BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034167
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 129 bits (323), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8 TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
R ++ + S +PE + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPP
Sbjct: 28 NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 87
Query: 68 TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 88 TAALMSAIYQEHKDKDGFLYVTYSGENTFG 117
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 129 bits (323), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8 TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
R ++ + S +PE + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPP
Sbjct: 30 NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 89
Query: 68 TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 90 TAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 129 bits (323), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8 TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
R ++ + S +PE + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPP
Sbjct: 27 NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 86
Query: 68 TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 87 TAALMSAIYQEHKDKDGFLYVTYSGENTFG 116
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 129 bits (323), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8 TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
R ++ + S +PE + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPP
Sbjct: 30 NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 89
Query: 68 TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 90 TAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 129 bits (323), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8 TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
R ++ + S +PE + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPP
Sbjct: 29 NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 88
Query: 68 TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 89 TAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 128 bits (322), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8 TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
R ++ + S +PE + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPP
Sbjct: 29 NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 88
Query: 68 TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 89 TAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 62/78 (79%)
Query: 20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
S + + + +YLVP+D+TV QF+++IRKRI+L +EKAIF+FVD +P + M +YE++
Sbjct: 39 SQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKE 98
Query: 80 KDEDGFLYVTYSGENTFG 97
KDEDGFLYV YSGENTFG
Sbjct: 99 KDEDGFLYVAYSGENTFG 116
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 59/79 (74%)
Query: 20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
+ L + + +YLVP+DLTVGQF ++IRKRI L E A+F FV+NV+PPT A M ++Y+E
Sbjct: 47 ARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEH 106
Query: 80 KDEDGFLYVTYSGENTFGS 98
DED FLY+ +S EN +G+
Sbjct: 107 HDEDFFLYIAFSDENVYGN 125
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 15 YTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 74
Y + + L C ++LVP+DLTVGQFV V+RKR++L AE A+F++ ++ + P+ A M+
Sbjct: 40 YNSDIGELDRC---KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD 96
Query: 75 IYEEKKDEDGFLYVTYSGENTFG 97
IY + KDEDGFLY+ YSGE TFG
Sbjct: 97 IYSKYKDEDGFLYMKYSGEATFG 119
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 56/74 (75%)
Query: 24 ECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDED 83
+ + +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M +Y+E +ED
Sbjct: 45 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEED 104
Query: 84 GFLYVTYSGENTFG 97
FLY+ YS E+ +G
Sbjct: 105 FFLYIAYSDESVYG 118
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
Length = 117
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
+ + + + +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M +Y+E
Sbjct: 39 ARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEH 98
Query: 80 KDEDGFLYVTYSGENTFG 97
+ED FLY+ YS E+ +G
Sbjct: 99 HEEDFFLYIAYSDESVYG 116
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
+ + + + +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M +Y+E
Sbjct: 41 ARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEH 100
Query: 80 KDEDGFLYVTYSGENTFG 97
+ED FLY+ YS E+ +G
Sbjct: 101 HEEDFFLYIAYSDESVYG 118
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 55/75 (73%)
Query: 20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
+ +P+ + +YLVP+DLTVGQF ++IRKRI L E A+F FV+N +PPT A M +YE+
Sbjct: 43 ARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN 102
Query: 80 KDEDGFLYVTYSGEN 94
+ED FLYV YS E+
Sbjct: 103 HEEDYFLYVAYSDES 117
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
+ +P+ + +YLVP+DLTVGQF ++IRKRI L E A+F FV+N +PPT A M +YE+
Sbjct: 38 ARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN 97
Query: 80 KDEDGFLYVTYS 91
+ED FLYV YS
Sbjct: 98 HEEDYFLYVAYS 109
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|B Chain B, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|C Chain C, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
Length = 128
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 9/87 (10%)
Query: 20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSA---------EKAIFIFVDNVLPPTGA 70
S+LP E ++LVP ++ VG+F +++ + I SA E+ I++FV+N++P TG
Sbjct: 42 SNLPIIEKKKFLVPMNMLVGEFKFILHQHINQSAYGSNMKLFRERTIYLFVNNIVPKTGL 101
Query: 71 IMSAIYEEKKDEDGFLYVTYSGENTFG 97
+M +YE KDEDG+LY+ YS E++ G
Sbjct: 102 LMQDLYEMYKDEDGYLYMEYSSESSLG 128
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c
Length = 128
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 22 LPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKK 80
LP + ++LVP +LT+ QF+ +IR R+ L A +A ++ V+N L A M+ IY + K
Sbjct: 52 LPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYK 111
Query: 81 DEDGFLYVTYSGENTFG 97
DEDGF+Y+TY+ + TFG
Sbjct: 112 DEDGFVYMTYASQETFG 128
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 21 SLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEK 79
LP + ++LVP + + + + +IR+R++L+A +A F+ V+ + + +S +YE +
Sbjct: 48 QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESE 107
Query: 80 KDEDGFLYVTYSGENTFGSHIPV 102
KDEDGFLY+ Y+ + TFG + V
Sbjct: 108 KDEDGFLYMVYASQETFGMKLSV 130
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light
Chain-3
Length = 120
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEE 78
LP + ++LVP + + + + +IR+R++L+A +A F+ V+ + + +S +YE
Sbjct: 42 KQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYES 101
Query: 79 KKDEDGFLYVTYSGENTFG 97
+KDEDGFLY+ Y+ + TFG
Sbjct: 102 EKDEDGFLYMVYASQETFG 120
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 21 SLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEK 79
LP + ++LVP + + + + +IR+R++L+A +A F+ V+ + + +S +YE +
Sbjct: 48 QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESE 107
Query: 80 KDEDGFLYVTYSGENTFGS 98
+DEDGFLY+ Y+ + TFG+
Sbjct: 108 RDEDGFLYMVYASQETFGT 126
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 21 SLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEK 79
LP + ++LVP + + + + +IR+R++L+A +A F+ V+ + + +S +YE +
Sbjct: 44 QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESE 103
Query: 80 KDEDGFLYVTYSGENTFG 97
+DEDGFLY+ Y+ + TFG
Sbjct: 104 RDEDGFLYMVYASQETFG 121
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 21 SLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEK 79
LP + ++LVP + + + + +IR+R++L+A +A F+ V+ + + +S +YE +
Sbjct: 48 QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESE 107
Query: 80 KDEDGFLYVTYSGENTFG 97
+DEDGFLY+ Y+ + TFG
Sbjct: 108 RDEDGFLYMVYASQETFG 125
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEE 78
LP + ++LVP + + + V +IR+R++L+ +A F+ V+ + + ++ IYE+
Sbjct: 43 KQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQ 102
Query: 79 KKDEDGFLYVTYSGENTFG 97
+KDEDGFLY+ Y+ + TFG
Sbjct: 103 EKDEDGFLYMVYASQETFG 121
>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
pdb|4GDK|D Chain D, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
pdb|4GDL|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
Length = 91
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 33/79 (41%)
Query: 19 VSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEE 78
V P + ++ V T+ + I+K +KL A + +FI+V+ P+ E
Sbjct: 13 VGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYE 72
Query: 79 KKDEDGFLYVTYSGENTFG 97
DG L + Y +G
Sbjct: 73 CFGSDGKLVLHYCKSQAWG 91
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 67 PTGAIMSAIYEEKKDEDGFLYVTYSG 92
P GAI+ + +E +D+DGF ++G
Sbjct: 28 PEGAIIRILNKENQDDDGFWEGEFNG 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,007,903
Number of Sequences: 62578
Number of extensions: 103512
Number of successful extensions: 228
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 28
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)