Query 034167
Match_columns 102
No_of_seqs 104 out of 351
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:56:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m95_A Autophagy related prote 100.0 8.8E-41 3E-45 233.3 10.4 90 7-98 36-125 (125)
2 3rui_B Autophagy-related prote 100.0 1.4E-40 4.6E-45 230.3 11.2 89 7-97 30-118 (118)
3 3h9d_A ATG8, microtubule-assoc 100.0 1.6E-40 5.5E-45 230.2 10.1 89 7-97 31-119 (119)
4 2zjd_A Microtubule-associated 100.0 2.3E-39 8E-44 227.3 7.6 94 7-102 35-130 (130)
5 1eo6_A GATE-16, golgi-associat 100.0 1.8E-38 6.1E-43 218.9 10.5 90 7-98 28-117 (117)
6 4gdk_A Ubiquitin-like protein 100.0 5.3E-38 1.8E-42 208.8 10.5 87 9-97 4-91 (91)
7 3w1s_C Ubiquitin-like protein 100.0 1.4E-35 4.9E-40 197.2 9.7 86 7-97 5-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 4.9E-35 1.7E-39 196.1 9.2 84 9-97 12-96 (96)
9 2r2q_A Gamma-aminobutyric acid 100.0 8.9E-35 3.1E-39 198.4 10.4 84 7-92 27-110 (110)
10 4gdk_B Autophagy protein 5; pr 94.1 0.13 4.3E-06 39.3 6.4 37 56-92 235-271 (275)
11 3goe_A DNA repair protein RAD6 93.4 0.091 3.1E-06 33.8 3.8 49 26-74 20-68 (82)
12 3vqi_A ATG5; autophagy, E3-lik 93.1 0.077 2.6E-06 40.5 3.7 51 35-89 222-272 (274)
13 2dyo_A Autophagy protein 5; ub 91.7 0.16 5.4E-06 39.2 3.9 39 54-92 248-286 (297)
14 3a4r_A Nfatc2-interacting prot 88.9 1.6 5.4E-05 26.6 6.1 48 27-75 20-67 (79)
15 2uyz_B Small ubiquitin-related 88.1 1.8 6.1E-05 25.6 5.9 60 28-91 16-75 (79)
16 1wm3_A Ubiquitin-like protein 87.4 2.1 7.2E-05 25.4 5.9 49 26-75 12-60 (72)
17 2io0_B Small ubiquitin-related 86.6 2.5 8.5E-05 26.7 6.2 61 9-75 4-64 (91)
18 1oey_A P67-PHOX, neutrophil cy 84.9 3.2 0.00011 26.3 6.0 56 31-88 19-78 (83)
19 1wh3_A 59 kDa 2'-5'-oligoadeny 83.4 5.2 0.00018 23.8 6.3 60 29-92 21-80 (87)
20 2jxx_A Nfatc2-interacting prot 83.1 7.1 0.00024 25.1 7.8 48 27-75 38-85 (97)
21 2k8h_A Small ubiquitin protein 82.7 3.7 0.00013 26.9 5.8 48 27-75 38-85 (110)
22 3mtn_B UBA80, ubcep1, ubiquiti 82.6 2.3 7.8E-05 25.1 4.4 61 28-92 16-76 (85)
23 1wyw_B Ubiquitin-like protein 82.1 4.5 0.00015 25.2 5.9 60 28-91 34-93 (97)
24 3n3k_B Ubiquitin; hydrolase, p 81.5 2.2 7.5E-05 25.2 4.0 62 28-93 16-77 (85)
25 3a9j_A Ubiquitin; protein comp 81.2 2.9 9.8E-05 23.9 4.4 59 28-91 13-72 (76)
26 1wy8_A NP95-like ring finger p 80.5 4.5 0.00015 24.2 5.3 60 29-92 22-82 (89)
27 1ndd_A NEDD8, protein (ubiquit 80.5 3.4 0.00012 23.6 4.6 59 28-91 13-72 (76)
28 1uh6_A Ubiquitin-like 5; beta- 80.2 6.1 0.00021 25.6 6.1 60 28-91 41-100 (100)
29 2kvr_A Ubiquitin carboxyl-term 79.0 2.4 8.2E-05 28.6 4.0 54 28-81 58-119 (130)
30 2dzi_A Ubiquitin-like protein 77.7 4.9 0.00017 23.4 4.8 45 29-74 21-65 (81)
31 2hj8_A Interferon-induced 17 k 77.7 8.1 0.00028 23.3 5.9 61 29-93 18-78 (88)
32 4dwf_A HLA-B-associated transc 77.5 4.5 0.00015 24.4 4.6 59 29-92 19-77 (90)
33 2d07_B Ubiquitin-like protein 76.8 7.7 0.00026 24.2 5.7 60 10-75 17-76 (93)
34 2eke_C Ubiquitin-like protein 76.6 3.3 0.00011 27.1 4.0 49 26-75 41-89 (106)
35 1ip9_A BEM1 protein; ubiquitin 76.3 2.8 9.7E-05 26.9 3.5 30 30-60 26-55 (85)
36 3dbh_I NEDD8; cell cycle, acti 75.8 4.1 0.00014 24.2 4.0 59 28-90 25-83 (88)
37 2l7r_A Ubiquitin-like protein 75.4 9.2 0.00032 23.5 5.8 59 28-90 30-88 (93)
38 3phx_B Ubiquitin-like protein 75.2 6.4 0.00022 23.0 4.8 59 28-90 17-75 (79)
39 2bwf_A Ubiquitin-like protein 75.0 5.9 0.0002 22.8 4.5 58 28-90 16-74 (77)
40 3kyd_D Small ubiquitin-related 74.7 11 0.00037 25.1 6.2 61 9-75 39-99 (115)
41 1yqb_A Ubiquilin 3; structural 74.4 11 0.00038 23.6 6.0 62 28-93 34-95 (100)
42 1vd2_A Protein kinase C, IOTA 74.0 14 0.00049 23.4 7.0 62 27-88 17-86 (89)
43 3k9o_B Ubiquitin, UBB+1; E2-25 73.9 5.7 0.00019 24.1 4.4 62 28-93 14-75 (96)
44 4eew_A Large proline-rich prot 73.8 6.5 0.00022 23.5 4.6 45 29-74 31-75 (88)
45 1yx5_B Ubiquitin; proteasome, 73.1 5.9 0.0002 24.4 4.4 61 29-93 14-74 (98)
46 1wx7_A Ubiquilin 3; ubiquitin- 73.0 13 0.00045 23.2 6.2 62 28-93 29-90 (106)
47 3plu_A Ubiquitin-like modifier 72.5 16 0.00055 23.4 6.7 60 26-90 32-92 (93)
48 1wf9_A NPL4 family protein; be 71.7 4.6 0.00016 25.7 3.7 73 11-94 8-97 (107)
49 3v6c_B Ubiquitin; structural g 71.7 6.9 0.00024 23.7 4.4 57 29-89 31-87 (91)
50 4hcn_B Polyubiquitin, ubiquiti 71.2 6 0.0002 24.5 4.1 58 28-90 35-93 (98)
51 1wz0_A Ubiquitin-like protein 70.1 4.2 0.00014 26.3 3.3 48 27-75 36-83 (104)
52 4fbj_B NEDD8; effector-HOST ta 70.0 7.5 0.00026 23.6 4.3 60 29-92 14-73 (88)
53 1sif_A Ubiquitin; hydrophobic 69.7 7 0.00024 23.7 4.1 59 28-91 22-81 (88)
54 1wx8_A Riken cDNA 4931431F19; 69.4 10 0.00035 23.1 4.9 58 29-91 30-88 (96)
55 2faz_A Ubiquitin-like containi 67.9 6.7 0.00023 22.8 3.7 57 29-90 17-75 (78)
56 1j0g_A Hypothetical protein 18 67.8 21 0.00073 22.9 6.3 59 22-81 20-79 (92)
57 2kk8_A Uncharacterized protein 67.7 17 0.00059 21.9 5.6 58 29-90 24-82 (84)
58 2io1_B Small ubiquitin-related 65.7 22 0.00074 22.2 6.6 60 10-75 7-66 (94)
59 2ojr_A Ubiquitin; lanthide-bin 65.0 11 0.00039 23.8 4.6 58 29-91 49-107 (111)
60 4a3p_A Ubiquitin carboxyl-term 64.9 20 0.0007 25.5 6.4 62 28-92 142-209 (217)
61 1ttn_A DC-UBP, dendritic cell- 64.2 20 0.00068 22.4 5.6 60 29-93 37-97 (106)
62 2klc_A Ubiquilin-1; ubiquitin- 63.9 10 0.00035 23.7 4.1 59 28-91 37-96 (101)
63 2kan_A Uncharacterized protein 63.9 14 0.00047 22.8 4.7 61 28-92 27-88 (94)
64 3vdz_A Ubiquitin-40S ribosomal 63.6 11 0.00038 24.0 4.3 60 28-91 48-107 (111)
65 3m62_B UV excision repair prot 63.5 16 0.00054 23.0 5.0 62 29-94 15-76 (106)
66 1yfb_A Transition state regula 63.4 7.2 0.00025 22.9 3.1 21 43-63 28-48 (59)
67 2kd0_A LRR repeats and ubiquit 63.1 13 0.00043 22.5 4.3 56 29-90 25-82 (85)
68 1x1m_A Ubiquitin-like protein 63.0 25 0.00086 22.0 5.9 56 35-93 44-101 (107)
69 1wjn_A Tubulin-folding protein 62.8 8.3 0.00028 23.8 3.5 32 30-61 27-59 (97)
70 1mvf_D MAZE protein, PEMI-like 61.9 6.4 0.00022 23.9 2.8 50 43-98 19-75 (82)
71 1j8c_A Ubiquitin-like protein 59.8 15 0.0005 24.1 4.5 60 28-92 44-104 (125)
72 2l66_A SSO7C4, transcriptional 59.6 9.9 0.00034 21.4 3.1 21 43-63 18-38 (53)
73 3m63_B Ubiquitin domain-contai 59.2 6.9 0.00024 24.6 2.7 45 30-75 42-86 (101)
74 2kc2_A Talin-1, F1; FERM, adhe 58.1 18 0.00062 24.4 4.8 40 22-62 18-57 (128)
75 1v5t_A 8430435I17RIK protein; 57.8 24 0.00082 21.3 5.0 60 31-93 23-84 (90)
76 2lxa_A Ubiquitin-like protein 57.3 24 0.00083 21.7 5.0 42 33-75 21-63 (87)
77 3rt3_B Ubiquitin-like protein 55.7 28 0.00094 22.9 5.4 60 29-91 16-76 (159)
78 1wgd_A Homocysteine-responsive 55.6 26 0.00089 21.1 4.9 58 32-91 26-85 (93)
79 2wyq_A HHR23A, UV excision rep 55.4 28 0.00097 20.2 6.5 60 29-93 19-82 (85)
80 4b6w_A Tubulin-specific chaper 55.3 12 0.00042 23.0 3.3 30 31-60 20-50 (86)
81 2pjh_A Protein NPL4, nuclear p 54.9 5.4 0.00018 24.4 1.5 43 11-59 5-48 (80)
82 2i1s_A Hypothetical protein; m 54.6 40 0.0014 23.4 6.3 32 22-54 19-50 (188)
83 1v5o_A 1700011N24RIK protein; 54.5 24 0.00081 21.9 4.7 58 30-91 26-84 (102)
84 3b08_A Polyubiquitin-C, ubiqui 54.3 20 0.00069 23.0 4.4 60 29-92 14-73 (152)
85 3b08_A Polyubiquitin-C, ubiqui 53.3 23 0.00079 22.7 4.6 60 28-91 89-148 (152)
86 2e5i_A Heterogeneous nuclear r 53.3 11 0.00037 24.8 2.9 30 52-81 21-51 (124)
87 1we7_A SF3A1 protein; structur 52.1 42 0.0014 21.2 5.8 59 30-92 50-108 (115)
88 1pqs_A Cell division control p 51.9 9.9 0.00034 23.5 2.4 23 30-52 6-28 (77)
89 3tix_A Ubiquitin-like protein 50.5 13 0.00045 27.4 3.2 49 26-75 67-115 (207)
90 1q1o_A Cell division control p 49.8 11 0.00039 24.5 2.5 26 27-52 24-49 (98)
91 2diu_A KIAA0430 protein; struc 49.5 13 0.00044 24.0 2.8 43 51-94 5-57 (96)
92 3b1l_X E3 ubiquitin-protein li 54.6 3.6 0.00012 23.8 0.0 45 30-75 15-59 (76)
93 2kdi_A Ubiquitin, vacuolar pro 48.7 29 0.00098 22.1 4.4 59 30-93 24-83 (114)
94 2kj6_A Tubulin folding cofacto 48.5 44 0.0015 20.9 5.2 34 28-61 29-63 (97)
95 3pge_A SUMO-modified prolifera 47.8 23 0.00078 25.6 4.1 37 26-62 39-75 (200)
96 1we6_A Splicing factor, putati 47.6 31 0.0011 21.6 4.4 61 28-92 43-104 (111)
97 2al3_A TUG long isoform; TUG U 47.5 22 0.00077 22.7 3.6 41 23-64 17-57 (90)
98 2dnf_A Doublecortin domain-con 47.2 53 0.0018 21.2 5.5 72 8-93 13-89 (108)
99 3rt3_B Ubiquitin-like protein 47.0 39 0.0013 22.1 5.0 60 28-91 94-153 (159)
100 3tuo_A DNA-binding protein SAT 46.3 61 0.0021 21.4 7.4 74 5-78 7-93 (105)
101 1uel_A HHR23B, UV excision rep 45.7 44 0.0015 20.2 4.8 61 29-94 14-78 (95)
102 2dzm_A FAS-associated factor 1 45.5 33 0.0011 21.8 4.3 61 30-94 23-84 (100)
103 3zzy_A Polypyrimidine tract-bi 44.3 17 0.00056 24.3 2.8 33 49-81 21-54 (130)
104 3u30_A Ubiquitin, linear DI-ub 43.8 37 0.0013 22.7 4.6 60 29-92 34-93 (172)
105 2kdb_A Homocysteine-responsive 43.7 33 0.0011 21.6 4.0 47 29-77 39-88 (99)
106 1wxv_A BAG-family molecular ch 43.2 51 0.0018 19.6 5.4 61 29-93 20-86 (92)
107 1x5p_A Negative elongation fac 43.1 22 0.00074 21.2 3.0 34 59-93 18-59 (97)
108 2eki_A DRG 1, developmentally- 42.1 36 0.0012 21.8 4.0 44 14-61 14-58 (93)
109 2fnj_B Transcription elongatio 41.7 73 0.0025 21.0 8.1 62 32-97 18-86 (118)
110 1v86_A DNA segment, CHR 7, way 41.2 32 0.0011 21.1 3.6 44 29-75 30-74 (95)
111 2l32_A Small archaeal modifier 41.0 24 0.00082 21.2 2.9 37 29-70 14-50 (74)
112 2l76_A Nfatc2-interacting prot 40.3 56 0.0019 21.0 4.7 49 26-75 31-79 (95)
113 1v2y_A 3300001G02RIK protein; 40.1 25 0.00087 22.6 3.1 64 31-97 23-101 (105)
114 2bz2_A Negative elongation fac 40.1 20 0.00069 22.8 2.6 36 58-94 41-84 (121)
115 1wju_A NEDD8 ultimate buster-1 39.9 72 0.0024 20.3 7.8 48 26-74 30-77 (100)
116 2ylm_A Ubiquitin carboxyl-term 39.7 17 0.00057 29.6 2.6 51 27-77 353-410 (530)
117 4dbg_A Ranbp-type and C3HC4-ty 39.4 50 0.0017 21.3 4.4 47 27-74 38-84 (105)
118 3l0w_B Monoubiquitinated proli 38.5 55 0.0019 22.3 4.8 60 29-92 14-73 (169)
119 1sjr_A Polypyrimidine tract-bi 38.5 41 0.0014 23.3 4.2 30 52-81 42-72 (164)
120 2ylm_A Ubiquitin carboxyl-term 37.9 34 0.0012 27.7 4.2 61 30-91 151-217 (530)
121 1ryj_A Unknown; beta/alpha pro 37.0 38 0.0013 19.7 3.3 37 29-70 17-53 (70)
122 3gs2_A E3 ubiquitin-protein li 36.8 91 0.0031 20.7 8.0 67 26-92 21-109 (111)
123 3d2w_A TAR DNA-binding protein 36.7 30 0.001 20.6 2.9 36 59-94 14-59 (89)
124 3beg_B Splicing factor, argini 36.0 32 0.0011 21.4 3.0 36 59-94 19-62 (115)
125 3cmm_A Ubiquitin-activating en 35.5 44 0.0015 29.5 4.7 50 29-80 921-981 (1015)
126 1x4c_A Splicing factor, argini 35.4 42 0.0014 20.4 3.5 24 70-93 30-60 (108)
127 3q3f_A Ribonuclease/ubiquitin 34.2 48 0.0016 23.4 4.0 58 29-91 119-177 (189)
128 3u5e_m 60S ribosomal protein L 34.2 8.5 0.00029 25.1 0.0 45 30-75 15-59 (128)
129 2kzr_A Ubiquitin thioesterase 33.8 35 0.0012 20.3 2.9 57 32-92 17-78 (86)
130 3jyu_A Ubiquitin carboxyl-term 32.7 39 0.0013 24.3 3.4 60 30-92 156-221 (231)
131 4efo_A Serine/threonine-protei 32.2 82 0.0028 20.0 4.5 38 26-63 24-61 (94)
132 1vjk_A Molybdopterin convertin 31.7 58 0.002 19.9 3.7 43 28-70 29-81 (98)
133 4ajy_B Transcription elongatio 31.4 79 0.0027 20.9 4.5 65 30-98 15-87 (118)
134 2w1t_A Spovt, stage V sporulat 30.5 43 0.0015 23.8 3.2 20 43-62 20-39 (178)
135 3rpf_C Molybdopterin convertin 30.0 70 0.0024 18.5 3.7 39 34-72 19-59 (74)
136 2cqh_A IGF-II mRNA-binding pro 29.6 29 0.00099 20.3 1.9 17 32-48 16-32 (93)
137 3po0_A Small archaeal modifier 29.2 50 0.0017 19.6 3.0 43 28-70 20-72 (89)
138 3u5c_f 40S ribosomal protein S 28.5 12 0.00041 25.6 0.0 58 30-91 15-72 (152)
139 1wf0_A TDP-43, TAR DNA-binding 28.5 23 0.0008 20.5 1.3 25 70-94 20-53 (88)
140 4a20_A Ubiquitin-like protein 28.1 52 0.0018 20.6 3.0 55 32-91 38-95 (98)
141 2div_A TRNA selenocysteine ass 28.0 52 0.0018 19.3 2.9 10 84-93 53-62 (99)
142 1pzx_A Hypothetical protein AP 27.7 63 0.0022 23.9 3.9 57 26-93 35-92 (289)
143 3fdj_A DEGV family protein; GU 26.9 81 0.0028 23.2 4.3 55 26-93 32-86 (278)
144 1v6e_A Cytoskeleton-associated 26.0 1.1E+02 0.0039 18.4 5.6 33 28-60 21-54 (95)
145 1wia_A Hypothetical ubiquitin- 25.2 49 0.0017 19.8 2.5 56 29-92 21-78 (95)
146 2e5j_A Methenyltetrahydrofolat 24.4 70 0.0024 18.8 3.0 23 26-48 19-43 (97)
147 1fm0_D Molybdopterin convertin 24.4 38 0.0013 19.7 1.8 36 33-69 23-63 (81)
148 2bs2_B Quinol-fumarate reducta 24.0 1.9E+02 0.0064 20.2 6.0 42 8-49 5-47 (241)
149 3ivf_A Talin-1; FERM domain, c 23.6 1.2E+02 0.0041 22.7 4.8 40 22-61 92-131 (371)
150 2i2y_A Fusion protein consists 23.5 99 0.0034 19.7 3.8 37 58-94 75-121 (150)
151 3bj5_A Protein disulfide-isome 23.0 1.2E+02 0.0041 19.8 4.3 25 26-50 102-127 (147)
152 2cq4_A RNA binding motif prote 22.9 98 0.0033 18.6 3.6 12 83-94 67-78 (114)
153 1ef1_A Moesin; membrane, FERM 22.8 1.5E+02 0.005 21.2 5.0 33 28-60 13-45 (294)
154 3ll7_A Putative methyltransfer 21.7 64 0.0022 25.4 3.0 23 35-61 371-393 (410)
155 1wf1_A RNA-binding protein RAL 21.7 1.2E+02 0.0041 18.1 3.8 9 84-92 63-71 (110)
156 2daf_A FLJ35834 protein; hypot 21.4 1.8E+02 0.0063 19.2 5.9 46 29-75 30-75 (118)
157 2wbr_A GW182, gawky, LD47780P; 21.3 1.4E+02 0.0049 18.6 4.1 37 57-93 8-53 (89)
158 1wgk_A Riken cDNA 2900073H19 p 21.0 1.5E+02 0.0052 19.0 4.3 35 30-64 34-81 (114)
159 2hvz_A Splicing factor, argini 21.0 78 0.0027 18.6 2.8 17 32-48 8-24 (101)
160 1iqt_A AUF1, heterogeneous nuc 20.7 1E+02 0.0036 16.8 3.1 12 83-94 41-52 (75)
161 2glw_A PHS018, 92AA long hypot 20.3 67 0.0023 20.1 2.4 22 42-63 65-86 (92)
162 2xs2_A Deleted in azoospermia- 20.2 96 0.0033 18.2 3.1 11 84-94 51-61 (102)
163 2err_A Ataxin-2-binding protei 20.2 1.1E+02 0.0037 18.5 3.4 12 83-94 69-80 (109)
164 1wgg_A Ubiquitin carboxyl-term 20.1 83 0.0029 19.2 2.8 58 30-93 22-80 (96)
No 1
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=8.8e-41 Score=233.33 Aligned_cols=90 Identities=47% Similarity=0.859 Sum_probs=85.1
Q ss_pred EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167 7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL 86 (102)
Q Consensus 7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL 86 (102)
-|||||||+. ++++|+|+|+|||||+++||+||+.+||+||+|++++||||||||++|++|++||+||++|||+||||
T Consensus 36 rIPVIvEr~~--~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfL 113 (125)
T 3m95_A 36 RVPVIVEKAP--KARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFL 113 (125)
T ss_dssp EEEEEEEECT--TCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred eEEEEEEecC--CCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeE
Confidence 3899999965 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcccCC
Q 034167 87 YVTYSGENTFGS 98 (102)
Q Consensus 87 yl~Ys~~~afG~ 98 (102)
||+||+|+|||+
T Consensus 114 Y~~Ys~e~tfG~ 125 (125)
T 3m95_A 114 YIAFSDENVYGN 125 (125)
T ss_dssp EEEEESSSCC--
T ss_pred EEEecCccccCC
Confidence 999999999994
No 2
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=1.4e-40 Score=230.26 Aligned_cols=89 Identities=67% Similarity=1.066 Sum_probs=86.1
Q ss_pred EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167 7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL 86 (102)
Q Consensus 7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL 86 (102)
-|||||||+. ++++|+|+|+|||||+++||+||+.+||+||+|+++++|||||||++|++|++||+||++|||+||||
T Consensus 30 riPVIvE~~~--~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfL 107 (118)
T 3rui_B 30 RIPVICEKAE--KSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFL 107 (118)
T ss_dssp EEEEEEEECT--TCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred ceEEEEEeCC--CCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeE
Confidence 3899999974 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcccC
Q 034167 87 YVTYSGENTFG 97 (102)
Q Consensus 87 yl~Ys~~~afG 97 (102)
||+||+|+|||
T Consensus 108 yv~Ys~~~~fG 118 (118)
T 3rui_B 108 YVTYSGENTFG 118 (118)
T ss_dssp EEEEEECCCBC
T ss_pred EEEEeccccCC
Confidence 99999999999
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=1.6e-40 Score=230.22 Aligned_cols=89 Identities=47% Similarity=0.820 Sum_probs=84.1
Q ss_pred EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167 7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL 86 (102)
Q Consensus 7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL 86 (102)
-||||+||+. ++++|+|+|+|||||+++||+||+.+||+||+|+++++|||||||++|++|++||+||++|||+||||
T Consensus 31 rIPVIvEr~~--~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfL 108 (119)
T 3h9d_A 31 RLPIICEKVY--NSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFL 108 (119)
T ss_dssp EEEEEEEECT--TSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCE
T ss_pred eEEEEEEecC--CCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeE
Confidence 3899999965 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcccC
Q 034167 87 YVTYSGENTFG 97 (102)
Q Consensus 87 yl~Ys~~~afG 97 (102)
||+||+|+|||
T Consensus 109 yv~Ys~e~~fG 119 (119)
T 3h9d_A 109 YMKYSGEATFG 119 (119)
T ss_dssp EEEEECC-CC-
T ss_pred EEEEecccccC
Confidence 99999999999
No 4
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=2.3e-39 Score=227.32 Aligned_cols=94 Identities=32% Similarity=0.687 Sum_probs=87.2
Q ss_pred EeeEEEEEeecCCCC-CCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEE-EEcCcCCCCCchHHHHHhhccCCCC
Q 034167 7 TTRYLILSYTNKVSS-LPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDNVLPPTGAIMSAIYEEKKDEDG 84 (102)
Q Consensus 7 ~~~vIi~~~~~~~~~-~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFl-yVnn~lp~~~~~m~~lY~~~kd~DG 84 (102)
-||||+|++.. ++ +|.|+|+||+||+++||+||+.+||+||+|+++++||| ||||++|++|++||+||++|||+||
T Consensus 35 kIPVIvEk~~~--s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDG 112 (130)
T 2zjd_A 35 KIPVIIERYKG--EKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDG 112 (130)
T ss_dssp EEEEEEEECTT--CCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTS
T ss_pred ceEEEEEEcCC--CCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCC
Confidence 48999999765 55 99999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eEEEEecCCcccCCCCCC
Q 034167 85 FLYVTYSGENTFGSHIPV 102 (102)
Q Consensus 85 fLyl~Ys~~~afG~~~~~ 102 (102)
||||+||+|+|||+-+++
T Consensus 113 fLyv~Ys~e~tfG~~~~~ 130 (130)
T 2zjd_A 113 FLYMVYASQETFGMKLSV 130 (130)
T ss_dssp CEEEEEEEHHHHHHC---
T ss_pred EEEEEEeCCcccCCcccC
Confidence 999999999999976653
No 5
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=1.8e-38 Score=218.93 Aligned_cols=90 Identities=50% Similarity=0.902 Sum_probs=85.7
Q ss_pred EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167 7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL 86 (102)
Q Consensus 7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL 86 (102)
-||||||++. ++++|.|+|+||+||.++||+||+.+||+||+|+++++|||||||.+|++|++||+||++|||+||||
T Consensus 28 ~IPVIve~~~--~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfL 105 (117)
T 1eo6_A 28 RVPVIVEKVS--GSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFL 105 (117)
T ss_dssp EEEEEEEECT--TCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred eEEEEEEecC--CCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEE
Confidence 3899999965 46799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcccCC
Q 034167 87 YVTYSGENTFGS 98 (102)
Q Consensus 87 yl~Ys~~~afG~ 98 (102)
||+||+|+|||+
T Consensus 106 yi~Ys~~~~fG~ 117 (117)
T 1eo6_A 106 YVAYSGENTFGF 117 (117)
T ss_dssp EEEEECCCCCC-
T ss_pred EEEEeCCccCCC
Confidence 999999999995
No 6
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=5.3e-38 Score=208.77 Aligned_cols=87 Identities=23% Similarity=0.409 Sum_probs=84.1
Q ss_pred eEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCc-CCCCCchHHHHHhhccCCCCeEE
Q 034167 9 RYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDEDGFLY 87 (102)
Q Consensus 9 ~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~-lp~~~~~m~~lY~~~kd~DGfLy 87 (102)
.-|++||++ .|++|.|+|+||+||+++||+||+.+|||||+|+++++|||||||+ +|++|++||+||++|| +|||||
T Consensus 4 ~Kv~v~fk~-~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLy 81 (91)
T 4gdk_A 4 KKIDILLKA-VGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLV 81 (91)
T ss_dssp CEEEEEEEE-CSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEE
T ss_pred ceEEEEEEe-cCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEE
Confidence 568999999 8999999999999999999999999999999999999999999995 7999999999999999 999999
Q ss_pred EEecCCcccC
Q 034167 88 VTYSGENTFG 97 (102)
Q Consensus 88 l~Ys~~~afG 97 (102)
|+||+++|||
T Consensus 82 v~Ys~~~afG 91 (91)
T 4gdk_A 82 LHYCKSQAWG 91 (91)
T ss_dssp EEEESSCCCC
T ss_pred EEEeCccccC
Confidence 9999999999
No 7
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.4e-35 Score=197.20 Aligned_cols=86 Identities=13% Similarity=0.371 Sum_probs=71.4
Q ss_pred EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCc-CCCCCchHHHHHhhccCCCCe
Q 034167 7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDEDGF 85 (102)
Q Consensus 7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~-lp~~~~~m~~lY~~~kd~DGf 85 (102)
..+-|.+||++ .|++|+|+|+||+||+++|+++|+.+|||||++ ++|||||||+ +|++|++||+||++|| +|||
T Consensus 5 ~~~Kv~vrfk~-~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~ 79 (91)
T 3w1s_C 5 NIQKIQIKFQP-IGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE 79 (91)
T ss_dssp -CCEEEEEEEE-CCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred CCCeEEEEEEe-cCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence 34678999999 899999999999999999999999999999999 6999999995 8999999999999999 7999
Q ss_pred EEEEecCCcccC
Q 034167 86 LYVTYSGENTFG 97 (102)
Q Consensus 86 Lyl~Ys~~~afG 97 (102)
|||+||+++|||
T Consensus 80 Lyv~Ys~~~afG 91 (91)
T 3w1s_C 80 LIVSYCASVAFG 91 (91)
T ss_dssp EEEEEEC---CC
T ss_pred EEEEEeCccccC
Confidence 999999999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=4.9e-35 Score=196.12 Aligned_cols=84 Identities=15% Similarity=0.372 Sum_probs=79.7
Q ss_pred eEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcC-cCCCCCchHHHHHhhccCCCCeEE
Q 034167 9 RYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKDEDGFLY 87 (102)
Q Consensus 9 ~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn-~lp~~~~~m~~lY~~~kd~DGfLy 87 (102)
.-|++++++ .+++|.|+|+||+||+++||+||+.+|||||+++ +||||||| ++|++|++|++||++||| |||||
T Consensus 12 ~KV~V~~~~-~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGfLy 86 (96)
T 1wz3_A 12 QKIVVHLRA-TGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGKLV 86 (96)
T ss_dssp CEEEEEEEE-CTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTBEE
T ss_pred CeEEEEEEE-CCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCEEE
Confidence 478888888 6889999999999999999999999999999998 99999999 799999999999999998 99999
Q ss_pred EEecCCcccC
Q 034167 88 VTYSGENTFG 97 (102)
Q Consensus 88 l~Ys~~~afG 97 (102)
|+||+++|||
T Consensus 87 i~Ys~~~afG 96 (96)
T 1wz3_A 87 VNYACSMAWG 96 (96)
T ss_dssp EEEESCSCC-
T ss_pred EEEeCCcccC
Confidence 9999999999
No 9
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=8.9e-35 Score=198.36 Aligned_cols=84 Identities=46% Similarity=0.865 Sum_probs=80.2
Q ss_pred EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167 7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL 86 (102)
Q Consensus 7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL 86 (102)
-||||||+.. ++++|.|+|+||+||.++||+||+.+||+||+++++++|||||||.+|++|++|++||++|||+||||
T Consensus 27 ~IPVive~~~--~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfL 104 (110)
T 2r2q_A 27 RVPVIVEKAP--KARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFL 104 (110)
T ss_dssp EEEEEEEECT--TCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred ceEEEEEecC--CCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEE
Confidence 4899999964 46799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q 034167 87 YVTYSG 92 (102)
Q Consensus 87 yl~Ys~ 92 (102)
||+||+
T Consensus 105 yi~Ys~ 110 (110)
T 2r2q_A 105 YVAYSD 110 (110)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 10
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=94.09 E-value=0.13 Score=39.34 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=31.4
Q ss_pred eEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 56 AIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 56 slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
...+.+++-.++.++.+.+||++++-.|||||+.-..
T Consensus 235 ~~~viihGI~~pl~~pl~~l~~~l~y~DgFLhI~v~~ 271 (275)
T 4gdk_B 235 KNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIP 271 (275)
T ss_dssp CEEEEBTTBCCCTTSBHHHHHHHSCCTTSCEEEEEEE
T ss_pred cceEEEeCCcCCCCCCHHHHHHhccCCCceEEEEEEe
Confidence 3456677777999999999999999999999997653
No 11
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=93.42 E-value=0.091 Score=33.76 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=40.6
Q ss_pred ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHH
Q 034167 26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 74 (102)
Q Consensus 26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~ 74 (102)
+.-+|.|+.+.++.+++..-|++-+++++.++.|..++.-..+++++.+
T Consensus 20 ~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~D 68 (82)
T 3goe_A 20 EDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQS 68 (82)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGG
T ss_pred CCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhh
Confidence 4568999999999999999999999999999998888865444555443
No 12
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=93.10 E-value=0.077 Score=40.50 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=35.6
Q ss_pred CcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEE
Q 034167 35 DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVT 89 (102)
Q Consensus 35 ~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~ 89 (102)
..|+++++. ..+--- .....+++++-.++.++.|.+||+++.-.|||||+.
T Consensus 222 ~~TLg~~L~---~~lp~l-~~~~~~iihGi~vp~~~pl~~l~~~~~y~DgFLhiv 272 (274)
T 3vqi_A 222 ELSVAELLD---SIKLSS-DGVKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLV 272 (274)
T ss_dssp -CBHHHHHH---TTTCCC---CCEEEETTEEEETTSBHHHHHHHHCCTTSCEEEE
T ss_pred cccHHHHHH---Hhcccc-ccceEEEEeCccCCCCCcHHHHHHHccCCCceEEEE
Confidence 556666544 433211 123346677777899999999999999999999986
No 13
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=91.74 E-value=0.16 Score=39.18 Aligned_cols=39 Identities=21% Similarity=0.473 Sum_probs=32.7
Q ss_pred cceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 54 EKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 54 ~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
+.+..+.+++-.|+.++.+.+||++++-.|||||+.-..
T Consensus 248 ~~~~~viihGI~vpl~~pl~wl~~~l~~pDgFLhIvv~~ 286 (297)
T 2dyo_A 248 GNDVMVICQGIEIPWHMLLYDLYSKLRSFDGFLYITLVP 286 (297)
T ss_dssp --CEEEEETTEEECTTCBHHHHHHHHCCTTSCEEEEEEE
T ss_pred CCCCeEEEeCccCCCCCcHHHHHHHhcCCCcEEEEEEEE
Confidence 444578888888889999999999999999999998763
No 14
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=88.94 E-value=1.6 Score=26.63 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=39.3
Q ss_pred eeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 27 NYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 27 k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
...|.|.++.+++.++...+++.++++++--|+| ++.....++|.+++
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL 67 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 4578899999999999999999999988655666 55555667888887
No 15
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=88.11 E-value=1.8 Score=25.55 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=42.8
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
..+-|..+.|++++...+.++.++++++--++| ++.....+.+++++- -+ ++..+++...
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~~~--i~-~~~~i~l~~~ 75 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVIEVYQE 75 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTEEEEEEEC
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHHcC--CC-CCCEEEEEEe
Confidence 457799999999999999999999987554544 555556677887752 11 3346776653
No 16
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=87.39 E-value=2.1 Score=25.43 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=37.1
Q ss_pred ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
+...|.|.++.+++.++...+++.++++++--|+|=+..+ ..++|.+++
T Consensus 12 ~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l 60 (72)
T 1wm3_A 12 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 60 (72)
T ss_dssp CEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTTT
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 3567889999999999999999999998776677644443 444555544
No 17
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=86.62 E-value=2.5 Score=26.67 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=43.5
Q ss_pred eEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 9 RYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 9 ~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
+-|.++.+...+ +...|.|.++.+++.++...+++.++++++--|+| ++.....++|.+++
T Consensus 4 ~~i~ikVk~~~g-----~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl 64 (91)
T 2io0_B 4 DHINLKVAGQDG-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 64 (91)
T ss_dssp CEEEEEEECTTS-----CEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TTEECCTTCCTTTT
T ss_pred CeEEEEEECCCC-----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 345666665333 45678899999999999999999999987666666 44434455666655
No 18
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.89 E-value=3.2 Score=26.28 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=42.7
Q ss_pred EecCCcchHhHHHHHHHHhcCCCcceEEEEEc---C-cCCCCCchHHHHHhhccCCCCeEEE
Q 034167 31 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---N-VLPPTGAIMSAIYEEKKDEDGFLYV 88 (102)
Q Consensus 31 lVp~~~tv~~f~~~lRk~L~l~~~~slFlyVn---n-~lp~~~~~m~~lY~~~kd~DGfLyl 88 (102)
-||.+.+++++..-|++||++++++...-|=. + ..+..|+.|.+.++.=+ +|.|-+
T Consensus 19 rvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL 78 (83)
T 1oey_A 19 KTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTL 78 (83)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEE
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEE
Confidence 48999999999999999999987665555554 2 24678889999988765 445443
No 19
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.36 E-value=5.2 Score=23.80 Aligned_cols=60 Identities=7% Similarity=-0.001 Sum_probs=42.3
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
.+-|+.+.|++++...|.++.++++++-- |+.++.....+.++++.= -+ ++..|++....
T Consensus 21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qr-L~~~Gk~L~d~~tL~~~~--i~-~g~~i~l~~~~ 80 (87)
T 1wh3_A 21 AYAINPNSFILGLKQQIEDQQGLPKKQQQ-LEFQGQVLQDWLGLGIYG--IQ-DSDTLILSKKK 80 (87)
T ss_dssp EEEECSSSBHHHHHHHHHHHTCCCTTTEE-EEETTEECCSSSBHHHHT--CC-TTEEEEEEECS
T ss_pred EEEeCCCChHHHHHHHHHHHhCCChHHEE-EEECCEEccCCCCHHHCC--CC-CCCEEEEEEec
Confidence 45699999999999999999999876443 334665556677887651 12 34477777654
No 20
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=83.14 E-value=7.1 Score=25.08 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=39.1
Q ss_pred eeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 27 NYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 27 k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
...|.|.++.+++.++..-+++.+++.+.--|+| ++....+++|..+|
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL 85 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 4578999999999999999999999988655665 66555667788887
No 21
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=82.72 E-value=3.7 Score=26.94 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=39.5
Q ss_pred eeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 27 NYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 27 k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
...|.|.++.+++.++...+++.++++++--|+| ++.....++|..++
T Consensus 38 ~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 38 EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL 85 (110)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 4578899999999999999999999988666666 55555667888888
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=82.64 E-value=2.3 Score=25.07 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=42.5
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
..+-|+.+.||+++...|.++.++++++-- |+.++.....+.++++. .-+ ++..|++....
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~qr-L~~~g~~L~d~~tL~~~--~i~-~~~~l~l~~r~ 76 (85)
T 3mtn_B 16 ITLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY--NIQ-KWSTLFLLLRL 76 (85)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTGGG--TCC-TTCEEEEECCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHEE-EEECCEECCCCCCHHHc--CCC-CCCEEEEEEEC
Confidence 345699999999999999999999876433 33466655666777663 112 35577777643
No 23
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=82.13 E-value=4.5 Score=25.18 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=43.3
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
..+-|..+.|++++...+..+.++++++--++| ++.....+.+++++- -+ ++..|++...
T Consensus 34 ~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i~-~g~~I~l~~~ 93 (97)
T 1wyw_B 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVIEVYQE 93 (97)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTCEEEEEES
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--CC-CCCEEEEEEe
Confidence 456799999999999999999999987554544 555556677888752 22 3447777654
No 24
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=81.48 E-value=2.2 Score=25.23 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=43.1
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 93 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 93 (102)
..+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++. .-+ ++..|++.....
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~q-rL~~~g~~L~d~~tL~~~--~i~-~~~~i~l~~rl~ 77 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NIH-NHSALYLLLKLR 77 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETBEECCTTCBTTTT--TCC-TTCEEEEEECCC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHE-EEEECCeECCCCCCHHHC--CCC-CCCEEEEEEecc
Confidence 34568999999999999999999987643 344466655666677663 122 355788776543
No 25
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=81.25 E-value=2.9 Score=23.94 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=40.1
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEec
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 91 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys 91 (102)
..+-|+.+.|++++...|.++.++++++- -|+.++.....+.++++. .- ++..+++...
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR 72 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHe-EEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 34669999999999999999999987643 344466544456666543 22 3446777654
No 26
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=80.54 E-value=4.5 Score=24.23 Aligned_cols=60 Identities=8% Similarity=-0.005 Sum_probs=41.9
Q ss_pred EE-EecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 29 RY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 29 Kf-lVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
.+ -|+.+.|++++...|.++.++++++--. +.++.....+.++++.= -+ ++..|++....
T Consensus 22 ~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL-~~~gk~L~d~~tL~~~~--i~-~g~~i~l~~~~ 82 (89)
T 1wy8_A 22 TIEDVSRKATIEELRERVWALFDVRPECQRL-FYRGKQLENGYTLFDYD--VG-LNDIIQLLVRP 82 (89)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSCCCTTTEEE-EETTEECCSSSBHHHHT--CC-TTCEEEEEECC
T ss_pred EEEecCCCCCHHHHHHHHHHHHCcChhhEEE-EECCeECCCCCCHHHCC--CC-CCCEEEEEEeC
Confidence 45 3899999999999999999998764433 34665556677887651 12 34578877654
No 27
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=80.52 E-value=3.4 Score=23.58 Aligned_cols=59 Identities=5% Similarity=-0.008 Sum_probs=40.6
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEec
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 91 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys 91 (102)
..+-|+.+.|++++...|.++.++++++- -|+.++.....+.++++. +- ++..+++...
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY----KILGGSVLHLVLA 72 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 34669999999999999999999987643 344566544556666553 22 3446777654
No 28
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.18 E-value=6.1 Score=25.58 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=43.0
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
..+-|.++.||+++...|..+-++++++--. ..+++....+.++++ |.-. ++..|+|.|.
T Consensus 41 i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrL-i~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~ 100 (100)
T 1uh6_A 41 VRVKCNTDDTIGDLKKLIAAQTGTRWNKIVL-KKWYTIFKDHVSLGD-YEIH--DGMNLELYYQ 100 (100)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGCEE-EETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEE-EECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence 3456999999999999999999998765433 344555566778887 4322 3447888884
No 29
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=78.98 E-value=2.4 Score=28.63 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=39.8
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCC-cceEEEEEc--C-c----CCCCCchHHHHHhhccC
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSA-EKAIFIFVD--N-V----LPPTGAIMSAIYEEKKD 81 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~-~~slFlyVn--n-~----lp~~~~~m~~lY~~~kd 81 (102)
.-|.|+++.++++|...+-+.+++++ ...+...+| | + ++.++.+|++.+....+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~ 119 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD 119 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhc
Confidence 35899999999999999999999986 466677765 3 2 33455667766666543
No 30
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.74 E-value=4.9 Score=23.36 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=32.9
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHH
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 74 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~ 74 (102)
.+-|+.+.|++++...|.++.++++++--. +.++.....+.++++
T Consensus 21 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL-~~~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKLNVPVRQQRL-LFKGKALADGKRLSD 65 (81)
T ss_dssp EEEECSSCBHHHHHHHHHHHTCCCTTTCEE-EETTEECCTTSBGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EECCeECCCCCcHHH
Confidence 456999999999999999999998654333 346654455667665
No 31
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=77.72 E-value=8.1 Score=23.33 Aligned_cols=61 Identities=8% Similarity=-0.029 Sum_probs=42.5
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 93 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 93 (102)
.+-|+.+.|++++...|.++.++++++--.+ .++.....+.++++.= -+ ++..|++.....
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~~--I~-~g~~i~l~~~~~ 78 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYG--LK-PLSTVFMNLRLR 78 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSSSCCCTTSBHHHHH--CS-TTCEEEEEEC--
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHcC--CC-CCCEEEEEEEcC
Confidence 4568999999999999999999987654333 3555556677887752 22 344788877543
No 32
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=77.53 E-value=4.5 Score=24.36 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=41.9
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
.+-|..+.||+++...|..+.++++++--.+ .++.....+.++++. +-++..|++....
T Consensus 19 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~~Gk~L~d~~tL~~~----~i~g~~i~l~~~~ 77 (90)
T 4dwf_A 19 TFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-YQGRVLQDDKKLQEY----NVGGKVIHLVERA 77 (90)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGGG----TCTTEEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCeECCCCCCHHHc----CCCCcEEEEEecC
Confidence 4568999999999999999999987644333 466655667787763 2224577776654
No 33
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=76.84 E-value=7.7 Score=24.25 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=41.3
Q ss_pred EEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 10 YLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 10 vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
-|.++.+...+ +...|.|.++.+++.++...+++.++++++--|+| ++.....++|..++
T Consensus 17 ~i~ikV~~~~g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~dl 76 (93)
T 2d07_B 17 HINLKVAGQDG-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 76 (93)
T ss_dssp EEEEEEECTTS-----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred eEEEEEECCCC-----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE-CCEEcCCCCCHHHc
Confidence 45555554322 34568899999999999999999999987655665 44333445555544
No 34
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=76.60 E-value=3.3 Score=27.06 Aligned_cols=49 Identities=8% Similarity=0.169 Sum_probs=37.3
Q ss_pred ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
+...|.|.++.++..++...+++.++++++--|+| ++.....+.|..+|
T Consensus 41 ~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-dG~rl~~~~Tp~dl 89 (106)
T 2eke_C 41 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPEDL 89 (106)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-CCeEcCCCCCHHHc
Confidence 35668899999999999999999999988666776 44433445566555
No 35
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=76.27 E-value=2.8 Score=26.87 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=24.2
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCcceEEEE
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIF 60 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~~slFly 60 (102)
-.||.+.+++|+..-|+.||+++ +.-+|.|
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~y 55 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTK 55 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEe
Confidence 35899999999999999999995 3344444
No 36
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=75.76 E-value=4.1 Score=24.20 Aligned_cols=59 Identities=3% Similarity=-0.023 Sum_probs=40.7
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEe
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY 90 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Y 90 (102)
..+-|+.+.|++++...|.++.++++++-- |+.++.....+.++++. .-+ ++..|++..
T Consensus 25 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~ 83 (88)
T 3dbh_I 25 IEIDIEPTDKVERIKERVEEKEGIPPQQQR-LIYSGKQMNDEKTAADY--KIL-GGSVLHLVL 83 (88)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCC-EEETTEECCTTSBGGGG--TCC-TTCEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcCHHHEE-EEECCeECCCCCcHHHc--CCC-CCCEEEEEE
Confidence 345699999999999999999999875432 33466655667777764 122 344777654
No 37
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=75.43 E-value=9.2 Score=23.47 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=40.9
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEe
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY 90 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Y 90 (102)
..+-|+.+.|++++...|.++.++++++--. +.++.....+.++++.- -+ ++..|++..
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk~L~D~~tL~~y~--I~-~gstI~lv~ 88 (93)
T 2l7r_A 30 HTFEVTGQETVAQIKAHVASLEGIAPEDQVV-LLAGAPLEDEATLGQCG--VE-ALTTLEVAG 88 (93)
T ss_dssp EEEECCSSCBHHHHHHHHHHHHTCCGGGCEE-EETTEECCTTSBHHHHT--CC-SSCEEEEEC
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcChhHEEE-EECCEECCCCCcHHHCC--CC-CCCEEEEEE
Confidence 3566999999999999999999998764333 34665556677887651 12 344677654
No 38
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=75.20 E-value=6.4 Score=22.98 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=41.0
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEe
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY 90 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Y 90 (102)
..+-|+.+.|++++...|..+.++++++- -|+.++.....+.++++.- -+ ++..|++..
T Consensus 17 ~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~~--i~-~~~~l~l~~ 75 (79)
T 3phx_B 17 STYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEYG--LK-PLSTVFMNL 75 (79)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGGT--CC-TTCEEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHHCC--CC-CCCEEEEEE
Confidence 34569999999999999999999987653 3444666556677777631 12 344777654
No 39
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=74.96 E-value=5.9 Score=22.78 Aligned_cols=58 Identities=12% Similarity=0.085 Sum_probs=39.5
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEe
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 90 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Y 90 (102)
..+-|+.+.|++++...|.++.++++++-- |+.++.....+.++++. +- ++..+++.-
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qr-L~~~gk~L~d~~tL~~~----~i~~g~~i~l~~ 74 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPVANQR-LIYSGKILKDDQTVESY----HIQDGHSVHLVK 74 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBTGGG----TCCTTCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCHHHEE-EEECCeEcCCCCCHHHc----CCCCCCEEEEEE
Confidence 456699999999999999999999875433 33466544556666553 22 344676654
No 40
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=74.66 E-value=11 Score=25.08 Aligned_cols=61 Identities=11% Similarity=0.173 Sum_probs=42.4
Q ss_pred eEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 9 RYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 9 ~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
+.|.++.+...+ ....|.|.++.++..++....+|.+++.++--|+|=+..+ ..++|..+|
T Consensus 39 ~~I~LKV~~qdg-----~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI-~~~~TP~dL 99 (115)
T 3kyd_D 39 EYIKLKVIGQDS-----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKEL 99 (115)
T ss_dssp CEEEEEEECTTS-----CEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC-CTTCCTTTT
T ss_pred CeEEEEEEcCCC-----CEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC-CCCCCHHHc
Confidence 456666655322 2357899999999999999999999998876677643333 334555444
No 41
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=74.42 E-value=11 Score=23.56 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=43.1
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 93 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 93 (102)
..+-|+.+.|++++...|.++.++++++- -|+.++.....+.++++. .-+ ++..|++.....
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~y--gI~-~gstI~l~~r~~ 95 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQL-VLIFAGKILKDPDSLAQC--GVR-DGLTVHLVIKRQ 95 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBHHHH--TCC-TTCEEEEEECCC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhE-EEEECCEECCCcCcHHHC--CCC-CCCEEEEEEcCC
Confidence 35669999999999999999999987543 334466655667788765 122 344777766543
No 42
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=73.97 E-value=14 Score=23.42 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=44.3
Q ss_pred eeEEEecCCcchHhHHHHHHHHhcCCCcceEEE-EEcC-c---CCCCCchHH---HHHhhccCCCCeEEE
Q 034167 27 NYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDN-V---LPPTGAIMS---AIYEEKKDEDGFLYV 88 (102)
Q Consensus 27 k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFl-yVnn-~---lp~~~~~m~---~lY~~~kd~DGfLyl 88 (102)
-..+.+|.+.++.++..-+|.+.++.+++.+-+ |++. . .-+.|+.+. ++|+-.+|..=.||+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 446779999999999999999999988887766 5553 2 346666664 577777754333443
No 43
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=73.88 E-value=5.7 Score=24.12 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=43.6
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 93 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 93 (102)
..+-|+.+.||+++...|.++.++++++- -|+.++.....+.+++++ .-+ ++..|++.....
T Consensus 14 ~~~~v~~~~TV~~LK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~r~~ 75 (96)
T 3k9o_B 14 ITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NIQ-KESTLHLVLRLR 75 (96)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTGGG--TCC-TTCEEEEEECCC
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhHE-EEEECCEECCCCCcHHHc--CCC-CCCEEEEEEEcC
Confidence 34569999999999999999999987643 344566655667777763 122 355788876543
No 44
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=73.84 E-value=6.5 Score=23.51 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=34.3
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHH
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 74 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~ 74 (102)
.+-|+.+.|++++...|..+.++++++--.+ .++.....+.++++
T Consensus 31 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 31 TFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-YQGRVLQDDKKLQE 75 (88)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGG
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCCCcHHH
Confidence 4568999999999999999999987644333 46666666777766
No 45
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=73.09 E-value=5.9 Score=24.37 Aligned_cols=61 Identities=10% Similarity=0.089 Sum_probs=42.0
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 93 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 93 (102)
.+-|+.+.|++++...|.++.++++++-- |+.++.....+.++++. .-+ ++..+++.....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~qr-L~~~Gk~L~D~~tL~~~--gi~-~g~~i~l~~~~~ 74 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY--NIQ-KESTLHLVLRLR 74 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGGEE-EEETTEECCTTSBTGGG--TCC-TTCEEEEEECCC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEE-EEECCEECCCCCCHHHc--CCC-CCCEEEEEEeCC
Confidence 45689999999999999999999876433 34466544556676653 112 455788777643
No 46
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.96 E-value=13 Score=23.18 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=42.8
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 93 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 93 (102)
..+-|+.+.||++|...|.++.++++++- -|+.++.....+.+++++ .-+ ++..|+|.....
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~--gi~-~g~~i~l~~~~~ 90 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQL-VLIFAGKILKDPDSLAQC--GVR-DGLTVHLVIKRQ 90 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTE-EEEETTEECCTTSCHHHH--TCC-TTEEEEEEECCC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhE-EEEECCEECCCcCcHHHc--CCC-CCCEEEEEEcCC
Confidence 35669999999999999999999986543 344566655667787765 122 344777776543
No 47
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=72.48 E-value=16 Score=23.37 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=42.1
Q ss_pred ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCC-CeEEEEe
Q 034167 26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDED-GFLYVTY 90 (102)
Q Consensus 26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~D-GfLyl~Y 90 (102)
++..+-+.++.|+++|...|..+.++++++---.| ++.....+.+++ .|+=.| .-|.+-|
T Consensus 32 kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~----dY~I~dgstLhL~~ 92 (93)
T 3plu_A 32 KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE----DYEVHDQTNLELYY 92 (93)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG----GGTCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH----HcCCCCCCEEEEEe
Confidence 44557799999999999999999999987654455 556666666774 343223 3566655
No 48
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=71.74 E-value=4.6 Score=25.74 Aligned_cols=73 Identities=16% Similarity=0.317 Sum_probs=46.4
Q ss_pred EEEEeecCCCCCCCcceeEEEec-CCcchHhHHHHHHHHhcCCC-cceEEEEEcCc------------C---CCCCchHH
Q 034167 11 LILSYTNKVSSLPECENYRYLVP-ADLTVGQFVYVIRKRIKLSA-EKAIFIFVDNV------------L---PPTGAIMS 73 (102)
Q Consensus 11 Ii~~~~~~~~~~P~L~k~KflVp-~~~tv~~f~~~lRk~L~l~~-~~slFlyVnn~------------l---p~~~~~m~ 73 (102)
+++|.+...| +...-|. .+.|+++|..-|..+.++++ .+.|++ ++. + ...+.+++
T Consensus 8 M~irvrs~~G------~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~ 79 (107)
T 1wf9_A 8 TMLRVRSRDG------LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRIS 79 (107)
T ss_dssp EEEEEECSSC------EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGG
T ss_pred EEEEEECCCC------CEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE--CCccccccCccccccccccCCCCCCHH
Confidence 4567666443 2234588 89999999999999999875 455543 322 1 23445666
Q ss_pred HHHhhccCCCCeEEEEecCCc
Q 034167 74 AIYEEKKDEDGFLYVTYSGEN 94 (102)
Q Consensus 74 ~lY~~~kd~DGfLyl~Ys~~~ 94 (102)
++= -+ .+..||+.|..+.
T Consensus 80 ~~g--i~-~G~~L~l~~~~~~ 97 (107)
T 1wf9_A 80 SLN--LA-HGSMVYLAYEGER 97 (107)
T ss_dssp GTC--CC-TTCEEECCCSSCC
T ss_pred HCC--CC-CCCEEEEEeCCCC
Confidence 432 12 2348999988664
No 49
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=71.69 E-value=6.9 Score=23.69 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=38.8
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEE
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVT 89 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~ 89 (102)
.+-|+.+.||+++...|.++.++++++-- |+.++.....+.++++. . -+ ++..+++.
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~Gk~L~D~~tL~~~-g-i~-~g~~i~l~ 87 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY-N-IQ-KESTLHLV 87 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTCBTGGG-T-CC-TTCEEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhEE-EEECCeECCCcCcHHHC-C-CC-CCCEEEEE
Confidence 45699999999999999999999875432 33466655666777663 1 12 34466654
No 50
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=71.24 E-value=6 Score=24.51 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=39.9
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEe
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 90 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Y 90 (102)
..+-|+.+.||+++...|.++.++++++-- |+.++.....+.++++. .- ++..|++..
T Consensus 35 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~----~i~~g~~i~l~~ 93 (98)
T 4hcn_B 35 ITLEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVL 93 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTCBSGGG----TCCTTEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChhHEE-EEECCEECCCCCcHHHC----CCCCCCEEEEEE
Confidence 345699999999999999999999875433 33466655666677653 22 344666654
No 51
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.12 E-value=4.2 Score=26.29 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=36.7
Q ss_pred eeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 27 NYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 27 k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
...|.|.++.++..++....++.++++++--|+|=+..+ ..+.|..++
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l-~~~~Tp~dl 83 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 83 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC-CTTSCTTTT
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 456889999999999999999999998766666644443 455566554
No 52
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=70.04 E-value=7.5 Score=23.56 Aligned_cols=60 Identities=3% Similarity=-0.042 Sum_probs=41.8
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
.+-|+.+.|++++...|..+.++++++--. +.++.....+.++++. .-+ ++..|++....
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk~L~D~~tL~~~--~i~-~g~~l~l~~rl 73 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRL-IYSGKQMNDEKTAADY--KIL-GGSVLHLVLAL 73 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCEE-EETTEECCTTSBTTTT--TCC-TTCEEEEECBC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEEE-EECCeECCCCCcHHHc--CCC-CCCEEEEEEEC
Confidence 456899999999999999999998754333 3466655667777764 122 34477777654
No 53
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=69.73 E-value=7 Score=23.68 Aligned_cols=59 Identities=8% Similarity=0.119 Sum_probs=38.8
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEec
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 91 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys 91 (102)
..+-|+.+.|++++...|.++.++++++-- |+.++.....+.++++. +- ++..+++...
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~r 81 (88)
T 1sif_A 22 FTVEMEPSDTIENLKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 81 (88)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBSGGG----TCCTTCEEEEEC-
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChhhEE-EEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 345589999999999999999999875433 33466544556666553 22 3446776554
No 54
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.39 E-value=10 Score=23.06 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=39.6
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCC-CCeEEEEec
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE-DGFLYVTYS 91 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~-DGfLyl~Ys 91 (102)
.+-|+.+.|++++...|.++.++++++--.+ .++.....+.++++. .-. +..|++...
T Consensus 30 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 30 EFFLAENSNVRRFKKQISKYLHCNADRLVLI-FTGKILRDQDILSQR----GILDGSTVHVVVR 88 (96)
T ss_dssp EEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ETTEECCTTSCHHHH----TCCTTEEEECCBC
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCcCCHHHC----CCCCCCEEEEEEe
Confidence 4568999999999999999999986543333 355555667788774 222 335666543
No 55
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=67.94 E-value=6.7 Score=22.76 Aligned_cols=57 Identities=7% Similarity=-0.016 Sum_probs=38.2
Q ss_pred EEE-ecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEe
Q 034167 29 RYL-VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 90 (102)
Q Consensus 29 Kfl-Vp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Y 90 (102)
.+- |+.+.|++++...|.++.++++++--. +.++.....+.++++. +- ++..|++..
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL-~~~g~~L~d~~tL~~~----~i~~g~~i~l~~ 75 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQRL-FYRGKQMEDGHTLFDY----EVRLNDTIQLLV 75 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEE-EETTEECCTTCBTTTT----TCCTTCEEEEEE
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhEEE-EECCEECCCCCCHHHc----CCCCCCEEEEEE
Confidence 355 899999999999999999998764333 3465544556666543 22 344676654
No 56
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=67.80 E-value=21 Score=22.86 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=46.5
Q ss_pred CCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcC-cCCCCCchHHHHHhhccC
Q 034167 22 LPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKD 81 (102)
Q Consensus 22 ~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn-~lp~~~~~m~~lY~~~kd 81 (102)
=|.|--+..-||++..+..++.+--...+.++..+- +.-|. .=-.++++-|++|=+|..
T Consensus 20 dpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsA-iiT~dGiGInP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 20 DPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSA-IITNDGIGINPAQTAGNVFLKHGS 79 (92)
T ss_dssp STTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEE-EECTTSCCCCCSSBHHHHHHHTCS
T ss_pred CCCCCceEEecCccCchHHHHHHHHHHcCCCccceE-EEecCCcccChhhccchhhhhcCc
Confidence 345555667799999999999999999999987763 33344 446888999999999974
No 57
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=67.67 E-value=17 Score=21.89 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=39.4
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcC-CCCCchHHHHHhhccCCCCeEEEEe
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAIYEEKKDEDGFLYVTY 90 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~l-p~~~~~m~~lY~~~kd~DGfLyl~Y 90 (102)
..-|+.+.|++++...|..+.++++++-- |+.++.. ...+.++++.= -+ ++..|++..
T Consensus 24 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~lL~D~~tL~~y~--I~-~gs~i~lv~ 82 (84)
T 2kk8_A 24 ELEVDYRDTLLVVKQKIERSQHIPVSKQT-LIVDGIVILREDLTVEQCQ--IV-PTSDIQLEV 82 (84)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEE-EEETTEECCCSSSBHHHHT--CC-TTSCEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEE-EEECCEEecCCcCCHHHcC--CC-CCCEEEEEE
Confidence 34589999999999999999999875432 3345654 66777887641 12 344566543
No 58
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=65.71 E-value=22 Score=22.20 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=41.9
Q ss_pred EEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 10 YLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 10 vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
-|.++.+...+ +...|.|.++.+++.++...+++.++++++--|+|= +.....++|..++
T Consensus 7 ~i~ikVk~~~g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd-G~~l~~~~Tp~dl 66 (94)
T 2io1_B 7 HINLKVAGQDG-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD-GQPINETDTPAQL 66 (94)
T ss_dssp EEEEEEECTTS-----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET-TEECCTTCCTTTT
T ss_pred eEEEEEECCCC-----CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC-CEEcCCCCCHHHc
Confidence 35555554322 345788999999999999999999999876666664 4333445566554
No 59
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=64.98 E-value=11 Score=23.81 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=39.7
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEec
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 91 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys 91 (102)
.+-|+.+.|++++...|.++.++++++-- |+.++.....+.++++. .- ++..|++...
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~----gI~~gs~I~l~~r 107 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 107 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCSSCBTTTT----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccEE-EEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 45699999999999999999999876443 33466544556666553 22 3446777653
No 60
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=64.87 E-value=20 Score=25.53 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=43.2
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCc--ceEEEEEc-Cc---CCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAE--KAIFIFVD-NV---LPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~--~slFlyVn-n~---lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
....+++..|+.++...+++.++++++ -.|+.+-+ ++ +-..+.+|.++. -.+|..+.|-...
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~---l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAG---LYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHT---CCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhC---CCCCCEEEEEEec
Confidence 346789999999999999999999875 55665543 43 345566787753 3345566666653
No 61
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.21 E-value=20 Score=22.41 Aligned_cols=60 Identities=12% Similarity=0.021 Sum_probs=41.5
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEecCC
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 93 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys~~ 93 (102)
.+-|+.+.|++++...|.++.++++++--.+ .++.....+.++++. +- ++..|++.....
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~y----gI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPLTDKMKFEEL----KIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTEECCTTSHHHHC----CCSSSCEEEEECCCS
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHHc----CCCCCCEEEEEEeCC
Confidence 4569999999999999999999986543333 356555566677653 22 345788876544
No 62
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=63.92 E-value=10 Score=23.75 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=40.3
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEec
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 91 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys 91 (102)
..+-|+.+.|++++...|.++.++++++-- |+.++.....+.++++. +- ++..|++...
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~----gI~~g~~I~l~~~ 96 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFKSHTDQLV-LIFAGKILKDQDTLSQH----GIHDGLTVHLVIK 96 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTCCGGGEE-EEETTEEECTTCCTGGG----TCCTTCEEEEEEC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhhEE-EEECCEECCCcCcHHHc----CCCCCCEEEEEEc
Confidence 446699999999999999999999875433 33466544556666553 22 3446777654
No 63
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=63.91 E-value=14 Score=22.82 Aligned_cols=61 Identities=10% Similarity=-0.000 Sum_probs=41.1
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCC-chHHHHHhhccCCCCeEEEEecC
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~-~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
...-|+.+.|++++...|..+.++++++-- |+.++.....+ .++++.= -+ ++..|++....
T Consensus 27 ~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~~tL~~yg--I~-~gstl~lv~r~ 88 (94)
T 2kan_A 27 FTVEVDRTETVSSLKDKIHIVENTPIKRMQ-LYYSGIELADDYRNLNEYG--IT-EFSEIVVFLKS 88 (94)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSSSCTTTEE-EEETTEEECCTTSBHHHHT--CC-TTEEEEEEECC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCEECCCCcccHHHCC--CC-CCCEEEEEEeC
Confidence 345699999999999999999999865432 33456544555 7777641 12 34477776554
No 64
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=63.63 E-value=11 Score=23.98 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=40.6
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
..+-|+.+.||+++...|.++.++++++- -|+.++.....+.+++++ . -+ ++..|++...
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~-g-I~-~gs~I~l~~r 107 (111)
T 3vdz_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY-N-IQ-KESTLHLVLR 107 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTTTT-T-CC-TTCEEEEEEC
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHHC-C-CC-CCCEEEEEEe
Confidence 34569999999999999999999987543 333466655566677663 1 12 3446776543
No 65
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=63.51 E-value=16 Score=23.03 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=42.0
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecCCc
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGEN 94 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~~ 94 (102)
.+-|+.+.||++|...|.++.++++++-- |+.++.....+.+++++ .-+ ++..|++..+...
T Consensus 15 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~~--~i~-~g~~i~lv~~~~~ 76 (106)
T 3m62_B 15 PLDLEPSNTILETKTKLAQSISCEESQIK-LIYSGKVLQDSKTVSEC--GLK-DGDQVVFMVSQKK 76 (106)
T ss_dssp EECCCTTSBHHHHHHHHHHTTTSCGGGCE-EEETTEECCTTSBTTTT--TCC-TTCEEEEECCC--
T ss_pred EEEECCCCcHHHHHHHHHHHHCCChhhEE-EEECCEECCCcCCHHHc--CCC-CCCEEEEEEcCCC
Confidence 34589999999999999999999865433 33466655667777764 222 3457888765443
No 66
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=63.36 E-value=7.2 Score=22.88 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=18.4
Q ss_pred HHHHHHhcCCCcceEEEEEcC
Q 034167 43 YVIRKRIKLSAEKAIFIFVDN 63 (102)
Q Consensus 43 ~~lRk~L~l~~~~slFlyVnn 63 (102)
.-+|++|++.+++.|.+.+.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 568999999999999998864
No 67
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=63.08 E-value=13 Score=22.48 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=37.3
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCc-ceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEe
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 90 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~-~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Y 90 (102)
..-|+.+.|++++...|.++.+++++ +.| +.++.....+.+++++ +- ++..|++..
T Consensus 25 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL--~~~Gk~L~D~~tL~~~----gi~~g~~l~l~~ 82 (85)
T 2kd0_A 25 PLSVSPDCTVKDLKSQLQPITNVLPRGQKL--IFKGKVLVETSTLKQS----DVGSGAKLMLMA 82 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCCCTTTCEE--EETTEECCTTCBTTTT----TCCTTEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEEE--EECCeECCCcCCHHHC----CCCCCCEEEEEE
Confidence 34589999999999999999999865 443 3466544556666543 22 233566643
No 68
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=62.97 E-value=25 Score=22.02 Aligned_cols=56 Identities=5% Similarity=-0.036 Sum_probs=36.3
Q ss_pred CcchHhHHHHHHHHh--cCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167 35 DLTVGQFVYVIRKRI--KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 93 (102)
Q Consensus 35 ~~tv~~f~~~lRk~L--~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 93 (102)
+.||+++...|..+. ++++++..=|+.++.....+.++++.= -+ ++..|++.-...
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~--i~-~g~~i~lv~~~~ 101 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYG--IQ-PGSTVHVLRKSW 101 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHT--CC-TTCEEEEEESSC
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcC--CC-CCCEEEEEeCCC
Confidence 599999999999999 888765122334555446677887651 22 233677665443
No 69
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=62.79 E-value=8.3 Score=23.82 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=27.0
Q ss_pred EEecCCcchHhHHHHHHHHhcCCC-cceEEEEE
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSA-EKAIFIFV 61 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~-~~slFlyV 61 (102)
-.+|.++||+++...|.+..++++ .+.|+++-
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 358999999999999999999986 56777664
No 70
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=61.91 E-value=6.4 Score=23.86 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCcceEEEEEcC-c---CCCCC---chHHHHHhhccCCCCeEEEEecCCcccCC
Q 034167 43 YVIRKRIKLSAEKAIFIFVDN-V---LPPTG---AIMSAIYEEKKDEDGFLYVTYSGENTFGS 98 (102)
Q Consensus 43 ~~lRk~L~l~~~~slFlyVnn-~---lp~~~---~~m~~lY~~~kd~DGfLyl~Ys~~~afG~ 98 (102)
.-+|++|++.+++.+.+.+.+ . .|... .++.++.+.+.+ | + |..+..||.
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~~-~-~----~~~e~~wg~ 75 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITP-E-N----LHENIDWGE 75 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTEEEEEEC----------------------------------
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhccc-c-c----cccccccCC
Confidence 457899999999999998864 3 25433 478899988864 3 2 234556763
No 71
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=59.78 E-value=15 Score=24.11 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=40.4
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEecC
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSG 92 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys~ 92 (102)
..+-|+.+.||+++...|.++.++++++-- |+.++.....+.++++ |+- ++..|+|....
T Consensus 44 ~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~d----ygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 44 EEFAVPENSSVQQFKEAISKRFKSQTDQLV-LIFAGKILKDQDTLIQ----HGIHDGLTVHLVIKR 104 (125)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCSCSSSEE-EEETTEEESTTSCGGG----TTCSSSEEEEEEEC-
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCcceEE-EEECCEEcCCCCCHHH----cCCCCCCEEEEEecc
Confidence 345689999999999999999999865433 3346654456667655 333 34467776654
No 72
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=59.62 E-value=9.9 Score=21.35 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=18.4
Q ss_pred HHHHHHhcCCCcceEEEEEcC
Q 034167 43 YVIRKRIKLSAEKAIFIFVDN 63 (102)
Q Consensus 43 ~~lRk~L~l~~~~slFlyVnn 63 (102)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 568999999999999998864
No 73
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=59.16 E-value=6.9 Score=24.65 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=32.7
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
+-|+.+.||+++...|.++.++++++--.+ .++.....+.++++.
T Consensus 42 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 42 VNVAPESTVLQFKEAINKANGIPVANQRLI-YSGKILKDDQTVESY 86 (101)
T ss_dssp BCCCTTSBHHHHHHHHHHHHSCCSTTCCEE-ETTEECCTTSBTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHCcChHHEEEE-ECCEECCCcCcHHHC
Confidence 358899999999999999999986533222 366655666677653
No 74
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=58.14 E-value=18 Score=24.41 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=33.4
Q ss_pred CCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEc
Q 034167 22 LPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD 62 (102)
Q Consensus 22 ~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVn 62 (102)
+|+..-....|..+.+|++++..|.+++++...+- |-++.
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 67778888999999999999999999999986544 55554
No 75
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=57.78 E-value=24 Score=21.35 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=39.7
Q ss_pred EecCCcchHhHHHHHHHHhcCCCcceEEE-E-EcCcCCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167 31 LVPADLTVGQFVYVIRKRIKLSAEKAIFI-F-VDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 93 (102)
Q Consensus 31 lVp~~~tv~~f~~~lRk~L~l~~~~slFl-y-Vnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 93 (102)
-|+.+.|+++|...|.++-++++++--.+ - .++.....+.+++++ .-+ ++..|+|--+.+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~--~i~-~g~~l~l~~~~~ 84 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL--KLK-PNTKIMMMGTRE 84 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH--TCC-TTEEEEEECCCS
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc--CCC-CCCEEEEEecCc
Confidence 47899999999999999999986533222 0 355555566778774 122 344677765544
No 76
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=57.31 E-value=24 Score=21.69 Aligned_cols=42 Identities=7% Similarity=0.041 Sum_probs=31.0
Q ss_pred cCCcchHhHHHHH-HHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 33 PADLTVGQFVYVI-RKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 33 p~~~tv~~f~~~l-Rk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
+++.|++++..-| ..+-++++++--. +.++.....+.++++.
T Consensus 21 ~~~~TV~~lK~~I~~~~~gip~~~QrL-i~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 21 SPSDTILQIKQHLISEEKASHISEIKL-LLKGKVLHDNLFLSDL 63 (87)
T ss_dssp CTTCBHHHHHHHHHHTTSCSSSTTEEE-EETTEECCTTCBHHHH
T ss_pred CCCCcHHHHHHHHHHHhcCCChHHEEE-EECCEECcCcCCHHHc
Confidence 4899999999999 7777887764433 3466666777888864
No 77
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=55.70 E-value=28 Score=22.90 Aligned_cols=60 Identities=8% Similarity=0.108 Sum_probs=41.4
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCc-ceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~-~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
.+-|+.+.|++++...|..+.+++++ +.|++|-++.....+.++++. .-+ ++..|++...
T Consensus 16 ~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y--~i~-~~~~l~l~~~ 76 (159)
T 3rt3_B 16 QVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ--GLG-PGSTVLLVVD 76 (159)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG--TCC-TTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc--CCC-CCCEEEEEcc
Confidence 34589999999999999999999985 444435355544667777653 112 3457777665
No 78
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=55.58 E-value=26 Score=21.11 Aligned_cols=58 Identities=9% Similarity=0.111 Sum_probs=38.8
Q ss_pred ecCCcchHhHHHHHHHHh--cCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167 32 VPADLTVGQFVYVIRKRI--KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 32 Vp~~~tv~~f~~~lRk~L--~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
|+.+.||+++...|..+. ++++++-- |+.++.....+.++++....-+ ++..|+|...
T Consensus 26 v~~~~TV~~lK~~I~~~~~~~i~~~~Qr-Li~~Gk~L~D~~tL~~~~~~i~-~~~~i~lv~~ 85 (93)
T 1wgd_A 26 GDRGWSVGHLKAHLSRVYPERPRPEDQR-LIYSGKLLLDHQCLRDLLPKQE-KRHVLHLVCN 85 (93)
T ss_dssp CCTTSCHHHHHHHHHHHSTTCCCTTTCE-EEETTEECCSSSCHHHHSCSSS-CSEEEEEECC
T ss_pred cCCCCcHHHHHHHHHHHhcCCCChHHeE-EEECCEECcCcCCHHHHhcCCC-CCCEEEEEeC
Confidence 559999999999999998 88764332 2345665566778887642223 3446776544
No 79
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=55.39 E-value=28 Score=20.19 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=39.3
Q ss_pred EEEecCCcchHhHHHHHHHH---hcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEecCC
Q 034167 29 RYLVPADLTVGQFVYVIRKR---IKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 93 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~---L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys~~ 93 (102)
.+-|+.+.|++++...|.++ -++++++- -|+.++.....+.++++. +- ++..+++..+..
T Consensus 19 ~~~v~~~~TV~~lK~~i~~~~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 19 KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQ-KLIYAGKILSDDVPIRDY----RIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCTTTCCGGGE-EEEETTEECCTTSBGGGG----CCCTTSEEEEEEC--
T ss_pred EEEECCCCCHHHHHHHHHhhccccCCCHHHe-EEEECCEECcCCCCHHHc----CCCCCCEEEEEEcCC
Confidence 45689999999999999998 45765433 333466555566677653 32 455788876554
No 80
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=55.34 E-value=12 Score=22.96 Aligned_cols=30 Identities=7% Similarity=-0.020 Sum_probs=25.3
Q ss_pred EecCCcchHhHHHHHHHHhcCCCc-ceEEEE
Q 034167 31 LVPADLTVGQFVYVIRKRIKLSAE-KAIFIF 60 (102)
Q Consensus 31 lVp~~~tv~~f~~~lRk~L~l~~~-~slFly 60 (102)
.++.+.|++++..-|..+-+++++ +.|.++
T Consensus 20 r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 20 RYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 489999999999999999999874 566554
No 81
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=54.90 E-value=5.4 Score=24.39 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=30.4
Q ss_pred EEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCC-cceEEE
Q 034167 11 LILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSA-EKAIFI 59 (102)
Q Consensus 11 Ii~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~-~~slFl 59 (102)
+++|++.+.| ..+.-|+.+.|++++...|.++++++. .+++++
T Consensus 5 m~lRvrs~~G------~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 5 IIIRVQSPDG------VKRITATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCCEEECSSE------EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EEEEEECCCC------CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 3567777543 223337888999999999999999873 445554
No 82
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=54.57 E-value=40 Score=23.41 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=26.3
Q ss_pred CCCcceeEEEecCCcchHhHHHHHHHHhcCCCc
Q 034167 22 LPECENYRYLVPADLTVGQFVYVIRKRIKLSAE 54 (102)
Q Consensus 22 ~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~ 54 (102)
-|.+ =+.+.||++.|+.+|-.+|+.-++-...
T Consensus 19 ~p~i-WRri~Vp~~~TL~~LH~vIq~afgw~~~ 50 (188)
T 2i1s_A 19 TPQI-WRRIQVPENYTFLDLHKAIQAVMDWEDY 50 (188)
T ss_dssp SSCE-EEEEEEETTCBHHHHHHHHHHHTTCCCC
T ss_pred CCCe-EEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 3544 3567899999999999999999998754
No 83
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.54 E-value=24 Score=21.89 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=38.0
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCC-chHHHHHhhccCCCCeEEEEec
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~-~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
.-|+.+.||++|...|..+.++++++-- |+.++.....+ .++++. .-+ ++..|+|.-.
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~gk~L~D~~~tL~~y--gI~-~g~~l~l~~~ 84 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQ-IVYMEQLLTDDHCSLGSY--GLK-DGDMVVLLQK 84 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBC-EEETTEEECCSSSBHHHH--TCC-TTEEEEECBC
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeE-EEECCEECCCCcccHHHC--CCC-CCCEEEEEEC
Confidence 4589999999999999999999865332 23455544444 567664 122 3446776654
No 84
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=54.25 E-value=20 Score=22.99 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=39.7
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
.+-|+.+.|++++...|.++.++++++--.+ .++.....+.++++. .-+ ++..|++....
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~-~~g~~L~d~~tL~~~--~i~-~~~~l~l~~~~ 73 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY--NIQ-KESTLHLVLRL 73 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGG--TCC-TTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeEEE-ECCeECcCcccHHHh--ccC-CCCeeEEEeec
Confidence 4568999999999999999999987644333 355544556666543 111 34467766543
No 85
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=53.35 E-value=23 Score=22.70 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=40.5
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
..+-|+.+.|++++...|.++.++++++--++ .++.....+.++++. .-+ ++..+++...
T Consensus 89 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~g~~L~d~~tL~~~--~i~-~~~~i~l~~r 148 (152)
T 3b08_A 89 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY--NIQ-KESTLHLVLR 148 (152)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGG--TCC-TTCEEEEEEC
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-ECCEECCCCCCHHHc--CCC-CCCEEEEEEe
Confidence 34568999999999999999999987644333 466544556666553 111 3447777654
No 86
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=53.33 E-value=11 Score=24.84 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCcceEEEEEcC-cCCCCCchHHHHHhhccC
Q 034167 52 SAEKAIFIFVDN-VLPPTGAIMSAIYEEKKD 81 (102)
Q Consensus 52 ~~~~slFlyVnn-~lp~~~~~m~~lY~~~kd 81 (102)
+++..|+|||.| .-+-..+.|.+++.+|++
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~ 51 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGK 51 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCC
Confidence 467889999998 344555678888888875
No 87
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=52.06 E-value=42 Score=21.17 Aligned_cols=59 Identities=8% Similarity=0.107 Sum_probs=40.4
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
+-|+.+.|++++...|..+.++++++--. +.++.....+.++++.- -+ ++..|+|....
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~QrL-~~~Gk~L~D~~tL~~y~--i~-~g~~i~lv~rl 108 (115)
T 1we7_A 50 FTLPLTDQVSVIKVKIHEATGMPAGKQKL-QYEGIFIKDSNSLAYYN--MA-SGAVIHLALKE 108 (115)
T ss_dssp EEECSCSBTHHHHHHHHHHSSCCTTTEEE-EETTEEECTTSBHHHHT--CC-SSCEEEEEECC
T ss_pred EEECCCCCHHHHHHHHHHHHCCChHHEEE-EECCEECCCCCCHHHCC--CC-CCCEEEEEEEc
Confidence 45999999999999999999998654333 33565445677887641 12 34477776644
No 88
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=51.89 E-value=9.9 Score=23.53 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.9
Q ss_pred EEecCCcchHhHHHHHHHHhcCC
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLS 52 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~ 52 (102)
..||.+.++.+|..-|++|+++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 46999999999999999999874
No 89
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=50.53 E-value=13 Score=27.35 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=37.9
Q ss_pred ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
+...|.|..+.++..++....+|.+++.++--|+| ++.-...++|..+|
T Consensus 67 ~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DGqRI~~ddTPeDL 115 (207)
T 3tix_A 67 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DGIEIQADQTPEDL 115 (207)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TTEECCSSCCTTTT
T ss_pred CEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCHHHc
Confidence 46779999999999999999999999987777877 44433345555554
No 90
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=49.79 E-value=11 Score=24.46 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=22.8
Q ss_pred eeEEEecCCcchHhHHHHHHHHhcCC
Q 034167 27 NYRYLVPADLTVGQFVYVIRKRIKLS 52 (102)
Q Consensus 27 k~KflVp~~~tv~~f~~~lRk~L~l~ 52 (102)
-...+||.+.++.+|..-|++|+++.
T Consensus 24 ~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 24 IFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 34556999999999999999999986
No 91
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.52 E-value=13 Score=24.04 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=27.6
Q ss_pred CCCcceEEEEEcCc--CCCC---CchHHHHHhhcc-C----CCCeEEEEecCCc
Q 034167 51 LSAEKAIFIFVDNV--LPPT---GAIMSAIYEEKK-D----EDGFLYVTYSGEN 94 (102)
Q Consensus 51 l~~~~slFlyVnn~--lp~~---~~~m~~lY~~~k-d----~DGfLyl~Ys~~~ 94 (102)
.+|++++ |||+|= -... ...|.+++++|. . ..||=+|.|.+.+
T Consensus 5 ~~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~e 57 (96)
T 2diu_A 5 SSGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQD 57 (96)
T ss_dssp CCCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHH
T ss_pred CCCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHH
Confidence 4567775 678771 1121 124778999995 2 3588888887654
No 92
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=54.60 E-value=3.6 Score=23.81 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=30.9
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
+-|+.+.|++++...|.++.++++++--.+| ++.....+.++++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVIF-AGKELPNHLTVQNC 59 (76)
Confidence 4588899999999999999998865433333 45444455566543
No 93
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=48.66 E-value=29 Score=22.14 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=40.6
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEecCC
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 93 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys~~ 93 (102)
+-|+.+.|++++...|..+.++++++-- |+.++.....+.++++. .- ++..|++.....
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~y----gI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIWAGKQLEDGRTLSDY----NIQRESTLHLVLRLR 83 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTTTT----TCCSSCEEEEEECCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEE-EEECCEECCCCCcHHHC----CCCCCCEEEEEEEcC
Confidence 4588999999999999999999876433 33455544556666553 22 345788876654
No 94
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=48.52 E-value=44 Score=20.92 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=27.3
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCc-ceEEEEE
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFV 61 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~-~slFlyV 61 (102)
...-|+.+.|++++..-|..+-+++++ +.|+++-
T Consensus 29 ~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 29 ADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred EEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 345699999999999999999999875 5555543
No 95
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=47.76 E-value=23 Score=25.57 Aligned_cols=37 Identities=8% Similarity=0.168 Sum_probs=31.9
Q ss_pred ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEc
Q 034167 26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD 62 (102)
Q Consensus 26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVn 62 (102)
+...|.|.++.++..++....+|.+++..+--|+|=+
T Consensus 39 ~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG 75 (200)
T 3pge_A 39 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG 75 (200)
T ss_dssp CEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETT
T ss_pred CEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECC
Confidence 4567999999999999999999999998877777743
No 96
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=47.62 E-value=31 Score=21.63 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=40.0
Q ss_pred eEEEecC-CcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 28 YRYLVPA-DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 28 ~KflVp~-~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
..+-|+. +.|++++...|..+.++++++-- |+.++.....+.++++. .-+ ++..|++....
T Consensus 43 ~~l~v~~l~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y--~I~-~g~~l~l~~r~ 104 (111)
T 1we6_A 43 MEITVQSLSENVGSLKEKIAGEIQIPANKQK-LSGKAGFLKDNMSLAHY--NVG-AGEILTLSLRE 104 (111)
T ss_dssp EEEEESCSSSBHHHHHHHHHHHTTCCTTTSE-EECSSSBCCTTSBTTTT--TCS-SSCEEEEECSS
T ss_pred EEEEecCCCCcHHHHHHHHHHHHCCCHHHeE-EEECCEECCCCCcHHHC--CCC-CCCEEEEEEEc
Confidence 3466898 99999999999999999865332 22355555556666543 112 34477776543
No 97
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=47.52 E-value=22 Score=22.71 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=32.3
Q ss_pred CCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCc
Q 034167 23 PECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV 64 (102)
Q Consensus 23 P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~ 64 (102)
|..++.+..|.++.++.|++..-.++.++++++- -|.-|++
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~-~Lkh~~k 57 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEY-DLKFQRT 57 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGC-EEEETTE
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhC-eEEeCCE
Confidence 3457899999999999999999999999987653 3434444
No 98
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=47.22 E-value=53 Score=21.15 Aligned_cols=72 Identities=17% Similarity=0.291 Sum_probs=46.3
Q ss_pred eeEEEEEeecCCCCCCCcceeEEEecC--CcchHhHHHHHHHHhcCCCc--ceEEEEEcCc-CCCCCchHHHHHhhccCC
Q 034167 8 TRYLILSYTNKVSSLPECENYRYLVPA--DLTVGQFVYVIRKRIKLSAE--KAIFIFVDNV-LPPTGAIMSAIYEEKKDE 82 (102)
Q Consensus 8 ~~vIi~~~~~~~~~~P~L~k~KflVp~--~~tv~~f~~~lRk~L~l~~~--~slFlyVnn~-lp~~~~~m~~lY~~~kd~ 82 (102)
.|..|--|+++ +. .-...+++|++ -.|+.+|+..|-++++++.+ ..||-. ++. +-+.+ + . +
T Consensus 13 ~pk~I~v~rNG--D~-~~~g~~v~i~~~~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~-~G~~V~~l~----d----l--~ 78 (108)
T 2dnf_A 13 EPCTIFLIANG--DL-INPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTL-EGKLVESGA----E----L--E 78 (108)
T ss_dssp CCEEEEECBTT--CS-SSCCEEEEECHHHHTCHHHHHHHHHHHCCCTTSSCCEEEET-TCCEESSTT----S----C--C
T ss_pred cceEEEEEeCC--CC-CCCCEEEEECCccccCHHHHHHHHHHhhCCCCCCEEEEEcC-CCCEeCCHH----H----h--C
Confidence 46677777763 33 33457778875 45999999999999999854 555532 332 33333 1 2 3
Q ss_pred CCeEEEEecCC
Q 034167 83 DGFLYVTYSGE 93 (102)
Q Consensus 83 DGfLyl~Ys~~ 93 (102)
||-.||+...|
T Consensus 79 dg~~YVa~g~E 89 (108)
T 2dnf_A 79 NGQFYVAVGRD 89 (108)
T ss_dssp SSCBEEEECSS
T ss_pred CCCEEEEeCCC
Confidence 66699998754
No 99
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=46.98 E-value=39 Score=22.13 Aligned_cols=60 Identities=7% Similarity=-0.041 Sum_probs=41.0
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
..+-|+.+.|++++...|..+.++++++--. +.++.....+.++++.- - .++..|++...
T Consensus 94 ~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L-~~~G~~L~d~~tL~~y~--i-~~g~~l~l~~r 153 (159)
T 3rt3_B 94 STYEVRLTQTVAHLKQQVSGLEGVQDDLFWL-TFEGKPLEDQLPLGEYG--L-KPLSTVFMNLR 153 (159)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGEEE-EETTEECCTTSBGGGGT--C-CTTCEEEEEEC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCHHHEEE-EECCeecCCCCCHHHcC--C-CCCCEEEEEEe
Confidence 3456999999999999999999998765433 34665555566766531 1 23457777654
No 100
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=46.30 E-value=61 Score=21.36 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=48.4
Q ss_pred eEEeeEEEEEeecCCCCCCCcceeEE-EecCCcchHhHHHHHHHHhcCCCc----ceEEEEEcC-c-C------CCCCch
Q 034167 5 TITTRYLILSYTNKVSSLPECENYRY-LVPADLTVGQFVYVIRKRIKLSAE----KAIFIFVDN-V-L------PPTGAI 71 (102)
Q Consensus 5 ~~~~~vIi~~~~~~~~~~P~L~k~Kf-lVp~~~tv~~f~~~lRk~L~l~~~----~slFlyVnn-~-l------p~~~~~ 71 (102)
.+-|-.|||...+.-+.=..-+.--| +||++..|.|++..-=.+|+.+.+ ..=-+-|+| + + +.++.|
T Consensus 7 mlPV~CVVE~~~~~~~~~~~~E~~syviI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~~itd~p~~T 86 (105)
T 3tuo_A 7 MLPVFCVVEHYENAIEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAPDAT 86 (105)
T ss_dssp EEEEEEEEEEECCCSSCCCEEEEEEEEEEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGGGTCCCTTCB
T ss_pred ceeeEEEEEecccccccccccceeeEEEEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHHHcCCCchhh
Confidence 35567789987663111111112234 699999999999999999998743 122455777 3 3 368889
Q ss_pred HHHHHhh
Q 034167 72 MSAIYEE 78 (102)
Q Consensus 72 m~~lY~~ 78 (102)
+|++-.+
T Consensus 87 V~d~L~e 93 (105)
T 3tuo_A 87 VADMLQD 93 (105)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9987654
No 101
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.66 E-value=44 Score=20.22 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=40.1
Q ss_pred EEEecCCcchHhHHHHHHHHh---cCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEecCCc
Q 034167 29 RYLVPADLTVGQFVYVIRKRI---KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGEN 94 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L---~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys~~~ 94 (102)
.+-|+.+.|++++...|.+++ ++++++-- |+.++.....+.++++. +- ++..|++......
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qr-Li~~Gk~L~D~~tL~~y----gI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQK-LIYAGKILNDDTALKEY----KIDEKNFVVVMVTKPK 78 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTEE-EEETTEECCTTSBGGGG----TCCSSSEEEEEESSCC
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhEE-EEECCEECCCcCcHHHC----CCCCCCEEEEEEeCCC
Confidence 456899999999999999984 57654332 33466555566677653 33 3457887765443
No 102
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.46 E-value=33 Score=21.77 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=40.7
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCcceEEEEEc-CcCCCCCchHHHHHhhccCCCCeEEEEecCCc
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGEN 94 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~~slFlyVn-n~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~~ 94 (102)
.-|+.+.|+++|...|..+-++++++--.++.. +. ...+.+++++ .-+ .+..|+|......
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~--~I~-~gstL~lvl~~~~ 84 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL--HLP-KNNSLYVLTPDLP 84 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH--CCC-SEEEEEECCSSSC
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc--CCC-CCCEEEEEecCCC
Confidence 448899999999999999999987543333322 34 4556677776 122 2347777665554
No 103
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=44.28 E-value=17 Score=24.30 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=23.7
Q ss_pred hcCCCcceEEEEEcC-cCCCCCchHHHHHhhccC
Q 034167 49 IKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKD 81 (102)
Q Consensus 49 L~l~~~~slFlyVnn-~lp~~~~~m~~lY~~~kd 81 (102)
+.-.++..|.+||.| .-+-..+.|.+++.+|+.
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 445578899999999 456667788888888875
No 104
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=43.83 E-value=37 Score=22.71 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=41.0
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
.+-|+.+.|++++...|..+.++++++-- |+.++.....+.++++. . -+ ++..|++....
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~Qr-L~~~g~~L~d~~tL~~~-~-i~-~~~~l~l~~~~ 93 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY-N-IQ-KESTLHLVLRL 93 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTGGG-T-CC-TTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEE-EEECCccccccCCHhHc-C-Cc-ccceeeeeecc
Confidence 45599999999999999999999875433 33466655667777763 1 11 34467766543
No 105
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=43.67 E-value=33 Score=21.56 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=33.6
Q ss_pred EEEecCCcchHhHHHHHHHHh--cCC-CcceEEEEEcCcCCCCCchHHHHHh
Q 034167 29 RYLVPADLTVGQFVYVIRKRI--KLS-AEKAIFIFVDNVLPPTGAIMSAIYE 77 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L--~l~-~~~slFlyVnn~lp~~~~~m~~lY~ 77 (102)
.+-|+.+.||+++...|..++ ..+ ..+.|. .++.....+.++++...
T Consensus 39 ~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI--y~Gk~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 39 TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV--YSGRLLPDHLQLKDILR 88 (99)
T ss_dssp EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE--ETTEEECTTSBTHHHHT
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE--ECCEECCCCCCHHHHhc
Confidence 345799999999999999876 443 455543 35665567788887643
No 106
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.22 E-value=51 Score=19.62 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=37.9
Q ss_pred EEEecCC-----cchHhHHHHHHHHhcCCCcceEEEEEcCc-CCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167 29 RYLVPAD-----LTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDEDGFLYVTYSGE 93 (102)
Q Consensus 29 KflVp~~-----~tv~~f~~~lRk~L~l~~~~slFlyVnn~-lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 93 (102)
.+-|+.+ .||++|...|.++.++++++--.+ .++. +...+.+++++ . -+ ++..|+|.-+..
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~-~~Gk~L~D~~~~L~~~-~-i~-~g~~i~l~~~~~ 86 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI-FKGKSLKEMETPLSAL-G-IQ-DGCRVMLIGKKN 86 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE-ETTEEECCSSSBHHHH-T-CC-SSEEEEEESCCS
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE-ECCeecCCCcccHHHC-C-CC-CCCEEEEEecCC
Confidence 4457775 999999999999999886533223 3554 43335578764 1 22 233666654433
No 107
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.11 E-value=22 Score=21.18 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=18.4
Q ss_pred EEEcCcCCCCCchHHHHHhhccC--------CCCeEEEEecCC
Q 034167 59 IFVDNVLPPTGAIMSAIYEEKKD--------EDGFLYVTYSGE 93 (102)
Q Consensus 59 lyVnn~lp~~~~~m~~lY~~~kd--------~DGfLyl~Ys~~ 93 (102)
|||.| +-...+.|.+++.+|.. ..||-+|.|.+.
T Consensus 18 l~V~n-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 18 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 59 (97)
T ss_dssp EEEEC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSH
T ss_pred EEEcC-CCCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCH
Confidence 34555 33344456666666642 256777777554
No 108
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=42.05 E-value=36 Score=21.79 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=32.4
Q ss_pred EeecCCCCCCCcceeEEEe-cCCcchHhHHHHHHHHhcCCCcceEEEEE
Q 034167 14 SYTNKVSSLPECENYRYLV-PADLTVGQFVYVIRKRIKLSAEKAIFIFV 61 (102)
Q Consensus 14 ~~~~~~~~~P~L~k~KflV-p~~~tv~~f~~~lRk~L~l~~~~slFlyV 61 (102)
-|..+.++.|++... +++ |+..|+.+|...|.+.|.-+ -.|-.|
T Consensus 14 VYtk~~G~~pd~~dp-viL~~~GsTv~Dfa~~IH~di~~~---fkyA~V 58 (93)
T 2eki_A 14 IYTKPKGQLPDYTSP-VVLPYSRTTVEDFCMKIHKNLIKE---FKYALV 58 (93)
T ss_dssp EEECCTTSCCCSSSC-EEEETTSCCHHHHHHHHCTTCTTT---EEEEEE
T ss_pred EEeCCCCCCCCCCCC-EEEecCCCCHHHHHHHHHHHHHhh---ccEEEE
Confidence 355557899999875 456 99999999999888776654 334455
No 109
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=41.73 E-value=73 Score=20.97 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=45.6
Q ss_pred ecCCcchHhHHHHHHHHhcCCCcc-eEEEEEcCcCCCCCchHHHHHhhccC------CCCeEEEEecCCcccC
Q 034167 32 VPADLTVGQFVYVIRKRIKLSAEK-AIFIFVDNVLPPTGAIMSAIYEEKKD------EDGFLYVTYSGENTFG 97 (102)
Q Consensus 32 Vp~~~tv~~f~~~lRk~L~l~~~~-slFlyVnn~lp~~~~~m~~lY~~~kd------~DGfLyl~Ys~~~afG 97 (102)
|..+.||+++...|..+.++++++ .|+ .+++....+.++++ |.-. + .+--|++.......|-
T Consensus 18 v~~sdTV~~lK~kI~~~egIP~~qQrLi--~~Gk~LeD~~TLsd-y~I~-~~~a~~q~~stL~L~lr~~g~fe 86 (118)
T 2fnj_B 18 AKESSTVFELKRIVEGILKRPPEEQRLY--KDDQLLDDGKTLGE-CGFT-SQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTSBHHH-HTCC-TTTSBTTBCEEEEEEEBSSSCBC
T ss_pred eCCcChHHHHHHHHHHHhCCCHHHeEEE--ECCeECCCCCCHHH-cCcc-cccccCCCCCEEEEEecCCCcee
Confidence 999999999999999999998754 443 46666677788987 3322 1 2457889888555554
No 110
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.23 E-value=32 Score=21.06 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=31.6
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCc-ceEEEEEcCcCCCCCchHHHH
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~-~slFlyVnn~lp~~~~~m~~l 75 (102)
.+-|+.+.||++|...|..+.+++++ +.|+ .++... .|.++++.
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~--~~Gk~L-dd~tL~~~ 74 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQKVM--YKGLVP-EDKTLREI 74 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCCCB--SSSBCC-SSSBHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCeeC-CcCcHHHC
Confidence 35599999999999999999999864 4443 354433 45566654
No 111
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=41.01 E-value=24 Score=21.18 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=27.8
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCc
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 70 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~ 70 (102)
..=+|+..|+++++ ++|++++++. -+.+|+...+.|+
T Consensus 14 ~~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 14 EVAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EEECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred eEEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 35689999998855 6789998887 4778987555554
No 112
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=40.25 E-value=56 Score=21.00 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=40.0
Q ss_pred ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
+...|.|..+..+..++...-+|.+++.+.-.|||=+..+ +.++|-.+|
T Consensus 31 ~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI-~~~~TP~~L 79 (95)
T 2l76_A 31 DLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETEL-SPTATPRTL 79 (95)
T ss_dssp SEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEEC-CTTSCHHHH
T ss_pred cEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCC-CCCCCHhHc
Confidence 4567889999999999999999999999988888755444 556666776
No 113
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.13 E-value=25 Score=22.60 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=43.1
Q ss_pred EecCCcchHhHHHHHHHHhcCCCc--------------ceEEEEEcCcC-CCCCchHHHHHhhccCCCCeEEEEecCCcc
Q 034167 31 LVPADLTVGQFVYVIRKRIKLSAE--------------KAIFIFVDNVL-PPTGAIMSAIYEEKKDEDGFLYVTYSGENT 95 (102)
Q Consensus 31 lVp~~~tv~~f~~~lRk~L~l~~~--------------~slFlyVnn~l-p~~~~~m~~lY~~~kd~DGfLyl~Ys~~~a 95 (102)
-|+.+.||+++...|.++.++++. +..-|..++.. -..+.+|++ |. =+ ++.+|++.-.....
T Consensus 23 ~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d-yg-I~-~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 23 VVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD-YG-IR-NRDEVSFIKKLGQK 99 (105)
T ss_dssp EECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH-HT-CC-SSEEEEEEECSCSC
T ss_pred EECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH-cC-CC-CCCEEEEEehhccC
Confidence 389999999999999999887652 12344445554 345578887 32 22 35588887776665
Q ss_pred cC
Q 034167 96 FG 97 (102)
Q Consensus 96 fG 97 (102)
.|
T Consensus 100 ~~ 101 (105)
T 1v2y_A 100 SG 101 (105)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 114
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=40.06 E-value=20 Score=22.78 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=23.9
Q ss_pred EEEEcCcCCCCCchHHHHHhhccCC--------CCeEEEEecCCc
Q 034167 58 FIFVDNVLPPTGAIMSAIYEEKKDE--------DGFLYVTYSGEN 94 (102)
Q Consensus 58 FlyVnn~lp~~~~~m~~lY~~~kd~--------DGfLyl~Ys~~~ 94 (102)
-|||.| +....+.|.+++..|+.. -||-+|.|.+.+
T Consensus 41 ~lfVgn-l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~ 84 (121)
T 2bz2_A 41 TLYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKME 84 (121)
T ss_dssp EEEEEC-SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHH
T ss_pred EEEEcC-CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHH
Confidence 355666 555566778888888642 578888886643
No 115
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.91 E-value=72 Score=20.34 Aligned_cols=48 Identities=8% Similarity=0.060 Sum_probs=36.8
Q ss_pred ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHH
Q 034167 26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 74 (102)
Q Consensus 26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~ 74 (102)
++...-|+.+.||+++..-|..+.++++++--.+ .++.....+.+|++
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI-~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIKIV-INKKQLQLGKTLEE 77 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-ETTEECCTTSBHHH
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE-eCCeECCCCCcHHH
Confidence 3344559999999999999999999987654333 56666677888876
No 116
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=39.66 E-value=17 Score=29.59 Aligned_cols=51 Identities=8% Similarity=0.127 Sum_probs=38.8
Q ss_pred eeEEEecCCcchHhHHHHHHHHhcCCC--cceEEEE--EcCc---CCCCCchHHHHHh
Q 034167 27 NYRYLVPADLTVGQFVYVIRKRIKLSA--EKAIFIF--VDNV---LPPTGAIMSAIYE 77 (102)
Q Consensus 27 k~KflVp~~~tv~~f~~~lRk~L~l~~--~~slFly--Vnn~---lp~~~~~m~~lY~ 77 (102)
+-.++||++-||++++.-++++.++++ ...|-++ .|+. ..+.+..+.+|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d 410 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP 410 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence 777889999999999999999999974 3334332 3443 5678888888876
No 117
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=39.38 E-value=50 Score=21.34 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=35.5
Q ss_pred eeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHH
Q 034167 27 NYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 74 (102)
Q Consensus 27 k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~ 74 (102)
...+-|.++.|++++..-|..+.+++++.-= ++.++.+...+.++++
T Consensus 38 ~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 38 TIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred eEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 4445689999999999999999999975433 3345667666777765
No 118
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=38.55 E-value=55 Score=22.32 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=41.6
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
.+-|+.+.|++++...|.++.++++++-- |+.++.....+.++++. .-+ ++..|++....
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y--~I~-~gstI~Lvlrl 73 (169)
T 3l0w_B 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY--NIQ-KESTLHLVLRL 73 (169)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCTTSBGGGG--TCC-TTCEEEEEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCHHHEE-EEECCccccCcCcHHHc--CCC-CCCEEEEEEEe
Confidence 45689999999999999999999876543 33466555667777764 112 34477776653
No 119
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=38.48 E-value=41 Score=23.30 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=22.6
Q ss_pred CCcceEEEEEcCc-CCCCCchHHHHHhhccC
Q 034167 52 SAEKAIFIFVDNV-LPPTGAIMSAIYEEKKD 81 (102)
Q Consensus 52 ~~~~slFlyVnn~-lp~~~~~m~~lY~~~kd 81 (102)
+++..+.|||.|- -+-..+.|.+++.+|++
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~ 72 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 72 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSC
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCC
Confidence 4667888999983 45566688999999864
No 120
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=37.89 E-value=34 Score=27.71 Aligned_cols=61 Identities=11% Similarity=0.243 Sum_probs=44.8
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCcceEEEEEc---Cc--CCC-CCchHHHHHhhccCCCCeEEEEec
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NV--LPP-TGAIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~~slFlyVn---n~--lp~-~~~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
..|+.+.+++++...||++++++++..|-||=. +. ... ++.++.+.+++-.|.| .|+.+=.
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~Gd-II~fQ~~ 217 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGD-IIVFQKD 217 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTE-EEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCC-EEEEEec
Confidence 569999999999999999999999988877742 11 123 6778888876665433 5655543
No 121
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=36.98 E-value=38 Score=19.69 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=24.6
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCc
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 70 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~ 70 (102)
.+-++...|+++++.. |+++++ .+.+.+|+...+.++
T Consensus 17 ~~~~~~~~tv~~Ll~~----l~~~~~-~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGE----LEIPIE-TVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEEESSCCBHHHHHHH----TTCCTT-TEEEEETTEECCTTS
T ss_pred eEECCCCCcHHHHHHH----hCCCCC-CEEEEECCEECCCcc
Confidence 3567888899987654 466654 456889986544443
No 122
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=36.84 E-value=91 Score=20.68 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=50.2
Q ss_pred ceeEEE-ecCCcchHhHHHHHHHHhcCCC------------------cceEEEEEc-C--cCCCCCchHHHHHhhccCCC
Q 034167 26 ENYRYL-VPADLTVGQFVYVIRKRIKLSA------------------EKAIFIFVD-N--VLPPTGAIMSAIYEEKKDED 83 (102)
Q Consensus 26 ~k~Kfl-Vp~~~tv~~f~~~lRk~L~l~~------------------~~slFlyVn-n--~lp~~~~~m~~lY~~~kd~D 83 (102)
.+.+|+ -+.+.||.++-+.|.-||.|+. +-.||+.-+ + +..+.++++.++-++|=-.+
T Consensus 21 ~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L~gs~tLe~VneKywkvn 100 (111)
T 3gs2_A 21 AQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVLDGSFSLELVSEKYWKVN 100 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEECCTTSBHHHHHHHHTCSS
T ss_pred hceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEEccCcccHHHHhhhhccCC
Confidence 466777 7899999999999998887662 223444433 2 25789999999999994467
Q ss_pred CeEEEEecC
Q 034167 84 GFLYVTYSG 92 (102)
Q Consensus 84 GfLyl~Ys~ 92 (102)
-=|-|-||-
T Consensus 101 kplelYYa~ 109 (111)
T 3gs2_A 101 KPMELYYAP 109 (111)
T ss_dssp SCEEEEEEE
T ss_pred CCeeEEecc
Confidence 888888874
No 123
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=36.67 E-value=30 Score=20.55 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=23.0
Q ss_pred EEEcCcCC-CCCchHHHHHhhccC---------CCCeEEEEecCCc
Q 034167 59 IFVDNVLP-PTGAIMSAIYEEKKD---------EDGFLYVTYSGEN 94 (102)
Q Consensus 59 lyVnn~lp-~~~~~m~~lY~~~kd---------~DGfLyl~Ys~~~ 94 (102)
|||+|--+ ..++.|.+++.+|+. .-||-+|.|.+.+
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 45655222 344578888888864 2488888887654
No 124
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=36.04 E-value=32 Score=21.36 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=22.9
Q ss_pred EEEcCc-CCCCCchHHHHHhhccC-------CCCeEEEEecCCc
Q 034167 59 IFVDNV-LPPTGAIMSAIYEEKKD-------EDGFLYVTYSGEN 94 (102)
Q Consensus 59 lyVnn~-lp~~~~~m~~lY~~~kd-------~DGfLyl~Ys~~~ 94 (102)
|||.|- .-...+.|.+++.+|.+ .|||-+|.|.+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 455552 22355678888888864 2388888887654
No 125
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=35.46 E-value=44 Score=29.50 Aligned_cols=50 Identities=10% Similarity=0.271 Sum_probs=35.6
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCc-----ceEEEEEcCcCC------CCCchHHHHHhhcc
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAE-----KAIFIFVDNVLP------PTGAIMSAIYEEKK 80 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~-----~slFlyVnn~lp------~~~~~m~~lY~~~k 80 (102)
++-|+.++|+.+|+..+++++++... .+ -||- ..+| ..+.+|.+|++.-.
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~-~ly~-~~~~~~~~~~~l~~~l~~l~~~~~ 981 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVS-LLYA-SFFPPKKLKERLNLPITQLVKLVT 981 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTE-EEEE-TTCCHHHHHHHTTSBHHHHHHHHS
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCc-EEEe-cCCCchhhHHhccCCHHHHHHhhc
Confidence 56787899999999999999887533 11 1333 2344 46788999998753
No 126
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.35 E-value=42 Score=20.37 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=12.4
Q ss_pred chHHHHHhhccC-------CCCeEEEEecCC
Q 034167 70 AIMSAIYEEKKD-------EDGFLYVTYSGE 93 (102)
Q Consensus 70 ~~m~~lY~~~kd-------~DGfLyl~Ys~~ 93 (102)
+.|.+++.+|.+ .|||=+|.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~ 60 (108)
T 1x4c_A 30 QDLKDHMREAGDVCYADVYRDGTGVVEFVRK 60 (108)
T ss_dssp HHHHHHHGGGSCEEEEEEETTTEEEEEESSH
T ss_pred HHHHHHHHhcCCEeEEEEecCCEEEEEECCH
Confidence 345555555542 136666666554
No 127
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=34.23 E-value=48 Score=23.42 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=40.2
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCc-ceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~-~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
.+-|+.+.||+++...|..+.+++++ +.|+ .++.....+.++++. .-+ ++..|+|.-.
T Consensus 119 ~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi--~~Gk~L~D~~tL~dy--gI~-~gstI~Lvlr 177 (189)
T 3q3f_A 119 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDY--NIQ-KESTLHLVLR 177 (189)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEE--ETTEECCTTCBGGGG--TCC-TTCEEEECCC
T ss_pred EEEeCCCCcHHHHHHHHHhccCCCHHHEEEE--ECCEECCCCCCHHHC--CCC-CCCEEEEEEE
Confidence 35599999999999999999999865 4433 466655667777764 112 3446776654
No 128
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=34.19 E-value=8.5 Score=25.11 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY 59 (128)
T ss_dssp ----------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEE-ECCEECCCCCchhhh
Confidence 458899999999999999988886543233 355544556666653
No 129
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=33.75 E-value=35 Score=20.33 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=35.7
Q ss_pred ecCCcchHhHHHHHHHHhcCCCc-ceEEEEEc-Cc-CC-C-CCchHHHHHhhccCCCCeEEEEecC
Q 034167 32 VPADLTVGQFVYVIRKRIKLSAE-KAIFIFVD-NV-LP-P-TGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 32 Vp~~~tv~~f~~~lRk~L~l~~~-~slFlyVn-n~-lp-~-~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
++.+.|++++...|.++.+++++ +.| +|-. .+ +. + .+.+++++= -+ ....|++....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL-~~~~p~k~l~l~~~~~tL~~~g--l~-~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRI-LVGYPPECLDLSDRDITLGDLP--IQ-SGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCC-EESSCCCCCCCCCSSCBTTTSS--CC-TTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEE-EeCCCCcccccCCCCCCHHHcC--CC-CCCEEEEEeCC
Confidence 78899999999999999998753 444 3321 12 22 2 455666541 12 23477777664
No 130
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=32.66 E-value=39 Score=24.29 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=40.3
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCc--ceEEEEEcC-c---CCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAE--KAIFIFVDN-V---LPPTGAIMSAIYEEKKDEDGFLYVTYSG 92 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~--~slFlyVnn-~---lp~~~~~m~~lY~~~kd~DGfLyl~Ys~ 92 (102)
..+++..|+.++...+|+.++++++ -.|+.|-++ + +-..+.++.++ .-.+|..|.|-...
T Consensus 156 ~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~---~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 156 CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDA---GLYQGQVLVIEPQN 221 (231)
T ss_dssp EEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTT---TCCTTEEEEEEECC
T ss_pred EEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHh---CCCCCCEEEEEEec
Confidence 5679999999999999999999875 445554433 2 33456676653 22345566666553
No 131
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=32.18 E-value=82 Score=20.00 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=32.9
Q ss_pred ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcC
Q 034167 26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 63 (102)
Q Consensus 26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn 63 (102)
.-.++-|.++.|++.|...|.++-++++.+-.+||-+.
T Consensus 24 ~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~ 61 (94)
T 4efo_A 24 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 61 (94)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTE
T ss_pred eEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 45568899999999999999999999998778887774
No 132
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=31.67 E-value=58 Score=19.95 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=28.3
Q ss_pred eEEEecCCcchHhHHHHHHHHhc-CC---------CcceEEEEEcCcCCCCCc
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIK-LS---------AEKAIFIFVDNVLPPTGA 70 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~-l~---------~~~slFlyVnn~lp~~~~ 70 (102)
..+-+++..|+++++..|..+.. ++ ..+.+-++||+...+.+.
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~ 81 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE 81 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCC
Confidence 34557888999999999987631 11 124567889986444443
No 133
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=31.44 E-value=79 Score=20.90 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=47.2
Q ss_pred EE-ecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCC-------CCeEEEEecCCcccCC
Q 034167 30 YL-VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE-------DGFLYVTYSGENTFGS 98 (102)
Q Consensus 30 fl-Vp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~-------DGfLyl~Ys~~~afG~ 98 (102)
|+ |..+.||.++...|..+.++++++--.+| ++.+...+.++++. . . .. +--|++.+.....|..
T Consensus 15 ~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~-~Gk~LeD~kTL~dy-~-I-~~~ta~~q~~atl~Lvlr~~~~fE~ 87 (118)
T 4ajy_B 15 FTDAKESSTVFELKRIVEGILKRPPDEQRLYK-DDQLLDDGKTLGEC-G-F-TSQTARPQAPATVGLAFRADDTFEA 87 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTTTT-T-C-CGGGSBTTBCEEEEEEECCSSCCCC
T ss_pred EEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe-CCeECCCcCCHHHc-C-C-CcCcccCCCCCEEEEEEecCCCccc
Confidence 44 88999999999999999999876543333 55666667777652 1 1 12 5689999988777764
No 134
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=30.49 E-value=43 Score=23.80 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.1
Q ss_pred HHHHHHhcCCCcceEEEEEc
Q 034167 43 YVIRKRIKLSAEKAIFIFVD 62 (102)
Q Consensus 43 ~~lRk~L~l~~~~slFlyVn 62 (102)
.-+|++|++.+++.|.+++.
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 45899999999999999996
No 135
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=30.00 E-value=70 Score=18.51 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=25.7
Q ss_pred CCcchHhHHHHHHHHhcCCCc-ceEEEEEcCcC-CCCCchH
Q 034167 34 ADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNVL-PPTGAIM 72 (102)
Q Consensus 34 ~~~tv~~f~~~lRk~L~l~~~-~slFlyVnn~l-p~~~~~m 72 (102)
+..|+++++..|..+-.+..- +.+-+.||+.. +..+..+
T Consensus 19 ~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l 59 (74)
T 3rpf_C 19 KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPL 59 (74)
T ss_dssp ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCC
T ss_pred CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCC
Confidence 668999999988765333321 45778899865 6554433
No 136
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.65 E-value=29 Score=20.29 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=10.2
Q ss_pred ecCCcchHhHHHHHHHH
Q 034167 32 VPADLTVGQFVYVIRKR 48 (102)
Q Consensus 32 Vp~~~tv~~f~~~lRk~ 48 (102)
+|.+.|-.++..++.+.
T Consensus 16 Lp~~~t~~~l~~~F~~~ 32 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGDR 32 (93)
T ss_dssp CCTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHc
Confidence 56666666666655443
No 137
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=29.18 E-value=50 Score=19.64 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=28.0
Q ss_pred eEEEecCCcchHhHHHHHHHHhc------CCCc----ceEEEEEcCcCCCCCc
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIK------LSAE----KAIFIFVDNVLPPTGA 70 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~------l~~~----~slFlyVnn~lp~~~~ 70 (102)
..+-+|...|+++++..|..+.. ++.+ ..+-++||+.....+.
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~ 72 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGE 72 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTS
T ss_pred EEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCc
Confidence 34557788999999999987752 2211 2367889986433343
No 138
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=28.54 E-value=12 Score=25.62 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=0.0
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 91 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys 91 (102)
+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++.= -+ ++..|++.-.
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~dyg--I~-~gstL~Lvlr 72 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYN--IQ-KESTLHLVLR 72 (152)
T ss_dssp --------------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEEccccCcHHHcC--CC-CCCEEEEEee
Confidence 448899999999999999999887543333 3555555666777641 11 2335665543
No 139
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.52 E-value=23 Score=20.55 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=13.1
Q ss_pred chHHHHHhhccC---------CCCeEEEEecCCc
Q 034167 70 AIMSAIYEEKKD---------EDGFLYVTYSGEN 94 (102)
Q Consensus 70 ~~m~~lY~~~kd---------~DGfLyl~Ys~~~ 94 (102)
+.|.+++..|.. .-||-+|.|.+.+
T Consensus 20 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 20 DELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQ 53 (88)
T ss_dssp HHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHH
T ss_pred HHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHH
Confidence 345555555532 2356666665543
No 140
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=28.09 E-value=52 Score=20.63 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=36.5
Q ss_pred ecCCcchHhHHHHH-HHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC--CCCeEEEEec
Q 034167 32 VPADLTVGQFVYVI-RKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD--EDGFLYVTYS 91 (102)
Q Consensus 32 Vp~~~tv~~f~~~l-Rk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd--~DGfLyl~Ys 91 (102)
|+.+.|++++...| ..+-++++++-- |..++.....+.++++ |+- ++.+|++--+
T Consensus 38 v~~~~TV~~lK~~I~~~~~gip~~~Qr-Li~~Gk~L~D~~tL~d----y~I~~~g~ti~lmvs 95 (98)
T 4a20_A 38 FSPSDTILQIKQHLISEEKASHISEIK-LLLKGKVLHDNLFLSD----LKVTPANSTITVMIK 95 (98)
T ss_dssp ECTTCBHHHHHHHHHHTTSCSCGGGEE-EEETTEEECTTCBGGG----SCCBTTBCEEEEEEC
T ss_pred cCCCChHHHHHHHHHHHhcCCChhhEE-EEECCEECcCcCCHHH----cCcCCCCCEEEEEEe
Confidence 46999999999999 776677765433 3346665666777776 332 3557766543
No 141
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.97 E-value=52 Score=19.29 Aligned_cols=10 Identities=20% Similarity=0.737 Sum_probs=5.1
Q ss_pred CeEEEEecCC
Q 034167 84 GFLYVTYSGE 93 (102)
Q Consensus 84 GfLyl~Ys~~ 93 (102)
||-+|.|.+.
T Consensus 53 g~afV~f~~~ 62 (99)
T 2div_A 53 GYCFVEFADL 62 (99)
T ss_dssp EEEEEECSCH
T ss_pred CEEEEEeCCH
Confidence 4555555443
No 142
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=27.70 E-value=63 Score=23.88 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=35.8
Q ss_pred ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEecCC
Q 034167 26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 93 (102)
Q Consensus 26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys~~ 93 (102)
+..-|.=..+++..+|...+++. ++ |+.| .|++. .+.++|++..+ .|..++++.|+.
T Consensus 35 ~~~~y~D~~di~~~efy~~~~~~-~~-p~TS--------qps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 92 (289)
T 1pzx_A 35 NGQDYKDGITIEPKQVYDAMRQG-HT-VKTA--------QPSPL-AMKELFLPYAKENRPCLYIAFSSK 92 (289)
T ss_dssp TTEEEEBTTTBCHHHHHHHHTTT-CC-CEEE--------CCCHH-HHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhC-CC-CeeC--------CCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 33445444578888998888753 22 2322 45544 47778877743 367999998764
No 143
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=26.93 E-value=81 Score=23.18 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=31.7
Q ss_pred ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167 26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 93 (102)
Q Consensus 26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 93 (102)
+.+-|.=..+++..+|...+++.=.++ +. +.|++ ++..+.|++-|..++++.|+.
T Consensus 32 ~~~~y~D~~di~~~efy~~~~~~~~~p-~T--------Sqps~----~~~~~~f~~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 32 DNEEFCDDGQLDIHRMLDILEKHKGRS-YT--------ACPGI----DAWLEAFGDDDEIFVVTITAG 86 (278)
T ss_dssp SSCEEECSTTCCHHHHHHHHHTCCSCC-EE--------ECCCH----HHHHHHHTTCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCCc-ee--------cCCCH----HHHHHHHhcCCcEEEEECCCc
Confidence 334454445788889998887531121 21 13443 344444445577999998864
No 144
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.97 E-value=1.1e+02 Score=18.35 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=27.1
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCC-cceEEEE
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSA-EKAIFIF 60 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~-~~slFly 60 (102)
...-|+.+.|++++...|..+-++++ .+.|++.
T Consensus 21 ~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 21 SEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred EEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 44569999999999999999999986 4566554
No 145
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.16 E-value=49 Score=19.83 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=37.1
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCC-chHHHHHhhccC-CCCeEEEEecC
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSAIYEEKKD-EDGFLYVTYSG 92 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~-~~m~~lY~~~kd-~DGfLyl~Ys~ 92 (102)
.+-|+.+.||+++...|..+. ...+.|+ .++.....+ .++++. +- ++..|++....
T Consensus 21 ~~~v~~~~TV~~LK~~i~~~~--~~~qrLi--~~Gk~L~D~~~tL~~y----~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 21 LAVARPEDTVGTLKSKYFPGQ--ESQMKLI--YQGRLLQDPARTLSSL----NITNNCVIHCHRSP 78 (95)
T ss_dssp EEEECSSSBHHHHHHHHSSST--TTTCEEE--ETTEECCCSSCBTTTT----TCCTTEEEEEECCC
T ss_pred EEEECCCCcHHHHHHHHHhhC--cCcEEEE--ECCEEccCCcCCHHHc----CCCCCCEEEEEECC
Confidence 456899999999999888776 5555654 356555555 777663 22 34477776643
No 146
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.42 E-value=70 Score=18.77 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=11.9
Q ss_pred ceeEEE--ecCCcchHhHHHHHHHH
Q 034167 26 ENYRYL--VPADLTVGQFVYVIRKR 48 (102)
Q Consensus 26 ~k~Kfl--Vp~~~tv~~f~~~lRk~ 48 (102)
.++-|. +|.+.|-.++..++.+.
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~ 43 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALREL 43 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHT
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhc
Confidence 334444 55566666655555443
No 147
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=24.41 E-value=38 Score=19.68 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=23.1
Q ss_pred cCCcchHhHHHHHHHHhc-----CCCcceEEEEEcCcCCCCC
Q 034167 33 PADLTVGQFVYVIRKRIK-----LSAEKAIFIFVDNVLPPTG 69 (102)
Q Consensus 33 p~~~tv~~f~~~lRk~L~-----l~~~~slFlyVnn~lp~~~ 69 (102)
+...|+++++..|..+.. ++. ..+.+.||+...+.+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~-~~~~v~vN~~~v~~~ 63 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALED-GKLLAAVNQTLVSFD 63 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCC-TTCEEEETTEECCTT
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcC-CCEEEEECCEECCCC
Confidence 467799999988875521 332 345788998643333
No 148
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=23.96 E-value=1.9e+02 Score=20.20 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=32.7
Q ss_pred eeEEEEEeecCCC-CCCCcceeEEEecCCcchHhHHHHHHHHh
Q 034167 8 TRYLILSYTNKVS-SLPECENYRYLVPADLTVGQFVYVIRKRI 49 (102)
Q Consensus 8 ~~vIi~~~~~~~~-~~P~L~k~KflVp~~~tv~~f~~~lRk~L 49 (102)
+-+-|-||.+... ..|.++...+-++++.|+-+....++..+
T Consensus 5 ~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~tlL~~l~~~~~~~ 47 (241)
T 2bs2_B 5 LTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMIRETY 47 (241)
T ss_dssp EEEEEEECCTTCTTCCCEEEEEEEECCTTCBHHHHHHHHHHHT
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEeCCCCChHHHHHHHhchhc
Confidence 4566778877443 78999998888999999999888877653
No 149
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=23.56 E-value=1.2e+02 Score=22.68 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=31.8
Q ss_pred CCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEE
Q 034167 22 LPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 61 (102)
Q Consensus 22 ~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyV 61 (102)
+|+=....+.|.+..|+.+++..|.++|+|.+.+-.=|+.
T Consensus 92 l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 92 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred CcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 4444566788999999999999999999999766554544
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=23.48 E-value=99 Score=19.66 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=23.8
Q ss_pred EEEEcCcCC-CCCchHHHHHhhccC---------CCCeEEEEecCCc
Q 034167 58 FIFVDNVLP-PTGAIMSAIYEEKKD---------EDGFLYVTYSGEN 94 (102)
Q Consensus 58 FlyVnn~lp-~~~~~m~~lY~~~kd---------~DGfLyl~Ys~~~ 94 (102)
-|||+|--+ -.++.|.+++..|++ .-||-+|.|.+.+
T Consensus 75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPR 121 (150)
T ss_dssp EEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHH
Confidence 355666322 345578888888854 2578888887654
No 151
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=23.04 E-value=1.2e+02 Score=19.76 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=20.0
Q ss_pred ceeEEEec-CCcchHhHHHHHHHHhc
Q 034167 26 ENYRYLVP-ADLTVGQFVYVIRKRIK 50 (102)
Q Consensus 26 ~k~KflVp-~~~tv~~f~~~lRk~L~ 50 (102)
+..||+.+ .+.|...+..++.+-+.
T Consensus 102 ~~~Ky~~~~~~~t~~~i~~Fv~d~l~ 127 (147)
T 3bj5_A 102 EMTKYKPESEELTAERITEFCHRFLE 127 (147)
T ss_dssp SCEEECCSCCCCCHHHHHHHHHHHHT
T ss_pred ccccCCCCcccCCHHHHHHHHHHHHc
Confidence 35678866 88999999999998874
No 152
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.86 E-value=98 Score=18.62 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=7.2
Q ss_pred CCeEEEEecCCc
Q 034167 83 DGFLYVTYSGEN 94 (102)
Q Consensus 83 DGfLyl~Ys~~~ 94 (102)
-||-+|.|.+.+
T Consensus 67 ~g~afV~f~~~~ 78 (114)
T 2cq4_A 67 KGIAYVEFCEIQ 78 (114)
T ss_dssp CCCEEEEESCGG
T ss_pred CcEEEEEeCcHH
Confidence 356667766544
No 153
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=22.82 E-value=1.5e+02 Score=21.24 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=27.5
Q ss_pred eEEEecCCcchHhHHHHHHHHhcCCCcceEEEE
Q 034167 28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIF 60 (102)
Q Consensus 28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFly 60 (102)
.++.|.+..|+.++...|.++|+|.+.+-.=|+
T Consensus 13 ~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~ 45 (294)
T 1ef1_A 13 LEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQ 45 (294)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCCcceeEEE
Confidence 458899999999999999999999987643333
No 154
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=21.72 E-value=64 Score=25.39 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=18.1
Q ss_pred CcchHhHHHHHHHHhcCCCcceEEEEE
Q 034167 35 DLTVGQFVYVIRKRIKLSAEKAIFIFV 61 (102)
Q Consensus 35 ~~tv~~f~~~lRk~L~l~~~~slFlyV 61 (102)
+.++.+ |||||+++.+...|||.
T Consensus 371 ~~~p~~----LRkklkl~~~~~~~l~~ 393 (410)
T 3ll7_A 371 PLSPIE----LRQRSKMADGGEKTLMG 393 (410)
T ss_dssp SSCHHH----HHHHHTCCCCSSEEEEE
T ss_pred CCCHHH----HHHhcCCCCCCcEEEEE
Confidence 445554 99999999888888877
No 155
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=21.70 E-value=1.2e+02 Score=18.13 Aligned_cols=9 Identities=44% Similarity=1.088 Sum_probs=4.3
Q ss_pred CeEEEEecC
Q 034167 84 GFLYVTYSG 92 (102)
Q Consensus 84 GfLyl~Ys~ 92 (102)
||-+|.|.+
T Consensus 63 g~afV~f~~ 71 (110)
T 1wf1_A 63 GYAFVQYSN 71 (110)
T ss_dssp TEEEEECSS
T ss_pred CEEEEEECC
Confidence 444454443
No 156
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.40 E-value=1.8e+02 Score=19.18 Aligned_cols=46 Identities=2% Similarity=-0.047 Sum_probs=34.8
Q ss_pred EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167 29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 75 (102)
Q Consensus 29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l 75 (102)
-.-++.+.|+++|...+-++.+.+++.--.+| ++.....++++.+.
T Consensus 30 tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy-~GKiLKD~eTL~~~ 75 (118)
T 2daf_A 30 VIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY-SGKILKNNETLVQH 75 (118)
T ss_dssp EEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE-TTEEECSSCCHHHH
T ss_pred EEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE-CCeEcCCcchHHHc
Confidence 34489999999999999999998877544444 55555778888753
No 157
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=21.29 E-value=1.4e+02 Score=18.59 Aligned_cols=37 Identities=11% Similarity=0.345 Sum_probs=25.8
Q ss_pred EEEEEcCcCC-CCCchHHHHHhhccC--------CCCeEEEEecCC
Q 034167 57 IFIFVDNVLP-PTGAIMSAIYEEKKD--------EDGFLYVTYSGE 93 (102)
Q Consensus 57 lFlyVnn~lp-~~~~~m~~lY~~~kd--------~DGfLyl~Ys~~ 93 (102)
--|||.|--+ ...+.+.+|+.+|+. .-||=.+.|+++
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~ 53 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTR 53 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSH
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCH
Confidence 3567888555 455689999999965 356777777655
No 158
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=21.03 E-value=1.5e+02 Score=19.00 Aligned_cols=35 Identities=14% Similarity=0.395 Sum_probs=23.9
Q ss_pred EEecC---CcchHhHHHHHHHHh-cCC---------CcceEEEEEcCc
Q 034167 30 YLVPA---DLTVGQFVYVIRKRI-KLS---------AEKAIFIFVDNV 64 (102)
Q Consensus 30 flVp~---~~tv~~f~~~lRk~L-~l~---------~~~slFlyVnn~ 64 (102)
.-+|. ..|+++++..|+++. +++ -..-+.+|||+.
T Consensus 34 vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~ 81 (114)
T 1wgk_A 34 VALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDA 81 (114)
T ss_dssp EEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSS
T ss_pred EEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCe
Confidence 56783 369999999999775 211 112377899974
No 159
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=20.99 E-value=78 Score=18.57 Aligned_cols=17 Identities=6% Similarity=0.012 Sum_probs=11.0
Q ss_pred ecCCcchHhHHHHHHHH
Q 034167 32 VPADLTVGQFVYVIRKR 48 (102)
Q Consensus 32 Vp~~~tv~~f~~~lRk~ 48 (102)
+|.+.|-.++..+..+.
T Consensus 8 Lp~~~t~~~l~~~F~~~ 24 (101)
T 2hvz_A 8 LGTGAGKGELERAFSYY 24 (101)
T ss_dssp CCSSCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhc
Confidence 56677777766666554
No 160
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=20.66 E-value=1e+02 Score=16.78 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=8.6
Q ss_pred CCeEEEEecCCc
Q 034167 83 DGFLYVTYSGEN 94 (102)
Q Consensus 83 DGfLyl~Ys~~~ 94 (102)
-|+-++.|.+.+
T Consensus 41 ~g~afV~f~~~~ 52 (75)
T 1iqt_A 41 RGFCFITFKEEE 52 (75)
T ss_dssp CCCEEEECSSSH
T ss_pred CCEEEEEECCHH
Confidence 467888887764
No 161
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=20.31 E-value=67 Score=20.10 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCCcceEEEEEcC
Q 034167 42 VYVIRKRIKLSAEKAIFIFVDN 63 (102)
Q Consensus 42 ~~~lRk~L~l~~~~slFlyVnn 63 (102)
-.-+|++|++.+++.+-+.+.+
T Consensus 65 PkeiR~~lgi~~Gd~l~~~~~~ 86 (92)
T 2glw_A 65 PKALRDVIGIKPGEVIEVLLLG 86 (92)
T ss_dssp CHHHHHHHTCCTTCEEEEEEEE
T ss_pred cHHHHHHcCCCCCCEEEEEEeC
Confidence 3678999999999998877754
No 162
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=20.18 E-value=96 Score=18.19 Aligned_cols=11 Identities=18% Similarity=0.649 Sum_probs=6.8
Q ss_pred CeEEEEecCCc
Q 034167 84 GFLYVTYSGEN 94 (102)
Q Consensus 84 GfLyl~Ys~~~ 94 (102)
||-++.|.+.+
T Consensus 51 g~afV~f~~~~ 61 (102)
T 2xs2_A 51 GYGFVSFYNDV 61 (102)
T ss_dssp EEEEEEESSCC
T ss_pred ceEEEEECCHH
Confidence 56667766544
No 163
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.17 E-value=1.1e+02 Score=18.49 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=6.6
Q ss_pred CCeEEEEecCCc
Q 034167 83 DGFLYVTYSGEN 94 (102)
Q Consensus 83 DGfLyl~Ys~~~ 94 (102)
-||-+|.|.+.+
T Consensus 69 kg~afV~f~~~~ 80 (109)
T 2err_A 69 KGFGFVTFENSA 80 (109)
T ss_dssp TTEEEEECCCSH
T ss_pred ceEEEEEECCHH
Confidence 356666665543
No 164
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.07 E-value=83 Score=19.21 Aligned_cols=58 Identities=10% Similarity=-0.018 Sum_probs=37.5
Q ss_pred EEecCCcchHhHHHHHHHHhcCCCc-ceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167 30 YLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 93 (102)
Q Consensus 30 flVp~~~tv~~f~~~lRk~L~l~~~-~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 93 (102)
+-|+.+.|+++|...|..+-+++++ +.|+ .++.....+ +++++ .-+ ++..|+|--+.+
T Consensus 22 l~v~~~~TV~~lK~~I~~~tgip~~~QkLi--~~Gk~L~D~-tL~~~--~I~-~g~~i~l~~~~~ 80 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFALTGVQPARQKVM--VKGGTLKDD-DWGNI--KMK-NGMTVLMMGSAD 80 (96)
T ss_dssp EEEESSSCHHHHHHHHHHHTCCCTTTSCCE--ETTEECCSS-CCCSC--CCC-SSCEEECCCCCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCcCCCCC-CHHHC--CCC-CCCEEEEEecch
Confidence 4589999999999999999999864 4443 355544444 55442 112 344677655444
Done!