Query 034170
Match_columns 102
No_of_seqs 105 out of 577
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 18:00:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 96.7 0.00045 1.5E-08 48.3 1.5 30 32-61 74-103 (137)
2 3b5d_A Multidrug transporter E 94.4 0.018 6.1E-07 38.1 2.1 31 32-62 74-104 (110)
3 3l1l_A Arginine/agmatine antip 29.6 25 0.00085 26.4 1.9 22 45-66 410-431 (445)
4 2lat_A Dolichyl-diphosphooligo 23.7 48 0.0016 18.2 1.9 25 42-67 9-33 (37)
5 2jwa_A Receptor tyrosine-prote 20.2 61 0.0021 18.3 1.9 15 54-68 27-41 (44)
6 2l2t_A Receptor tyrosine-prote 20.0 43 0.0015 18.9 1.3 9 57-65 29-37 (44)
7 2jo1_A Phospholemman; FXYD1, N 19.3 1.3E+02 0.0043 18.8 3.4 14 47-60 23-36 (72)
8 2k21_A Potassium voltage-gated 16.4 1.3E+02 0.0045 20.9 3.3 25 46-70 59-83 (138)
9 2rdd_B UPF0092 membrane protei 15.9 90 0.0031 16.4 1.9 21 49-69 8-28 (37)
10 1rh5_B Preprotein translocase 15.1 83 0.0028 19.5 1.8 19 43-61 37-55 (74)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.74 E-value=0.00045 Score=48.28 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=22.4
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~ 61 (102)
+++++|||++|+.+++|+.+.++|+++.+.
T Consensus 74 ~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 74 LSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999875
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=94.45 E-value=0.018 Score=38.12 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=28.7
Q ss_pred eeeeeecCccccchhhhhhHHHHHHHHHHHH
Q 034170 32 VAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 62 (102)
Q Consensus 32 lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~ 62 (102)
+++++|||++|+.+++|+.+.++|++.-+..
T Consensus 74 ~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 74 LSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999988653
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=29.58 E-value=25 Score=26.41 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 034170 45 KGFGLFTILVGVSLFNWYKYQK 66 (102)
Q Consensus 45 n~~G~~I~i~G~~~Y~~~k~~~ 66 (102)
-..|..+.+.|+.+|-+.|.+.
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 3568888999999998876543
No 4
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=23.74 E-value=48 Score=18.17 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=16.5
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHH
Q 034170 42 TWLKGFGLFTILVGVSLFNWYKYQKL 67 (102)
Q Consensus 42 t~~n~~G~~I~i~G~~~Y~~~k~~~~ 67 (102)
+..|++|+++.+ =+++|.+.....+
T Consensus 9 ~lan~lG~~~~~-LIVlYH~v~~n~~ 33 (37)
T 2lat_A 9 IFANMLGVSLFL-LVVLYHYVAVNNP 33 (37)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHH-HHHHHHHHhcCcc
Confidence 456888876544 3678888766543
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.16 E-value=61 Score=18.33 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHh
Q 034170 54 VGVSLFNWYKYQKLQ 68 (102)
Q Consensus 54 ~G~~~Y~~~k~~~~~ 68 (102)
+|.++.-|.|.++.+
T Consensus 27 ~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 27 LGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHCSC
T ss_pred HHHHHHhheehhhhh
Confidence 344445555555433
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.04 E-value=43 Score=18.93 Aligned_cols=9 Identities=0% Similarity=0.165 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 034170 57 SLFNWYKYQ 65 (102)
Q Consensus 57 ~~Y~~~k~~ 65 (102)
.++-+.|.+
T Consensus 29 ~~~~~~RRR 37 (44)
T 2l2t_A 29 TFAVYVRRK 37 (44)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhhh
Confidence 333344444
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=19.32 E-value=1.3e+02 Score=18.80 Aligned_cols=14 Identities=7% Similarity=0.237 Sum_probs=7.9
Q ss_pred hhhhHHHHHHHHHH
Q 034170 47 FGLFTILVGVSLFN 60 (102)
Q Consensus 47 ~G~~I~i~G~~~Y~ 60 (102)
++.+++++|+++--
T Consensus 23 fA~vLfi~GI~iil 36 (72)
T 2jo1_A 23 IAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34456677774443
No 8
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=16.40 E-value=1.3e+02 Score=20.88 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhC
Q 034170 46 GFGLFTILVGVSLFNWYKYQKLQAG 70 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~k~~~~~~~ 70 (102)
++|++-++.+.++-+|.|.++..++
T Consensus 59 vmgffgff~~GImLsYiRSKk~E~s 83 (138)
T 2k21_A 59 VLGFFGFFTLGIMLSYIRSKKLEHS 83 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhHhhhcccc
Confidence 5677667777777777776655333
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=15.90 E-value=90 Score=16.44 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 034170 49 LFTILVGVSLFNWYKYQKLQA 69 (102)
Q Consensus 49 ~~I~i~G~~~Y~~~k~~~~~~ 69 (102)
..+.++++.++=..|-+++++
T Consensus 8 ~~v~~~~ifYFl~iRPQ~Kr~ 28 (37)
T 2rdd_B 8 MLVVFGLIFYFMILRPQQKRT 28 (37)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHH
Confidence 344555555555555555443
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=15.09 E-value=83 Score=19.50 Aligned_cols=19 Identities=21% Similarity=0.013 Sum_probs=14.6
Q ss_pred cchhhhhhHHHHHHHHHHH
Q 034170 43 WLKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 43 ~~n~~G~~I~i~G~~~Y~~ 61 (102)
...+.|++++++|.+.|-.
T Consensus 37 iak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 37 VAKVTALGISLLGIIGYII 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4467888888888887764
Done!