Query 034169
Match_columns 102
No_of_seqs 106 out of 222
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 17:59:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3w_A Sedlin, trafficking pro 100.0 1.1E-28 3.7E-33 175.1 11.0 97 1-97 3-103 (142)
2 3pr6_A Trapp-associated protei 99.9 4.3E-26 1.5E-30 167.1 6.7 92 6-97 12-116 (162)
3 2j3t_C Trafficking protein par 99.8 2.8E-20 9.6E-25 132.5 11.3 95 3-98 2-100 (145)
4 3cue_C Transport protein parti 99.6 8.4E-16 2.9E-20 111.1 7.3 94 3-98 2-106 (159)
5 2j3t_D Trafficking protein par 99.5 8.9E-15 3E-19 111.3 6.8 89 6-97 83-172 (219)
6 3cue_A Transport protein parti 97.9 0.00012 3.9E-09 55.7 10.6 32 54-88 117-148 (219)
7 2wzp_P Lactococcal phage P2 OR 44.0 1.2 4.1E-05 34.3 -3.4 18 35-52 31-48 (326)
8 2a9s_A Competence/damage-induc 28.8 1.5E+02 0.0052 20.8 6.0 45 2-50 121-166 (171)
9 2zvk_U DNA polymerase ETA, pro 13.2 50 0.0017 16.9 0.3 9 90-98 11-19 (26)
10 1hcq_A Protein (estrogen recep 11.9 61 0.0021 20.3 0.5 11 90-100 26-36 (84)
No 1
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=99.96 E-value=1.1e-28 Score=175.08 Aligned_cols=97 Identities=36% Similarity=0.592 Sum_probs=87.3
Q ss_pred CCceEEEEEEcCCCCeeEEEEccCCCc---chhHHHHHHHHHHhhhhhHHHhhhccCccccccccccCCeEEEEEEeCCc
Q 034169 1 MATTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGH 77 (102)
Q Consensus 1 m~~~~~~aIVG~~d~PLYe~~~~s~~~---~~~~~~~~qfi~HaSLDiVeE~~w~t~~~YLk~ld~f~~~~VsayvT~~~ 77 (102)
|++.+||+|||++|+|||++++++.++ +++.+++.||++|++||++||+.|+++++|||.+|+|++|+||||+|+|+
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence 777999999999999999999987543 45677888999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCce-eecchhhhhh
Q 034169 78 DLCYFTTLGM-MMGSRAFSKR 97 (102)
Q Consensus 78 iKfil~~~~~-~~~~~~~~~~ 97 (102)
+||+++++.. --+-+.|+++
T Consensus 83 ~Kfvl~~d~~~~~~i~~~~~~ 103 (142)
T 2j3w_A 83 MRFIMLHDVRQEDGIKNFFTD 103 (142)
T ss_dssp CEEEEEESSCCHHHHHHHHHH
T ss_pred cEEEEEeCCCCcHHHHHHHHH
Confidence 9999998874 5566778776
No 2
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.3e-26 Score=167.12 Aligned_cols=92 Identities=11% Similarity=0.066 Sum_probs=73.0
Q ss_pred EEEEEcCCCCeeEEEEccCCCcchhHHHHHHHHHHhhhhhHHHhh--hccCc--cccccccccCCeEEEEEE-eCCceEE
Q 034169 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSA--MFLKAIDRFNDLVVSVYV-TAGHDLC 80 (102)
Q Consensus 6 ~~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiVeE~~--w~t~~--~YLk~ld~f~~~~Vsayv-T~~~iKf 80 (102)
+++|||++|+|||++.+++.....+.....||++|+|||++||++ |++++ +|||+++++++++||||+ |+|++||
T Consensus 12 FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vKf 91 (162)
T 3pr6_A 12 FVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLKI 91 (162)
T ss_dssp EEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCEE
T ss_pred EEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceEE
Confidence 566999999999999998764333445667999999999999999 98865 799999999999999997 9999999
Q ss_pred EEeeCc----eeec----chhhhhh
Q 034169 81 YFTTLG----MMMG----SRAFSKR 97 (102)
Q Consensus 81 il~~~~----~~~~----~~~~~~~ 97 (102)
|++.+. .++| -++||++
T Consensus 92 Vl~~d~~~~~~~~D~~~~Ik~~F~~ 116 (162)
T 3pr6_A 92 VIGFEQKSLSGADDEFEAINQIFET 116 (162)
T ss_dssp EEEEEGGGCCCCHHHHHHHHHHHHH
T ss_pred EEEEccCCcccccchHHHHHHHHHH
Confidence 987654 3444 3467764
No 3
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=99.83 E-value=2.8e-20 Score=132.53 Aligned_cols=95 Identities=13% Similarity=-0.016 Sum_probs=83.5
Q ss_pred ceEEEEEEcCCCCeeEEEEccCCC--c-c-hhHHHHHHHHHHhhhhhHHHhhhccCccccccccccCCeEEEEEEeCCce
Q 034169 3 TTACFIIVSRNEIPIYEAEVGSAV--K-R-EDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHD 78 (102)
Q Consensus 3 ~~~~~aIVG~~d~PLYe~~~~s~~--~-~-~~~~~~~qfi~HaSLDiVeE~~w~t~~~YLk~ld~f~~~~VsayvT~~~i 78 (102)
+.+||+|||++|+|||+++++.++ + . ++...+.++++|+.+|++++..|.++.++++.+ ++++|+|++|+|+|++
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~-~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSF-QTSRYKLHYYETPTGI 80 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEE-ECSSCEEEEEECTTSC
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEE-ecCCEEEEEEEcCCCC
Confidence 579999999999999999997643 1 1 344455699999999999999999888999988 8999999999999999
Q ss_pred EEEEeeCceeecchhhhhhh
Q 034169 79 LCYFTTLGMMMGSRAFSKRS 98 (102)
Q Consensus 79 Kfil~~~~~~~~~~~~~~~~ 98 (102)
|||++++..--+-+.|+++-
T Consensus 81 KFvl~td~~~~~i~~~l~~i 100 (145)
T 2j3t_C 81 KVVMNTDLGVGPIRDVLHHI 100 (145)
T ss_dssp EEEEEECTTCCCCHHHHHHH
T ss_pred EEEEEecCCcchHHHHHHHH
Confidence 99999999888889999874
No 4
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=8.4e-16 Score=111.12 Aligned_cols=94 Identities=17% Similarity=0.046 Sum_probs=75.2
Q ss_pred ceEEEEEEcCCCCeeEEEEccCC----------CcchhHHHHHHHHHHhhhhhHHHhhhcc-CccccccccccCCeEEEE
Q 034169 3 TTACFIIVSRNEIPIYEAEVGSA----------VKREDAAQLHQFILHAALDIVQDLAWTT-SAMFLKAIDRFNDLVVSV 71 (102)
Q Consensus 3 ~~~~~aIVG~~d~PLYe~~~~s~----------~~~~~~~~~~qfi~HaSLDiVeE~~w~t-~~~YLk~ld~f~~~~Vsa 71 (102)
+.+||.|||++++|||++++... ...++..++.+.++|+..+++++..|.. .+-| ...+.++|++++
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f--~~~~T~~ykl~~ 79 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDI--RSISTGKYRVHT 79 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCE--EEEECSSCBEEE
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCe--EEEeeCCEEEEE
Confidence 57899999999999999999642 1134556678888888888888888865 2444 455678999999
Q ss_pred EEeCCceEEEEeeCceeecchhhhhhh
Q 034169 72 YVTAGHDLCYFTTLGMMMGSRAFSKRS 98 (102)
Q Consensus 72 yvT~~~iKfil~~~~~~~~~~~~~~~~ 98 (102)
|.|+|++|||++++..--+-+.|+|+-
T Consensus 80 ~eT~TgiKFvl~td~~~~~i~~~l~~i 106 (159)
T 3cue_C 80 YCTASGLWFVLLSDFKQQSYTQVLQYI 106 (159)
T ss_dssp ECCSSCCEEEEECCSSSSCTHHHHHHH
T ss_pred EEeCCCCEEEEEeCCCcchHHHHHHHH
Confidence 999999999999999888888998874
No 5
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=99.54 E-value=8.9e-15 Score=111.28 Aligned_cols=89 Identities=7% Similarity=-0.001 Sum_probs=72.2
Q ss_pred EEEEEcCCCCeeEEEEccCCCcchhHHHHHHHHHHhhhhhHHHhhhccC-ccccccccccCCeEEEEEEeCCceEEEEee
Q 034169 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTS-AMFLKAIDRFNDLVVSVYVTAGHDLCYFTT 84 (102)
Q Consensus 6 ~~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiVeE~~w~t~-~~YLk~ld~f~~~~VsayvT~~~iKfil~~ 84 (102)
...|+|++|+|||++.+.+... +....+...++| |||++++++|..+ ...+..+ .+++|+++||+|+|++||++++
T Consensus 83 ~~~iigk~N~PLyir~f~~~l~-sn~~L~lag~lh-SLd~i~~klsp~~~s~g~~~~-~T~~ykl~~y~T~TgiKFVLlt 159 (219)
T 2j3t_D 83 LEYLGNPANYPVSIRFGRPRLT-SNEKLMLASMFH-SLFAIGSQLSPEQGSSGIEML-ETDTFKLHCYQTLTGIKFVVLA 159 (219)
T ss_dssp HHHTTCGGGCSEEEEEECCCCC-HHHHHHHHHHHH-HHHHHHHHTCSSSSCCSCSEE-EESSCEEEEEECTTSCEEEEEE
T ss_pred eeeeecCCCCceEEEecCCCCC-hhHHHHHHHHHH-HHHHHHHHhCCCCCCCCeeEE-ecCceEEEEEEcCCCCEEEEEe
Confidence 3568999999999999976432 223334567999 9999999999754 4566555 6899999999999999999999
Q ss_pred Cceeecchhhhhh
Q 034169 85 LGMMMGSRAFSKR 97 (102)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (102)
+..--+-+.|+|+
T Consensus 160 d~~~~~ir~~l~~ 172 (219)
T 2j3t_D 160 DPRQAGIDSLLRK 172 (219)
T ss_dssp CTTCCCHHHHHHH
T ss_pred cCCchHHHHHHHH
Confidence 9887788888887
No 6
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00012 Score=55.69 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=25.4
Q ss_pred CccccccccccCCeEEEEEEeCCceEEEEeeCcee
Q 034169 54 SAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTLGMM 88 (102)
Q Consensus 54 ~~~YLk~ld~f~~~~VsayvT~~~iKfil~~~~~~ 88 (102)
..+++.. .++|+||||+|+|++|||++++...
T Consensus 117 ~g~~~~~---Td~y~l~~f~T~TGiKFVlltd~~~ 148 (219)
T 3cue_A 117 SGLRQLC---TDQFTMFIYQTLTGLKFVAISSSVM 148 (219)
T ss_dssp SSCCEEE---ESSCEEEEEECTTSCEEEEEESSCC
T ss_pred CceEEEE---eCCEEEEEEEcCCCCEEEEEecCCC
Confidence 3454433 5577899999999999999988876
No 7
>2wzp_P Lactococcal phage P2 ORF15; baseplate, viral protein; 2.60A {Lactococcus phage P2} PDB: 2x53_S 2x54_S 2x5a_S
Probab=44.02 E-value=1.2 Score=34.31 Aligned_cols=18 Identities=33% Similarity=0.693 Sum_probs=16.8
Q ss_pred HHHHHHhhhhhHHHhhhc
Q 034169 35 HQFILHAALDIVQDLAWT 52 (102)
Q Consensus 35 ~qfi~HaSLDiVeE~~w~ 52 (102)
.||-+|..||=-|+++|.
T Consensus 31 rqykihtnldgtddkvwd 48 (326)
T 2wzp_P 31 RQYKIHTNLDGTDDKVWD 48 (326)
T ss_dssp CEEEEESSTTSTTCCEEE
T ss_pred eeeEEeccCCCCccceEe
Confidence 689999999999999995
No 8
>2a9s_A Competence/damage-inducible protein CINA; APC5759, ATC1417, MCSG, protei structure initiative; 1.75A {Agrobacterium tumefaciens} SCOP: c.51.5.1
Probab=28.78 E-value=1.5e+02 Score=20.76 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=29.5
Q ss_pred CceEEEEEEcCCCC-eeEEEEccCCCcchhHHHHHHHHHHhhhhhHHHhh
Q 034169 2 ATTACFIIVSRNEI-PIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA 50 (102)
Q Consensus 2 ~~~~~~aIVG~~d~-PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiVeE~~ 50 (102)
.|.+||++-+++.. -..+..|+ .. +.....+..+..+||.+-+.+
T Consensus 121 vGtV~ia~a~~~~~~~~~~~~f~-~g---~R~~ir~~a~~~AL~~L~~~L 166 (171)
T 2a9s_A 121 VGLVHLATKARNGNVLHHEMRYG-DI---GRTEIRLATVRTALEMLIALN 166 (171)
T ss_dssp TTEEEEEEEETTSCEEEEEEECC-SC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCCEEEEEEECC-CC---CHHHHHHHHHHHHHHHHHHHH
Confidence 36899999988753 34445663 22 233445678889999887654
No 9
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=13.23 E-value=50 Score=16.88 Aligned_cols=9 Identities=22% Similarity=0.102 Sum_probs=6.6
Q ss_pred cchhhhhhh
Q 034169 90 GSRAFSKRS 98 (102)
Q Consensus 90 ~~~~~~~~~ 98 (102)
--|+|||+-
T Consensus 11 TLesFFK~L 19 (26)
T 2zvk_U 11 TLESFFKPL 19 (26)
T ss_pred cHHHHhccC
Confidence 457899874
No 10
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=11.90 E-value=61 Score=20.28 Aligned_cols=11 Identities=55% Similarity=0.872 Sum_probs=8.0
Q ss_pred cchhhhhhhcc
Q 034169 90 GSRAFSKRSMS 100 (102)
Q Consensus 90 ~~~~~~~~~~~ 100 (102)
.=.+||||+..
T Consensus 26 aCk~FFRR~v~ 36 (84)
T 1hcq_A 26 GCKAFFKRSIQ 36 (84)
T ss_dssp HHHHHHHHHHS
T ss_pred Hhhhhhhhccc
Confidence 34689999864
Done!