHHHHHHHHHHcCCCHHHHHHHcCCcc
Confidence 6678888763 334444433 66778889888876
No 475
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=30.02 E-value=1.7e+02 Score=19.49 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCC-ceEEEeccccch-HHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcC
Q 034165 26 AIKRLFYDQGVS-PAIYELDEDARG-KEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNG 88 (102)
Q Consensus 26 ~~~~~l~~~~~~-~~~~~id~~~~~-~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g 88 (102)
...+.|.+.|++ +...|++..... ....+.+.+......+|.+..+| |...+++.++.+.|
T Consensus 31 ~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GG--I~s~~d~~~~l~~G 93 (243)
T cd04731 31 ELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGG--IRSLEDARRLLRAG 93 (243)
T ss_pred HHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCC--CCCHHHHHHHHHcC
Confidence 455556777876 456677643111 11112233332224589888887 44666666665544
No 476
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=29.96 E-value=44 Score=17.68 Aligned_cols=11 Identities=36% Similarity=1.144 Sum_probs=9.6
Q ss_pred EEEECCeEeec
Q 034165 67 AVFIGGKFVGS 77 (102)
Q Consensus 67 ~vfv~g~~igg 77 (102)
.||+||+++|.
T Consensus 14 ~V~vdg~~~G~ 24 (71)
T PF08308_consen 14 EVYVDGKYIGT 24 (71)
T ss_pred EEEECCEEecc
Confidence 78999999984
No 477
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=29.92 E-value=36 Score=22.70 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=30.3
Q ss_pred EEEEec-----CCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEe--eccHHHHHH
Q 034165 13 VVIFSK-----SSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFV--GSANTVMTL 84 (102)
Q Consensus 13 v~vy~~-----~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~i--gg~~~l~~~ 84 (102)
-.+|.+ =+|++|.....+=.+.+..+....++ ++-+.+...+. ...=+++-+|++. .+..++.++
T Consensus 23 ~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~------~I~~~i~~~~~-~~~~V~lTGGEP~~~~~l~~Ll~~ 94 (212)
T COG0602 23 PSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSAD------EILADIKSLGY-KARGVSLTGGEPLLQPNLLELLEL 94 (212)
T ss_pred eeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHH------HHHHHHHhcCC-CcceEEEeCCcCCCcccHHHHHHH
Confidence 345555 25889976555332222333332222 33334444322 1123556788883 244444443
No 478
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=29.77 E-value=1.2e+02 Score=17.81 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHhcCCCceEEEecc-----------------ccchHHHHHHHHhhCCCCCccEEEECCeEee
Q 034165 22 CMCHAIKRLFYDQGVSPAIYELDE-----------------DARGKEMEWALVRLGCNPSVPAVFIGGKFVG 76 (102)
Q Consensus 22 p~C~~~~~~l~~~~~~~~~~~id~-----------------~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ig 76 (102)
-...++++.+++.|++++..-... .|.-+...+.+++......+|...++....|
T Consensus 16 lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEeCHHHcC
Confidence 456788888999998865522111 1222333445555555567999999987666
No 479
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=29.73 E-value=1e+02 Score=16.84 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=16.3
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCC
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYDQGVS 37 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~~~~~ 37 (102)
..+|++|.. .+..+..+...|++.|.+
T Consensus 56 ~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 56 DRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 345666654 556666666667766653
No 480
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.71 E-value=2.1e+02 Score=20.34 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=39.2
Q ss_pred CEEEEecCCCh----hHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 12 AVVIFSKSSCC----MCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~vy~~~~Cp----~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
.+.++....-| |-+.-.+..++.|++++.++++.+....++.+.+.+....+.+=-|++
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILV 95 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 34444444444 444555566888999999999987777777888888766554444444
No 481
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=29.70 E-value=1.3e+02 Score=17.92 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=23.2
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCCceEEEec
Q 034165 10 QKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELD 44 (102)
Q Consensus 10 ~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id 44 (102)
..+|++|-......+..+..+|+..|.+ ...++
T Consensus 86 ~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~ 118 (128)
T cd01520 86 DPKLLIYCARGGMRSQSLAWLLESLGID--VPLLE 118 (128)
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeC
Confidence 4568888866666677777888888874 44554
No 482
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=29.60 E-value=2.3e+02 Score=20.77 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=32.2
Q ss_pred CCEEEEecCC---ChhHHHHHHHHHhcCCCceEE-EeccccchHHHHHHHHh
Q 034165 11 KAVVIFSKSS---CCMCHAIKRLFYDQGVSPAIY-ELDEDARGKEMEWALVR 58 (102)
Q Consensus 11 ~~v~vy~~~~---Cp~C~~~~~~l~~~~~~~~~~-~id~~~~~~~~~~~l~~ 58 (102)
.++.+++.+. .+...++...|++.|+++... ++..++....+.+.+..
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~ 101 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQ 101 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHH
Confidence 3566666543 567789999999999988766 45556665555554443
No 483
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=29.57 E-value=2.2e+02 Score=20.61 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=31.4
Q ss_pred CCEEEEecCC---ChhHHHHHHHHHhcCCCceEE-EeccccchHHHHHHHH
Q 034165 11 KAVVIFSKSS---CCMCHAIKRLFYDQGVSPAIY-ELDEDARGKEMEWALV 57 (102)
Q Consensus 11 ~~v~vy~~~~---Cp~C~~~~~~l~~~~~~~~~~-~id~~~~~~~~~~~l~ 57 (102)
.++.+.+.+. .+...+++..|++.++++..+ ++..++....+.+.+.
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~ 81 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVE 81 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHH
Confidence 4566665543 467889999999999988766 3665665555444443
No 484
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=29.32 E-value=2.3e+02 Score=21.48 Aligned_cols=65 Identities=9% Similarity=0.051 Sum_probs=40.7
Q ss_pred CEEEEec-CCChhHHHHHHHHHhcCCCceEEEecccc--chHHHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 12 AVVIFSK-SSCCMCHAIKRLFYDQGVSPAIYELDEDA--RGKEMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 12 ~v~vy~~-~~Cp~C~~~~~~l~~~~~~~~~~~id~~~--~~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
.+++++. .....|.++.+.|++.|++.+++|+-.-. +...+.+.+++.+. + .++-++...||+..
T Consensus 342 DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~---v-vtvEE~~~~gGlG~ 409 (464)
T PRK11892 342 DVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNR---L-VTVEEGWPQSGVGA 409 (464)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCe---E-EEEeCCCcCCcHHH
Confidence 4555443 45778889999999999999999886532 22234444433221 2 44445666777765
No 485
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=29.30 E-value=39 Score=18.75 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=27.9
Q ss_pred CCccEEEECCeEeeccHHHHHHHHcCchHHHHHhc
Q 034165 63 PSVPAVFIGGKFVGSANTVMTLQLNGSLKKLLKDA 97 (102)
Q Consensus 63 ~~vP~vfv~g~~igg~~~l~~~~~~g~L~~~L~~~ 97 (102)
...|.||+=+..-||.--..++.+...+.++|+.+
T Consensus 33 ~~~~~i~lyD~~~GG~G~~~~l~~~~~~~~ll~~A 67 (84)
T PF09369_consen 33 QGPPRIFLYDTVPGGAGYAERLFERERFEELLRRA 67 (84)
T ss_pred CCccEEEEEECCCCchhhHhhhcChhHHHHHHHHH
Confidence 56799999888888888888887766688888654
No 486
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=29.13 E-value=1.8e+02 Score=21.03 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=40.4
Q ss_pred CEEEEec-CCChhHHHHHHHHHhcCCCceEEEeccccc--hHHHHHHHHhhCCCCCccEEEECCeEeeccHH
Q 034165 12 AVVIFSK-SSCCMCHAIKRLFYDQGVSPAIYELDEDAR--GKEMEWALVRLGCNPSVPAVFIGGKFVGSANT 80 (102)
Q Consensus 12 ~v~vy~~-~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~--~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~ 80 (102)
.+++.+. +....|.++.+.|++.|++.+++|+-.-.. ...+.+.+++.. .+ .++-++...||+..
T Consensus 230 dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~---~v-vtvEE~~~~GGlGs 297 (356)
T PLN02683 230 DVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTN---RL-VTVEEGWPQHGVGA 297 (356)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcC---eE-EEEeCCCcCCCHHH
Confidence 4555443 456788888999999999999998865322 223443433322 12 44445666788866
No 487
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]
Probab=28.97 E-value=20 Score=23.19 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=24.9
Q ss_pred CCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEee
Q 034165 35 GVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVG 76 (102)
Q Consensus 35 ~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~ig 76 (102)
|+.|.-+++.-...++.+..-+...-| +-+|.|+|++.-|-
T Consensus 132 GvayDHVELnfY~NGKn~e~p~~gvRG-~vyPvvYVddsAIL 172 (197)
T KOG4030|consen 132 GVAYDHVELNFYVNGKNVEDPITGVRG-PVYPVVYVDDSAIL 172 (197)
T ss_pred EEEeeeEEEEEEEcCceeccccccccc-ceeeEEEeCCceEE
Confidence 455666666555555554434444444 67899999986653
No 488
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=28.76 E-value=1.7e+02 Score=19.55 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhcCCCceEEEeccccc--hHHHHHHHHhhCCCCCccEEEECCeEeeccHHHHHHHHcC
Q 034165 23 MCHAIKRLFYDQGVSPAIYELDEDAR--GKEMEWALVRLGCNPSVPAVFIGGKFVGSANTVMTLQLNG 88 (102)
Q Consensus 23 ~C~~~~~~l~~~~~~~~~~~id~~~~--~~~~~~~l~~~~~~~~vP~vfv~g~~igg~~~l~~~~~~g 88 (102)
....+...+...+..+-+.||+.+-. +..+ +.+++......+|.+.-+| ++..+++.++.+.|
T Consensus 142 ~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~-eli~~i~~~~~~pvia~GG--i~s~ed~~~l~~~G 206 (221)
T TIGR00734 142 SLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNL-ELLTKTLELSEHPVMLGGG--ISGVEDLELLKEMG 206 (221)
T ss_pred cHHHHHHHHHhcCCEEEEEECCccccCCCCCH-HHHHHHHhhCCCCEEEeCC--CCCHHHHHHHHHCC
Confidence 44556667777776545556664311 1111 1223333334689888877 56777776665543
No 489
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.72 E-value=1.5e+02 Score=20.46 Aligned_cols=70 Identities=9% Similarity=-0.045 Sum_probs=37.1
Q ss_pred HhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEECCeEeec
Q 034165 5 GRLASQKAVVIFSKSSCCMCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIGGKFVGS 77 (102)
Q Consensus 5 ~~~~~~~~v~vy~~~~Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~g~~igg 77 (102)
+.+--.++|.+...+.|+.-.+..+-...-..+|-++|-|+........+.+.-. +.-=.+++|...+.|
T Consensus 119 k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Ll---r~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 119 KLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLL---RVGGVIVVDNVLWPG 188 (237)
T ss_pred HhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhc---ccccEEEEeccccCC
Confidence 3334456777777766655444444333334566677777665543333233221 122267777766666
No 490
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=28.71 E-value=2.1e+02 Score=20.18 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=25.1
Q ss_pred ChhHHHHHHHHHhcCCCceEEEeccccchHHHH
Q 034165 21 CCMCHAIKRLFYDQGVSPAIYELDEDARGKEME 53 (102)
Q Consensus 21 Cp~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~ 53 (102)
|-..+..+.+|+.++++...+....+.+.....
T Consensus 36 aEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~ 68 (275)
T COG0313 36 AEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLP 68 (275)
T ss_pred EeccHHHHHHHHHhCCCCceecccCCcHHHHHH
Confidence 778899999999999988877666555544433
No 491
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.59 E-value=2.1e+02 Score=20.16 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=39.7
Q ss_pred CEEEEecCCChhH----HHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEEC
Q 034165 12 AVVIFSKSSCCMC----HAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFIG 71 (102)
Q Consensus 12 ~v~vy~~~~Cp~C----~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv~ 71 (102)
+..+.....-|.. +.-.+..++.|++++.+++..+....++.+.+.+......+=-|++.
T Consensus 33 ~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq 96 (282)
T PRK14180 33 KLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQ 96 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEc
Confidence 4444444444444 34445568889999999999877777777888887665555445443
No 492
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=28.43 E-value=35 Score=22.27 Aligned_cols=23 Identities=4% Similarity=0.235 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCCCceEEEecc
Q 034165 23 MCHAIKRLFYDQGVSPAIYELDE 45 (102)
Q Consensus 23 ~C~~~~~~l~~~~~~~~~~~id~ 45 (102)
-..+++.+++++++..+.+|...
T Consensus 128 v~~~V~~F~k~~ki~lEi~dte~ 150 (196)
T KOG3363|consen 128 VRPSVRQFVKSHKIKLEIVDTEN 150 (196)
T ss_pred cCHHHHHHHHHhCcceEEecchh
Confidence 56789999999999998887663
No 493
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=28.43 E-value=54 Score=18.69 Aligned_cols=18 Identities=28% Similarity=0.693 Sum_probs=16.6
Q ss_pred CChhHHHHHHHHHhcCCC
Q 034165 20 SCCMCHAIKRLFYDQGVS 37 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~~~ 37 (102)
.|+-|+.|-.+|.+.|+.
T Consensus 28 CC~GC~~V~~~i~~~gL~ 45 (88)
T PF12156_consen 28 CCPGCQAVYQLIHENGLE 45 (88)
T ss_pred ccHHHHHHHHHHHHcchH
Confidence 699999999999999985
No 494
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=28.34 E-value=2.7e+02 Score=21.24 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=17.0
Q ss_pred eccHHHHHHHHcCchHHHHHhcCccc
Q 034165 76 GSANTVMTLQLNGSLKKLLKDAGAIW 101 (102)
Q Consensus 76 gg~~~l~~~~~~g~L~~~L~~~g~~~ 101 (102)
|--+-..+|..+|.|++++ +.|..|
T Consensus 191 GhGd~y~aL~~sG~Ld~l~-~~G~ey 215 (469)
T PLN02474 191 GHGDVFPSLMNSGKLDALL-SQGKEY 215 (469)
T ss_pred CCchHHHHHHhCChHHHHH-hcCCEE
Confidence 4445567899999999855 445444
No 495
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.32 E-value=2.2e+02 Score=20.14 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=39.1
Q ss_pred CEEEEecCCCh----hHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 12 AVVIFSKSSCC----MCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~vy~~~~Cp----~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
++.+..-..-| |-+.-.+..++.|++++.++++.+....++.+.+.+......+=-|.+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlv 96 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILV 96 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEE
Confidence 34444444444 444555566889999999999987777778888888766555444444
No 496
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.23 E-value=2.2e+02 Score=20.24 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 23 MCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 23 ~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
|-+...+..++.|++++.+++..+....++.+.+.+.+..+.+=-|.+
T Consensus 48 Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (297)
T PRK14167 48 YVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILV 95 (297)
T ss_pred HHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 444555566888999999999877777778888888866655544544
No 497
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=28.16 E-value=1.4e+02 Score=18.27 Aligned_cols=21 Identities=19% Similarity=0.437 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCceEEEecc
Q 034165 25 HAIKRLFYDQGVSPAIYELDE 45 (102)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~id~ 45 (102)
.++..+|++.+++|+.+....
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~ 22 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPE 22 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCC
Confidence 467888999999999887774
No 498
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.07 E-value=2.2e+02 Score=20.11 Aligned_cols=59 Identities=15% Similarity=0.292 Sum_probs=39.2
Q ss_pred CEEEEecCCCh----hHHHHHHHHHhcCCCceEEEeccccchHHHHHHHHhhCCCCCccEEEE
Q 034165 12 AVVIFSKSSCC----MCHAIKRLFYDQGVSPAIYELDEDARGKEMEWALVRLGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~vy~~~~Cp----~C~~~~~~l~~~~~~~~~~~id~~~~~~~~~~~l~~~~~~~~vP~vfv 70 (102)
++.++.-..-| |-+...+..++.|+.++.+++..+....++.+.+.+.+....+=-|++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 96 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILV 96 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 34444444444 344555566888999999999988777778888888766555444444
No 499
>PF09002 DUF1887: Domain of unknown function (DUF1887); InterPro: IPR015093 This entry represents a set of hypothetical bacterial and archaeal proteins. ; PDB: 1XMX_A.
Probab=27.95 E-value=1.7e+02 Score=21.31 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=21.5
Q ss_pred hcCCCEEEEecCCChhH-HHHHHHHHhcCCCceEEEeccccchH
Q 034165 8 ASQKAVVIFSKSSCCMC-HAIKRLFYDQGVSPAIYELDEDARGK 50 (102)
Q Consensus 8 ~~~~~v~vy~~~~Cp~C-~~~~~~l~~~~~~~~~~~id~~~~~~ 50 (102)
.++.++++.+++.=... .+.+.+|+..++.++.++++...+..
T Consensus 25 ~~p~kvvlI~t~~~~~~~~~L~~~l~~~~~~~e~~~i~d~~d~~ 68 (381)
T PF09002_consen 25 FKPDKVVLIGTEDMKEKAERLKSVLKQRGIKVEFFEIPDEYDIE 68 (381)
T ss_dssp ----EEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEE--SSS-HH
T ss_pred CCCCEEEEEECchHHHHHHHHHHHHHhcCCCceEEecCChhhHH
Confidence 34455666555443322 46777788889988888776444443
No 500
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.93 E-value=1.2e+02 Score=21.10 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=27.4
Q ss_pred HHHhhhcCCCEEEEecCCC-hhHHHHHHHHHhcCCCce
Q 034165 3 RVGRLASQKAVVIFSKSSC-CMCHAIKRLFYDQGVSPA 39 (102)
Q Consensus 3 ~l~~~~~~~~v~vy~~~~C-p~C~~~~~~l~~~~~~~~ 39 (102)
..+++++..+|.++..+.| +.|..+..++++.++++-
T Consensus 61 ~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i 98 (347)
T cd06340 61 EAERLITEEGVVALVGAYQSAVTLAASQVAERYGVPFV 98 (347)
T ss_pred HHHHHhccCCceEEecccchHhHHHHHHHHHHhCCCEE
Confidence 4667788877777666665 567888899988887753
Done!