Query 034170
Match_columns 102
No_of_seqs 105 out of 577
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 10:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1441 Glucose-6-phosphate/ph 99.7 8.2E-17 1.8E-21 128.5 5.8 68 2-69 239-315 (316)
2 PF03151 TPT: Triose-phosphate 99.6 8E-16 1.7E-20 106.4 1.2 60 2-61 85-153 (153)
3 KOG1443 Predicted integral mem 99.2 5.2E-12 1.1E-16 101.7 1.1 59 2-60 247-314 (349)
4 KOG1444 Nucleotide-sugar trans 99.2 2.1E-11 4.5E-16 97.7 3.5 71 1-71 231-310 (314)
5 KOG1442 GDP-fucose transporter 99.1 4.2E-12 9.1E-17 101.5 -2.7 71 1-71 258-337 (347)
6 PTZ00343 triose or hexose phos 99.1 4.8E-11 1E-15 94.9 2.2 62 2-63 280-350 (350)
7 TIGR00817 tpt Tpt phosphate/ph 98.9 1.6E-09 3.5E-14 83.1 3.7 59 7-65 230-297 (302)
8 PF08449 UAA: UAA transporter 98.5 7E-08 1.5E-12 74.8 2.1 65 2-66 229-302 (303)
9 COG5070 VRG4 Nucleotide-sugar 97.9 4E-06 8.7E-11 66.2 1.9 72 1-72 227-307 (309)
10 PLN00411 nodulin MtN21 family 97.2 0.00039 8.4E-09 56.2 3.5 68 14-81 272-348 (358)
11 KOG1583 UDP-N-acetylglucosamin 97.0 0.0012 2.5E-08 53.4 4.6 65 2-66 246-319 (330)
12 PF06027 DUF914: Eukaryotic pr 96.5 0.00078 1.7E-08 54.5 0.3 48 16-63 251-307 (334)
13 PRK10532 threonine and homoser 95.9 0.0055 1.2E-07 47.2 2.2 49 14-62 225-282 (293)
14 PF00892 EamA: EamA-like trans 95.8 0.0036 7.8E-08 40.5 0.7 52 9-60 65-125 (126)
15 TIGR00803 nst UDP-galactose tr 95.5 0.0007 1.5E-08 50.0 -3.7 49 11-59 165-222 (222)
16 PF04142 Nuc_sug_transp: Nucle 95.4 0.0033 7.1E-08 48.4 -0.5 62 2-63 21-91 (244)
17 PRK15051 4-amino-4-deoxy-L-ara 95.3 0.0069 1.5E-07 41.5 0.9 28 32-59 80-107 (111)
18 PF06679 DUF1180: Protein of u 95.1 0.024 5.3E-07 42.0 3.3 15 88-102 140-154 (163)
19 TIGR00688 rarD rarD protein. T 95.0 0.011 2.3E-07 44.3 1.2 56 3-58 75-139 (256)
20 PLN00411 nodulin MtN21 family 94.7 0.015 3.2E-07 47.0 1.4 59 2-60 82-155 (358)
21 PRK15430 putative chlorampheni 94.5 0.043 9.4E-07 42.3 3.4 55 12-66 227-290 (296)
22 PRK11689 aromatic amino acid e 94.3 0.03 6.6E-07 43.1 2.3 50 12-61 229-287 (295)
23 PF13536 EmrE: Multidrug resis 94.2 0.03 6.5E-07 37.5 1.8 58 5-62 41-107 (113)
24 KOG1580 UDP-galactose transpor 94.2 0.037 8.1E-07 44.5 2.5 54 5-58 248-310 (337)
25 PRK15430 putative chlorampheni 94.2 0.027 5.9E-07 43.4 1.7 56 4-59 79-143 (296)
26 PRK10452 multidrug efflux syst 94.1 0.02 4.4E-07 40.2 0.9 30 32-61 74-103 (120)
27 KOG1581 UDP-galactose transpor 94.1 0.012 2.6E-07 47.9 -0.4 54 13-66 256-318 (327)
28 PF07857 DUF1632: CEO family ( 93.9 0.021 4.6E-07 44.8 0.6 35 41-75 114-148 (254)
29 TIGR00950 2A78 Carboxylate/Ami 93.3 0.047 1E-06 40.3 1.6 52 9-60 58-118 (260)
30 TIGR00817 tpt Tpt phosphate/ph 93.2 0.045 9.9E-07 41.9 1.5 55 4-58 71-134 (302)
31 KOG2766 Predicted membrane pro 93.2 0.043 9.3E-07 44.4 1.3 56 5-60 231-298 (336)
32 PRK11453 O-acetylserine/cystei 93.0 0.066 1.4E-06 41.2 2.1 47 17-63 234-289 (299)
33 PRK09541 emrE multidrug efflux 92.9 0.082 1.8E-06 36.5 2.3 30 32-61 74-103 (110)
34 TIGR03340 phn_DUF6 phosphonate 92.7 0.081 1.8E-06 40.3 2.2 46 13-58 226-280 (281)
35 TIGR03340 phn_DUF6 phosphonate 92.7 0.078 1.7E-06 40.4 2.1 57 4-60 69-134 (281)
36 TIGR00950 2A78 Carboxylate/Ami 92.3 0.057 1.2E-06 39.8 0.9 45 13-57 207-260 (260)
37 PRK11272 putative DMT superfam 92.0 0.13 2.8E-06 39.5 2.6 49 14-62 229-286 (292)
38 PF06027 DUF914: Eukaryotic pr 91.4 0.1 2.2E-06 42.4 1.4 58 5-62 86-152 (334)
39 PRK10650 multidrug efflux syst 91.1 0.17 3.7E-06 35.0 2.1 29 32-60 79-107 (109)
40 PRK02971 4-amino-4-deoxy-L-ara 91.0 0.079 1.7E-06 37.4 0.4 27 35-61 96-122 (129)
41 COG2076 EmrE Membrane transpor 90.1 0.25 5.3E-06 34.4 2.2 30 32-61 74-103 (106)
42 PRK11431 multidrug efflux syst 89.5 0.26 5.7E-06 33.8 2.0 29 32-60 73-101 (105)
43 PTZ00343 triose or hexose phos 89.3 0.19 4.2E-06 40.1 1.4 27 32-58 157-183 (350)
44 COG2510 Predicted membrane pro 87.2 0.33 7.2E-06 35.4 1.4 27 32-58 110-136 (140)
45 PF08449 UAA: UAA transporter 85.4 0.36 7.7E-06 37.4 0.8 36 32-67 107-142 (303)
46 PRK11689 aromatic amino acid e 83.8 0.52 1.1E-05 36.2 1.1 29 32-60 108-136 (295)
47 COG2962 RarD Predicted permeas 81.9 0.74 1.6E-05 37.2 1.3 39 32-70 254-292 (293)
48 COG0697 RhaT Permeases of the 81.3 0.86 1.9E-05 33.2 1.4 52 10-61 82-143 (292)
49 PRK11453 O-acetylserine/cystei 80.3 1 2.3E-05 34.6 1.6 29 32-60 103-131 (299)
50 COG0697 RhaT Permeases of the 80.0 1.1 2.5E-05 32.6 1.6 49 14-62 231-288 (292)
51 KOG2234 Predicted UDP-galactos 78.9 1.1 2.3E-05 37.0 1.3 59 2-60 96-163 (345)
52 TIGR00776 RhaT RhaT L-rhamnose 77.6 1.5 3.4E-05 33.9 1.8 30 32-61 255-288 (290)
53 KOG4812 Golgi-associated prote 77.6 7.6 0.00016 31.0 5.6 66 2-70 164-253 (262)
54 KOG3912 Predicted integral mem 77.6 0.32 6.9E-06 39.9 -2.0 51 12-62 276-335 (372)
55 PF05961 Chordopox_A13L: Chord 77.2 2.6 5.7E-05 27.3 2.5 19 46-64 7-25 (68)
56 KOG2765 Predicted membrane pro 77.1 0.46 1E-05 39.9 -1.3 61 5-65 166-235 (416)
57 PRK11272 putative DMT superfam 73.5 2.3 4.9E-05 32.6 1.8 28 32-60 113-140 (292)
58 PF00893 Multi_Drug_Res: Small 72.2 1.5 3.3E-05 28.8 0.5 20 32-51 73-92 (93)
59 PHA03049 IMV membrane protein; 71.0 3.8 8.3E-05 26.5 2.1 18 46-63 7-24 (68)
60 PF08507 COPI_assoc: COPI asso 69.3 6.3 0.00014 27.5 3.1 26 32-58 77-102 (136)
61 PF04657 DUF606: Protein of un 69.0 5 0.00011 28.3 2.6 57 2-58 68-138 (138)
62 KOG4510 Permease of the drug/m 63.5 2.2 4.7E-05 34.9 -0.2 29 32-60 140-168 (346)
63 PF14851 FAM176: FAM176 family 62.9 7.8 0.00017 28.5 2.7 17 46-62 31-47 (153)
64 PF10855 DUF2648: Protein of u 62.9 12 0.00027 21.0 2.8 22 48-69 5-26 (33)
65 TIGR00776 RhaT RhaT L-rhamnose 59.0 3.7 8.1E-05 31.8 0.4 32 32-63 103-138 (290)
66 PF07444 Ycf66_N: Ycf66 protei 56.3 9.5 0.00021 25.5 2.0 22 40-61 4-25 (84)
67 PF11346 DUF3149: Protein of u 56.0 17 0.00038 21.3 2.8 33 37-69 7-39 (42)
68 TIGR02797 exbB tonB-system ene 50.2 20 0.00043 27.0 3.1 23 46-68 171-193 (211)
69 PF01102 Glycophorin_A: Glycop 49.9 20 0.00043 25.4 2.9 11 46-56 70-80 (122)
70 PF01618 MotA_ExbB: MotA/TolQ/ 48.8 23 0.0005 24.5 3.1 25 45-69 106-130 (139)
71 PF14283 DUF4366: Domain of un 47.8 4.7 0.0001 31.0 -0.6 24 49-72 167-190 (218)
72 KOG2234 Predicted UDP-galactos 47.7 7.8 0.00017 32.0 0.6 35 32-66 293-327 (345)
73 PRK10801 colicin uptake protei 47.4 23 0.00049 27.1 3.1 24 45-68 175-198 (227)
74 COG4736 CcoQ Cbb3-type cytochr 46.7 11 0.00024 23.8 1.0 17 47-63 16-32 (60)
75 PF04971 Lysis_S: Lysis protei 46.5 22 0.00047 23.0 2.4 34 39-72 26-65 (68)
76 TIGR02796 tolQ TolQ protein. T 44.8 27 0.00058 26.4 3.1 23 46-68 175-197 (215)
77 COG0811 TolQ Biopolymer transp 43.9 28 0.00061 26.3 3.1 23 45-67 170-192 (216)
78 PRK10414 biopolymer transport 41.7 31 0.00067 26.8 3.1 21 46-66 182-202 (244)
79 PF10639 UPF0546: Uncharacteri 39.4 14 0.0003 25.8 0.7 27 32-58 85-111 (113)
80 cd08764 Cyt_b561_CG1275_like N 38.8 17 0.00037 27.9 1.2 33 43-76 175-208 (214)
81 PF04713 Pox_I5: Poxvirus prot 38.2 22 0.00048 23.5 1.5 57 6-63 15-73 (77)
82 KOG1582 UDP-galactose transpor 37.8 8.4 0.00018 31.7 -0.6 57 7-63 269-334 (367)
83 TIGR02805 exbB2 tonB-system en 36.6 46 0.001 24.1 3.1 24 45-68 106-129 (138)
84 PF12868 DUF3824: Domain of un 36.5 49 0.0011 23.8 3.2 22 47-68 12-33 (137)
85 PF10176 DUF2370: Protein of u 35.9 60 0.0013 25.5 3.8 16 3-18 92-107 (233)
86 PF05545 FixQ: Cbb3-type cytoc 35.3 27 0.00058 20.3 1.5 18 47-64 16-33 (49)
87 PF04277 OAD_gamma: Oxaloaceta 35.2 19 0.00041 22.5 0.8 6 47-52 10-15 (79)
88 PRK12437 prolipoprotein diacyl 34.1 31 0.00068 26.8 2.0 21 41-61 235-255 (269)
89 PF14576 SEO_N: Sieve element 33.9 32 0.0007 27.7 2.1 20 4-23 116-135 (286)
90 TIGR00847 ccoS cytochrome oxid 33.8 57 0.0012 19.8 2.7 16 47-62 8-23 (51)
91 PF14880 COX14: Cytochrome oxi 31.6 38 0.00083 20.7 1.8 26 41-66 16-41 (59)
92 PF01528 Herpes_glycop: Herpes 31.1 26 0.00057 29.1 1.2 12 90-101 363-374 (374)
93 PF06365 CD34_antigen: CD34/Po 29.4 45 0.00098 25.6 2.2 23 44-66 105-129 (202)
94 PF13994 PgaD: PgaD-like prote 28.3 74 0.0016 22.3 3.0 19 56-74 81-99 (138)
95 COG2962 RarD Predicted permeas 27.6 22 0.00048 28.8 0.2 30 32-61 115-144 (293)
96 COG3238 Uncharacterized protei 27.4 43 0.00093 24.5 1.7 58 3-60 74-145 (150)
97 PF15061 DUF4538: Domain of un 26.6 56 0.0012 20.5 1.9 18 45-62 9-26 (58)
98 PF11119 DUF2633: Protein of u 26.0 1.7E+02 0.0036 18.5 3.9 11 50-60 18-28 (59)
99 PF08372 PRT_C: Plant phosphor 25.6 60 0.0013 23.9 2.2 11 90-100 36-46 (156)
100 PF11446 DUF2897: Protein of u 25.6 1.4E+02 0.003 18.3 3.5 28 44-71 3-30 (55)
101 PF07423 DUF1510: Protein of u 25.1 42 0.00091 25.9 1.3 18 46-63 19-36 (217)
102 PF05337 CSF-1: Macrophage col 24.9 24 0.00053 28.5 0.0 26 41-67 230-255 (285)
103 PRK13664 hypothetical protein; 24.6 96 0.0021 19.7 2.7 19 46-65 9-27 (62)
104 PF10883 DUF2681: Protein of u 24.5 1.1E+02 0.0024 20.5 3.1 19 48-66 9-27 (87)
105 PRK09757 PTS system N-acetylga 24.3 1E+02 0.0022 24.4 3.4 9 93-101 258-266 (267)
106 cd01324 cbb3_Oxidase_CcoQ Cyto 23.6 44 0.00096 19.8 1.0 20 47-66 17-36 (48)
107 COG1622 CyoA Heme/copper-type 22.6 1E+02 0.0022 24.1 3.1 26 47-72 42-67 (247)
108 PF04342 DUF486: Protein of un 22.4 23 0.00049 24.9 -0.5 32 25-56 71-103 (108)
109 PF11286 DUF3087: Protein of u 22.4 33 0.00072 25.6 0.3 25 32-56 36-63 (165)
110 KOG1278 Endosomal membrane pro 22.3 67 0.0014 28.7 2.2 26 41-66 267-292 (628)
111 PF12259 DUF3609: Protein of u 22.2 94 0.002 25.6 2.9 33 43-75 303-336 (361)
112 KOG1631 Translocon-associated 21.8 1.1E+02 0.0025 24.3 3.2 46 45-90 188-234 (261)
113 PF02990 EMP70: Endomembrane p 20.9 1E+02 0.0022 26.2 3.0 25 41-65 201-225 (521)
114 TIGR00910 2A0307_GadC glutamat 20.9 1E+02 0.0022 25.8 2.9 14 52-65 450-463 (507)
115 PF15361 RIC3: Resistance to i 20.8 1.6E+02 0.0035 21.3 3.6 12 54-65 94-105 (152)
116 COG3169 Uncharacterized protei 20.7 1E+02 0.0022 21.7 2.4 25 32-56 86-110 (116)
117 KOG4782 Predicted membrane pro 20.7 35 0.00077 23.7 0.2 22 38-62 58-79 (108)
118 KOG1623 Multitransmembrane pro 20.5 75 0.0016 25.0 2.0 22 38-59 182-204 (243)
119 COG5264 VTC1 Vacuolar transpor 20.5 59 0.0013 23.4 1.2 33 32-64 50-82 (126)
120 KOG4715 SWI/SNF-related matrix 20.5 97 0.0021 26.0 2.6 18 84-101 164-184 (410)
No 1
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.66 E-value=8.2e-17 Score=128.54 Aligned_cols=68 Identities=28% Similarity=0.479 Sum_probs=63.4
Q ss_pred chhHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 034170 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQA 69 (102)
Q Consensus 2 ~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~~~~ 69 (102)
+++.++||++|++.|++|++|||||++|+| .|+++|++++|+.|++|++++++|+.+|++.|.+++++
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 456699999999999999999999999999 89999999999999999999999999999999887643
No 2
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.56 E-value=8e-16 Score=106.41 Aligned_cols=60 Identities=32% Similarity=0.585 Sum_probs=58.3
Q ss_pred chhHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHH
Q 034170 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 2 ~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~ 61 (102)
+++|+++|++|+++|+++++|||+|++|+| +|+++|||++|+.|++|++++++|+++|+|
T Consensus 85 ~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 85 ILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 578999999999999999999999999999 999999999999999999999999999986
No 3
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.18 E-value=5.2e-12 Score=101.69 Aligned_cols=59 Identities=37% Similarity=0.593 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 2 ~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
.++|.+||++..|||+++.+||.+|++++| +++.+-+|.++..|++|+.+|+.|+.+|.
T Consensus 247 ~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~ 314 (349)
T KOG1443|consen 247 SLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHR 314 (349)
T ss_pred HHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999 88899999999999999999999999993
No 4
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.1e-11 Score=97.72 Aligned_cols=71 Identities=28% Similarity=0.433 Sum_probs=64.2
Q ss_pred CchhHHHHHHHHHHHHHHhccccchhheece--------eeeeeecC-ccccchhhhhhHHHHHHHHHHHHHHHHHhhCC
Q 034170 1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAA--------VAVFYFHD-EFTWLKGFGLFTILVGVSLFNWYKYQKLQAGH 71 (102)
Q Consensus 1 l~~~g~lAF~lnls~F~lI~~TSaLT~sV~G--------lsv~ifgd-~~t~~n~~G~~I~i~G~~~Y~~~k~~~~~~~~ 71 (102)
++++|+++|.++++.|++...+|++|++++| ++.++++| ++++.|++|+.+.++|.++|++.+.++++.++
T Consensus 231 ~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 231 MLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 4689999999999999999999999999999 77777776 89999999999999999999999988765544
No 5
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.2e-12 Score=101.53 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=67.6
Q ss_pred CchhHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHHHhhCC
Q 034170 1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGH 71 (102)
Q Consensus 1 l~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~~~~~~ 71 (102)
|+++|+.+|+||+.+++.|+.||||||+|.| +++.+++|..+...|.|.++.++|..+|+++|.+|+++.+
T Consensus 258 mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 258 MTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS 337 (347)
T ss_pred HHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999999999 9999999999999999999999999999999999987654
No 6
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.07 E-value=4.8e-11 Score=94.86 Aligned_cols=62 Identities=19% Similarity=0.389 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHH
Q 034170 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 63 (102)
Q Consensus 2 ~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k 63 (102)
+++|+.+|+.|.++|.+++++||+|++|++ +|+++|||++|+.+++|.+++++|+++|+++|
T Consensus 280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 468899999999999999999999999999 89999999999999999999999999999875
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.87 E-value=1.6e-09 Score=83.10 Aligned_cols=59 Identities=24% Similarity=0.389 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHHHH
Q 034170 7 LAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 65 (102)
Q Consensus 7 lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~ 65 (102)
..++.|.+.|.+++++||.|.++.+ +|+++|||++|+.+++|.++++.|+.+|++.|.+
T Consensus 230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 3445668889999999999999999 8899999999999999999999999999987643
No 8
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.47 E-value=7e-08 Score=74.75 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=58.0
Q ss_pred chhHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHH
Q 034170 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 2 ~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~ 66 (102)
++.++.+++-....|.+++++||+|.++.. +|+++|++++++.+++|+++.+.|+.+|++.|.++
T Consensus 229 ~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 229 LLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 456667777777889999999999999999 89999999999999999999999999999987654
No 9
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.95 E-value=4e-06 Score=66.25 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=65.1
Q ss_pred CchhHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHHHhhCC
Q 034170 1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGH 71 (102)
Q Consensus 1 l~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~~~~~~ 71 (102)
|+++|+.++...+|.-+++..||+-|++..| .|.++|+.|++...++.+.+-....+.|.+.|.+++|+++
T Consensus 227 m~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~ 306 (309)
T COG5070 227 MFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQK 306 (309)
T ss_pred HHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999999999 7888899999999999999999999999999887665554
Q ss_pred C
Q 034170 72 A 72 (102)
Q Consensus 72 ~ 72 (102)
.
T Consensus 307 ~ 307 (309)
T COG5070 307 D 307 (309)
T ss_pred C
Confidence 3
No 10
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.16 E-value=0.00039 Score=56.17 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=51.2
Q ss_pred HHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcc
Q 034170 14 TEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSR 81 (102)
Q Consensus 14 s~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~~~~~~~~~~~~~~~~ 81 (102)
..+..+++.+|..-++.. ++++++||++++..++|.++.+.|+.+-++.|.+|.++.+..+.++.+.|
T Consensus 272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~ 348 (358)
T PLN00411 272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFSGKEKTP 348 (358)
T ss_pred HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCccccccch
Confidence 344578888888777766 89999999999999999999999999988766555444444434444443
No 11
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.0012 Score=53.45 Aligned_cols=65 Identities=23% Similarity=0.369 Sum_probs=52.7
Q ss_pred chhHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHH
Q 034170 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 2 ~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~ 66 (102)
+.|.+.-++-.=..+.+..+|++||.++.= +|+..|.+++|+.-++|-.+..+|.++|+-...+.
T Consensus 246 l~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~ 319 (330)
T KOG1583|consen 246 LFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHP 319 (330)
T ss_pred HHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 344444455555566677899999999887 99999999999999999999999999999765443
No 12
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.49 E-value=0.00078 Score=54.51 Aligned_cols=48 Identities=21% Similarity=0.551 Sum_probs=41.6
Q ss_pred HHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHH
Q 034170 16 FVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 63 (102)
Q Consensus 16 F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k 63 (102)
-.+++.+||..+++.= +++++||.++++.-++|.++.++|.+.|+...
T Consensus 251 p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 251 PIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 3478899998887743 88899999999999999999999999999743
No 13
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=95.85 E-value=0.0055 Score=47.18 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=42.0
Q ss_pred HHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHH
Q 034170 14 TEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 62 (102)
Q Consensus 14 s~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~ 62 (102)
..+..+++.+|-+.++.. +++++|||++++..++|.++.++|++.+.+.
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 335678888888777776 8999999999999999999999999999754
No 14
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=95.77 E-value=0.0036 Score=40.48 Aligned_cols=52 Identities=21% Similarity=0.373 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 9 FFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 9 F~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
.+-.++-+..++++++-..++.. ++++++++++++.+++|+.++++|+++-+
T Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 65 ALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred ehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44455566667777776666655 88899999999999999999999998754
No 15
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.53 E-value=0.0007 Score=49.99 Aligned_cols=49 Identities=12% Similarity=0.056 Sum_probs=43.6
Q ss_pred HHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHH
Q 034170 11 MVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLF 59 (102)
Q Consensus 11 lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y 59 (102)
..++..++++++++++.+++. +|+++||+++++..++|..+.+.|+.+|
T Consensus 165 ~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 165 GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 345677889999999999888 8999999999999999999999998876
No 16
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=95.42 E-value=0.0033 Score=48.36 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHH
Q 034170 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 63 (102)
Q Consensus 2 ~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k 63 (102)
.+++++=.+.|...|..+.+..|.|++|.. +++++++.+++..+|+++++.++|+++.....
T Consensus 21 ~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 21 AVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 578899999999999999999999999999 89999999999999999999999999877643
No 17
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=95.34 E-value=0.0069 Score=41.48 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=26.1
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLF 59 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y 59 (102)
+|+++|||++|+.+++|+.+.++|+++-
T Consensus 80 ~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 80 AAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999753
No 18
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=95.09 E-value=0.024 Score=42.01 Aligned_cols=15 Identities=33% Similarity=0.393 Sum_probs=10.1
Q ss_pred ceeecccccccCCCC
Q 034170 88 KYVILEEIDDLDEGT 102 (102)
Q Consensus 88 ~~~~l~~~~~~~~~~ 102 (102)
..++|+|+|||||.|
T Consensus 140 Em~pL~~ddedeD~T 154 (163)
T PF06679_consen 140 EMAPLEEDDEDEDST 154 (163)
T ss_pred eecccCCCccccccc
Confidence 447787777777755
No 19
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=95.01 E-value=0.011 Score=44.28 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHH
Q 034170 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSL 58 (102)
Q Consensus 3 ~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~ 58 (102)
+.|++.+.-.++-|.-++++++-+-++.. ++.++++|+++...++|+.++++|+++
T Consensus 75 ~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l 139 (256)
T TIGR00688 75 LCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS 139 (256)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34555555567777778888777766665 888999999999999999999999864
No 20
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=94.73 E-value=0.015 Score=47.04 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=47.2
Q ss_pred chhHHHHHHHHHHHHHHhccccchhheece---------eeeee------ecCccccchhhhhhHHHHHHHHHH
Q 034170 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFY------FHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 2 ~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~i------fgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
.+.|++++..+...|.-++.|||-.-++.. +++++ ++++++..+++|++++++|+++-.
T Consensus 82 ~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~ 155 (358)
T PLN00411 82 GLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI 155 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 345666655666788888999998888777 66666 699999999999999999997644
No 21
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=94.48 E-value=0.043 Score=42.27 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=42.0
Q ss_pred HHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHH
Q 034170 12 VSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 12 nls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~ 66 (102)
.++-+..+++.+|-+.++.. ++++++||++++.+++|+++.+.|+.....--...
T Consensus 227 ~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~ 290 (296)
T PRK15430 227 LLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYT 290 (296)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777766666 89999999999999999999988887666544333
No 22
>PRK11689 aromatic amino acid exporter; Provisional
Probab=94.33 E-value=0.03 Score=43.10 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=42.0
Q ss_pred HHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHH
Q 034170 12 VSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 12 nls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~ 61 (102)
-+..+..+++.+|...++.. ++++++||++++..++|.++.+.|+++-..
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 44456788899988887776 889999999999999999999999866643
No 23
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=94.20 E-value=0.03 Score=37.51 Aligned_cols=58 Identities=24% Similarity=0.454 Sum_probs=40.0
Q ss_pred HHHHH-HHHHHHHHHhccccchhheece--------eeeeeecCccccchhhhhhHHHHHHHHHHHH
Q 034170 5 GALAF-FMVSTEFVLVSVTSAVTVQIAA--------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 62 (102)
Q Consensus 5 g~lAF-~lnls~F~lI~~TSaLT~sV~G--------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~ 62 (102)
|++.+ .-++..+.-++.+++...-+.+ ++.++|+++++...++|+.++++|+++=++-
T Consensus 41 g~~~~~~~~~~~~~a~~~~~~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAPALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS 107 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 44444 3344444455555543332222 8999999999999999999999999877664
No 24
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.18 E-value=0.037 Score=44.46 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHH
Q 034170 5 GALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSL 58 (102)
Q Consensus 5 g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~ 58 (102)
|+.+-+=.++.|.-+...+|||-||.- +|+++|+++++..+|+|-++.+.|...
T Consensus 248 ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 248 AIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 344444567788999999999999998 899999999999999999998888754
No 25
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=94.16 E-value=0.027 Score=43.39 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHH
Q 034170 4 GGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLF 59 (102)
Q Consensus 4 ~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y 59 (102)
+++..+..+++.|.-++++++-.-++.. +++++++|+++...++|++++++|+++-
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li 143 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ 143 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 3444445577778888888877776666 7888899999999999999999998764
No 26
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=94.12 E-value=0.02 Score=40.23 Aligned_cols=30 Identities=27% Similarity=0.508 Sum_probs=27.8
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~ 61 (102)
+++++|+|++++.+++|+.+.++|++.-+.
T Consensus 74 ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 74 FSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999988654
No 27
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.12 E-value=0.012 Score=47.91 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=47.1
Q ss_pred HHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHH
Q 034170 13 STEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 13 ls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~ 66 (102)
+..|.-|.+..|||+...- +|+++||.++++.+++|+.+.+.|+.+=.+.|.++
T Consensus 256 ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~ 318 (327)
T KOG1581|consen 256 LFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK 318 (327)
T ss_pred heehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence 3456778999999998777 99999999999999999999999999888887773
No 28
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=93.90 E-value=0.021 Score=44.82 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=27.6
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHhhCCCCCC
Q 034170 41 FTWLKGFGLFTILVGVSLFNWYKYQKLQAGHANED 75 (102)
Q Consensus 41 ~t~~n~~G~~I~i~G~~~Y~~~k~~~~~~~~~~~~ 75 (102)
..++|++|++++++|..+|...|..++++.++.+.
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~ 148 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEE 148 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeecCCCCCccccccc
Confidence 46889999999999999999998877544433333
No 29
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=93.35 E-value=0.047 Score=40.30 Aligned_cols=52 Identities=13% Similarity=-0.021 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 9 FFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 9 F~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
.+.+++.|.-++++++-.-++.- ++.++++|++++.+++|+.++++|+++..
T Consensus 58 ~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 58 GVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 44446666777776654443333 78888999999999999999999998865
No 30
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=93.22 E-value=0.045 Score=41.94 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHH
Q 034170 4 GGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSL 58 (102)
Q Consensus 4 ~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~ 58 (102)
.|++..+....++.-++++|+-..++.- ++.++++++++...++|+.++++|+++
T Consensus 71 ~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l 134 (302)
T TIGR00817 71 VAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVAL 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhh
Confidence 4555555566777888888887777766 778888999998888888888888864
No 31
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=93.21 E-value=0.043 Score=44.40 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHH-----Hhccccchhheece-------eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 5 GALAFFMVSTEFV-----LVSVTSAVTVQIAA-------VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 5 g~lAF~lnls~F~-----lI~~TSaLT~sV~G-------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
+.++|++...-|. +++.+|+-.+++.= +-+..||-++.|+=++..+.++.|.+.|+
T Consensus 231 ~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 231 LYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLIRTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred HHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHHHHHhcchhhhhHHHHHHHHHhhEEee
Confidence 4455555443332 56666666555543 55578999999999999999999999994
No 32
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=93.03 E-value=0.066 Score=41.23 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHH
Q 034170 17 VLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 63 (102)
Q Consensus 17 ~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k 63 (102)
..+++..|-+.++.. ++++++||++++..++|.++.++|+.+=.+-+
T Consensus 234 ~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 234 TLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 345666665555544 88999999999999999999999997655433
No 33
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=92.93 E-value=0.082 Score=36.47 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=28.0
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~ 61 (102)
+++++|+|++++.+++|+++.++|++.-+.
T Consensus 74 ~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 74 LSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998754
No 34
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=92.73 E-value=0.081 Score=40.31 Aligned_cols=46 Identities=11% Similarity=0.294 Sum_probs=34.0
Q ss_pred HHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHH
Q 034170 13 STEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSL 58 (102)
Q Consensus 13 ls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~ 58 (102)
+.-+..+++..+-+.+... ++++++||++++..++|..+.++|+++
T Consensus 226 ~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 226 ALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 3444556665554433332 888999999999999999999999875
No 35
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=92.70 E-value=0.078 Score=40.40 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 4 GGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 4 ~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
+|+....-.++.+.-.+++++-.-++.. +++++|+|+++..+++|+.++++|+++-.
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 69 SAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3444444444445445554433332221 78899999999999999999999997644
No 36
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=92.34 E-value=0.057 Score=39.81 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=38.9
Q ss_pred HHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHH
Q 034170 13 STEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVS 57 (102)
Q Consensus 13 ls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~ 57 (102)
+.-+..+++.++-+.++.. +++++++|++++..++|..+.+.|++
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 3456678999998888877 88999999999999999999999863
No 37
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=92.00 E-value=0.13 Score=39.48 Aligned_cols=49 Identities=12% Similarity=0.008 Sum_probs=40.4
Q ss_pred HHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHH
Q 034170 14 TEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 62 (102)
Q Consensus 14 s~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~ 62 (102)
.-+..+++.++-+.++.. ++++++||++|+..++|..+.+.|+.+-++.
T Consensus 229 l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 229 AYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 445566777776666666 8899999999999999999999999887763
No 38
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=91.36 E-value=0.1 Score=42.36 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHH
Q 034170 5 GALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 62 (102)
Q Consensus 5 g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~ 62 (102)
|++=+.-|+......++||..+.++.. +|+++.+++.++.+++|+.+|++|+++=.+.
T Consensus 86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 455566677778888899988888777 8999999999999999999999998875543
No 39
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=91.08 E-value=0.17 Score=35.02 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=26.7
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
+++++|+|++++.+++|+.+.+.|++.-+
T Consensus 79 ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 79 AGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999998643
No 40
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=91.03 E-value=0.079 Score=37.38 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=24.6
Q ss_pred eeecCccccchhhhhhHHHHHHHHHHH
Q 034170 35 FYFHDEFTWLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 35 ~ifgd~~t~~n~~G~~I~i~G~~~Y~~ 61 (102)
++|||++|+.+++|+.+.++|+++-+.
T Consensus 96 ~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 96 PWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 379999999999999999999998764
No 41
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=90.08 E-value=0.25 Score=34.41 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=28.0
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~ 61 (102)
+++++|+|++++.+++|+.+.++|++.-+.
T Consensus 74 ~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 74 VGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999999987664
No 42
>PRK11431 multidrug efflux system protein; Provisional
Probab=89.54 E-value=0.26 Score=33.77 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=27.2
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
+++++|+|++++.+++|+.+.++|++.-+
T Consensus 73 ig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 73 TGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999998754
No 43
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=89.27 E-value=0.19 Score=40.05 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=17.3
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSL 58 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~ 58 (102)
++.++++++.+...++|+.++++|+++
T Consensus 157 ls~~~l~ek~s~~~~l~l~l~v~Gv~l 183 (350)
T PTZ00343 157 LSILFLKQFLNLYAYLSLIPIVGGVAL 183 (350)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHh
Confidence 556666666666666666666666653
No 44
>COG2510 Predicted membrane protein [Function unknown]
Probab=87.24 E-value=0.33 Score=35.36 Aligned_cols=27 Identities=15% Similarity=0.499 Sum_probs=25.3
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSL 58 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~ 58 (102)
+|++++||++|..+++|+.+..+|.++
T Consensus 110 ls~lfL~E~ls~~~~iG~~LI~~Gail 136 (140)
T COG2510 110 LSILFLGERLSLPTWIGIVLIVIGAIL 136 (140)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence 889999999999999999999999865
No 45
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=85.38 E-value=0.36 Score=37.39 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=31.4
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKL 67 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~~ 67 (102)
+++++++.+.+..++++..+..+|++.....+..++
T Consensus 107 ~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 107 LGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred HHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 678889999999999999999999999998765543
No 46
>PRK11689 aromatic amino acid exporter; Provisional
Probab=83.83 E-value=0.52 Score=36.25 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=24.2
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
+++++++|+++...++|++++++|+++-.
T Consensus 108 l~~~~~~e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 108 FAVLFNGQKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence 67777899999999999999999986543
No 47
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=81.90 E-value=0.74 Score=37.19 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=35.2
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHHHhhC
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAG 70 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~~~~~ 70 (102)
+++++|||+++..+.+.++..-+|.++|.+-..+++++.
T Consensus 254 lav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~ 292 (293)
T COG2962 254 LAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKK 292 (293)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999999999887766553
No 48
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=81.35 E-value=0.86 Score=33.22 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=35.5
Q ss_pred HHHHHHHHHhccccchhheece---------eee-eeecCccccchhhhhhHHHHHHHHHHH
Q 034170 10 FMVSTEFVLVSVTSAVTVQIAA---------VAV-FYFHDEFTWLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 10 ~lnls~F~lI~~TSaLT~sV~G---------lsv-~ifgd~~t~~n~~G~~I~i~G~~~Y~~ 61 (102)
.-.++-|..++++++-.-.+.. ++. ++++++++...+.|+.+.+.|+++-..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~ 143 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILL 143 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheec
Confidence 3334444446666555444443 554 556999999999999999999987665
No 49
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=80.31 E-value=1 Score=34.60 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=24.4
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
+++++++++++...++|++++++|+++-.
T Consensus 103 l~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 103 LGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 77888999999999999999999986543
No 50
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=80.00 E-value=1.1 Score=32.58 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=37.6
Q ss_pred HHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHH
Q 034170 14 TEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 62 (102)
Q Consensus 14 s~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~ 62 (102)
..+..+++.++...+... +++++++++++...++|..+.+.|+.+.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 334455666665554433 5899999999999999999999999998864
No 51
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=78.89 E-value=1.1 Score=37.00 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 2 ~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
.+++++=.+.|.-.|....+-+|.|++|.. +++++.+.+++..||.-+++.++|+..=.
T Consensus 96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 356777788898999999999999999999 88889999999999999999999998765
No 52
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=77.61 E-value=1.5 Score=33.94 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=27.0
Q ss_pred eeeeeecCccccchh----hhhhHHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKG----FGLFTILVGVSLFNW 61 (102)
Q Consensus 32 lsv~ifgd~~t~~n~----~G~~I~i~G~~~Y~~ 61 (102)
.++++|||+.++.|+ +|+++.+.|+.+=..
T Consensus 255 ~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 255 GGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 889999999999999 999999999976543
No 53
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=77.61 E-value=7.6 Score=30.98 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHHHHHhccccchhheece---------------eeeeeecCcc----ccchhhhhhHHHHHHH-----
Q 034170 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAA---------------VAVFYFHDEF----TWLKGFGLFTILVGVS----- 57 (102)
Q Consensus 2 ~~~g~lAF~lnls~F~lI~~TSaLT~sV~G---------------lsv~ifgd~~----t~~n~~G~~I~i~G~~----- 57 (102)
+.+-++||+.|+.-|++.- -||.+.+| +-+.-|.|.+ ..+.|++.+++++|.+
T Consensus 164 ~~af~vAflFnwIGFllty---cl~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr~ 240 (262)
T KOG4812|consen 164 MWAFIVAFLFNWIGFLLTY---CLTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLRG 240 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhhHhhhhhhhhccchhhheeeEEeecccccccccccchHHHHHHHHHHHHHHHHH
Confidence 3567899999999998754 35566666 2223355543 2234666666666654
Q ss_pred HHHHHHHHHHhhC
Q 034170 58 LFNWYKYQKLQAG 70 (102)
Q Consensus 58 ~Y~~~k~~~~~~~ 70 (102)
.|+|+|.|++++.
T Consensus 241 ~i~YikVrrm~~~ 253 (262)
T KOG4812|consen 241 FINYIKVRRMEEK 253 (262)
T ss_pred HHhHHHHhhHHHH
Confidence 4677777766543
No 54
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=77.60 E-value=0.32 Score=39.94 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=41.6
Q ss_pred HHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHH
Q 034170 12 VSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 62 (102)
Q Consensus 12 nls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~ 62 (102)
|++-..+.+.-|+-|-+++- +++..+.+.+...++.|..+.+.|+++||-.
T Consensus 276 NfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 276 NFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred eehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777765 6666778899999999999999999999954
No 55
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=77.24 E-value=2.6 Score=27.30 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=15.8
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 034170 46 GFGLFTILVGVSLFNWYKY 64 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~k~ 64 (102)
.+|+.++++|.++|..++.
T Consensus 7 Li~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5788999999999998653
No 56
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=77.10 E-value=0.46 Score=39.91 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHHHH
Q 034170 5 GALAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 65 (102)
Q Consensus 5 g~lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~ 65 (102)
|.+=|+-|+..=..++.||+-..+|.+ ++..+-+|++|+.++++.+++++|+++-+..+.+
T Consensus 166 c~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 166 CPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence 455667777777778888888887777 6666668999999999999999999988875443
No 57
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=73.53 E-value=2.3 Score=32.62 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.1
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
++. +++|+++...++|+.++++|+++-.
T Consensus 113 la~-~~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 113 FSR-LFGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHH-HhcccCchhHHHHHHHHHHhHHHHh
Confidence 555 4799999999999999999987653
No 58
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=72.25 E-value=1.5 Score=28.79 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=10.6
Q ss_pred eeeeeecCccccchhhhhhH
Q 034170 32 VAVFYFHDEFTWLKGFGLFT 51 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I 51 (102)
+++++|||++|+.+++|+.+
T Consensus 73 ~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 73 VGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHH--------HHHHHH
T ss_pred HHHHHhCCCCCHHHHhheee
Confidence 88999999999999999876
No 59
>PHA03049 IMV membrane protein; Provisional
Probab=71.03 E-value=3.8 Score=26.52 Aligned_cols=18 Identities=11% Similarity=0.425 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 034170 46 GFGLFTILVGVSLFNWYK 63 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~k 63 (102)
.+++.++++|.+.|..++
T Consensus 7 l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578889999999999765
No 60
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=69.29 E-value=6.3 Score=27.53 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=15.1
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSL 58 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~ 58 (102)
+|.+.++. -...-+.|..+...|++.
T Consensus 77 ~G~l~~~~-~~~~~i~g~~~~~~G~~~ 102 (136)
T PF08507_consen 77 LGTLCLGQ-SILSIIIGLLLFLVGVIY 102 (136)
T ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHH
Confidence 45555555 223356677778888653
No 61
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=69.03 E-value=5 Score=28.35 Aligned_cols=57 Identities=28% Similarity=0.415 Sum_probs=41.3
Q ss_pred chhHHHHHHHHHHHHHHhccccchhheece-------------eeeee-ecCccccchhhhhhHHHHHHHH
Q 034170 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAA-------------VAVFY-FHDEFTWLKGFGLFTILVGVSL 58 (102)
Q Consensus 2 ~~~g~lAF~lnls~F~lI~~TSaLT~sV~G-------------lsv~i-fgd~~t~~n~~G~~I~i~G~~~ 58 (102)
.++|+++-+...+....+.+-++.+..+.. .+++= -..++++.+++|+.+.++|+++
T Consensus 68 ~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 68 YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 467888888888888888877766555444 22221 1247899999999999999863
No 62
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=63.54 E-value=2.2 Score=34.95 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=26.9
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
+++.+.+++.|..+.+|..+++.|+++-.
T Consensus 140 faw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 140 FAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred HHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 88889999999999999999999998765
No 63
>PF14851 FAM176: FAM176 family
Probab=62.91 E-value=7.8 Score=28.52 Aligned_cols=17 Identities=18% Similarity=-0.002 Sum_probs=11.5
Q ss_pred hhhhhHHHHHHHHHHHH
Q 034170 46 GFGLFTILVGVSLFNWY 62 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~ 62 (102)
++|++++++=++.---.
T Consensus 31 C~GLlLtLcllV~risc 47 (153)
T PF14851_consen 31 CAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHhhhee
Confidence 67888888777554444
No 64
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=62.91 E-value=12 Score=20.99 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 034170 48 GLFTILVGVSLFNWYKYQKLQA 69 (102)
Q Consensus 48 G~~I~i~G~~~Y~~~k~~~~~~ 69 (102)
-+.++++|..+|.+-||+++-.
T Consensus 5 ~i~L~l~ga~f~~fKKyQ~~vn 26 (33)
T PF10855_consen 5 AIILILGGAAFYGFKKYQNHVN 26 (33)
T ss_pred eehhhhhhHHHHHHHHHHHHHh
Confidence 3568889999999988886543
No 65
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=58.98 E-value=3.7 Score=31.81 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=28.0
Q ss_pred eeeeeecCccccch----hhhhhHHHHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLK----GFGLFTILVGVSLFNWYK 63 (102)
Q Consensus 32 lsv~ifgd~~t~~n----~~G~~I~i~G~~~Y~~~k 63 (102)
.++++|||+.+..+ ++|++++++|+++....|
T Consensus 103 ~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 103 FGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 78888999999988 999999999998876543
No 66
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=56.33 E-value=9.5 Score=25.46 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.3
Q ss_pred ccccchhhhhhHHHHHHHHHHH
Q 034170 40 EFTWLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 40 ~~t~~n~~G~~I~i~G~~~Y~~ 61 (102)
.+++.+++|+.+.++|..+|..
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~l 25 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFL 25 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999964
No 67
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=56.02 E-value=17 Score=21.29 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=19.4
Q ss_pred ecCccccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 034170 37 FHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQA 69 (102)
Q Consensus 37 fgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~~~~ 69 (102)
|++++.....+.++.+++=.++|.++=.+++++
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~~k~~~ 39 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFIRKMKE 39 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 778887777777776654444444333344333
No 68
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=50.18 E-value=20 Score=26.96 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHh
Q 034170 46 GFGLFTILVGVSLFNWYKYQKLQ 68 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~k~~~~~ 68 (102)
..|++++|-.++.|||++.+-.+
T Consensus 171 A~GL~VAIPAli~yn~f~~ri~~ 193 (211)
T TIGR02797 171 AIGLVAAIPAVVIYNVFARSIAG 193 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999877543
No 69
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.86 E-value=20 Score=25.41 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=4.8
Q ss_pred hhhhhHHHHHH
Q 034170 46 GFGLFTILVGV 56 (102)
Q Consensus 46 ~~G~~I~i~G~ 56 (102)
++|.+..++|+
T Consensus 70 i~gv~aGvIg~ 80 (122)
T PF01102_consen 70 IFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 34444444444
No 70
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=48.79 E-value=23 Score=24.50 Aligned_cols=25 Identities=16% Similarity=0.446 Sum_probs=20.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhh
Q 034170 45 KGFGLFTILVGVSLFNWYKYQKLQA 69 (102)
Q Consensus 45 n~~G~~I~i~G~~~Y~~~k~~~~~~ 69 (102)
-..|+++++....+|++++.+..+.
T Consensus 106 T~~GL~vai~~~~~~~~l~~~~~~~ 130 (139)
T PF01618_consen 106 TAYGLVVAIPALPFYNYLKRRVERI 130 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999998876543
No 71
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=47.80 E-value=4.7 Score=31.04 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCC
Q 034170 49 LFTILVGVSLFNWYKYQKLQAGHA 72 (102)
Q Consensus 49 ~~I~i~G~~~Y~~~k~~~~~~~~~ 72 (102)
++|+++|...|-|+|.+++|+.+.
T Consensus 167 llv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 167 LLVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHHHhhcceEEEEEEeccccccc
Confidence 334445556666777766544433
No 72
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=47.74 E-value=7.8 Score=32.03 Aligned_cols=35 Identities=14% Similarity=0.339 Sum_probs=30.7
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~ 66 (102)
+|+++|+-++|..=.+|..+++..+.+|+..++++
T Consensus 293 ~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 293 ASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 77788888999999999999999999999666655
No 73
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=47.44 E-value=23 Score=27.13 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHh
Q 034170 45 KGFGLFTILVGVSLFNWYKYQKLQ 68 (102)
Q Consensus 45 n~~G~~I~i~G~~~Y~~~k~~~~~ 68 (102)
-..|++++|-.++.|||+..+-.+
T Consensus 175 Ta~GL~vAIPAli~yN~f~~ri~~ 198 (227)
T PRK10801 175 TAIGLFAAIPAVMAYNRLNQRVNK 198 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999876544
No 74
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.70 E-value=11 Score=23.76 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHH
Q 034170 47 FGLFTILVGVSLFNWYK 63 (102)
Q Consensus 47 ~G~~I~i~G~~~Y~~~k 63 (102)
+=+.+++.|+++|-+-+
T Consensus 16 ~~~~l~fiavi~~ayr~ 32 (60)
T COG4736 16 IAFTLFFIAVIYFAYRP 32 (60)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34567777887777644
No 75
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=46.55 E-value=22 Score=23.02 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=18.8
Q ss_pred Cccccchhh--h----hhHHHHHHHHHHHHHHHHHhhCCC
Q 034170 39 DEFTWLKGF--G----LFTILVGVSLFNWYKYQKLQAGHA 72 (102)
Q Consensus 39 d~~t~~n~~--G----~~I~i~G~~~Y~~~k~~~~~~~~~ 72 (102)
|.+++.+|. | +++.+.+.+.=-|+|.++.++..+
T Consensus 26 d~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~a 65 (68)
T PF04971_consen 26 DQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKAA 65 (68)
T ss_pred hccCcccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhHhh
Confidence 566655443 4 444444444445777777665543
No 76
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=44.76 E-value=27 Score=26.35 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHh
Q 034170 46 GFGLFTILVGVSLFNWYKYQKLQ 68 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~k~~~~~ 68 (102)
..|++++|-.++.|||++.+-.+
T Consensus 175 a~GL~vAIPali~yn~f~~~i~~ 197 (215)
T TIGR02796 175 AIGLFAAIPAVIAYNKLSTQVNK 197 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999876543
No 77
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=43.88 E-value=28 Score=26.25 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 034170 45 KGFGLFTILVGVSLFNWYKYQKL 67 (102)
Q Consensus 45 n~~G~~I~i~G~~~Y~~~k~~~~ 67 (102)
-.+|+++++-.++.||+++.+-.
T Consensus 170 TA~GL~vAIPAvi~yn~l~r~~~ 192 (216)
T COG0811 170 TAIGLFVAIPAVVAYNVLRRKVE 192 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999987654
No 78
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=41.74 E-value=31 Score=26.82 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 034170 46 GFGLFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~k~~~ 66 (102)
..|++++|-+++.|||+..+-
T Consensus 182 a~GL~vAIPAliayn~f~~ri 202 (244)
T PRK10414 182 AIGLVAAIPAVVIYNVFARQI 202 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999998755
No 79
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=39.38 E-value=14 Score=25.81 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=21.5
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSL 58 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~ 58 (102)
.++++.++..+..-++|+.+.++|+.+
T Consensus 85 ~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 85 TGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHhcCcccchhHHHHHHHHHcCeee
Confidence 566666677788889999999999853
No 80
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=38.77 E-value=17 Score=27.93 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=21.4
Q ss_pred cchhhhhhHHHHHH-HHHHHHHHHHHhhCCCCCCC
Q 034170 43 WLKGFGLFTILVGV-SLFNWYKYQKLQAGHANEDG 76 (102)
Q Consensus 43 ~~n~~G~~I~i~G~-~~Y~~~k~~~~~~~~~~~~~ 76 (102)
..|.+|+.+.+.|+ +.|.. ...+-|++++|+++
T Consensus 175 l~N~~gl~~~~fg~~V~~~~-~~~~~kr~~~~~~~ 208 (214)
T cd08764 175 LGNFIGIVLVIFGGLVVYLV-TEPDYKRIELPEEE 208 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCcccCCCCCchhh
Confidence 46999999999998 44544 34444445555444
No 81
>PF04713 Pox_I5: Poxvirus protein I5; InterPro: IPR006803 This entry represents the Poxvirus protein I5.
Probab=38.21 E-value=22 Score=23.51 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhccccchhheeceeeeeeecCccccchhhhhhHHHHHH-HHHH-HHH
Q 034170 6 ALAFFMVSTEFVLVSVTSAVTVQIAAVAVFYFHDEFTWLKGFGLFTILVGV-SLFN-WYK 63 (102)
Q Consensus 6 ~lAF~lnls~F~lI~~TSaLT~sV~Glsv~ifgd~~t~~n~~G~~I~i~G~-~~Y~-~~k 63 (102)
+++.+|-+|-+.++-+..|= +.+.+..-..|+..++...++|+.+.+=|. ++|. |.|
T Consensus 15 lL~llMvisG~ali~k~~ap-~~~v~~rS~~~~rVl~~le~vailifIPGTIiLY~aYIk 73 (77)
T PF04713_consen 15 LLMLLMVISGGALIFKRIAP-HRSVMMRSATFNRVLTFLEYVAILIFIPGTIILYSAYIK 73 (77)
T ss_pred HHHHHHHHhChHHHhhccCC-cceehhhhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 56677777777766665554 777777777788899999999999999998 5665 443
No 82
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=37.80 E-value=8.4 Score=31.73 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhccccchhheece---------eeeeeecCccccchhhhhhHHHHHHHHHHHHH
Q 034170 7 LAFFMVSTEFVLVSVTSAVTVQIAA---------VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 63 (102)
Q Consensus 7 lAF~lnls~F~lI~~TSaLT~sV~G---------lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k 63 (102)
.+|+=..+...+|+...|++-.-.- +|.++|..|+|..-.-|..+.+.|+.+=-|-|
T Consensus 269 ~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 269 AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 3333344444556655555443332 89999999999999999999999997755544
No 83
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=36.60 E-value=46 Score=24.15 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=20.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHh
Q 034170 45 KGFGLFTILVGVSLFNWYKYQKLQ 68 (102)
Q Consensus 45 n~~G~~I~i~G~~~Y~~~k~~~~~ 68 (102)
-..|+.+++-+.+.||+++.+-.+
T Consensus 106 Ta~GL~VAIpali~yn~l~~rv~~ 129 (138)
T TIGR02805 106 TALGLLVAIPSLVFYNALLRKVEV 129 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999998776543
No 84
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=36.53 E-value=49 Score=23.83 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh
Q 034170 47 FGLFTILVGVSLFNWYKYQKLQ 68 (102)
Q Consensus 47 ~G~~I~i~G~~~Y~~~k~~~~~ 68 (102)
+|++.+-+|.+.+.+.|.+++|
T Consensus 12 ~aLaAAG~G~AA~~~~krk~kK 33 (137)
T PF12868_consen 12 AALAAAGAGYAAHKYKKRKEKK 33 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4444555565665555444433
No 85
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=35.88 E-value=60 Score=25.47 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 034170 3 SGGALAFFMVSTEFVL 18 (102)
Q Consensus 3 ~~g~lAF~lnls~F~l 18 (102)
.+.+++|+.|+.-|++
T Consensus 92 ~n~~vs~~Fq~iGFll 107 (233)
T PF10176_consen 92 WNFLVSFSFQWIGFLL 107 (233)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666664
No 86
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=35.30 E-value=27 Score=20.30 Aligned_cols=18 Identities=11% Similarity=0.473 Sum_probs=12.6
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 034170 47 FGLFTILVGVSLFNWYKY 64 (102)
Q Consensus 47 ~G~~I~i~G~~~Y~~~k~ 64 (102)
+=++++++|+++|.+-+.
T Consensus 16 v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 445667788888888544
No 87
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=35.25 E-value=19 Score=22.54 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.3
Q ss_pred hhhhHH
Q 034170 47 FGLFTI 52 (102)
Q Consensus 47 ~G~~I~ 52 (102)
+|+.+.
T Consensus 10 ~Gm~iV 15 (79)
T PF04277_consen 10 IGMGIV 15 (79)
T ss_pred HHHHHH
Confidence 344333
No 88
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=34.06 E-value=31 Score=26.83 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=17.9
Q ss_pred cccchhhhhhHHHHHHHHHHH
Q 034170 41 FTWLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 41 ~t~~n~~G~~I~i~G~~~Y~~ 61 (102)
+|..|++++.+.++|+++..+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~ 255 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIY 255 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999977654
No 89
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=33.92 E-value=32 Score=27.71 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHhcccc
Q 034170 4 GGALAFFMVSTEFVLVSVTS 23 (102)
Q Consensus 4 ~g~lAF~lnls~F~lI~~TS 23 (102)
=.+.||++|+-+|+++.++.
T Consensus 116 LtLAAFAl~YGeFwlLaq~~ 135 (286)
T PF14576_consen 116 LTLAAFALEYGEFWLLAQIY 135 (286)
T ss_pred HHHHHHHHHhhhHHHHhhhc
Confidence 35789999999999988763
No 90
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=33.80 E-value=57 Score=19.80 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHHHHH
Q 034170 47 FGLFTILVGVSLFNWY 62 (102)
Q Consensus 47 ~G~~I~i~G~~~Y~~~ 62 (102)
+++.+.++++.++.+.
T Consensus 8 IpiSl~l~~~~l~~f~ 23 (51)
T TIGR00847 8 IPISLLLGGVGLVAFL 23 (51)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555543
No 91
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=31.59 E-value=38 Score=20.65 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=17.3
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHH
Q 034170 41 FTWLKGFGLFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 41 ~t~~n~~G~~I~i~G~~~Y~~~k~~~ 66 (102)
.+...++|..+...|.+.|+...+..
T Consensus 16 ~tV~~Lig~T~~~g~~~~~~~y~~~~ 41 (59)
T PF14880_consen 16 TTVLGLIGFTVYGGGLTVYTVYSYFK 41 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778777777777776555433
No 92
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=31.13 E-value=26 Score=29.15 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=6.1
Q ss_pred eecccccccCCC
Q 034170 90 VILEEIDDLDEG 101 (102)
Q Consensus 90 ~~l~~~~~~~~~ 101 (102)
..-+|.+||||+
T Consensus 363 ~~~~~~~~~~~~ 374 (374)
T PF01528_consen 363 ARRSDIDDEEES 374 (374)
T ss_pred CccccccccccC
Confidence 334555566553
No 93
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=29.44 E-value=45 Score=25.58 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=16.2
Q ss_pred chhhh--hhHHHHHHHHHHHHHHHH
Q 034170 44 LKGFG--LFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 44 ~n~~G--~~I~i~G~~~Y~~~k~~~ 66 (102)
+=..| +.++++|...|...+.+.
T Consensus 105 lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 105 LVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred hHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 34678 888888888777655444
No 94
>PF13994 PgaD: PgaD-like protein
Probab=28.32 E-value=74 Score=22.28 Aligned_cols=19 Identities=5% Similarity=0.146 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhCCCCC
Q 034170 56 VSLFNWYKYQKLQAGHANE 74 (102)
Q Consensus 56 ~~~Y~~~k~~~~~~~~~~~ 74 (102)
=+.||+.|.+.+++.+.+.
T Consensus 81 Wa~yn~~Rf~~~~rr~~~~ 99 (138)
T PF13994_consen 81 WAKYNRLRFRGRRRRRRPP 99 (138)
T ss_pred HHHHHHHHhcchhhccCCC
Confidence 3456666666555554433
No 95
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=27.57 E-value=22 Score=28.82 Aligned_cols=30 Identities=13% Similarity=0.381 Sum_probs=26.8
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~ 61 (102)
++.++++|+++..+++-+.++.+|+..-.+
T Consensus 115 lG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 115 LGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999976544
No 96
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.44 E-value=43 Score=24.54 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHhccccchhheec---e----------eeeeeec-CccccchhhhhhHHHHHHHHHH
Q 034170 3 SGGALAFFMVSTEFVLVSVTSAVTVQIA---A----------VAVFYFH-DEFTWLKGFGLFTILVGVSLFN 60 (102)
Q Consensus 3 ~~g~lAF~lnls~F~lI~~TSaLT~sV~---G----------lsv~ifg-d~~t~~n~~G~~I~i~G~~~Y~ 60 (102)
++|+++-+.-.++-++..+-.+.+..++ | .+++=.. .+++...++|+.+.++|+++-.
T Consensus 74 ~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 74 IGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred HccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 4667776666666666666666555443 3 2322222 3689999999999999966544
No 97
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=26.56 E-value=56 Score=20.51 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.2
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 034170 45 KGFGLFTILVGVSLFNWY 62 (102)
Q Consensus 45 n~~G~~I~i~G~~~Y~~~ 62 (102)
-++|-++.++|.++|-.+
T Consensus 9 ~~~ggfVg~iG~a~Ypi~ 26 (58)
T PF15061_consen 9 LFVGGFVGLIGAALYPIY 26 (58)
T ss_pred hhHHHHHHHHHHHHhhhh
Confidence 368999999999999854
No 98
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=26.01 E-value=1.7e+02 Score=18.46 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=6.0
Q ss_pred hHHHHHHHHHH
Q 034170 50 FTILVGVSLFN 60 (102)
Q Consensus 50 ~I~i~G~~~Y~ 60 (102)
++.++|-++|.
T Consensus 18 fiIlfgRl~Y~ 28 (59)
T PF11119_consen 18 FIILFGRLIYS 28 (59)
T ss_pred HHHHHHHHHHH
Confidence 45666744443
No 99
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=25.61 E-value=60 Score=23.87 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=4.9
Q ss_pred eecccccccCC
Q 034170 90 VILEEIDDLDE 100 (102)
Q Consensus 90 ~~l~~~~~~~~ 100 (102)
+..||.|+|.|
T Consensus 36 ~~~deldEEfD 46 (156)
T PF08372_consen 36 AHPDELDEEFD 46 (156)
T ss_pred CCcchhhhhhc
Confidence 33455444443
No 100
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=25.55 E-value=1.4e+02 Score=18.32 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=18.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhCC
Q 034170 44 LKGFGLFTILVGVSLFNWYKYQKLQAGH 71 (102)
Q Consensus 44 ~n~~G~~I~i~G~~~Y~~~k~~~~~~~~ 71 (102)
.|..-+.+.++|++.=|.+=.+...+-+
T Consensus 3 ~~~wlIIviVlgvIigNia~LK~sAk~K 30 (55)
T PF11446_consen 3 WNPWLIIVIVLGVIIGNIAALKYSAKMK 30 (55)
T ss_pred chhhHHHHHHHHHHHhHHHHHHHhcccC
Confidence 4566677888888888866555544433
No 101
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=25.07 E-value=42 Score=25.92 Aligned_cols=18 Identities=11% Similarity=0.477 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 034170 46 GFGLFTILVGVSLFNWYK 63 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~k 63 (102)
.+|+++.++.++.|+.+-
T Consensus 19 aI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 19 AIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHhhhhee
Confidence 478999999999999876
No 102
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=24.89 E-value=24 Score=28.52 Aligned_cols=26 Identities=4% Similarity=0.014 Sum_probs=0.0
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHH
Q 034170 41 FTWLKGFGLFTILVGVSLFNWYKYQKL 67 (102)
Q Consensus 41 ~t~~n~~G~~I~i~G~~~Y~~~k~~~~ 67 (102)
+..-.++.+.++++|.+||-| |.+..
T Consensus 230 lLVPSiILVLLaVGGLLfYr~-rrRs~ 255 (285)
T PF05337_consen 230 LLVPSIILVLLAVGGLLFYRR-RRRSH 255 (285)
T ss_dssp ---------------------------
T ss_pred ccccchhhhhhhccceeeecc-ccccc
Confidence 455678999999999999988 44433
No 103
>PRK13664 hypothetical protein; Provisional
Probab=24.56 E-value=96 Score=19.66 Aligned_cols=19 Identities=32% Similarity=0.149 Sum_probs=11.6
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 034170 46 GFGLFTILVGVSLFNWYKYQ 65 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~k~~ 65 (102)
++=+.+.++|+++-.+ |--
T Consensus 9 Wilill~lvG~i~N~i-K~l 27 (62)
T PRK13664 9 WILVLVFLVGVLLNVI-KDL 27 (62)
T ss_pred HHHHHHHHHHHHHHHH-HHH
Confidence 3446677888876544 433
No 104
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.49 E-value=1.1e+02 Score=20.49 Aligned_cols=19 Identities=21% Similarity=0.551 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 034170 48 GLFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 48 G~~I~i~G~~~Y~~~k~~~ 66 (102)
|++..+++++.|-++|.++
T Consensus 9 ~~~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 9 GVGAVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555443
No 105
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=24.29 E-value=1e+02 Score=24.41 Aligned_cols=9 Identities=33% Similarity=0.638 Sum_probs=4.8
Q ss_pred ccccccCCC
Q 034170 93 EEIDDLDEG 101 (102)
Q Consensus 93 ~~~~~~~~~ 101 (102)
+|+||.+|+
T Consensus 258 ~~~ed~~~~ 266 (267)
T PRK09757 258 NEEEDYSNG 266 (267)
T ss_pred ccccccccC
Confidence 444556554
No 106
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=23.56 E-value=44 Score=19.76 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 034170 47 FGLFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 47 ~G~~I~i~G~~~Y~~~k~~~ 66 (102)
+-++++.+|+++|.+.+.++
T Consensus 17 ~~~~~~Figiv~wa~~p~~k 36 (48)
T cd01324 17 LYLALFFLGVVVWAFRPGRK 36 (48)
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 33578899999999875543
No 107
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=22.61 E-value=1e+02 Score=24.09 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCC
Q 034170 47 FGLFTILVGVSLFNWYKYQKLQAGHA 72 (102)
Q Consensus 47 ~G~~I~i~G~~~Y~~~k~~~~~~~~~ 72 (102)
+.+++...|+..|...|+|.+++...
T Consensus 42 ~~I~~~V~~~~~~~~~k~R~~~~~~~ 67 (247)
T COG1622 42 LVIVLPVIVLLVYFAWKYRASNNAAP 67 (247)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCC
Confidence 34677778899999999998776665
No 108
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=22.43 E-value=23 Score=24.86 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=23.1
Q ss_pred hhheece-eeeeeecCccccchhhhhhHHHHHH
Q 034170 25 VTVQIAA-VAVFYFHDEFTWLKGFGLFTILVGV 56 (102)
Q Consensus 25 LT~sV~G-lsv~ifgd~~t~~n~~G~~I~i~G~ 56 (102)
+|+.|.. .++++.++++++....|....++++
T Consensus 71 itL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av 103 (108)
T PF04342_consen 71 ITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAV 103 (108)
T ss_pred HhhheeHHHHHHHhCCCccHHHHHHHHHHHHhh
Confidence 3444444 7888899999998888877665553
No 109
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.38 E-value=33 Score=25.62 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=18.6
Q ss_pred eeeeeecCccc---cchhhhhhHHHHHH
Q 034170 32 VAVFYFHDEFT---WLKGFGLFTILVGV 56 (102)
Q Consensus 32 lsv~ifgd~~t---~~n~~G~~I~i~G~ 56 (102)
+.+..||++=+ ..|.+|.+++.+.+
T Consensus 36 llI~lFg~~~~~nf~~NllGVil~~~~~ 63 (165)
T PF11286_consen 36 LLIALFGGESGGNFHWNLLGVILGLLLT 63 (165)
T ss_pred HHHHHcCCCCCCceeeeHHHHHHHHHHH
Confidence 55667887543 56999999888776
No 110
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.26 E-value=67 Score=28.66 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=22.3
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHH
Q 034170 41 FTWLKGFGLFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 41 ~t~~n~~G~~I~i~G~~~Y~~~k~~~ 66 (102)
++.+|.+++++.+.|++.--+.|.-.
T Consensus 267 fSIiNSlvIVlfLSgiv~mI~lRtl~ 292 (628)
T KOG1278|consen 267 FSIINSLVIVLFLSGIVAMIMLRTLY 292 (628)
T ss_pred EehhhhHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999988877543
No 111
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=22.22 E-value=94 Score=25.63 Aligned_cols=33 Identities=9% Similarity=0.241 Sum_probs=19.4
Q ss_pred cchhhhhhHHHHHHHHHH-HHHHHHHhhCCCCCC
Q 034170 43 WLKGFGLFTILVGVSLFN-WYKYQKLQAGHANED 75 (102)
Q Consensus 43 ~~n~~G~~I~i~G~~~Y~-~~k~~~~~~~~~~~~ 75 (102)
..-.+++.+.+.+.+||- +++.+..++.+.|++
T Consensus 303 v~~~~vli~vl~~~~~~~~~~~~~~~~~~~~p~~ 336 (361)
T PF12259_consen 303 VCGAIVLIIVLISLAWLYRTFRRRQLRSAQNPVN 336 (361)
T ss_pred hhHHHHHHHHHHHHHhheeehHHHHhhhccCCcc
Confidence 345678888887886655 444444444555533
No 112
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.78 E-value=1.1e+02 Score=24.34 Aligned_cols=46 Identities=4% Similarity=-0.087 Sum_probs=27.3
Q ss_pred hhhhhhHHHH-HHHHHHHHHHHHHhhCCCCCCCCCCcccccccccee
Q 034170 45 KGFGLFTILV-GVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYV 90 (102)
Q Consensus 45 n~~G~~I~i~-G~~~Y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (102)
-++++++.+. +++.|++++...++..+.+..+.-|+..+.-+-.|.
T Consensus 188 ~~lligl~llllv~~~q~L~~~sKk~~~~~kVE~GTas~~~vd~eWi 234 (261)
T KOG1631|consen 188 YILLIGLSLLLLVLSQQFLSKLSKKTKKRRKVEVGTASKDAVDDEWI 234 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccceEeecccCccccccccc
Confidence 3455555444 447788888777666666666666666443333343
No 113
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=20.94 E-value=1e+02 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=19.2
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHH
Q 034170 41 FTWLKGFGLFTILVGVSLFNWYKYQ 65 (102)
Q Consensus 41 ~t~~n~~G~~I~i~G~~~Y~~~k~~ 65 (102)
++..|.+-+++.+.|++..-..|..
T Consensus 201 ~SiiNS~iivl~L~~~v~~Il~R~l 225 (521)
T PF02990_consen 201 FSIINSFIIVLFLSGLVAIILLRTL 225 (521)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888877776654
No 114
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=20.94 E-value=1e+02 Score=25.81 Aligned_cols=14 Identities=0% Similarity=0.029 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 034170 52 ILVGVSLFNWYKYQ 65 (102)
Q Consensus 52 ~i~G~~~Y~~~k~~ 65 (102)
.+.+.++|...|.+
T Consensus 450 ~~~~~~~y~~~~~~ 463 (507)
T TIGR00910 450 AALPFIIYALHDKK 463 (507)
T ss_pred HHHHHHHHHHhccc
Confidence 33555666554433
No 115
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=20.78 E-value=1.6e+02 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 034170 54 VGVSLFNWYKYQ 65 (102)
Q Consensus 54 ~G~~~Y~~~k~~ 65 (102)
+=.++|..+|..
T Consensus 94 ~~f~lY~l~Ki~ 105 (152)
T PF15361_consen 94 VLFILYTLFKIK 105 (152)
T ss_pred HHHHHHHHHHHH
Confidence 333555666655
No 116
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.72 E-value=1e+02 Score=21.72 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=18.2
Q ss_pred eeeeeecCccccchhhhhhHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGV 56 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~ 56 (102)
.|++..++++.+-...|....+.|+
T Consensus 86 Fsvfyl~epl~~~~l~a~~~i~gav 110 (116)
T COG3169 86 FSVFYLKEPLRWNYLWAFLLILGAV 110 (116)
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHH
Confidence 7777888888887777766555554
No 117
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=20.71 E-value=35 Score=23.67 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=11.7
Q ss_pred cCccccchhhhhhHHHHHHHHHHHH
Q 034170 38 HDEFTWLKGFGLFTILVGVSLFNWY 62 (102)
Q Consensus 38 gd~~t~~n~~G~~I~i~G~~~Y~~~ 62 (102)
.+.+|...+.|++| |+.+|+++
T Consensus 58 kN~is~a~i~alVi---aIY~YTfY 79 (108)
T KOG4782|consen 58 KNHISFAGIGALVI---AIYGYTFY 79 (108)
T ss_pred hhhhhhHHHHHHHH---Hhhhheee
Confidence 35566555555555 45555544
No 118
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=20.53 E-value=75 Score=25.02 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.5
Q ss_pred cCccc-cchhhhhhHHHHHHHHH
Q 034170 38 HDEFT-WLKGFGLFTILVGVSLF 59 (102)
Q Consensus 38 gd~~t-~~n~~G~~I~i~G~~~Y 59 (102)
+|.+= ..|.+|..+.++=.++|
T Consensus 182 ~D~~IaipN~iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 182 KDFFIAIPNVLGFLLGLIQLILY 204 (243)
T ss_pred cCeEEEcccHHHHHHHHHHHHHh
Confidence 46544 57999999999999999
No 119
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=20.52 E-value=59 Score=23.41 Aligned_cols=33 Identities=9% Similarity=0.254 Sum_probs=20.6
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 64 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~ 64 (102)
++.+=|+|++.-....++.+.-+++..|++.-|
T Consensus 50 ~~l~n~~~~~g~~~a~vftivaif~~~ya~~lY 82 (126)
T COG5264 50 FALYNSGDRLGMISAYVFTIVAIFCGFYALMLY 82 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556776655556666666667777765433
No 120
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=20.49 E-value=97 Score=25.99 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=12.1
Q ss_pred ccccceeec---ccccccCCC
Q 034170 84 NASAKYVIL---EEIDDLDEG 101 (102)
Q Consensus 84 ~~~~~~~~l---~~~~~~~~~ 101 (102)
+.+..|... +|.||.|||
T Consensus 164 ~~ge~~~~IQPaeDeDD~ddg 184 (410)
T KOG4715|consen 164 EKGEPYMSIQPAEDEDDYDDG 184 (410)
T ss_pred hcCCcceecccccCccccccc
Confidence 445556664 788888876
Done!