Query 034169
Match_columns 102
No_of_seqs 106 out of 222
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 10:32:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3487 TRAPP 20 K subunit [In 100.0 5.4E-34 1.2E-38 204.0 7.4 85 4-88 2-90 (139)
2 PF04628 Sedlin_N: Sedlin, N-t 100.0 1.9E-29 4.1E-34 177.9 8.2 89 9-97 1-97 (132)
3 COG5603 TRS20 Subunit of TRAPP 99.9 5.8E-28 1.3E-32 171.6 7.8 93 4-96 2-98 (136)
4 KOG3444 Uncharacterized conser 99.9 4.5E-26 9.9E-31 159.7 8.5 86 4-93 2-97 (121)
5 PF04099 Sybindin: Sybindin-li 96.3 0.089 1.9E-06 37.6 10.0 83 5-88 2-96 (142)
6 KOG3369 Transport protein part 92.4 0.97 2.1E-05 34.7 7.6 35 64-98 128-162 (199)
7 KOG3368 Transport protein part 88.8 5.6 0.00012 29.2 8.5 82 3-86 2-88 (140)
8 COG5122 TRS23 Transport protei 76.3 9.4 0.0002 27.5 5.4 76 5-84 4-84 (134)
9 PF15205 PLAC9: Placenta-speci 63.9 5.8 0.00013 26.1 1.9 22 32-53 16-37 (74)
10 PF02464 CinA: Competence-dama 46.4 74 0.0016 22.8 5.5 43 2-49 111-153 (154)
11 PF15017 AF1Q: Drug resistance 45.7 5.7 0.00012 26.9 -0.4 11 70-80 73-83 (87)
12 PRK03673 hypothetical protein; 45.6 62 0.0013 27.0 5.6 46 3-50 333-378 (396)
13 KOG4497 Uncharacterized conser 44.1 16 0.00034 31.0 1.9 55 35-89 168-225 (447)
14 PRK13938 phosphoheptose isomer 32.5 1.6E+02 0.0034 22.0 5.5 50 3-52 140-193 (196)
15 PF12321 DUF3634: Protein of u 27.8 2.2E+02 0.0047 19.9 5.2 66 7-86 15-80 (108)
16 PRK15372 pathogenicity island 25.4 39 0.00084 27.4 1.2 54 6-67 186-244 (292)
17 TIGR00199 cinA_cterm competenc 25.2 2.4E+02 0.0052 20.2 5.2 40 3-46 106-145 (146)
18 PRK00549 competence damage-ind 24.7 2.5E+02 0.0054 23.3 5.9 43 3-50 368-411 (414)
19 TIGR00441 gmhA phosphoheptose 24.4 2.5E+02 0.0055 19.5 5.2 45 3-47 106-154 (154)
20 PF12100 DUF3576: Domain of un 24.0 1E+02 0.0022 21.5 2.9 36 35-77 5-41 (103)
21 PRK10886 DnaA initiator-associ 23.6 1.8E+02 0.0038 21.8 4.4 49 3-51 136-191 (196)
22 PF03558 TBSV_P22: TBSV core p 21.4 66 0.0014 24.5 1.7 16 71-86 54-69 (189)
23 cd05006 SIS_GmhA Phosphoheptos 21.1 2.6E+02 0.0056 19.7 4.7 45 3-47 128-176 (177)
24 PF04001 Vhr1: Transcription f 20.4 18 0.00038 24.9 -1.4 26 40-65 13-39 (95)
25 PRK00414 gmhA phosphoheptose i 20.3 3.5E+02 0.0077 19.7 5.9 48 3-50 138-190 (192)
26 PF01119 DNA_mis_repair: DNA m 20.2 2.2E+02 0.0047 19.0 4.0 34 63-96 19-58 (119)
27 PF07667 DUF1600: Protein of u 20.0 69 0.0015 22.6 1.5 25 54-78 55-79 (114)
No 1
>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-34 Score=204.04 Aligned_cols=85 Identities=48% Similarity=0.797 Sum_probs=77.2
Q ss_pred eEEEEEEcCCCCeeEEEEccC----CCcchhHHHHHHHHHHhhhhhHHHhhhccCccccccccccCCeEEEEEEeCCceE
Q 034169 4 TACFIIVSRNEIPIYEAEVGS----AVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDL 79 (102)
Q Consensus 4 ~~~~aIVG~~d~PLYe~~~~s----~~~~~~~~~~~qfi~HaSLDiVeE~~w~t~~~YLk~ld~f~~~~VsayvT~~~iK 79 (102)
+.||||||+.|+|+||.|++. ..++++.++++|||+|||||+|||.+|++++||||.||+|++|.||||||+|+||
T Consensus 2 ~~yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~snmYLktVDkfne~~VSAyvTas~i~ 81 (139)
T KOG3487|consen 2 TAYFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSNMYLKTVDKFNELFVSAYVTASHIR 81 (139)
T ss_pred ceEEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcceeEEEEEccCcEE
Confidence 349999999999999999993 3347889999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCcee
Q 034169 80 CYFTTLGMM 88 (102)
Q Consensus 80 fil~~~~~~ 88 (102)
|+++-.++-
T Consensus 82 f~mlh~~~~ 90 (139)
T KOG3487|consen 82 FIMLHINRA 90 (139)
T ss_pred EEEEeeccc
Confidence 998644443
No 2
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=99.96 E-value=1.9e-29 Score=177.92 Aligned_cols=89 Identities=30% Similarity=0.472 Sum_probs=69.4
Q ss_pred EEcCCCCeeEEEEccCCCcch--hHHHHHHHHHHhhhhhHHHhhhc-cCccccccccccCCeEEEEEEeCCceEEEEeeC
Q 034169 9 IVSRNEIPIYEAEVGSAVKRE--DAAQLHQFILHAALDIVQDLAWT-TSAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTL 85 (102)
Q Consensus 9 IVG~~d~PLYe~~~~s~~~~~--~~~~~~qfi~HaSLDiVeE~~w~-t~~~YLk~ld~f~~~~VsayvT~~~iKfil~~~ 85 (102)
|||++|+|||++++++++... ...++.||++|+|||+|||++|. ++++|||.||++++|+||||+|+|++|||++..
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~ 80 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD 80 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence 899999999999999876432 24677999999999999999999 999999999999999999999999999999876
Q ss_pred ---ceeecc--hhhhhh
Q 034169 86 ---GMMMGS--RAFSKR 97 (102)
Q Consensus 86 ---~~~~~~--~~~~~~ 97 (102)
+..+|+ +.||++
T Consensus 81 ~~~~~~~d~~ik~fF~~ 97 (132)
T PF04628_consen 81 MSDNSIRDEDIKQFFKE 97 (132)
T ss_dssp GGG-S--HHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHH
Confidence 444443 466665
No 3
>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
Probab=99.95 E-value=5.8e-28 Score=171.62 Aligned_cols=93 Identities=29% Similarity=0.512 Sum_probs=83.2
Q ss_pred eEEEEEEcCCCCeeEEEEccC---CCcchhHHHHHHHHHHhhhhhHHHhhhccCccccccccccCCeEEEEEEeCCceEE
Q 034169 4 TACFIIVSRNEIPIYEAEVGS---AVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLC 80 (102)
Q Consensus 4 ~~~~aIVG~~d~PLYe~~~~s---~~~~~~~~~~~qfi~HaSLDiVeE~~w~t~~~YLk~ld~f~~~~VsayvT~~~iKf 80 (102)
..|+||||++|+|+||+++++ .++++..++++|||+|||||+|+.++|+.|..|+++||.|.+..|+||++|++.||
T Consensus 2 ~~y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~Y~~~~d~f~~l~IsAYi~pSgmkf 81 (136)
T COG5603 2 GEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLDSFGDLRISAYIMPSGMKF 81 (136)
T ss_pred CceEEEEecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhHHHHHHHhhCCeEEEEEEccCCceE
Confidence 359999999999999999994 34567889999999999999999999999999999999999999999999999999
Q ss_pred EEeeCceeecc-hhhhh
Q 034169 81 YFTTLGMMMGS-RAFSK 96 (102)
Q Consensus 81 il~~~~~~~~~-~~~~~ 96 (102)
+++-.++-++| |+|+.
T Consensus 82 ~~iH~n~s~~N~rsF~q 98 (136)
T COG5603 82 LFIHQNQSRKNARSFLQ 98 (136)
T ss_pred EEEeccchhhhHHHHHH
Confidence 99877766665 56653
No 4
>KOG3444 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=4.5e-26 Score=159.71 Aligned_cols=86 Identities=14% Similarity=0.260 Sum_probs=77.2
Q ss_pred eEEEEEEcCCCCeeEEEEccCCCcchhHHHHHHHHHHhhhhhHHHhhhc-------cCccccccccccCCeEEEEEEeCC
Q 034169 4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWT-------TSAMFLKAIDRFNDLVVSVYVTAG 76 (102)
Q Consensus 4 ~~~~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiVeE~~w~-------t~~~YLk~ld~f~~~~VsayvT~~ 76 (102)
.+|++++|++|+|||.+.+.. .|.+...||.+|+|||+|||+... ++++|||++++.++|+||||+|||
T Consensus 2 ~v~~av~g~kn~~lyi~s~t~----~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtNT 77 (121)
T KOG3444|consen 2 LVCLAVAGPKNEPLYIESITP----KEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTNT 77 (121)
T ss_pred EEEEEEEcCCCCccEEEecCc----HHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEecc
Confidence 579999999999999999864 366677899999999999999853 479999999999999999999999
Q ss_pred ceEEEEe---eCceeecchh
Q 034169 77 HDLCYFT---TLGMMMGSRA 93 (102)
Q Consensus 77 ~iKfil~---~~~~~~~~~~ 93 (102)
++|||++ ++.++||+|-
T Consensus 78 kVKFIlvvdssd~avretei 97 (121)
T KOG3444|consen 78 KVKFILVVDSSDYAVRETEI 97 (121)
T ss_pred EEEEEEEEcCCcceehhHHH
Confidence 9999986 6899999973
No 5
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=96.30 E-value=0.089 Score=37.60 Aligned_cols=83 Identities=11% Similarity=-0.043 Sum_probs=47.7
Q ss_pred EEEEEEcCCCCeeEEEEccCCC-----cchhHHHHHHHHHHhhhhhHHHhhhcc-------CccccccccccCCeEEEEE
Q 034169 5 ACFIIVSRNEIPIYEAEVGSAV-----KREDAAQLHQFILHAALDIVQDLAWTT-------SAMFLKAIDRFNDLVVSVY 72 (102)
Q Consensus 5 ~~~aIVG~~d~PLYe~~~~s~~-----~~~~~~~~~qfi~HaSLDiVeE~~w~t-------~~~YLk~ld~f~~~~Vsay 72 (102)
+.|-|+++...-+|-+++.... +..+.+.+.=+=.--||-.+=.++... +.-.++. ...+.|++..|
T Consensus 2 yslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~-~~T~~yklh~~ 80 (142)
T PF04099_consen 2 YSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFES-FETDTYKLHCF 80 (142)
T ss_dssp EEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEE-EEESS-EEEEE
T ss_pred eEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEE-EEeCCEEEEEE
Confidence 5688999999999999998643 222222222233333455555554431 1122322 34778999999
Q ss_pred EeCCceEEEEeeCcee
Q 034169 73 VTAGHDLCYFTTLGMM 88 (102)
Q Consensus 73 vT~~~iKfil~~~~~~ 88 (102)
-|+|++|||++++...
T Consensus 81 eT~TGlKFvl~td~~~ 96 (142)
T PF04099_consen 81 ETPTGLKFVLITDPNV 96 (142)
T ss_dssp E-TTS-EEEEEE-TTC
T ss_pred EcCcCcEEEEEecCCC
Confidence 9999999999988776
No 6
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.38 E-value=0.97 Score=34.66 Aligned_cols=35 Identities=6% Similarity=0.076 Sum_probs=31.9
Q ss_pred cCCeEEEEEEeCCceEEEEeeCceeecchhhhhhh
Q 034169 64 FNDLVVSVYVTAGHDLCYFTTLGMMMGSRAFSKRS 98 (102)
Q Consensus 64 f~~~~VsayvT~~~iKfil~~~~~~~~~~~~~~~~ 98 (102)
+..+....|.|-|++||+++++.+.-..|++.|+-
T Consensus 128 tdtF~l~~~QTlTG~KFVvis~~~~~~aD~lLrKi 162 (199)
T KOG3369|consen 128 TDTFTLHIFQTLTGTKFVVIAEPGTQGADSLLRKI 162 (199)
T ss_pred eccEEEEEEEccCCcEEEEEecCCchhHHHHHHHH
Confidence 56788999999999999999999999999999874
No 7
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=5.6 Score=29.15 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=55.8
Q ss_pred ceEEEEEEcCCCCeeEEEEccCCCc---chhHHHHHHHHHHhhhhhHHHhhhcc--CccccccccccCCeEEEEEEeCCc
Q 034169 3 TTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTT--SAMFLKAIDRFNDLVVSVYVTAGH 77 (102)
Q Consensus 3 ~~~~~aIVG~~d~PLYe~~~~s~~~---~~~~~~~~qfi~HaSLDiVeE~~w~t--~~~YLk~ld~f~~~~VsayvT~~~ 77 (102)
+-+-|-|-.++.+-||-.|-..++. .++.++-.=|=.-.||--+=.|+... ++-++ -++.+.|++.=|-||++
T Consensus 2 tiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~--sy~Ts~YklhfyeTptg 79 (140)
T KOG3368|consen 2 TIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFL--SYKTSKYKLHFYETPTG 79 (140)
T ss_pred eEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCee--EEeeceeEEEEEEcCCC
Confidence 3455778888888999887764321 22333334476777887777776543 23222 35678899999999999
Q ss_pred eEEEEeeCc
Q 034169 78 DLCYFTTLG 86 (102)
Q Consensus 78 iKfil~~~~ 86 (102)
+||++.++.
T Consensus 80 lk~vl~Tdp 88 (140)
T KOG3368|consen 80 LKFVLNTDP 88 (140)
T ss_pred cEEEEecCC
Confidence 999998764
No 8
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=76.33 E-value=9.4 Score=27.55 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=46.1
Q ss_pred EEEEEEcCCCCeeEEEEccCCCcchhHHHHHHH-HHHhhhhhHHHhhhccCccccccccc----cCCeEEEEEEeCCceE
Q 034169 5 ACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQF-ILHAALDIVQDLAWTTSAMFLKAIDR----FNDLVVSVYVTAGHDL 79 (102)
Q Consensus 5 ~~~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qf-i~HaSLDiVeE~~w~t~~~YLk~ld~----f~~~~VsayvT~~~iK 79 (102)
--|.||++...-+|.++|++.+. ....+.| |+-++|--|-.-.-++ -.|-|..-. |..+.+.-|.|-++.|
T Consensus 4 e~~~iINksGglifqref~~~et---~lnsneyLiLastlhgV~aI~tq~-~p~~gssg~~~l~~~~f~m~I~qT~TG~k 79 (134)
T COG5122 4 EQFFIINKSGGLIFQREFGEGET---ELNSNEYLILASTLHGVSAILTQT-IPLPGSSGRLVLYFRNFVMTIFQTTTGTK 79 (134)
T ss_pred eEEEEEecCCcEEEEEeccCCcc---ccCcccEEEEeechhhhhhhhhhc-ccCCCCCceEEEEeccEEEEEEEecCCcE
Confidence 35788999999999999986432 1111222 3333333333222222 113333322 7778899999999999
Q ss_pred EEEee
Q 034169 80 CYFTT 84 (102)
Q Consensus 80 fil~~ 84 (102)
|++++
T Consensus 80 FV~~~ 84 (134)
T COG5122 80 FVFVA 84 (134)
T ss_pred EEEEe
Confidence 99986
No 9
>PF15205 PLAC9: Placenta-specific protein 9
Probab=63.86 E-value=5.8 Score=26.07 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhhhHHHhhhcc
Q 034169 32 AQLHQFILHAALDIVQDLAWTT 53 (102)
Q Consensus 32 ~~~~qfi~HaSLDiVeE~~w~t 53 (102)
....|..+|+=||+|||++-+|
T Consensus 16 ~Cdrhmav~~RLdviEe~veKT 37 (74)
T PF15205_consen 16 GCDRHMAVHSRLDVIEETVEKT 37 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999998765
No 10
>PF02464 CinA: Competence-damaged protein; InterPro: IPR008136 CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation []. This is a C-terminal region of putative competence-damaged proteins from the cin operon.; PDB: 2A9S_A.
Probab=46.42 E-value=74 Score=22.81 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=27.9
Q ss_pred CceEEEEEEcCCCCeeEEEEccCCCcchhHHHHHHHHHHhhhhhHHHh
Q 034169 2 ATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDL 49 (102)
Q Consensus 2 ~~~~~~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiVeE~ 49 (102)
.|.+|++|.+++..-.++..|+. +.....+..+..+||.+-+.
T Consensus 111 ~G~v~iai~~~~~~~~~~~~~~g-----~R~~ir~~~~~~al~~L~~~ 153 (154)
T PF02464_consen 111 VGTVYIAIAYRGGVWVREVQFPG-----DREEIRQRAVNQALDLLRRY 153 (154)
T ss_dssp TTEEEEEEEETTSEEEEEEE--S------HHHHHHHHHHHHHHHHH--
T ss_pred CceEEEEEEeCCceEEEEEECCC-----CHHHHHHHHHHHHHHHHHhh
Confidence 46889999999885555555532 44455668888899888654
No 11
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=45.67 E-value=5.7 Score=26.87 Aligned_cols=11 Identities=9% Similarity=0.015 Sum_probs=9.0
Q ss_pred EEEEeCCceEE
Q 034169 70 SVYVTAGHDLC 80 (102)
Q Consensus 70 sayvT~~~iKf 80 (102)
-|++||+|||=
T Consensus 73 gGWITPsNIkq 83 (87)
T PF15017_consen 73 GGWITPSNIKQ 83 (87)
T ss_pred Cccccchhhhh
Confidence 48999999974
No 12
>PRK03673 hypothetical protein; Provisional
Probab=45.65 E-value=62 Score=27.02 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=34.5
Q ss_pred ceEEEEEEcCCCCeeEEEEccCCCcchhHHHHHHHHHHhhhhhHHHhh
Q 034169 3 TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA 50 (102)
Q Consensus 3 ~~~~~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiVeE~~ 50 (102)
|.+|+++.++++.-.....|. .++++.+...++.+..|||.+=..+
T Consensus 333 GtV~ial~~~~~~~~~~~~~~--g~R~~ir~~~~~aa~~AL~~lrr~L 378 (396)
T PRK03673 333 EHLNFALHTPDGTFAQRVRFS--ATRYSLAIRQEVCAMMALNMLRRWL 378 (396)
T ss_pred CEEEEEEEcCCCEEEEEEEcC--CChHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999988666666663 3466667667999999999986544
No 13
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=44.09 E-value=16 Score=30.98 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHHHHHhhhhhHHH--hhhccCccccccccccCCeEEEEEEeCCceEEEEe-eCceee
Q 034169 35 HQFILHAALDIVQD--LAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLCYFT-TLGMMM 89 (102)
Q Consensus 35 ~qfi~HaSLDiVeE--~~w~t~~~YLk~ld~f~~~~VsayvT~~~iKfil~-~~~~~~ 89 (102)
.|..-|..+|-+|= .-|+.+...|-..|.--||+||||=-..++|++-= +.+++.
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFL 225 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceE
Confidence 45667888888874 46888899999999999999999999999999953 334444
No 14
>PRK13938 phosphoheptose isomerase; Provisional
Probab=32.45 E-value=1.6e+02 Score=22.00 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=33.1
Q ss_pred ceEEEEEEcCCCCeeEEE---EccCC-CcchhHHHHHHHHHHhhhhhHHHhhhc
Q 034169 3 TTACFIIVSRNEIPIYEA---EVGSA-VKREDAAQLHQFILHAALDIVQDLAWT 52 (102)
Q Consensus 3 ~~~~~aIVG~~d~PLYe~---~~~s~-~~~~~~~~~~qfi~HaSLDiVeE~~w~ 52 (102)
+.-.++|.|..++||-+. .+..+ ....-.+..+.++.|+-.|+||+....
T Consensus 140 G~~vI~iT~~~~s~La~~aD~~l~v~~~e~~~v~e~h~~~~h~l~~~v~~~l~~ 193 (196)
T PRK13938 140 GVTVVAMTGESGGQLAEFADFLINVPSRDTGRIQESHIVFIHAISEHVEHALFA 193 (196)
T ss_pred CCEEEEEeCCCCChhhhhCCEEEEeCCCchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 345788999999998752 12111 112233445679999999999998753
No 15
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=27.82 E-value=2.2e+02 Score=19.94 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=43.3
Q ss_pred EEEEcCCCCeeEEEEccCCCcchhHHHHHHHHHHhhhhhHHHhhhccCccccccccccCCeEEEEEEeCCceEEEEeeCc
Q 034169 7 FIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTLG 86 (102)
Q Consensus 7 ~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiVeE~~w~t~~~YLk~ld~f~~~~VsayvT~~~iKfil~~~~ 86 (102)
++.++++-.|+|+..|....-.....+.-|=..|.+-||.+. +++ .-.|.+|.+.+++|+...-+.
T Consensus 15 Lv~~~r~~~~vf~i~f~dG~l~~~KG~iP~~F~~~c~dIa~~-------------~~~-~G~ik~~r~~~g~rL~fS~~i 80 (108)
T PF12321_consen 15 LVFVDRRGLPVFEIHFKDGRLRVHKGHIPPGFLHNCRDIARR-------------YPF-RGTIKVYRQRGGVRLHFSRSI 80 (108)
T ss_pred HHHccccCceEEEEEEECCcEEEEcCCCChHHHHHHHHHHHh-------------CCC-cEEEEEEEeCCceEEEEeCCC
Confidence 345677788999999975432212222233345666666653 456 778999999999998875443
No 16
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=25.42 E-value=39 Score=27.40 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=36.1
Q ss_pred EEEEEcCCCCeeEEEEccCCCcchhHHHHHHHHHHhhh---hhHHHhhhcc--CccccccccccCCe
Q 034169 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAAL---DIVQDLAWTT--SAMFLKAIDRFNDL 67 (102)
Q Consensus 6 ~~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qfi~HaSL---DiVeE~~w~t--~~~YLk~ld~f~~~ 67 (102)
=|++||++|+-=|.-+++. |+..=+--++| =|.+|..|.. .+.+=+.|-++.|+
T Consensus 186 Hf~VvgkK~~k~YvfDltA--------hqf~n~g~s~l~gplIl~e~~W~kryr~a~~~klikY~DF 244 (292)
T PRK15372 186 HFAVVGNKEGKDYVFDVSA--------HQFENRGMSNLNGPLILSADEWVCKYRMATRRKLIYYTDF 244 (292)
T ss_pred eeEEEeeccCcceEEEcch--------hhhhhCCCccCCccccchHHHHHHHHHHhhhcceEEeecc
Confidence 4899999999999998864 33333445666 3688999975 34444555555543
No 17
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=25.20 E-value=2.4e+02 Score=20.16 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=22.2
Q ss_pred ceEEEEEEcCCCCeeEEEEccCCCcchhHHHHHHHHHHhhhhhH
Q 034169 3 TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIV 46 (102)
Q Consensus 3 ~~~~~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiV 46 (102)
|.+|++|.++++. .+...+.-.. +.....+-.+..+|+.+
T Consensus 106 Gtv~ial~~~~~~-~~~~~~~~~g---~R~~ir~~~~~~Al~~L 145 (146)
T TIGR00199 106 GTVWFIWIIAKGQ-AYTAEMHFAG---DRETIRALAVRYALHQL 145 (146)
T ss_pred eEEEEEEEeCCCc-EEEEEEecCC---CHHHHHHHHHHHHHHHh
Confidence 5689999987764 3333332222 23333456667777653
No 18
>PRK00549 competence damage-inducible protein A; Provisional
Probab=24.72 E-value=2.5e+02 Score=23.30 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=27.7
Q ss_pred ceEEEEEEcCCCC-eeEEEEccCCCcchhHHHHHHHHHHhhhhhHHHhh
Q 034169 3 TTACFIIVSRNEI-PIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA 50 (102)
Q Consensus 3 ~~~~~aIVG~~d~-PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiVeE~~ 50 (102)
|.+|++|.++++. ......|. . +.....+..+..|||.+-+.+
T Consensus 368 G~v~i~i~~~~~~~~~~~~~~~--g---~r~~ir~~~~~~aL~~l~~~l 411 (414)
T PRK00549 368 GTVYIGLATPGGETVVKELILG--G---SRSDIRERAVTYALDLLRRAL 411 (414)
T ss_pred eeEEEEEEeCCCcEEEEEEecC--C---CHHHHHHHHHHHHHHHHHHHH
Confidence 5789999987652 33333442 2 333445688999999887654
No 19
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=24.37 E-value=2.5e+02 Score=19.53 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=29.3
Q ss_pred ceEEEEEEcCCCCeeEEE---EccCC-CcchhHHHHHHHHHHhhhhhHH
Q 034169 3 TTACFIIVSRNEIPIYEA---EVGSA-VKREDAAQLHQFILHAALDIVQ 47 (102)
Q Consensus 3 ~~~~~aIVG~~d~PLYe~---~~~s~-~~~~~~~~~~qfi~HaSLDiVe 47 (102)
+.-.++|-+..++||-.. .+..+ .+.+-....+.++.|.-.|.||
T Consensus 106 g~~ii~iT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~~~~h~l~~~~~ 154 (154)
T TIGR00441 106 GMKTITLAGKDGGKMAGLADIELRVPHFYTPRIQEIHIKVIHILCQLIE 154 (154)
T ss_pred CCEEEEEeCCCCCchhhhCCEEEEeCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 345788889899998642 22211 1223345567899999998885
No 20
>PF12100 DUF3576: Domain of unknown function (DUF3576); InterPro: IPR021959 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 100 amino acids in length. This domain has a single completely conserved residue G that may be functionally important.
Probab=24.05 E-value=1e+02 Score=21.53 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=28.7
Q ss_pred HHHHHHhhhhhHHHhhhccCccccccccccCCeEEEE-EEeCCc
Q 034169 35 HQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSV-YVTAGH 77 (102)
Q Consensus 35 ~qfi~HaSLDiVeE~~w~t~~~YLk~ld~f~~~~Vsa-yvT~~~ 77 (102)
+-|+=.||||.++ -|=|...|+|...-+.+ |.+|.+
T Consensus 5 N~yLWrASLdtLs-------FmPl~saD~~gGVI~TdWY~~p~~ 41 (103)
T PF12100_consen 5 NAYLWRASLDTLS-------FMPLASADPFGGVIVTDWYSPPPG 41 (103)
T ss_pred hHHHHHHHHHHHh-------hcchhhcCCCCCEEEeccccCCCC
Confidence 5678889999998 45578889999999999 777543
No 21
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.62 E-value=1.8e+02 Score=21.76 Aligned_cols=49 Identities=6% Similarity=0.173 Sum_probs=32.9
Q ss_pred ceEEEEEEcCCCCeeEEE----Ecc--CCC-cchhHHHHHHHHHHhhhhhHHHhhh
Q 034169 3 TTACFIIVSRNEIPIYEA----EVG--SAV-KREDAAQLHQFILHAALDIVQDLAW 51 (102)
Q Consensus 3 ~~~~~aIVG~~d~PLYe~----~~~--s~~-~~~~~~~~~qfi~HaSLDiVeE~~w 51 (102)
+.-.++|-|..++||-.. ++. -+. ...-.+..+.++.|.-.++||+...
T Consensus 136 G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~~~~v~e~h~~i~H~l~~~v~~~~~ 191 (196)
T PRK10886 136 DMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLF 191 (196)
T ss_pred CCEEEEEeCCCCChhhhccccCCEEEEcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999998764 221 111 1122344567999999999998874
No 22
>PF03558 TBSV_P22: TBSV core protein P21/P22; InterPro: IPR005332 Two small nested genes (p19 and p22) are located near the 3' end of the genome of tomato bushy stunt virus (TBSV) - the p19 gene encodes a soluble protein, whereas the p22 gene specifies a membrane-associated protein. p22 is required for cell-to-cell movement in all plants tested [].; GO: 0019028 viral capsid
Probab=21.42 E-value=66 Score=24.48 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=13.8
Q ss_pred EEEeCCceEEEEeeCc
Q 034169 71 VYVTAGHDLCYFTTLG 86 (102)
Q Consensus 71 ayvT~~~iKfil~~~~ 86 (102)
||.|.++|||++++-.
T Consensus 54 gY~t~~~Vr~~itP~V 69 (189)
T PF03558_consen 54 GYITIRDVRFVITPHV 69 (189)
T ss_pred ceeeceeeEEEEeeee
Confidence 8999999999987543
No 23
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.11 E-value=2.6e+02 Score=19.66 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=29.4
Q ss_pred ceEEEEEEcCCCCeeEEE---Ecc-CCCcchhHHHHHHHHHHhhhhhHH
Q 034169 3 TTACFIIVSRNEIPIYEA---EVG-SAVKREDAAQLHQFILHAALDIVQ 47 (102)
Q Consensus 3 ~~~~~aIVG~~d~PLYe~---~~~-s~~~~~~~~~~~qfi~HaSLDiVe 47 (102)
+.-.++|.+..++||-.. .+. +....+..+..++|+.|+--+.|+
T Consensus 128 Ga~vI~IT~~~~s~La~~aD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (177)
T cd05006 128 GMKTIALTGRDGGKLLELADIEIHVPSDDTPRIQEVHLLIGHILCELVE 176 (177)
T ss_pred CCEEEEEeCCCCCchhhhCCEEEEeCCCChHHHHHHHHHHHHHHHHHHh
Confidence 345688889988897642 111 112234456678899999888876
No 24
>PF04001 Vhr1: Transcription factor Vhr1; InterPro: IPR007147 This is a family of proteins of unknown function found in yeast.
Probab=20.40 E-value=18 Score=24.91 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=18.9
Q ss_pred HhhhhhHHHhhhcc-CccccccccccC
Q 034169 40 HAALDIVQDLAWTT-SAMFLKAIDRFN 65 (102)
Q Consensus 40 HaSLDiVeE~~w~t-~~~YLk~ld~f~ 65 (102)
..-|...||+.|.. .+--|.+||+|+
T Consensus 13 R~~LnF~De~~WK~FSsRRLELId~~~ 39 (95)
T PF04001_consen 13 REQLNFHDERKWKRFSSRRLELIDKFD 39 (95)
T ss_pred HHHhCCccHHHHHHHHHHHHHHHHHcC
Confidence 44588899999975 455577777765
No 25
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.29 E-value=3.5e+02 Score=19.72 Aligned_cols=48 Identities=6% Similarity=0.123 Sum_probs=31.2
Q ss_pred ceEEEEEEcCCCCeeEEE-----EccCCCcchhHHHHHHHHHHhhhhhHHHhh
Q 034169 3 TTACFIIVSRNEIPIYEA-----EVGSAVKREDAAQLHQFILHAALDIVQDLA 50 (102)
Q Consensus 3 ~~~~~aIVG~~d~PLYe~-----~~~s~~~~~~~~~~~qfi~HaSLDiVeE~~ 50 (102)
+.-.++|-|..++||-.. ..++............+++|+-.|+||+..
T Consensus 138 g~~iI~iT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~ 190 (192)
T PRK00414 138 GMKVITLTGKDGGKMAGLADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEM 190 (192)
T ss_pred CCeEEEEeCCCCChhHHhCCEEEEeCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788999888888552 122211122334456789999999999875
No 26
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=20.22 E-value=2.2e+02 Score=18.98 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=22.2
Q ss_pred ccCCeEEEEEEeCCc------eEEEEeeCceeecchhhhh
Q 034169 63 RFNDLVVSVYVTAGH------DLCYFTTLGMMMGSRAFSK 96 (102)
Q Consensus 63 ~f~~~~VsayvT~~~------iKfil~~~~~~~~~~~~~~ 96 (102)
..+++.+.||+++.. -..++-.|++.-++..+.+
T Consensus 19 ~~~~~~i~G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~ 58 (119)
T PF01119_consen 19 EDEDFSIEGYISKPDVSRSSRDRQFIFVNGRPVENKALSK 58 (119)
T ss_dssp EECCEEEEEEEE-SSCSBSSCTCEEEEETTEEE--HHHHH
T ss_pred cCCCEEEEEEEECchhccCCCCcEEEEeCCCeEeChHHHH
Confidence 466799999999652 3555668888888775543
No 27
>PF07667 DUF1600: Protein of unknown function (DUF1600); InterPro: IPR011631 These proteins appear to be specific to Mycoplasma species. They are of unknown function.
Probab=20.03 E-value=69 Score=22.63 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=19.6
Q ss_pred CccccccccccCCeEEEEEEeCCce
Q 034169 54 SAMFLKAIDRFNDLVVSVYVTAGHD 78 (102)
Q Consensus 54 ~~~YLk~ld~f~~~~VsayvT~~~i 78 (102)
+-.|+-..|..+.|.|||.+||++-
T Consensus 55 tiPf~~~~~~g~~YsVYg~~Tnt~~ 79 (114)
T PF07667_consen 55 TIPFLYKTDNGSTYSVYGWFTNTKD 79 (114)
T ss_pred HhhHheEecCCcEEEEEeeecccCC
Confidence 3556666777789999999999864
Done!