Query 034170
Match_columns 102
No_of_seqs 105 out of 577
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 18:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034170.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034170hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 52.2 1.3 9.5E-05 26.8 -0.2 25 47-71 26-50 (91)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 51.7 4.4 0.00032 24.4 2.4 24 46-69 36-59 (100)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 46.7 11 0.00081 22.3 3.7 30 32-61 52-84 (103)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 39.5 7.1 0.00052 23.8 1.9 23 46-68 42-64 (107)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 30.8 27 0.002 16.6 2.8 17 46-62 2-18 (27)
6 d1iwga8 f.35.1.1 (A:513-566,A: 19.4 24 0.0017 23.5 1.8 43 25-67 91-135 (222)
7 d1cola_ f.1.1.1 (A:) Colicin A 10.1 39 0.0029 23.1 0.8 50 9-59 129-182 (197)
8 d1jb0m_ f.23.19.1 (M:) Subunit 9.8 51 0.0037 16.0 0.9 11 2-12 16-26 (31)
9 d1rh5b_ f.23.28.1 (B:) Preprot 9.3 80 0.0058 17.3 1.8 18 44-61 27-44 (56)
10 d1oeya_ d.15.2.2 (A:) Neutroph 9.2 53 0.0039 19.4 1.1 27 69-96 37-63 (82)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=52.21 E-value=1.3 Score=26.77 Aligned_cols=25 Identities=8% Similarity=0.002 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCC
Q 034170 47 FGLFTILVGVSLFNWYKYQKLQAGH 71 (102)
Q Consensus 47 ~G~~I~i~G~~~Y~~~k~~~~~~~~ 71 (102)
+.+++.+.|.+.|...|+|+++.++
T Consensus 26 ~iv~v~V~~~~~~~~~ryR~~~~~~ 50 (91)
T d1fftb2 26 LIVVIPAILMAVGFAWKYRASNKDA 50 (91)
T ss_dssp TTTTTHHHHHHHTTTTTTTTSTTTC
T ss_pred HHHHHHHHHHHHhhheeeeccCCcc
Confidence 4566778888999999998765443
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=51.67 E-value=4.4 Score=24.44 Aligned_cols=24 Identities=4% Similarity=0.164 Sum_probs=17.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhh
Q 034170 46 GFGLFTILVGVSLFNWYKYQKLQA 69 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~k~~~~~~ 69 (102)
++++++.+.|++.|...|++.++.
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~~ 59 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTTC
T ss_pred HHHHHHHHHHHHHHHhhhhhccCC
Confidence 456667778889999988886543
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=46.73 E-value=11 Score=22.29 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=19.9
Q ss_pred eeeeeecC--cccc-chhhhhhHHHHHHHHHHH
Q 034170 32 VAVFYFHD--EFTW-LKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 32 lsv~ifgd--~~t~-~n~~G~~I~i~G~~~Y~~ 61 (102)
+.-+=||| |.|. -.++.++..++|+..+..
T Consensus 52 ~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~ 84 (103)
T d1r3jc_ 52 ATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGL 84 (103)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCccccCChhHHHHHHHHHHHHHHHHHH
Confidence 44444788 4443 377888888888877653
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=39.47 E-value=7.1 Score=23.82 Aligned_cols=23 Identities=4% Similarity=0.002 Sum_probs=17.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHh
Q 034170 46 GFGLFTILVGVSLFNWYKYQKLQ 68 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~k~~~~~ 68 (102)
+.++++.+.|...|...|+++++
T Consensus 42 ~~~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 42 ITAVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHHHhhhhhccC
Confidence 45666677888999998887553
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=30.76 E-value=27 Score=16.57 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=12.0
Q ss_pred hhhhhHHHHHHHHHHHH
Q 034170 46 GFGLFTILVGVSLFNWY 62 (102)
Q Consensus 46 ~~G~~I~i~G~~~Y~~~ 62 (102)
++|++++..|-++|.-+
T Consensus 2 vlgli~~tl~glf~aay 18 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 46887777777777653
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=19.39 E-value=24 Score=23.51 Aligned_cols=43 Identities=12% Similarity=-0.059 Sum_probs=28.3
Q ss_pred hhheece--eeeeeecCccccchhhhhhHHHHHHHHHHHHHHHHH
Q 034170 25 VTVQIAA--VAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKL 67 (102)
Q Consensus 25 LT~sV~G--lsv~ifgd~~t~~n~~G~~I~i~G~~~Y~~~k~~~~ 67 (102)
+-++++| ++..+++-+++....+|+.+.+...+-|..+-....
T Consensus 91 ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~i~~~~~~ 135 (222)
T d1iwga8 91 VPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFA 135 (222)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhhhhcccccchhhhhhhHHHHHHHHh
Confidence 3344444 666677888888888888887766666665544433
No 7
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=10.14 E-value=39 Score=23.12 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhccccchhheece--ee--eeeecCccccchhhhhhHHHHHHHHH
Q 034170 9 FFMVSTEFVLVSVTSAVTVQIAA--VA--VFYFHDEFTWLKGFGLFTILVGVSLF 59 (102)
Q Consensus 9 F~lnls~F~lI~~TSaLT~sV~G--ls--v~ifgd~~t~~n~~G~~I~i~G~~~Y 59 (102)
|++-+=...+-+..|++...+++ ++ .+..+-|.|++.++|+ +++..+..|
T Consensus 129 l~l~~Es~~~~~~At~va~~~fs~~~~~~~~~~g~~~~~iGI~g~-li~~~v~al 182 (197)
T d1cola_ 129 LMLEVESWVLSGIASSVALGIFSATLGAYALSLGVPAIAVGIAGI-LLAAVVGAL 182 (197)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccccccHHHHHHH-HHHHHHHHH
Confidence 34444444444555555555544 21 1234568888888888 655555444
No 8
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=9.82 E-value=51 Score=16.04 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=7.6
Q ss_pred chhHHHHHHHH
Q 034170 2 LSGGALAFFMV 12 (102)
Q Consensus 2 ~~~g~lAF~ln 12 (102)
+++|++||-+.
T Consensus 16 l~pg~lafrla 26 (31)
T d1jb0m_ 16 LLPAVLAFRLS 26 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46788888653
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.26 E-value=80 Score=17.29 Aligned_cols=18 Identities=22% Similarity=0.062 Sum_probs=13.3
Q ss_pred chhhhhhHHHHHHHHHHH
Q 034170 44 LKGFGLFTILVGVSLFNW 61 (102)
Q Consensus 44 ~n~~G~~I~i~G~~~Y~~ 61 (102)
..+.|++++++|.+.|-.
T Consensus 27 a~v~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 27 AKVTALGISLLGIIGYII 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356788888888877754
No 10
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.21 E-value=53 Score=19.38 Aligned_cols=27 Identities=26% Similarity=0.122 Sum_probs=18.9
Q ss_pred hCCCCCCCCCCccccccccceeeccccc
Q 034170 69 AGHANEDGMLGSRETNASAKYVILEEID 96 (102)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (102)
-..+++...+-++ .++++.+++++|++
T Consensus 37 L~l~~~~~~LSY~-~~~~~e~v~lsee~ 63 (82)
T d1oeya_ 37 LELRLEHTKLSYR-PRDSNELVPLSEDS 63 (82)
T ss_dssp TTCCGGGCCEEEC-CTTCSSCEECCTTT
T ss_pred hCCChhheEEEec-cCCCCceeccchHH
Confidence 3456666666664 57888999997554
Done!