BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034170
MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVAVFYFHDEFTWLKGFGLFTILVGVSLFN
WYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDEGT

High Scoring Gene Products

Symbol, full name Information P value
AT1G06470 protein from Arabidopsis thaliana 1.3e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034170
        (102 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2009190 - symbol:AT1G06470 species:3702 "Arabi...   309  1.3e-27   1
POMBASE|SPAC22E12.01 - symbol:SPAC22E12.01 "triose phosph...   103  6.3e-05   1
ASPGD|ASPL0000010621 - symbol:AN3948 species:162425 "Emer...    98  0.00041   1


>TAIR|locus:2009190 [details] [associations]
            symbol:AT1G06470 species:3702 "Arabidopsis thaliana"
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0016020 "membrane"
            evidence=IEA;ISS] [GO:0006863 "purine nucleobase transport"
            evidence=RCA] InterPro:IPR000620 Pfam:PF00892 Pfam:PF03151
            GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC007592
            GO:GO:0008643 eggNOG:COG0697 InterPro:IPR004853 EMBL:BT000433
            EMBL:BT003372 IPI:IPI00536087 PIR:E86200 RefSeq:NP_172135.2
            RefSeq:NP_973772.1 UniGene:At.42340 PRIDE:Q8H184
            EnsemblPlants:AT1G06470.1 EnsemblPlants:AT1G06470.2 GeneID:837159
            KEGG:ath:AT1G06470 TAIR:At1g06470 HOGENOM:HOG000070506
            InParanoid:Q8H184 KO:K15280 OMA:TELNICG PhylomeDB:Q8H184
            ProtClustDB:CLSN2690738 Genevestigator:Q8H184 Uniprot:Q8H184
        Length = 414

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 68/106 (64%), Positives = 76/106 (71%)

Query:     1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAV---------AVFYFHDEFTWLKGFGLFT 51
             ML GGALAF MV TE+VLVSVTSAVTV IA V         AVFYFHDEFTWLKG GL  
Sbjct:   305 MLFGGALAFCMVLTEYVLVSVTSAVTVTIAGVVKEAVTIVVAVFYFHDEFTWLKGVGLMI 364

Query:    52 ILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDD 97
             I+VGVSLFNWYKY KLQ GH  E+     +  + + KYVIL+E+DD
Sbjct:   365 IMVGVSLFNWYKYDKLQKGHKTEEEKQ-LQAPSQTGKYVILDEMDD 409


>POMBASE|SPAC22E12.01 [details] [associations]
            symbol:SPAC22E12.01 "triose phosphate transporter
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005794
            "Golgi apparatus" evidence=IDA] [GO:0008643 "carbohydrate
            transport" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0035436 "triose phosphate transmembrane
            transport" evidence=ISM] [GO:0071917 "triose-phosphate
            transmembrane transporter activity" evidence=ISM]
            PomBase:SPAC22E12.01 Pfam:PF03151 GO:GO:0016021 GO:GO:0005794
            EMBL:CU329670 GO:GO:0016020 GO:GO:0008643 eggNOG:COG0697
            InterPro:IPR004853 GO:GO:0071917 KO:K15280 OMA:TELNICG PIR:T50265
            RefSeq:NP_594827.2 EnsemblFungi:SPAC22E12.01.1 GeneID:2541816
            KEGG:spo:SPAC22E12.01 HOGENOM:HOG000111198 OrthoDB:EOG4GF6Q9
            NextBio:20802904 Uniprot:Q10354
        Length = 374

 Score = 103 (41.3 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 24/75 (32%), Positives = 40/75 (53%)

Query:     1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAV---------AVFYFHDEFTWLKGFGLFT 51
             +L  G LAFFMV++EF L+  TS VT+ +  +         +  ++HD    +   GL  
Sbjct:   281 ILVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKEIITIIASTLFYHDILLPINIVGLVI 340

Query:    52 ILVGVSLFNWYKYQK 66
              L G+ ++N+Y+  K
Sbjct:   341 TLCGIGVYNYYRITK 355


>ASPGD|ASPL0000010621 [details] [associations]
            symbol:AN3948 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005794 "Golgi
            apparatus" evidence=IEA] [GO:0003674 "molecular_function"
            evidence=ND] Pfam:PF03151 GO:GO:0016021 EMBL:BN001302
            eggNOG:COG0697 EMBL:AACD01000064 InterPro:IPR004853 KO:K15280
            OrthoDB:EOG4GF6Q9 RefSeq:XP_661552.1 ProteinModelPortal:Q5B682
            EnsemblFungi:CADANIAT00004745 GeneID:2873372 KEGG:ani:AN3948.2
            HOGENOM:HOG000215387 OMA:TMCKSSA Uniprot:Q5B682
        Length = 582

 Score = 98 (39.6 bits), Expect = 0.00041, P = 0.00041
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query:     5 GALAFFMVSTEFVLVSVTSAVTVQIAAV---------AVFYFHDEFTWLKGFGLFTILVG 55
             G LAF M+S+EF L+  +S VT+ I  +         A   FHD+ T +   GL   +  
Sbjct:   374 GVLAFCMISSEFALLKRSSVVTLSICGIFKEVVTITAAGVIFHDKLTAVNVTGLIVTIGS 433

Query:    56 VSLFNWYKYQKL--QAGHANED 75
             ++ +N+ K  K+  +A H N D
Sbjct:   434 IASYNYMKVSKMRAEAQHNNWD 455


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      102       102   0.00091  102 3  11 22  0.37    30
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  492 (52 KB)
  Total size of DFA:  105 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.99u 0.12s 9.11t   Elapsed:  00:00:00
  Total cpu time:  8.99u 0.12s 9.11t   Elapsed:  00:00:00
  Start:  Fri May 10 16:36:51 2013   End:  Fri May 10 16:36:51 2013

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