BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034173
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40742|RAD23_ORYSJ Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica
GN=RAD23 PE=1 SV=2
Length = 392
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 24 RLSVSSPIKVRDLRKLIATSSANHL-PIENLRLVFRGKVL-DDTQDDDDR 71
++ V S KV D++++I T+ H+ P E L+ +GKVL DDT D+++
Sbjct: 14 QIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENK 63
>sp|A5D9M6|BAG6_PIG Large proline-rich protein BAG6 OS=Sus scrofa GN=BAG6 PE=2 SV=1
Length = 1128
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD 64
E ES+E+ VKT+ + + V + + V++ ++ IA S + +P E RL+++G+VL D
Sbjct: 12 EEPESLEVLVKTLDSQTRTFI-VGAQMNVKEFKEHIAASVS--IPSEKQRLIYQGRVLQD 68
Query: 65 TQ 66
+
Sbjct: 69 DK 70
>sp|Q6MG49|BAG6_RAT Large proline-rich protein BAG6 OS=Rattus norvegicus GN=Bag6 PE=2
SV=2
Length = 1146
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD 64
E +S+E+ VKT+ + + V + + V++ ++ IA S + +P E RL+++G+VL D
Sbjct: 12 EEPDSLEVLVKTLDSQTRTFI-VGAQMNVKEFKEHIAASVS--IPSEKQRLIYQGRVLQD 68
Query: 65 TQDDDD 70
+ D
Sbjct: 69 DKKLQD 74
>sp|P46379|BAG6_HUMAN Large proline-rich protein BAG6 OS=Homo sapiens GN=BAG6 PE=1 SV=2
Length = 1132
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD 64
E +S+E+ VKT+ + + V + + V++ ++ IA S + +P E RL+++G+VL D
Sbjct: 12 EEPDSLEVLVKTLDSQTRTFI-VGAQMNVKEFKEHIAASVS--IPSEKQRLIYQGRVLQD 68
Query: 65 TQ 66
+
Sbjct: 69 DK 70
>sp|Q9Z1R2|BAG6_MOUSE Large proline-rich protein BAG6 OS=Mus musculus GN=Bag6 PE=1 SV=1
Length = 1154
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD 64
E +S+E+ VKT+ + + V + + V++ ++ IA S + +P E RL+++G+VL D
Sbjct: 12 EEPDSLEVLVKTLDSQTRTFI-VGAQMNVKEFKEHIAASVS--IPSEKQRLIYQGRVLQD 68
Query: 65 TQ 66
+
Sbjct: 69 DK 70
>sp|P48510|DSK2_YEAST Ubiquitin domain-containing protein DSK2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DSK2 PE=1
SV=2
Length = 373
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 41 ATSSANHLPIENLRLVFRGKVLDDTQ 66
A + AN +P+ N RL++ GK+L D Q
Sbjct: 30 AINKANGIPVANQRLIYSGKILKDDQ 55
>sp|E1C1R4|UBP47_CHICK Ubiquitin carboxyl-terminal hydrolase 47 OS=Gallus gallus GN=USP47
PE=3 SV=1
Length = 1375
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 4 GEISESVEIT-VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF 57
GE+ V + +KT APP + V + ++LI S A HLP E +R+V
Sbjct: 711 GEVMVKVHVVDLKTESVAPPISVRAYLNQTVSEFKQLI--SKATHLPAETMRVVL 763
>sp|Q6BKX6|AIM24_DEBHA Altered inheritance of mitochondria protein 24, mitochondrial
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=AIM24 PE=3 SV=2
Length = 412
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 39 LIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNL 91
L+++SS N N + F +LD T D ++ LQ GG +N+S+F +
Sbjct: 132 LVSSSSKNFRLRTNRQKSFATLLLDGTNDWAVLNNTALQAYTGGTLNVSMFRI 184
>sp|Q6FSM8|FYV8_CANGA Protein FYV8 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=FYV8 PE=3 SV=1
Length = 767
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD--------------TQDDD 69
+LS + + RDL K+I+++S + + +ENLR +R LD+ +
Sbjct: 642 KLSEQNTMPTRDLNKIISSNSTHAIKLENLR-DYRN-TLDNFDSGLQTWIAYTLKSSSKT 699
Query: 70 DRDDVYLQLSNGGNINISLFNLDDLS 95
DRD ++ + + ++ + N DDLS
Sbjct: 700 DRDFIFQEYKSNSHVREAYANADDLS 725
>sp|Q19KS6|UBL4B_MONDO Ubiquitin-like protein 4B OS=Monodelphis domestica GN=UBL4B PE=2
SV=1
Length = 181
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDD 70
L VS KV L++L+ S H+P + RL+FRG+VL D + D
Sbjct: 15 LQVSENEKVFMLKRLV--SKQLHVPEKQQRLLFRGQVLADNKRLSD 58
>sp|A7X5R6|BAG6_ORNAN Large proline-rich protein BAG6 OS=Ornithorhynchus anatinus
GN=BAG6 PE=3 SV=1
Length = 1088
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66
+E++VKT+ + +V + + V++ ++ IA +A +P + RL+++G+VL D +
Sbjct: 24 LEVSVKTLD-SQTRTFTVGAEMTVKEFKEHIA--AAVSIPPDKQRLIYQGRVLQDDK 77
>sp|A3KPW9|BAG6_DANRE Large proline-rich protein BAG6 OS=Danio rerio GN=Bag6 PE=3 SV=1
Length = 1160
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD 64
E S +E+TVKT+ + +V V+ ++ IA S + ++ RL+++GKVL D
Sbjct: 2 EESGVIEVTVKTLD-SQSRTFTVRGEWTVKQFKEHIAASV--EISVDKQRLIYQGKVLQD 58
Query: 65 TQ 66
+
Sbjct: 59 ER 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,870,840
Number of Sequences: 539616
Number of extensions: 1286644
Number of successful extensions: 5793
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5772
Number of HSP's gapped (non-prelim): 34
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)