Query 034173
Match_columns 102
No_of_seqs 111 out of 1008
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01807 GDX_N ubiquitin-like d 99.9 2E-22 4.3E-27 125.6 7.4 74 10-91 1-74 (74)
2 cd01791 Ubl5 UBL5 ubiquitin-li 99.9 5.3E-22 1.1E-26 124.6 7.4 71 9-87 1-71 (73)
3 cd01797 NIRF_N amino-terminal 99.9 1.7E-21 3.8E-26 123.4 7.7 75 10-91 1-76 (78)
4 cd01792 ISG15_repeat1 ISG15 ub 99.9 1.8E-21 3.9E-26 123.2 7.4 76 10-93 3-80 (80)
5 cd01802 AN1_N ubiquitin-like d 99.9 3.8E-21 8.2E-26 127.7 9.0 77 7-91 25-101 (103)
6 cd01804 midnolin_N Ubiquitin-l 99.8 4.4E-21 9.5E-26 121.2 8.0 75 9-92 1-75 (78)
7 cd01793 Fubi Fubi ubiquitin-li 99.8 5.4E-21 1.2E-25 119.2 8.1 73 10-92 1-73 (74)
8 PTZ00044 ubiquitin; Provisiona 99.8 6.3E-21 1.4E-25 118.7 7.9 75 10-92 1-75 (76)
9 cd01805 RAD23_N Ubiquitin-like 99.8 8.4E-21 1.8E-25 118.3 8.3 74 10-91 1-76 (77)
10 cd01810 ISG15_repeat2 ISG15 ub 99.8 1.1E-20 2.4E-25 117.8 7.5 72 12-91 1-72 (74)
11 cd01806 Nedd8 Nebb8-like ubiq 99.8 2.1E-20 4.6E-25 115.6 8.3 75 10-92 1-75 (76)
12 cd01794 DC_UbP_C dendritic cel 99.8 9.4E-21 2E-25 117.8 6.7 69 12-88 1-69 (70)
13 cd01790 Herp_N Homocysteine-re 99.8 2.6E-20 5.6E-25 118.8 7.5 73 9-88 1-78 (79)
14 cd01798 parkin_N amino-termina 99.8 2E-20 4.4E-25 115.2 6.6 70 12-89 1-70 (70)
15 cd01803 Ubiquitin Ubiquitin. U 99.8 4.3E-20 9.3E-25 114.2 8.0 74 10-91 1-74 (76)
16 cd01808 hPLIC_N Ubiquitin-like 99.8 4E-20 8.6E-25 114.4 7.5 71 10-89 1-71 (71)
17 cd01809 Scythe_N Ubiquitin-lik 99.8 7.6E-20 1.6E-24 112.0 7.3 72 10-89 1-72 (72)
18 PF00240 ubiquitin: Ubiquitin 99.8 4.5E-19 9.8E-24 108.2 6.0 68 15-90 1-68 (69)
19 cd01796 DDI1_N DNA damage indu 99.8 5.4E-19 1.2E-23 109.8 6.1 67 12-86 1-69 (71)
20 cd01812 BAG1_N Ubiquitin-like 99.8 1.1E-18 2.4E-23 106.9 6.3 70 10-88 1-70 (71)
21 cd01763 Sumo Small ubiquitin-r 99.7 3.6E-17 7.9E-22 105.1 9.5 80 4-91 6-85 (87)
22 cd01800 SF3a120_C Ubiquitin-li 99.7 1.1E-17 2.4E-22 104.9 6.5 68 17-92 5-72 (76)
23 cd01813 UBP_N UBP ubiquitin pr 99.7 1.2E-17 2.6E-22 104.8 6.3 69 10-87 1-72 (74)
24 TIGR00601 rad23 UV excision re 99.7 1.6E-17 3.5E-22 131.2 7.8 74 10-91 1-77 (378)
25 KOG0005 Ubiquitin-like protein 99.7 1.4E-17 2.9E-22 101.3 3.5 70 10-87 1-70 (70)
26 KOG0010 Ubiquitin-like protein 99.7 6.6E-17 1.4E-21 130.2 6.7 74 9-91 15-88 (493)
27 smart00213 UBQ Ubiquitin homol 99.7 2.8E-16 6E-21 93.4 6.0 64 10-82 1-64 (64)
28 cd01814 NTGP5 Ubiquitin-like N 99.7 2.7E-16 5.9E-21 105.9 6.6 79 8-91 3-92 (113)
29 cd01815 BMSC_UbP_N Ubiquitin-l 99.7 1.9E-16 4.2E-21 100.1 5.2 53 29-88 19-74 (75)
30 KOG0004 Ubiquitin/40S ribosoma 99.6 1.8E-16 3.9E-21 111.6 4.3 74 10-91 1-74 (156)
31 cd01799 Hoil1_N Ubiquitin-like 99.6 3.6E-15 7.8E-20 93.9 6.8 69 11-88 4-74 (75)
32 KOG0011 Nucleotide excision re 99.6 6.2E-15 1.3E-19 114.2 6.6 74 10-91 1-76 (340)
33 cd01769 UBL Ubiquitin-like dom 99.5 1.9E-14 4.2E-19 86.4 6.4 67 14-88 2-68 (69)
34 KOG0003 Ubiquitin/60s ribosoma 99.5 5.4E-16 1.2E-20 104.0 -0.5 74 10-91 1-74 (128)
35 PF11976 Rad60-SLD: Ubiquitin- 99.5 1.4E-13 3E-18 84.6 5.3 71 10-88 1-72 (72)
36 cd01795 USP48_C USP ubiquitin- 99.4 2.4E-12 5.2E-17 85.4 6.8 62 24-91 18-79 (107)
37 cd01789 Alp11_N Ubiquitin-like 99.3 6.7E-12 1.4E-16 80.3 8.2 76 10-91 2-83 (84)
38 cd01801 Tsc13_N Ubiquitin-like 99.3 4.2E-12 9.1E-17 79.7 6.1 70 10-86 1-74 (77)
39 PLN02560 enoyl-CoA reductase 99.3 4.5E-12 9.8E-17 98.0 7.5 71 10-87 1-81 (308)
40 KOG4248 Ubiquitin-like protein 99.2 1.2E-11 2.6E-16 106.6 5.8 75 10-93 3-77 (1143)
41 KOG0001 Ubiquitin and ubiquiti 99.2 4.3E-10 9.3E-15 66.6 8.8 72 12-91 2-73 (75)
42 PF13881 Rad60-SLD_2: Ubiquiti 99.2 3.5E-10 7.6E-15 76.2 9.3 77 8-91 1-90 (111)
43 PF14560 Ubiquitin_2: Ubiquiti 99.1 3.1E-10 6.6E-15 72.5 6.2 79 10-91 2-85 (87)
44 cd01788 ElonginB Ubiquitin-lik 99.0 6.3E-10 1.4E-14 75.3 6.1 78 11-96 2-86 (119)
45 PF11543 UN_NPL4: Nuclear pore 98.9 2.3E-09 5E-14 68.3 5.0 75 8-87 3-78 (80)
46 cd00196 UBQ Ubiquitin-like pro 98.8 2.4E-08 5.2E-13 55.8 6.5 65 16-88 4-68 (69)
47 KOG1872 Ubiquitin-specific pro 98.3 2.5E-06 5.4E-11 69.2 7.3 70 10-88 4-74 (473)
48 KOG1769 Ubiquitin-like protein 98.2 2E-05 4.4E-10 52.1 8.7 76 8-91 19-94 (99)
49 PF10302 DUF2407: DUF2407 ubiq 98.2 6.4E-06 1.4E-10 54.3 6.0 56 12-67 3-60 (97)
50 KOG0006 E3 ubiquitin-protein l 97.9 2.4E-05 5.2E-10 61.6 5.8 59 23-88 16-74 (446)
51 KOG3493 Ubiquitin-like protein 97.9 3.4E-06 7.3E-11 52.2 0.8 69 10-86 2-70 (73)
52 PF08817 YukD: WXG100 protein 97.8 4.9E-05 1.1E-09 47.7 5.3 69 10-86 3-78 (79)
53 PF00789 UBX: UBX domain; Int 97.8 0.00016 3.6E-09 45.1 7.3 77 5-87 2-81 (82)
54 cd01811 OASL_repeat1 2'-5' oli 97.8 0.0002 4.3E-09 45.4 7.4 69 10-87 1-74 (80)
55 KOG4495 RNA polymerase II tran 97.7 3.9E-05 8.4E-10 50.9 2.8 60 12-78 3-64 (110)
56 KOG1639 Steroid reductase requ 97.6 0.0001 2.2E-09 56.3 4.7 71 10-86 1-76 (297)
57 KOG4583 Membrane-associated ER 97.6 4.5E-05 9.7E-10 60.2 2.6 65 7-76 7-72 (391)
58 smart00166 UBX Domain present 97.4 0.002 4.3E-08 40.3 8.2 74 8-86 3-78 (80)
59 PF13019 Telomere_Sde2: Telome 97.2 0.0042 9.1E-08 44.5 8.4 74 10-91 1-86 (162)
60 cd01774 Faf1_like2_UBX Faf1 ik 97.1 0.0085 1.8E-07 38.3 8.7 77 7-87 2-83 (85)
61 COG5417 Uncharacterized small 97.1 0.0048 1E-07 39.2 7.0 71 10-86 7-80 (81)
62 cd01772 SAKS1_UBX SAKS1-like U 97.0 0.01 2.2E-07 37.2 8.5 73 9-87 4-78 (79)
63 cd01767 UBX UBX (ubiquitin reg 96.8 0.018 4E-07 35.5 8.3 71 9-86 2-74 (77)
64 PF11470 TUG-UBL1: GLUT4 regul 96.8 0.0033 7.2E-08 38.6 4.6 62 17-86 4-65 (65)
65 KOG3206 Alpha-tubulin folding 96.7 0.006 1.3E-07 45.5 6.3 80 10-91 2-83 (234)
66 cd01771 Faf1_UBX Faf1 UBX doma 96.6 0.039 8.4E-07 34.9 8.6 74 8-87 3-78 (80)
67 cd01773 Faf1_like1_UBX Faf1 ik 96.6 0.036 7.8E-07 35.5 8.3 75 9-89 5-81 (82)
68 cd01770 p47_UBX p47-like ubiqu 96.3 0.038 8.3E-07 34.7 7.4 66 9-81 4-72 (79)
69 KOG0013 Uncharacterized conser 96.2 0.01 2.2E-07 44.4 4.9 63 18-88 155-217 (231)
70 COG5227 SMT3 Ubiquitin-like pr 95.9 0.033 7.3E-07 36.6 5.7 71 9-87 24-94 (103)
71 PRK06437 hypothetical protein; 95.4 0.12 2.7E-06 31.4 6.6 53 18-87 9-61 (67)
72 PLN02799 Molybdopterin synthas 95.3 0.096 2.1E-06 32.5 6.0 65 10-86 2-75 (82)
73 cd06406 PB1_P67 A PB1 domain i 95.3 0.052 1.1E-06 34.7 4.7 46 9-61 4-49 (80)
74 PF15044 CLU_N: Mitochondrial 95.2 0.056 1.2E-06 33.9 4.7 58 27-90 1-59 (76)
75 PRK08364 sulfur carrier protei 95.1 0.39 8.4E-06 29.2 8.1 61 9-87 4-64 (70)
76 cd00754 MoaD Ubiquitin domain 94.5 0.29 6.3E-06 29.7 6.6 52 24-87 19-74 (80)
77 PF14453 ThiS-like: ThiS-like 94.4 0.35 7.6E-06 29.0 6.5 48 24-89 9-56 (57)
78 PF14732 UAE_UbL: Ubiquitin/SU 94.1 0.61 1.3E-05 29.8 7.6 64 25-91 2-71 (87)
79 cd06409 PB1_MUG70 The MUG70 pr 93.8 0.15 3.3E-06 32.9 4.4 44 11-57 2-48 (86)
80 smart00666 PB1 PB1 domain. Pho 93.5 0.21 4.5E-06 30.6 4.6 46 10-59 2-47 (81)
81 PF10790 DUF2604: Protein of U 93.3 0.45 9.8E-06 29.5 5.7 68 18-91 4-73 (76)
82 KOG0012 DNA damage inducible p 92.6 0.14 3.1E-06 41.0 3.4 66 23-93 15-80 (380)
83 TIGR01682 moaD molybdopterin c 92.5 1.3 2.8E-05 27.2 7.1 51 24-86 19-73 (80)
84 cd06407 PB1_NLP A PB1 domain i 92.1 0.24 5.3E-06 31.4 3.5 38 18-58 8-46 (82)
85 cd01760 RBD Ubiquitin-like dom 91.6 1.2 2.7E-05 27.6 6.2 44 13-59 3-46 (72)
86 PF09379 FERM_N: FERM N-termin 91.5 0.73 1.6E-05 27.9 5.1 67 14-88 1-76 (80)
87 PRK07440 hypothetical protein; 91.2 1.3 2.7E-05 27.1 6.0 63 8-88 3-65 (70)
88 cd01775 CYR1_RA Ubiquitin doma 91.2 1.1 2.5E-05 29.6 6.0 77 20-100 12-96 (97)
89 PF14836 Ubiquitin_3: Ubiquiti 90.9 0.84 1.8E-05 29.6 5.1 63 24-93 17-84 (88)
90 smart00295 B41 Band 4.1 homolo 90.7 3.5 7.7E-05 28.7 8.7 40 8-50 2-41 (207)
91 PF00564 PB1: PB1 domain; Int 90.6 0.54 1.2E-05 28.7 4.0 47 10-59 2-48 (84)
92 KOG2982 Uncharacterized conser 90.6 1.1 2.3E-05 36.0 6.3 62 24-87 351-415 (418)
93 PF11620 GABP-alpha: GA-bindin 90.0 0.76 1.7E-05 29.8 4.2 59 24-89 6-64 (88)
94 cd00565 ThiS ThiaminS ubiquiti 89.8 1.6 3.4E-05 25.9 5.3 52 24-87 8-59 (65)
95 PF02597 ThiS: ThiS family; I 89.4 1 2.3E-05 26.9 4.4 55 24-87 15-71 (77)
96 PF08783 DWNN: DWNN domain; I 89.3 1.3 2.8E-05 27.8 4.9 40 12-51 1-41 (74)
97 COG5100 NPL4 Nuclear pore prot 88.5 2.4 5.2E-05 35.0 7.1 74 10-88 1-78 (571)
98 PF12754 Blt1: Cell-cycle cont 88.5 0.14 3E-06 40.2 0.0 64 7-77 76-158 (309)
99 COG2104 ThiS Sulfur transfer p 87.8 3.8 8.2E-05 25.1 6.2 61 9-87 2-62 (68)
100 cd05992 PB1 The PB1 domain is 87.8 1.4 3.1E-05 26.6 4.3 45 11-59 2-47 (81)
101 PF10209 DUF2340: Uncharacteri 87.6 3.9 8.5E-05 28.1 6.7 76 10-86 3-105 (122)
102 TIGR01687 moaD_arch MoaD famil 87.4 4.2 9.2E-05 25.2 6.4 53 24-87 19-82 (88)
103 PF08337 Plexin_cytopl: Plexin 87.3 2.4 5.2E-05 35.7 6.5 84 8-91 188-291 (539)
104 TIGR01683 thiS thiamine biosyn 87.1 2.8 6.1E-05 24.7 5.2 52 24-87 7-58 (64)
105 smart00455 RBD Raf-like Ras-bi 86.6 5.4 0.00012 24.4 6.7 44 13-59 3-46 (70)
106 PRK05863 sulfur carrier protei 86.2 2.4 5.3E-05 25.3 4.6 54 18-87 6-59 (65)
107 PRK05659 sulfur carrier protei 85.5 4.9 0.00011 23.6 5.7 52 24-87 9-60 (66)
108 PRK06488 sulfur carrier protei 84.3 6.2 0.00013 23.3 5.8 54 18-87 6-59 (65)
109 PF11834 DUF3354: Domain of un 83.9 3.7 8E-05 25.4 4.7 44 31-87 26-69 (69)
110 PRK11130 moaD molybdopterin sy 82.0 9.5 0.00021 23.5 6.9 51 24-86 18-74 (81)
111 PRK06083 sulfur carrier protei 81.1 7.8 0.00017 24.6 5.6 62 9-88 18-79 (84)
112 cd06411 PB1_p51 The PB1 domain 79.8 3.4 7.4E-05 26.2 3.6 34 24-59 10-43 (78)
113 PRK01777 hypothetical protein; 79.2 15 0.00032 23.9 7.5 62 9-86 3-73 (95)
114 PF12436 USP7_ICP0_bdg: ICP0-b 78.5 2.2 4.9E-05 32.0 2.9 77 8-91 67-154 (249)
115 cd01817 RGS12_RBD Ubiquitin do 78.4 14 0.0003 23.2 6.2 62 16-87 6-68 (73)
116 PF08825 E2_bind: E2 binding d 78.4 4 8.6E-05 26.0 3.6 60 25-88 1-70 (84)
117 cd06408 PB1_NoxR The PB1 domai 77.8 9.6 0.00021 24.6 5.3 46 10-60 3-48 (86)
118 PF10407 Cytokin_check_N: Cdc1 77.7 5.1 0.00011 25.0 3.9 62 25-90 7-71 (73)
119 KOG2086 Protein tyrosine phosp 77.4 7.6 0.00016 31.4 5.7 67 9-81 305-373 (380)
120 PRK08053 sulfur carrier protei 76.8 13 0.00028 22.0 5.5 55 18-87 6-60 (66)
121 cd06398 PB1_Joka2 The PB1 doma 76.7 6.2 0.00013 25.4 4.2 65 22-89 11-87 (91)
122 PF14451 Ub-Mut7C: Mut7-C ubiq 76.7 9.4 0.0002 24.1 5.0 47 24-86 26-73 (81)
123 cd01787 GRB7_RA RA (RAS-associ 76.6 7 0.00015 25.2 4.3 41 12-55 5-46 (85)
124 TIGR02958 sec_mycoba_snm4 secr 75.5 19 0.0004 29.5 7.6 73 10-89 3-80 (452)
125 PF14533 USP7_C2: Ubiquitin-sp 75.2 28 0.0006 25.4 7.8 52 9-62 20-78 (213)
126 PF02824 TGS: TGS domain; Int 74.8 5.5 0.00012 23.4 3.4 59 12-87 1-59 (60)
127 COG5222 Uncharacterized conser 74.1 16 0.00035 29.1 6.6 79 11-96 4-83 (427)
128 PRK06944 sulfur carrier protei 74.0 15 0.00032 21.3 5.9 51 24-87 9-59 (65)
129 PRK07696 sulfur carrier protei 73.8 14 0.0003 22.2 5.0 56 18-88 6-62 (67)
130 cd06410 PB1_UP2 Uncharacterize 73.5 8.7 0.00019 25.1 4.3 40 14-57 17-56 (97)
131 TIGR03595 Obg_CgtA_exten Obg f 73.2 1.6 3.4E-05 26.8 0.7 14 73-86 49-62 (69)
132 cd06396 PB1_NBR1 The PB1 domai 72.5 8.3 0.00018 24.6 3.9 34 12-49 3-38 (81)
133 PF09269 DUF1967: Domain of un 71.3 3.2 7E-05 25.3 1.8 21 73-98 49-69 (69)
134 PF02196 RBD: Raf-like Ras-bin 69.9 19 0.0004 21.9 5.0 41 13-56 4-44 (71)
135 cd01768 RA RA (Ras-associating 68.6 20 0.00044 21.9 5.1 45 20-66 12-64 (87)
136 KOG0007 Splicing factor 3a, su 67.0 2.9 6.4E-05 32.8 1.2 48 16-66 289-337 (341)
137 KOG4250 TANK binding protein k 65.7 10 0.00022 33.1 4.2 44 16-62 321-364 (732)
138 cd01666 TGS_DRG_C TGS_DRG_C: 64.1 32 0.00068 21.3 5.3 65 10-87 2-74 (75)
139 PF12436 USP7_ICP0_bdg: ICP0-b 62.4 17 0.00036 27.3 4.4 45 9-56 176-223 (249)
140 PRK11840 bifunctional sulfur c 62.2 35 0.00077 27.1 6.3 60 24-96 9-68 (326)
141 smart00314 RA Ras association 59.8 38 0.00083 20.8 5.6 56 9-66 4-66 (90)
142 PF03671 Ufm1: Ubiquitin fold 59.5 42 0.00091 21.2 5.7 69 10-86 5-75 (76)
143 KOG3391 Transcriptional co-rep 57.0 9.9 0.00021 26.8 2.2 26 67-92 114-139 (151)
144 KOG4842 Protein involved in si 56.8 2.9 6.3E-05 32.3 -0.5 75 19-97 12-105 (278)
145 cd01818 TIAM1_RBD Ubiquitin do 56.2 47 0.001 21.0 5.0 39 14-55 4-42 (77)
146 PTZ00380 microtubule-associate 55.7 15 0.00033 25.1 2.9 64 24-96 43-110 (121)
147 PF00794 PI3K_rbd: PI3-kinase 55.5 35 0.00076 21.9 4.6 78 7-89 14-102 (106)
148 cd01612 APG12_C Ubiquitin-like 53.3 56 0.0012 20.7 6.2 75 10-89 2-81 (87)
149 KOG2507 Ubiquitin regulatory p 53.3 53 0.0011 27.4 6.1 81 8-93 313-395 (506)
150 PF02192 PI3K_p85B: PI3-kinase 53.2 17 0.00037 22.8 2.7 19 24-42 3-21 (78)
151 KOG1364 Predicted ubiquitin re 53.1 18 0.00039 29.0 3.3 68 11-83 279-349 (356)
152 cd06397 PB1_UP1 Uncharacterize 51.6 39 0.00085 21.6 4.1 45 11-59 2-46 (82)
153 cd01776 Rin1_RA Ubiquitin doma 49.1 34 0.00074 22.1 3.6 36 19-56 12-48 (87)
154 KOG2689 Predicted ubiquitin re 49.1 67 0.0015 25.1 5.8 74 8-86 209-284 (290)
155 PF00788 RA: Ras association ( 48.4 57 0.0012 19.6 4.6 46 9-56 4-52 (93)
156 smart00143 PI3K_p85B PI3-kinas 48.0 20 0.00044 22.6 2.4 19 24-42 3-21 (78)
157 PF04023 FeoA: FeoA domain; I 46.9 28 0.00061 20.5 2.9 29 73-101 28-56 (74)
158 KOG3439 Protein conjugation fa 45.8 92 0.002 21.2 5.4 79 8-91 29-110 (116)
159 cd01764 Urm1 Urm1-like ubuitin 44.0 60 0.0013 20.7 4.2 55 26-86 24-87 (94)
160 smart00144 PI3K_rbd PI3-kinase 43.6 78 0.0017 20.6 4.8 80 7-91 15-106 (108)
161 KOG3309 Ferredoxin [Energy pro 43.1 42 0.00092 24.0 3.7 28 8-36 42-69 (159)
162 PF06487 SAP18: Sin3 associate 42.8 28 0.00061 23.6 2.7 55 29-88 45-120 (120)
163 PF09014 Sushi_2: Beta-2-glyco 42.7 27 0.00059 22.5 2.4 47 46-99 4-50 (85)
164 cd01777 SNX27_RA Ubiquitin dom 42.0 46 0.00099 21.5 3.4 42 10-54 2-43 (87)
165 PF00276 Ribosomal_L23: Riboso 40.2 44 0.00094 21.3 3.1 38 24-63 24-62 (91)
166 KOG2561 Adaptor protein NUB1, 39.7 28 0.00061 29.2 2.7 59 24-89 53-111 (568)
167 PRK05841 flgE flagellar hook p 39.7 40 0.00086 28.9 3.6 42 7-51 246-296 (603)
168 COG1977 MoaD Molybdopterin con 39.5 44 0.00094 20.8 3.0 48 28-86 25-77 (84)
169 PTZ00490 Ferredoxin superfamil 39.3 58 0.0013 22.7 3.9 29 7-36 33-61 (143)
170 COG1153 FwdD Formylmethanofura 39.0 14 0.0003 25.5 0.7 18 71-88 38-55 (128)
171 PF02991 Atg8: Autophagy prote 39.0 66 0.0014 21.2 3.9 58 25-90 37-99 (104)
172 PF07929 PRiA4_ORF3: Plasmid p 38.7 47 0.001 23.2 3.4 41 10-52 7-47 (179)
173 KOG2013 SMT3/SUMO-activating c 36.6 78 0.0017 27.0 4.7 62 24-88 446-510 (603)
174 PRK11347 antitoxin ChpS; Provi 35.1 34 0.00074 21.6 2.0 18 73-90 21-38 (83)
175 PRK05738 rplW 50S ribosomal pr 34.8 1.1E+02 0.0023 19.6 4.3 37 24-62 24-61 (92)
176 PF08154 NLE: NLE (NUC135) dom 34.6 1E+02 0.0022 18.2 6.3 54 10-63 2-58 (65)
177 TIGR00691 spoT_relA (p)ppGpp s 34.6 1.5E+02 0.0032 25.7 6.3 64 10-90 360-423 (683)
178 PF02017 CIDE-N: CIDE-N domain 34.3 86 0.0019 19.8 3.7 50 31-90 21-72 (78)
179 TIGR02008 fdx_plant ferredoxin 33.3 85 0.0018 19.8 3.7 27 9-36 2-28 (97)
180 cd01766 Ufm1 Urm1-like ubiquit 32.5 1.3E+02 0.0029 19.0 6.8 73 10-89 5-78 (82)
181 PF03459 TOBE: TOBE domain; I 31.9 46 0.001 18.9 2.1 18 73-90 42-59 (64)
182 PRK10872 relA (p)ppGpp synthet 31.1 1.5E+02 0.0033 26.1 5.9 63 11-90 405-467 (743)
183 cd02413 40S_S3_KH K homology R 31.1 1.4E+02 0.0029 18.6 4.4 43 8-55 30-72 (81)
184 TIGR02609 doc_partner putative 30.5 45 0.00098 20.3 2.0 18 73-90 19-36 (74)
185 PF02563 Poly_export: Polysacc 29.8 22 0.00047 21.9 0.4 28 73-100 8-35 (82)
186 PF14807 AP4E_app_platf: Adapt 28.8 1.4E+02 0.003 19.7 4.2 54 31-92 31-88 (104)
187 cd01782 AF6_RA_repeat1 Ubiquit 28.7 1.4E+02 0.003 20.2 4.2 40 8-49 22-62 (112)
188 KOG2500 Uncharacterized conser 28.0 48 0.001 25.3 2.0 18 74-91 148-165 (253)
189 KOG3751 Growth factor receptor 27.6 83 0.0018 27.0 3.5 81 10-95 187-276 (622)
190 PF14533 USP7_C2: Ubiquitin-sp 27.4 25 0.00055 25.6 0.5 27 24-52 136-162 (213)
191 smart00266 CAD Domains present 27.0 1.6E+02 0.0034 18.4 4.0 55 25-90 14-70 (74)
192 PF08325 WLM: WLM domain; Int 26.6 85 0.0018 22.7 3.1 27 70-96 50-76 (186)
193 PRK09555 feoA ferrous iron tra 26.5 1.3E+02 0.0028 18.4 3.5 28 73-100 26-53 (74)
194 PF02362 B3: B3 DNA binding do 26.0 85 0.0018 19.2 2.7 19 73-91 69-87 (100)
195 cd06404 PB1_aPKC PB1 domain is 26.0 1.1E+02 0.0025 19.5 3.3 35 18-55 8-43 (83)
196 KOG4248 Ubiquitin-like protein 25.1 46 0.00099 30.5 1.7 58 27-91 341-398 (1143)
197 PF03658 Ub-RnfH: RnfH family 25.1 1.9E+02 0.0041 18.4 6.1 64 11-86 4-70 (84)
198 PRK12297 obgE GTPase CgtA; Rev 24.6 42 0.00091 27.3 1.3 23 72-99 401-423 (424)
199 PF08845 SymE_toxin: Toxin Sym 24.1 1.1E+02 0.0023 18.0 2.7 18 73-90 33-50 (57)
200 PF04620 FlaA: Flagellar filam 23.9 1.2E+02 0.0026 22.6 3.5 30 73-102 112-141 (217)
201 cd01668 TGS_RelA_SpoT TGS_RelA 23.5 1.4E+02 0.003 16.2 6.2 54 16-86 5-58 (60)
202 PF09662 Phenyl_P_gamma: Pheny 23.5 90 0.002 20.0 2.4 41 8-57 18-58 (84)
203 PLN02593 adrenodoxin-like ferr 23.3 1.3E+02 0.0028 19.9 3.3 26 10-36 1-26 (117)
204 PF06234 TmoB: Toluene-4-monoo 23.1 2.2E+02 0.0047 18.3 8.3 73 10-88 4-83 (85)
205 KOG4572 Predicted DNA-binding 23.0 1.4E+02 0.003 27.3 4.2 52 19-78 4-57 (1424)
206 PF11069 DUF2870: Protein of u 23.0 1E+02 0.0022 20.4 2.7 30 54-88 3-33 (98)
207 PF02037 SAP: SAP domain; Int 22.6 1.1E+02 0.0024 15.8 2.4 19 30-51 3-21 (35)
208 PF14178 YppF: YppF-like prote 22.4 76 0.0016 19.2 1.8 20 31-52 1-20 (60)
209 KOG3249 Uncharacterized conser 22.2 64 0.0014 23.5 1.7 57 33-96 8-65 (181)
210 PF04014 Antitoxin-MazE: Antid 22.0 92 0.002 17.0 2.1 18 73-90 16-33 (47)
211 PF08775 ParB: ParB family; I 21.7 39 0.00085 23.1 0.5 12 90-101 96-107 (127)
212 PF12949 HeH: HeH/LEM domain; 21.5 62 0.0013 17.3 1.2 14 29-42 2-15 (35)
213 PRK11092 bifunctional (p)ppGpp 21.5 2.8E+02 0.0061 24.2 5.7 60 11-89 387-448 (702)
214 KOG4598 Putative ubiquitin-spe 21.4 1.6E+02 0.0035 26.6 4.2 59 23-88 879-941 (1203)
215 KOG0400 40S ribosomal protein 21.3 81 0.0018 22.2 2.0 30 30-59 27-56 (151)
216 PRK08453 fliD flagellar cappin 21.2 1.2E+02 0.0027 26.4 3.5 24 18-42 136-159 (673)
217 COG1925 FruB Phosphotransferas 21.0 1.5E+02 0.0034 18.8 3.2 67 10-93 4-70 (88)
218 PF01568 Molydop_binding: Moly 20.9 39 0.00086 21.1 0.4 15 73-87 39-53 (110)
219 PF04225 OapA: Opacity-associa 20.8 37 0.00081 21.3 0.3 28 71-99 57-84 (85)
220 PF13037 DUF3898: Domain of un 20.8 1.1E+02 0.0023 20.0 2.4 26 73-102 40-71 (91)
221 PF11525 CopK: Copper resistan 20.7 47 0.001 20.8 0.7 14 73-86 7-20 (73)
222 cd01669 TGS_Ygr210_C TGS_Ygr21 20.6 2.2E+02 0.0047 17.4 4.7 51 24-87 24-75 (76)
223 PRK09570 rpoH DNA-directed RNA 20.5 1.9E+02 0.0042 18.2 3.5 48 31-91 18-65 (79)
224 TIGR00638 Mop molybdenum-pteri 20.2 89 0.0019 17.8 1.8 19 73-91 44-62 (69)
No 1
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.88 E-value=2e-22 Score=125.61 Aligned_cols=74 Identities=27% Similarity=0.356 Sum_probs=70.4
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+.+|+.+ .++|++++||++||++|++ +.|+|+++|||+|+|+.|+|+.+ |++|||++|++||++++
T Consensus 1 m~i~vk~~~G~~~-~l~v~~~~tV~~lK~~i~~--~~gi~~~~q~L~~~G~~L~d~~~-----L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 1 MFLTVKLLQGREC-SLQVSEKESVSTLKKLVSE--HLNVPEEQQRLLFKGKALADDKR-----LSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEECCCCCC-----HHHCCCCCCCEEEEEEc
Confidence 7899999999988 8999999999999999999 99999999999999999998888 99999999999999988
Q ss_pred cC
Q 034173 90 NL 91 (102)
Q Consensus 90 ~~ 91 (102)
.|
T Consensus 73 ~~ 74 (74)
T cd01807 73 PP 74 (74)
T ss_pred CC
Confidence 54
No 2
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.87 E-value=5.3e-22 Score=124.55 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=67.0
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
+|+|+||++.|+.+ .+++++++||++||++|++ +.++|+++|||+|.|++|+|+.+ |++|||++|++||+-
T Consensus 1 ~~~i~vkt~~Gk~~-~~~v~~~~TV~~LK~~I~~--~~~~~~~~qrLi~~Gk~L~D~~t-----L~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKV-RVKCNPDDTIGDLKKLIAA--QTGTRPEKIVLKKWYTIFKDHIS-----LGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHH--HhCCChHHEEEEeCCcCCCCCCC-----HHHcCCCCCCEEEEE
Confidence 48999999999988 8999999999999999998 88999999999999999988888 999999999999974
No 3
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.86 E-value=1.7e-21 Score=123.39 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=69.1
Q ss_pred EEEEEEcCCCCCceEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~-v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
|+|+||+.+|+....++ ++++.||++||++|++ ..|+|+++|||+|+||.|+|+.+ |++|||++|++|++++
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~--~~gi~~~~QrLi~~Gk~L~D~~t-----L~~y~i~~~~~i~l~~ 73 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQE--LFNVEPECQRLFYRGKQMEDGHT-----LFDYNVGLNDIIQLLV 73 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHH--HhCCCHHHeEEEeCCEECCCCCC-----HHHcCCCCCCEEEEEE
Confidence 79999999998732775 7899999999999999 99999999999999999999888 9999999999999999
Q ss_pred ecC
Q 034173 89 FNL 91 (102)
Q Consensus 89 ~~~ 91 (102)
+.-
T Consensus 74 ~~~ 76 (78)
T cd01797 74 RQD 76 (78)
T ss_pred ecC
Confidence 863
No 4
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.85 E-value=1.8e-21 Score=123.23 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=71.8
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEE--EeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrL--i~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
|+|+||+.+|+.+ .+++++++||++||++|++ ..++|+++||| +|+|++|+|+.+ |++|||++|++|+++
T Consensus 3 ~~i~Vk~~~G~~~-~~~v~~~~TV~~lK~~I~~--~~~i~~~~qrL~~~~~G~~L~D~~t-----L~~~gi~~gs~l~l~ 74 (80)
T cd01792 3 WDLKVKMLGGNEF-LVSLRDSMTVSELKQQIAQ--KIGVPAFQQRLAHLDSREVLQDGVP-----LVSQGLGPGSTVLLV 74 (80)
T ss_pred eEEEEEeCCCCEE-EEEcCCCCcHHHHHHHHHH--HhCCCHHHEEEEeccCCCCCCCCCC-----HHHcCCCCCCEEEEE
Confidence 8999999999988 8999999999999999998 88999999999 999999988888 999999999999999
Q ss_pred EecCCC
Q 034173 88 LFNLDD 93 (102)
Q Consensus 88 ~~~~~~ 93 (102)
++++.+
T Consensus 75 ~~~~~~ 80 (80)
T cd01792 75 VQNCSE 80 (80)
T ss_pred EEccCC
Confidence 998853
No 5
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.85 E-value=3.8e-21 Score=127.74 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=73.0
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
++.|+|+||+++|+.+ .++|++++||.+||++|++ +.|+|+++|||+|+|+.|+|+.+ |++|+|++|++||+
T Consensus 25 ~~~M~I~Vk~l~G~~~-~leV~~~~TV~~lK~kI~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dy~I~~~stL~l 96 (103)
T cd01802 25 YDTMELFIETLTGTCF-ELRVSPFETVISVKAKIQR--LEGIPVAQQHLIWNNMELEDEYC-----LNDYNISEGCTLKL 96 (103)
T ss_pred CCCEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHH--HhCCChHHEEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 5679999999999988 8999999999999999998 99999999999999999998888 99999999999999
Q ss_pred EEecC
Q 034173 87 SLFNL 91 (102)
Q Consensus 87 ~~~~~ 91 (102)
+++.+
T Consensus 97 ~~~l~ 101 (103)
T cd01802 97 VLAMR 101 (103)
T ss_pred EEecC
Confidence 99865
No 6
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.85 E-value=4.4e-21 Score=121.20 Aligned_cols=75 Identities=21% Similarity=0.249 Sum_probs=69.4
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.|+|+||+..|+.+ ++++++++||++||++|++ +.++|+++|||+|+|++|+|+ + |++|||++|++||++.
T Consensus 1 ~m~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~--~~~~~~~~qrL~~~Gk~L~d~-~-----L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 1 PMNLNIHSTTGTRF-DLSVPPDETVEGLKKRISQ--RLKVPKERLALLHRETRLSSG-K-----LQDLGLGDGSKLTLVP 71 (78)
T ss_pred CeEEEEEECCCCEE-EEEECCcCHHHHHHHHHHH--HhCCChHHEEEEECCcCCCCC-c-----HHHcCCCCCCEEEEEe
Confidence 48999999999887 8999999999999999998 889999999999999999887 7 9999999999999987
Q ss_pred ecCC
Q 034173 89 FNLD 92 (102)
Q Consensus 89 ~~~~ 92 (102)
.-+.
T Consensus 72 ~~~~ 75 (78)
T cd01804 72 TVEA 75 (78)
T ss_pred eccc
Confidence 6543
No 7
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.85 E-value=5.4e-21 Score=119.21 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=67.2
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+. +.. .++|++++||++||++|++ +.|+|+++|||+|+|+.|+|+.+ |++|+|++++|||++++
T Consensus 1 mqi~vk~~--~~~-~l~v~~~~tV~~lK~~i~~--~~gip~~~q~Li~~Gk~L~D~~t-----L~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 1 MQLFVRAQ--NTH-TLEVTGQETVSDIKAHVAG--LEGIDVEDQVLLLAGVPLEDDAT-----LGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEECC--CEE-EEEECCcCcHHHHHHHHHh--hhCCCHHHEEEEECCeECCCCCC-----HHHcCCCCCCEEEEEEe
Confidence 78999984 455 8999999999999999999 99999999999999999998888 99999999999999998
Q ss_pred cCC
Q 034173 90 NLD 92 (102)
Q Consensus 90 ~~~ 92 (102)
-+.
T Consensus 71 l~G 73 (74)
T cd01793 71 LLG 73 (74)
T ss_pred cCC
Confidence 653
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.85 E-value=6.3e-21 Score=118.71 Aligned_cols=75 Identities=16% Similarity=0.308 Sum_probs=71.0
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+.+|+.+ .++++++.||.+||++|++ ..|+|+++|||+|+|+.|.|+.+ |++|+|++|++||++++
T Consensus 1 m~i~vk~~~G~~~-~l~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~L~d~~~-----l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 1 MQILIKTLTGKKQ-SFNFEPDNTVQQVKMALQE--KEGIDVKQIRLIYSGKQMSDDLK-----LSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEEccCCCc-----HHHcCCCCCCEEEEEEE
Confidence 7899999999988 8999999999999999999 99999999999999999988888 99999999999999998
Q ss_pred cCC
Q 034173 90 NLD 92 (102)
Q Consensus 90 ~~~ 92 (102)
..+
T Consensus 73 ~~g 75 (76)
T PTZ00044 73 LRG 75 (76)
T ss_pred ccC
Confidence 653
No 9
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.84 E-value=8.4e-21 Score=118.26 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=70.2
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCC--CCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHL--PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~i--p~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
|+|+||+.+|+.+ .+++++++||.+||++|++ ..++ |+++|||+|+|+.|+|+.+ |++|||++|++|+++
T Consensus 1 m~i~vk~~~g~~~-~l~v~~~~TV~~lK~~i~~--~~~i~~~~~~q~L~~~G~~L~d~~~-----L~~~~i~~~~~i~~~ 72 (77)
T cd01805 1 MKITFKTLKQQTF-PIEVDPDDTVAELKEKIEE--EKGCDYPPEQQKLIYSGKILKDDTT-----LEEYKIDEKDFVVVM 72 (77)
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--hhCCCCChhHeEEEECCEEccCCCC-----HHHcCCCCCCEEEEE
Confidence 7899999999888 8999999999999999999 8898 9999999999999988888 999999999999999
Q ss_pred EecC
Q 034173 88 LFNL 91 (102)
Q Consensus 88 ~~~~ 91 (102)
++.+
T Consensus 73 ~~~~ 76 (77)
T cd01805 73 VSKP 76 (77)
T ss_pred EecC
Confidence 9875
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.84 E-value=1.1e-20 Score=117.78 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=68.4
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEecC
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~ 91 (102)
|+||++.|+.+ ++++++++||++||++|++ ..|+|+++|||+|+|+.|+|+.+ |++|||++|++|+++++..
T Consensus 1 i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~--~~gi~~~~q~L~~~G~~L~D~~t-----L~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSS-IYEVQLTQTVATLKQQVSQ--RERVQADQFWLSFEGRPMEDEHP-----LGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEE-EEEECCcChHHHHHHHHHH--HhCCCHHHeEEEECCEECCCCCC-----HHHcCCCCCCEEEEEEEcc
Confidence 68999999988 9999999999999999998 99999999999999999998888 9999999999999998864
No 11
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.83 E-value=2.1e-20 Score=115.58 Aligned_cols=75 Identities=20% Similarity=0.360 Sum_probs=70.6
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+.+|+.+ .++++++.||++||++|++ ..++|+++|||+|+|+.|.|+.+ |++|+|++|++||++++
T Consensus 1 m~i~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~--~~g~~~~~qrL~~~g~~L~d~~t-----l~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 1 MLIKVKTLTGKEI-EIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDDKT-----AADYKLEGGSVLHLVLA 72 (76)
T ss_pred CEEEEEeCCCCEE-EEEECCCCCHHHHHHHHhH--hhCCChhhEEEEECCeEccCCCC-----HHHcCCCCCCEEEEEEE
Confidence 7899999999988 8999999999999999998 89999999999999999988888 99999999999999998
Q ss_pred cCC
Q 034173 90 NLD 92 (102)
Q Consensus 90 ~~~ 92 (102)
..+
T Consensus 73 ~~g 75 (76)
T cd01806 73 LRG 75 (76)
T ss_pred ccC
Confidence 653
No 12
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.83 E-value=9.4e-21 Score=117.82 Aligned_cols=69 Identities=23% Similarity=0.239 Sum_probs=65.6
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
++||.++|+.+ .+++++++||++||++|++ ..|+|+++|||+|+|++|+|+.+ |++|+|++|++|||++
T Consensus 1 ~~vk~~~G~~~-~l~v~~~~TV~~lK~~I~~--~~gi~~~~q~Li~~G~~L~D~~~-----l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDV-KLSVSSKDTVGQLKKQLQA--AEGVDPCCQRWFFSGKLLTDKTR-----LQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEE-EEEECCcChHHHHHHHHHH--HhCCCHHHeEEEECCeECCCCCC-----HHHcCCCCCCEEEEEe
Confidence 46899999998 9999999999999999998 89999999999999999998888 9999999999999987
No 13
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.83 E-value=2.6e-20 Score=118.81 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=63.7
Q ss_pred cEEEEEEcCCCCCc-eEEEecCCCcHHHHHHHHHhccCC--CCCCCceEEEeCCeecCCCCCCCCCCccccC--CCCCCE
Q 034173 9 SVEITVKTIGPAPP-SRLSVSSPIKVRDLRKLIATSSAN--HLPIENLRLVFRGKVLDDTQDDDDRDDVYLQ--LSNGGN 83 (102)
Q Consensus 9 ~i~I~vK~~~~~~~-~~l~v~~~~TV~~LK~~Ia~~~~~--~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~--I~~g~t 83 (102)
+|+|+||+++++.+ ..+++++++||++||++|++ .. .+|+++|||||+||+|+|+.+ |++|+ +.+|.|
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~--~~~~~~~~~~QrLIy~GKiLkD~~t-----L~~~~~~~~~~~t 73 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSR--VYPSKPLEQDQRLIYSGKLLPDHLK-----LRDVLRKQDEYHM 73 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHH--hcCCCCChhHeEEEEcCeeccchhh-----HHHHhhcccCCce
Confidence 48999999999985 14555899999999999998 54 466899999999999998888 99996 999999
Q ss_pred EEEEE
Q 034173 84 INISL 88 (102)
Q Consensus 84 i~l~~ 88 (102)
|||+.
T Consensus 74 iHLV~ 78 (79)
T cd01790 74 VHLVC 78 (79)
T ss_pred EEEEe
Confidence 99975
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.82 E-value=2e-20 Score=115.25 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=66.4
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+||+.+|+.+ .+++++++||++||++|++ +.|+|+++|||+|+|+.|+|+.+ |++|||++|+|||++.|
T Consensus 1 i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~gi~~~~q~Li~~G~~L~d~~~-----l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTF-PVEVDPDTDIKQLKEVVAK--RQGVPPDQLRVIFAGKELRNTTT-----IQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEE-EEEECCCChHHHHHHHHHH--HHCCCHHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEEeC
Confidence 58999999988 8999999999999999999 99999999999999999998888 99999999999999864
No 15
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.82 E-value=4.3e-20 Score=114.18 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=70.2
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+.+|+.+ .+++++++||++||++|++ ..++|+++|||+|+|+.|.|+.+ |++|++++|++||++++
T Consensus 1 m~i~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~g~~~~~q~L~~~g~~L~d~~~-----L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (76)
T ss_pred CEEEEEcCCCCEE-EEEECCcCcHHHHHHHHHH--HhCCCHHHeEEEECCEECCCCCc-----HHHcCCCCCCEEEEEEE
Confidence 7899999999988 8999999999999999998 99999999999999999988888 99999999999999998
Q ss_pred cC
Q 034173 90 NL 91 (102)
Q Consensus 90 ~~ 91 (102)
..
T Consensus 73 ~~ 74 (76)
T cd01803 73 LR 74 (76)
T ss_pred cc
Confidence 54
No 16
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.82 E-value=4e-20 Score=114.36 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=66.2
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+.+|+ . .+++++++||.+||++|++ ..++|+++|||+|+|+.|.|+.+ |++|||++|++||++++
T Consensus 1 ~~i~vk~~~g~-~-~l~v~~~~TV~~lK~~I~~--~~~i~~~~~~Li~~Gk~L~d~~t-----L~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-E-EIEIAEDASVKDFKEAVSK--KFKANQEQLVLIFAGKILKDTDT-----LTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-E-EEEECCCChHHHHHHHHHH--HhCCCHHHEEEEECCeEcCCCCc-----HHHcCCCCCCEEEEEEC
Confidence 57999999986 4 8999999999999999998 88999999999999999988888 99999999999999874
No 17
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.81 E-value=7.6e-20 Score=112.03 Aligned_cols=72 Identities=31% Similarity=0.505 Sum_probs=68.0
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||+++|+.. .++++++.||.+||++|++ ..|+|+++|||+|+|+.|+|+.+ |++|||++|++||+.++
T Consensus 1 i~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~L~d~~~-----L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTH-TFTVEEEITVLDLKEKIAE--EVGIPVEQQRLIYSGRVLKDDET-----LSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCEECCCcCc-----HHHCCCCCCCEEEEEeC
Confidence 7899999999887 8999999999999999998 99999999999999999988888 99999999999999764
No 18
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.78 E-value=4.5e-19 Score=108.19 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=64.1
Q ss_pred EcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEec
Q 034173 15 KTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 15 K~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~ 90 (102)
|+++|+.+ .++|+++.||.+||++|++ ..++|+++|+|+|+|+.|+|+.+ |.+|||++|++|++++++
T Consensus 1 k~~~g~~~-~~~v~~~~tV~~lK~~i~~--~~~~~~~~~~L~~~G~~L~d~~t-----L~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTF-TLEVDPDDTVADLKQKIAE--ETGIPPEQQRLIYNGKELDDDKT-----LSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEE-EEEEETTSBHHHHHHHHHH--HHTSTGGGEEEEETTEEESTTSB-----TGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEE-EEEECCCCCHHHhhhhccc--ccccccccceeeeeeecccCcCc-----HHHcCCCCCCEEEEEEec
Confidence 67888877 9999999999999999999 99999999999999999988888 999999999999998875
No 19
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.78 E-value=5.4e-19 Score=109.76 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=62.2
Q ss_pred EEEEcC-CCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCC-CCCCCCCccccCCCCCCEEEE
Q 034173 12 ITVKTI-GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 12 I~vK~~-~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~-~t~~~~~L~~~~I~~g~ti~l 86 (102)
|+||+. +|+.+ .+++++++||++||++|++ ..|+|+++|||+|+|+.|.|+ .+ |++|||++|++|||
T Consensus 1 l~v~~~~~g~~~-~l~v~~~~TV~~lK~~I~~--~~gip~~~q~Li~~Gk~L~D~~~~-----L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTF-SLDVDPDLELENFKALCEA--ESGIPASQQQLIYNGRELVDNKRL-----LALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEE-EEEECCcCCHHHHHHHHHH--HhCCCHHHeEEEECCeEccCCccc-----HHHcCCCCCCEEEE
Confidence 578999 88777 8999999999999999998 999999999999999999876 57 99999999999997
No 20
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.77 E-value=1.1e-18 Score=106.89 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=64.6
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
|+|+||+. |+.. ++++++++||.+||++|++ ..|+|+++|||+|+|+.|.|+.+ |++|||++|++|+++.
T Consensus 1 i~i~vk~~-g~~~-~i~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~l~d~~~-----L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESH-DLSISSQATFGDLKKMLAP--VTGVEPRDQKLIFKGKERDDAET-----LDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEE-EEEECCCCcHHHHHHHHHH--hhCCChHHeEEeeCCcccCccCc-----HHHcCCCCCCEEEEec
Confidence 68999996 6666 8999999999999999998 99999999999999999988777 9999999999999864
No 21
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.73 E-value=3.6e-17 Score=105.15 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=74.6
Q ss_pred CCCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCE
Q 034173 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 4 ~~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~t 83 (102)
++.+..|+|+|++..|+.. .+.|.+++|+..||+++++ +.++|+++|||+|.|+.|.++.| +++|++++|++
T Consensus 6 ~~~~~~i~I~v~~~~g~~~-~~~v~~~~~l~~l~~~y~~--~~gi~~~~~rf~f~G~~L~~~~T-----~~~l~m~d~d~ 77 (87)
T cd01763 6 GEISEHINLKVKGQDGNEV-FFKIKRSTPLKKLMEAYCQ--RQGLSMNSVRFLFDGQRIRDNQT-----PDDLGMEDGDE 77 (87)
T ss_pred CCCCCeEEEEEECCCCCEE-EEEEcCCCHHHHHHHHHHH--HhCCCccceEEEECCeECCCCCC-----HHHcCCCCCCE
Confidence 4567789999999999988 8999999999999999999 99999999999999999998888 99999999999
Q ss_pred EEEEEecC
Q 034173 84 INISLFNL 91 (102)
Q Consensus 84 i~l~~~~~ 91 (102)
|+++++-.
T Consensus 78 I~v~l~l~ 85 (87)
T cd01763 78 IEVMLEQT 85 (87)
T ss_pred EEEEEecc
Confidence 99998754
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.73 E-value=1.1e-17 Score=104.89 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=62.8
Q ss_pred CCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEecCC
Q 034173 17 IGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNLD 92 (102)
Q Consensus 17 ~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~~ 92 (102)
++|+.+ ++++++++||.+||++|++ ..|+|+++|+|+|+|+.|+|+.+ |++|+|++|++|+|+++..+
T Consensus 5 l~g~~~-~l~v~~~~TV~~lK~~i~~--~~gip~~~q~L~~~G~~L~d~~t-----L~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQML-NFTLQLSDPVSVLKVKIHE--ETGMPAGKQKLQYEGIFIKDSNS-----LAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEE-EEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCEEcCCCCc-----HHHcCCCCCCEEEEEEecCC
Confidence 366766 8999999999999999998 99999999999999999988888 99999999999999998764
No 23
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.72 E-value=1.2e-17 Score=104.83 Aligned_cols=69 Identities=26% Similarity=0.252 Sum_probs=62.5
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe---CCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF---RGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~---~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
|+|.||- +|+.+ .++|++++||++||++|++ .+++|+++|||+| +|+.++|+.+ |++|+|++|++|++
T Consensus 1 ~~i~vk~-~g~~~-~v~v~~~~Tv~~lK~~i~~--~tgvp~~~QKLi~~~~~Gk~l~D~~~-----L~~~~i~~g~~i~l 71 (74)
T cd01813 1 VPVIVKW-GGQEY-SVTTLSEDTVLDLKQFIKT--LTGVLPERQKLLGLKVKGKPAEDDVK-----ISALKLKPNTKIMM 71 (74)
T ss_pred CEEEEEE-CCEEE-EEEECCCCCHHHHHHHHHH--HHCCCHHHEEEEeecccCCcCCCCcC-----HHHcCCCCCCEEEE
Confidence 5677887 55666 8999999999999999999 9999999999996 9999988888 99999999999998
Q ss_pred E
Q 034173 87 S 87 (102)
Q Consensus 87 ~ 87 (102)
+
T Consensus 72 m 72 (74)
T cd01813 72 M 72 (74)
T ss_pred E
Confidence 6
No 24
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=1.6e-17 Score=131.24 Aligned_cols=74 Identities=16% Similarity=0.338 Sum_probs=70.3
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCC---CCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH---LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~---ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
|+|+||+++|+.+ .++|+++.||.+||++|++ ..+ +|+++|||||+||+|+|+.+ |++|+|++|++|++
T Consensus 1 MkItVKtl~g~~~-~IeV~~~~TV~dLK~kI~~--~~g~~~ip~~~QkLIy~GkiL~Dd~t-----L~dy~I~e~~~Ivv 72 (378)
T TIGR00601 1 MTLTFKTLQQQKF-KIDMEPDETVKELKEKIEA--EQGKDAYPVAQQKLIYSGKILSDDKT-----VREYKIKEKDFVVV 72 (378)
T ss_pred CEEEEEeCCCCEE-EEEeCCcChHHHHHHHHHH--hhCCCCCChhHeEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 7999999999988 9999999999999999998 777 99999999999999998888 99999999999999
Q ss_pred EEecC
Q 034173 87 SLFNL 91 (102)
Q Consensus 87 ~~~~~ 91 (102)
++.+.
T Consensus 73 mv~k~ 77 (378)
T TIGR00601 73 MVSKP 77 (378)
T ss_pred EeccC
Confidence 99875
No 25
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-17 Score=101.26 Aligned_cols=70 Identities=20% Similarity=0.388 Sum_probs=66.9
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
|.|+||+++++.+ .++++|+++|..+|+.|++ +.|+||.+|||||.|+.+.|+++ -++|++..|+.+|++
T Consensus 1 m~iKvktLt~KeI-eidIep~DkverIKErvEE--keGIPp~qqrli~~gkqm~DD~t-----A~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEI-EIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYAGKQMNDDKT-----AAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceE-EEeeCcchHHHHHHHHhhh--hcCCCchhhhhhhcccccccccc-----HHHhhhccceeEeeC
Confidence 6799999999999 9999999999999999999 99999999999999999999988 999999999999973
No 26
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.68 E-value=6.6e-17 Score=130.21 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=69.7
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.|+|+||+.++ +. .+.|+.++||.+||+.|+. ..++++++|+|||.||+|+|+++ |..|||+||.||||++
T Consensus 15 ~irV~Vkt~~d-k~-~~~V~~~ssV~qlKE~I~~--~f~a~~dqlvLIfaGrILKD~dT-----L~~~gI~Dg~TvHLVi 85 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KY-EVNVASDSSVLQLKELIAQ--RFGAPPDQLVLIYAGRILKDDDT-----LKQYGIQDGHTVHLVI 85 (493)
T ss_pred eeEEEEecCCc-ce-eEecccchHHHHHHHHHHH--hcCCChhHeeeeecCccccChhh-----HHHcCCCCCcEEEEEe
Confidence 49999999998 44 7999999999999999998 99999999999999999999999 9999999999999999
Q ss_pred ecC
Q 034173 89 FNL 91 (102)
Q Consensus 89 ~~~ 91 (102)
+..
T Consensus 86 k~~ 88 (493)
T KOG0010|consen 86 KSQ 88 (493)
T ss_pred ccC
Confidence 876
No 27
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.66 E-value=2.8e-16 Score=93.40 Aligned_cols=64 Identities=33% Similarity=0.577 Sum_probs=59.3
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCC
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGG 82 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ 82 (102)
|+|+||+.+ +.. .++|+++.||.+||++|++ ..++|+++|||+|+|+.|.|+.+ |++|||++|+
T Consensus 1 ~~i~vk~~~-~~~-~~~v~~~~tv~~lk~~i~~--~~~~~~~~~~L~~~g~~L~d~~t-----L~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTI-TLEVKPSDTVSELKEKIAE--LTGIPVEQQRLIYKGKVLEDDRT-----LADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceE-EEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCEECCCCCC-----HHHcCCcCCC
Confidence 689999998 555 8999999999999999998 99999999999999999988877 9999999985
No 28
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.66 E-value=2.7e-16 Score=105.92 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=69.3
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhcc---CCCCC--CCceEEEeCCeecCCCCCCCCCCccccC-----
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS---ANHLP--IENLRLVFRGKVLDDTQDDDDRDDVYLQ----- 77 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~---~~~ip--~~~qrLi~~Gk~L~D~~t~~~~~L~~~~----- 77 (102)
+.+.|++|-.+|.-+....+++++||.+||++|++.. +.++| +++|||||+||+|+|+.| |++|+
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~T-----L~d~~~p~g~ 77 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKT-----VGECRSPVGD 77 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCc-----HHHhCCcccc
Confidence 5799999999998888899999999999999998511 33444 999999999999999888 99999
Q ss_pred -CCCCCEEEEEEecC
Q 034173 78 -LSNGGNINISLFNL 91 (102)
Q Consensus 78 -I~~g~ti~l~~~~~ 91 (102)
+....|+||+++.+
T Consensus 78 ~~~~~~TmHvvlr~~ 92 (113)
T cd01814 78 IAGGVITMHVVVQPP 92 (113)
T ss_pred cCCCceEEEEEecCC
Confidence 77789999999876
No 29
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.65 E-value=1.9e-16 Score=100.06 Aligned_cols=53 Identities=28% Similarity=0.380 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHhccCC--CC-CCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 29 SPIKVRDLRKLIATSSAN--HL-PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 29 ~~~TV~~LK~~Ia~~~~~--~i-p~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.++||.+||++|++ +. ++ ++++|||||+||+|+|+.+ |++|||++|++||++.
T Consensus 19 ~~~TV~~LK~kI~~--~~~egi~~~dqQrLIy~GKiL~D~~T-----L~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAA--QLPDSLPDPELIDLIHCGRKLKDDQT-----LDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHH--hhccCCCChHHeEEEeCCcCCCCCCc-----HHHcCCCCCCEEEEEe
Confidence 35899999999998 74 46 5999999999999998888 9999999999999864
No 30
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.8e-16 Score=111.64 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=70.2
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|+||++.++.+ .+++.+++||..+|.+|++ +.+||+++|||||.|+.|+|..+ |++|+|+-.+|||++++
T Consensus 1 m~ifVk~l~~kti-~~eve~~~ti~~~Kakiq~--~egIp~dqqrlifag~qLedgrt-----lSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 1 MQIFVKTLTGKTI-TLEVEANDTIDNVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (156)
T ss_pred Cccchhhccccce-eeeecccccHHHHHHhhhc--ccCCCchhhhhhhhhcccccCCc-----cccccccccceEEEEEE
Confidence 6899999999988 8999999999999999988 99999999999999999999888 99999999999999997
Q ss_pred cC
Q 034173 90 NL 91 (102)
Q Consensus 90 ~~ 91 (102)
-.
T Consensus 73 l~ 74 (156)
T KOG0004|consen 73 LR 74 (156)
T ss_pred ec
Confidence 54
No 31
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.60 E-value=3.6e-15 Score=93.91 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=59.4
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecC-CCCCCCCCCccccCCC-CCCEEEEEE
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD-DTQDDDDRDDVYLQLS-NGGNINISL 88 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~-D~~t~~~~~L~~~~I~-~g~ti~l~~ 88 (102)
.|.=|...+.+. .+++++++||++||++|++ +.|+||++||| |.|+.|. |+.+ |++||++ +|+++||-+
T Consensus 4 ~~~~~~~~~~t~-~l~v~~~~TV~~lK~kI~~--~~gip~~~QrL-~~G~~L~dD~~t-----L~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 4 SVEDAQSHTVTI-WLTVRPDMTVAQLKDKVFL--DYGFPPAVQRW-VIGQRLARDQET-----LYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEeccccCCCeE-EEEECCCCcHHHHHHHHHH--HHCcCHHHEEE-EcCCeeCCCcCC-----HHHcCCCCCCCEEEEEe
Confidence 344455666676 8999999999999999999 99999999999 9999985 5567 9999999 889999864
No 32
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.56 E-value=6.2e-15 Score=114.24 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=70.5
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCC--CCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~--ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
|+|+||++.++.+ ++++.|+.||.++|++|+. ..| +|+++|+|||+||+|+|+.+ +.+|+|++++.|+||
T Consensus 1 m~lt~KtL~q~~F-~iev~Pe~tV~evK~kIet--~~g~dyP~~~QkLIy~GkiL~D~~t-----v~Eykv~E~~fiVvM 72 (340)
T KOG0011|consen 1 MKLTVKTLKQQTF-TIEVKPEDTVVEVKKKIET--EKGPDYPAEQQKLIYSGKILKDETT-----VGEYKVKEKKFIVVM 72 (340)
T ss_pred CeeEeeeccCcee-EeecCcchhHHHHHHHHHh--ccCCCCchhhheeeecceeccCCcc-----hhhhccccCceEEEE
Confidence 7899999999999 9999999999999999998 666 99999999999999999888 999999999999999
Q ss_pred EecC
Q 034173 88 LFNL 91 (102)
Q Consensus 88 ~~~~ 91 (102)
+...
T Consensus 73 lsK~ 76 (340)
T KOG0011|consen 73 LSKD 76 (340)
T ss_pred EecC
Confidence 9775
No 33
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.54 E-value=1.9e-14 Score=86.37 Aligned_cols=67 Identities=30% Similarity=0.450 Sum_probs=61.6
Q ss_pred EEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 14 vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
||..+|..+ .+++++++||.+||++|++ ..++|+++|+|+|+|+.|+|..+ |.+|++.+|++|++..
T Consensus 2 v~~~~~~~~-~~~~~~~~ti~~lK~~i~~--~~~~~~~~~~l~~~g~~l~d~~~-----l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTF-ELEVSPDDTVAELKAKIAA--KEGVPPEQQRLIYAGKILKDDKT-----LSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEE-EEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCcCCCCcCC-----HHHCCCCCCCEEEEEE
Confidence 677778777 8999999999999999998 89999999999999999988877 9999999999999864
No 34
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=5.4e-16 Score=104.02 Aligned_cols=74 Identities=22% Similarity=0.331 Sum_probs=68.5
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
|+|++++..|+++ .+++.|+.||..||.+|.. +.|+||++|||+|.||+|+|..| |++|||+-.+|||+.++
T Consensus 1 ~~~~~~~~~GKT~-~le~EpS~ti~~vKA~i~~--~~Gi~~~~~~L~~~~k~LED~~T-----la~Y~i~~~~Tl~~~~r 72 (128)
T KOG0003|consen 1 MQIFVKTLTGKTI-TLEVEPSDTIDNVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LADYNIQKESTLHLVLR 72 (128)
T ss_pred CcEEEEEeeCceE-EEEecccchHHHHHHHhcc--ccCCCHHHHHHHhcccccccCCc-----ccccCccchhhhhhhHH
Confidence 5688999999999 9999999999999999987 99999999999999999988888 99999999999998775
Q ss_pred cC
Q 034173 90 NL 91 (102)
Q Consensus 90 ~~ 91 (102)
-.
T Consensus 73 L~ 74 (128)
T KOG0003|consen 73 LR 74 (128)
T ss_pred Hh
Confidence 43
No 35
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.45 E-value=1.4e-13 Score=84.61 Aligned_cols=71 Identities=24% Similarity=0.425 Sum_probs=64.6
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~-~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
|+|+|++.+|+.+ .+.|.++.++..|++.+++ +.++|+ +.++|+|.|+.|.++.| +++++|++|++|+|.+
T Consensus 1 I~i~v~~~~~~~~-~~~v~~~~~~~~l~~~~~~--~~~i~~~~~~~l~fdG~~L~~~~T-----~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEI-KFKVKPTTTVSKLIEKYCE--KKGIPPEESIRLIFDGKRLDPNDT-----PEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEE-EEEEETTSCCHHHHHHHHH--HHTTTT-TTEEEEETTEEE-TTSC-----HHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHH--hhCCCccceEEEEECCEEcCCCCC-----HHHCCCCCCCEEEEEC
Confidence 7899999999877 8999999999999999999 999999 99999999999988888 9999999999999864
No 36
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.36 E-value=2.4e-12 Score=85.38 Aligned_cols=62 Identities=23% Similarity=0.152 Sum_probs=56.4
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEecC
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~ 91 (102)
.++|++++||.+||.+|.. ..++||+.|+|+|.|+.|. ||+++|++|||..|+.|+|.+.+|
T Consensus 18 ~L~V~~~~TVg~LK~lImQ--~f~V~P~dQkL~~dG~~L~----DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 18 ALLVSANQTLKELKIQIMH--AFSVAPFDQNLSIDGKILS----DDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred eEEeCccccHHHHHHHHHH--HhcCCcccceeeecCceec----cCCccHHhcCCCCCCEEEEEecCC
Confidence 6899999999999999988 9999999999999999885 344569999999999999999776
No 37
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.35 E-value=6.7e-12 Score=80.29 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-eCCe-----ecCCCCCCCCCCccccCCCCCCE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-FRGK-----VLDDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi-~~Gk-----~L~D~~t~~~~~L~~~~I~~g~t 83 (102)
++|.|++.......+..+++.+||.+||++++. ..|+||+.|||. |.|+ .|. +|+.+|.+|++++|.+
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~--~~G~~~~~mrL~l~~~~~~~~~~l~----~d~~~L~~y~~~dg~~ 75 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLEL--VVGTPASSMRLQLFDGDDKLVSKLD----DDDALLGSYPVDDGCR 75 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHH--HHCCCccceEEEEEcCCCCeEeecC----CCccEeeeccCCCCCE
Confidence 567777654333335669999999999999998 999999999994 8888 342 2334499999999999
Q ss_pred EEEEEecC
Q 034173 84 INISLFNL 91 (102)
Q Consensus 84 i~l~~~~~ 91 (102)
|||.=.+|
T Consensus 76 IhVvD~~p 83 (84)
T cd01789 76 IHVIDVSG 83 (84)
T ss_pred EEEEeCCC
Confidence 99865443
No 38
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=99.33 E-value=4.2e-12 Score=79.70 Aligned_cols=70 Identities=30% Similarity=0.416 Sum_probs=55.3
Q ss_pred EEEEEEcCCCCCceEEEe-cCCCcHHHHHHHHHhccCCC-CCCCceEEE--eCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 10 VEITVKTIGPAPPSRLSV-SSPIKVRDLRKLIATSSANH-LPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v-~~~~TV~~LK~~Ia~~~~~~-ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
++|.++..+.+.+..+++ ++++||.+||+.|++ ..+ +|++||||. +.|++|.|+.+ |++||+++|++||
T Consensus 1 ~~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~--~~~~~~~~Rqrl~~~~~g~~L~d~~t-----L~~~gv~~g~~ly 73 (77)
T cd01801 1 LEILDAKRSDKPIGKLKVSSGDATIADLKKLIAK--SSPQLTVNRQSLRLEPKGKSLKDDDT-----LVDLGVGAGATLY 73 (77)
T ss_pred CeeeccccCcCceeecccCCCCccHHHHHHHHHH--HcCCCCcceeEEEeCCCCcccCCccc-----HhhcCCCCCCEEE
Confidence 356666666344423444 478999999999997 654 789999994 89999988887 9999999999998
Q ss_pred E
Q 034173 86 I 86 (102)
Q Consensus 86 l 86 (102)
+
T Consensus 74 v 74 (77)
T cd01801 74 V 74 (77)
T ss_pred E
Confidence 7
No 39
>PLN02560 enoyl-CoA reductase
Probab=99.32 E-value=4.5e-12 Score=98.02 Aligned_cols=71 Identities=27% Similarity=0.344 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCCc--eEEEecCCCcHHHHHHHHHhccCCCC-CCCceEEEeC---C----eecCCCCCCCCCCccccCCC
Q 034173 10 VEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHL-PIENLRLVFR---G----KVLDDTQDDDDRDDVYLQLS 79 (102)
Q Consensus 10 i~I~vK~~~~~~~--~~l~v~~~~TV~~LK~~Ia~~~~~~i-p~~~qrLi~~---G----k~L~D~~t~~~~~L~~~~I~ 79 (102)
|+|+||..+|+.+ .++++++++||++||++|++ +.+. +++||||++. | +.|+|+++ |+++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk--~~~~~~~~RqRL~~~~~~gk~~g~~L~d~kt-----L~d~gv~ 73 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHK--RKKKYYPSRQRLTLPLPPGKTRPTVLDDSKS-----LKDYGLG 73 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHH--HcCCCChhheEEEEecCCCCcCccccCCCCC-----HHhcCCC
Confidence 6789998888876 47999999999999999998 7764 8999999973 3 37776666 9999999
Q ss_pred CCCEEEEE
Q 034173 80 NGGNINIS 87 (102)
Q Consensus 80 ~g~ti~l~ 87 (102)
+|++|++-
T Consensus 74 ~gstLy~k 81 (308)
T PLN02560 74 DGGTVVFK 81 (308)
T ss_pred CCceEEEE
Confidence 99998873
No 40
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.2e-11 Score=106.61 Aligned_cols=75 Identities=19% Similarity=0.391 Sum_probs=69.7
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
..|+||+++.... ++.+...+||.+||.+|.+ +.+|+.+.|||||+||+|.|+++ +.+|+| +|.+|||+-|
T Consensus 3 ~~v~vktld~r~~-t~~ig~q~ti~~~~d~~r~--~~ni~s~~qr~i~~grvl~~~k~-----vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTR-TFIIGAQMTIKEFKDHIRA--SVNIPSEKQRLIYQGRVLQDDKK-----VQEYNV-DGKVIHLVER 73 (1143)
T ss_pred cceeeeeccccee-EEEechHHHHHHHHHHHHH--hcccccccceeeecceeeccchh-----hhhccC-CCeEEEeecc
Confidence 3489999999887 9999999999999999998 99999999999999999999999 999999 9999999988
Q ss_pred cCCC
Q 034173 90 NLDD 93 (102)
Q Consensus 90 ~~~~ 93 (102)
.+-.
T Consensus 74 ppp~ 77 (1143)
T KOG4248|consen 74 PPPQ 77 (1143)
T ss_pred CCCC
Confidence 7643
No 41
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.17 E-value=4.3e-10 Score=66.61 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=66.2
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEecC
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~ 91 (102)
+++++..|+.. .+++.+..+|..+|.+|+. ..++|+..|++.+.|+.|.|..+ |.+|+|..+.++++..+.+
T Consensus 2 ~~~~~~~gk~~-~~~~~~~~~i~~~k~~i~~--~~~~~~~~q~~~~~~~~l~d~~~-----l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTI-TLEVSPSDTIEVVKAKIRD--KEGIPVDQQRLIFGGKPLEDGRT-----LADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEE-EEEecCCCHHHHHHHHHHh--hcCCCCeeEEEEECCEECcCCCc-----HHHhCCCCCCEEEEEEecC
Confidence 56778888888 8999999999999999998 99999999999999999998888 9999999999999987764
No 42
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.16 E-value=3.5e-10 Score=76.15 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=58.1
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCC-------CCCCCceEEEeCCeecCCCCCCCCCCccccCCCC
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSAN-------HLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN 80 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~-------~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~ 80 (102)
+.|.|+++-.+|+-+..+.+++++||.+||+.|.. .. -..+...||||.||.|+|+.+ |.++.+..
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~--~WP~d~~~~p~s~~~lRLI~~GriL~d~~t-----L~~~~~~~ 73 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWA--EWPEDWEERPKSPSDLRLIYAGRILEDNKT-----LSDCRLPS 73 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHH--SSSTTSSSTT-SGGGEEEEETTEEE-SSSB-----TGGGT--T
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHH--HCccccccCCCChhhEEEEeCCeecCCcCc-----HHHhCCCC
Confidence 35889999889984558999999999999999985 32 123566999999999998888 99999998
Q ss_pred CC------EEEEEEecC
Q 034173 81 GG------NINISLFNL 91 (102)
Q Consensus 81 g~------ti~l~~~~~ 91 (102)
|+ ++||+++..
T Consensus 74 ~~~~~~~~vmHlvvrp~ 90 (111)
T PF13881_consen 74 GETPGGPTVMHLVVRPN 90 (111)
T ss_dssp TSETT--EEEEEEE-SS
T ss_pred CCCCCCCEEEEEEecCC
Confidence 87 578888665
No 43
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.09 E-value=3.1e-10 Score=72.53 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=57.1
Q ss_pred EEEEEEcCCCC-CceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeC----CeecCCCCCCCCCCccccCCCCCCEE
Q 034173 10 VEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----GKVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 10 i~I~vK~~~~~-~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~----Gk~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
++|+|.....+ ...+..+++++||.+||++|+. ..|+|++.|||.+. +..... ..+|+.+|..||+++|.+|
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~--~~Gi~~~~m~L~l~~~~~~~~~~~-~~dd~~~L~~y~~~dg~~i 78 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEK--LTGIPPSDMRLQLKSDKDDSKIEE-LDDDDATLGSYGIKDGMRI 78 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHH--HHTS-TTTEEEEEE-TSSSSEEEE-SSGSSSBCCHHT-STTEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHH--HhCCCcccEEEEEEecCCCccccc-cCCCccEeecCCCCCCCEE
Confidence 67777765553 2337899999999999999999 99999999999876 222211 1234566999999999999
Q ss_pred EEEEecC
Q 034173 85 NISLFNL 91 (102)
Q Consensus 85 ~l~~~~~ 91 (102)
||.=.+|
T Consensus 79 ~V~D~~p 85 (87)
T PF14560_consen 79 HVVDTNP 85 (87)
T ss_dssp EEEE-T-
T ss_pred EEEeCCC
Confidence 9865554
No 44
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.04 E-value=6.3e-10 Score=75.32 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCC-------CCCCE
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-------SNGGN 83 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I-------~~g~t 83 (102)
.+|+...-.++..-+.+.++.||.+||++|+. -...||+.|||+..+.+|+|++| |++||+ +.-.+
T Consensus 2 dvFlmIrR~KTTiF~dakes~tVlelK~~ieg--I~k~pp~dQrL~kd~qvLeD~kT-----L~d~g~t~~~akaq~pA~ 74 (119)
T cd01788 2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEG--ILKRPPEDQRLYKDDQLLDDGKT-----LGDCGFTSQTARPQAPAT 74 (119)
T ss_pred ceEEEEEecceEEEeecCCcccHHHHHHHHHH--HhcCChhHheeecCceeeccccc-----HHHcCccccccccCCCCe
Confidence 45555555555446788999999999999998 88899999999988889988888 999999 77899
Q ss_pred EEEEEecCCCcee
Q 034173 84 INISLFNLDDLSF 96 (102)
Q Consensus 84 i~l~~~~~~~~~~ 96 (102)
|-|.++. +++.|
T Consensus 75 vgLa~r~-~d~~f 86 (119)
T cd01788 75 VGLAFRS-SDDTF 86 (119)
T ss_pred EEEEEec-CCCCc
Confidence 9999997 45544
No 45
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.92 E-value=2.3e-09 Score=68.30 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=44.0
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCC-CCCCCCccccCCCCCCEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ-DDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~-t~~~~~L~~~~I~~g~ti~l 86 (102)
+.|-|.|++++|-. .+++++++|+.+|+++|++ ..++|++.|.|.. .+...+.. ..++.+|+++||++||-|||
T Consensus 3 ~~milRvrS~dG~~--Rie~~~~~t~~~L~~kI~~--~l~~~~~~~~L~~-~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 3 SSMILRVRSKDGMK--RIEVSPSSTLSDLKEKISE--QLSIPDSSQSLSK-DRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ---EEEEE-SSEEE--EEEE-TTSBHHHHHHHHHH--HS---TTT---BS-SGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred ccEEEEEECCCCCE--EEEcCCcccHHHHHHHHHH--HcCCCCcceEEEe-cCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 46889999999954 6999999999999999999 9999999998843 23222111 23456799999999999997
Q ss_pred E
Q 034173 87 S 87 (102)
Q Consensus 87 ~ 87 (102)
.
T Consensus 78 ~ 78 (80)
T PF11543_consen 78 K 78 (80)
T ss_dssp -
T ss_pred e
Confidence 3
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.82 E-value=2.4e-08 Score=55.80 Aligned_cols=65 Identities=28% Similarity=0.310 Sum_probs=56.7
Q ss_pred cCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 16 TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 16 ~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
..++... .+.++++.|+.+||++|.+ +.+.++++|+|.+.|..+.+... +.++++.+|++|++..
T Consensus 4 ~~~~~~~-~~~~~~~~tv~~l~~~i~~--~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 4 LNDGKTV-ELLVPSGTTVADLKEKLAK--KLGLPPEQQRLLVNGKILPDSLT-----LEDYGLQDGDELVLVP 68 (69)
T ss_pred ecCCCEE-EEEcCCCCcHHHHHHHHHH--HHCcChHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEEe
Confidence 3355555 7888899999999999998 88899999999999999988777 7899999999999853
No 47
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.5e-06 Score=69.24 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCCceEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~-v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.+|.||-.+ +.+ .++ ++.++|+..||+++.. .++++|+|||+.++|+.++|+-. +...+|++|.+|+++=
T Consensus 4 ~~v~VKW~g-k~y-~v~~l~~d~t~~vlKaqlf~--LTgV~PeRQKv~vKGg~a~dd~~-----~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 4 DTVIVKWGG-KKY-PVETLSTDETPSVLKAQLFA--LTGVPPERQKVMVKGGLAKDDVD-----WGALQIKPNETLMMMG 74 (473)
T ss_pred ceEeeeecC-ccc-cceeccCCCchHHHHHHHHH--hcCCCccceeEEEeccccccccc-----ccccccCCCCEEEeec
Confidence 457777744 444 455 9999999999999999 99999999999999999977755 8999999999999764
No 48
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2e-05 Score=52.12 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=66.8
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
+-|+|+|+.-++... .+.|...+..+-|+...++ +.|++.+..|++|.|+.+.+.+| -.+++..+|+.|-+.
T Consensus 19 ~hi~LKV~gqd~~~~-~Fkikr~t~LkKLM~aYc~--r~Gl~~~s~RFlFdG~rI~~~~T-----P~~L~mEd~D~Iev~ 90 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVV-VFKIKRHTPLKKLMKAYCE--RQGLSMNSLRFLFDGQRIRETHT-----PADLEMEDGDEIEVV 90 (99)
T ss_pred ceEEEEEecCCCCEE-EEEeecCChHHHHHHHHHH--HcCCccceEEEEECCcCcCCCCC-----hhhhCCcCCcEEEEE
Confidence 457888887566555 7899999999999999999 99999999999999999999998 999999999999987
Q ss_pred EecC
Q 034173 88 LFNL 91 (102)
Q Consensus 88 ~~~~ 91 (102)
....
T Consensus 91 ~~q~ 94 (99)
T KOG1769|consen 91 QEQT 94 (99)
T ss_pred eecc
Confidence 6543
No 49
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.17 E-value=6.4e-06 Score=54.26 Aligned_cols=56 Identities=25% Similarity=0.435 Sum_probs=39.5
Q ss_pred EEEEcCCCCCceEEEec--CCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCC
Q 034173 12 ITVKTIGPAPPSRLSVS--SPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQD 67 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~--~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t 67 (102)
|+|+..++-.-..++++ ...||..||++|.+.......-.++||||+||.|.|...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~ 60 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTD 60 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccch
Confidence 44555443222356776 779999999999872223455666999999999988765
No 50
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2.4e-05 Score=61.62 Aligned_cols=59 Identities=25% Similarity=0.409 Sum_probs=53.1
Q ss_pred eEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 23 ~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.+++|+.+.+|.+||+.++. ..|+|+++.|+||.||.|.|+-+ ++.+.+.--+.+|+++
T Consensus 16 l~v~v~~~t~I~~lke~Vak--~~gvp~D~L~viFaGKeLs~~tt-----v~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 16 LPVEVDSDTSIFQLKEVVAK--RQGVPADQLRVIFAGKELSNDTT-----VQNCDLSQQSATHIML 74 (446)
T ss_pred eeEEEecCCCHHHHHHHHHH--hhCCChhheEEEEeccccccCce-----eecccccccchhhhhc
Confidence 37888999999999999998 99999999999999999988777 9988888778888884
No 51
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.4e-06 Score=52.16 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=59.1
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
+++.+...-|+.. .+...++.||.++|..||. ++|-.++...|---+.+++|.-+ |++|.|.+|-.+.+
T Consensus 2 iev~~nDrLGKKV-RvKCn~dDtiGD~KKliaa--QtGT~~~kivl~k~~~i~kd~I~-----L~dyeihdg~~lel 70 (73)
T KOG3493|consen 2 IEVVLNDRLGKKV-RVKCNTDDTIGDLKKLIAA--QTGTRPEKIVLKKWYTIFKDHIT-----LSDYEIHDGMNLEL 70 (73)
T ss_pred ceehhhhhcCceE-EEEeCCcccccCHHHHHHH--hhCCChhHhHHHhhhhhhhcccc-----eeeEEeccCccEEE
Confidence 5677777788887 7888999999999999999 99999999888766777888878 99999999976654
No 52
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.84 E-value=4.9e-05 Score=47.67 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCC---CC---ceEEE-eCCeecCCCCCCCCCCccccCCCCCC
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP---IE---NLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGG 82 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip---~~---~qrLi-~~Gk~L~D~~t~~~~~L~~~~I~~g~ 82 (102)
+.|+|...++..+ .+.++.+.+|++|...|.+ ..+.+ +. ..+|. -.|..|.++.+ |.++||.+|+
T Consensus 3 ~rVtv~~~~~~~~-Dl~lP~~vpv~~li~~l~~--~~~~~~~~~~~~~~~~L~~~~g~~L~~~~t-----L~~~gV~dGd 74 (79)
T PF08817_consen 3 CRVTVDAGNGRQV-DLALPADVPVAELIPELVE--LLGLPGDDPPGHGQWVLARAGGRPLDPDQT-----LADAGVRDGD 74 (79)
T ss_dssp EEEEEE-TT--EE-EEEEETTSBTTHHHHHHHH--HS---S---TT-E-EEEG-GGTEEEETTSB-----CGGGT--TT-
T ss_pred EEEEEEcCCCcEE-EEEcCCCCcHHHHHHHHHH--HhCCccCCCCCcceEEEEecCCcccCCcCc-----HhHcCCCCCC
Confidence 5677777655666 8999999999999999987 55442 22 35666 78999988888 9999999999
Q ss_pred EEEE
Q 034173 83 NINI 86 (102)
Q Consensus 83 ti~l 86 (102)
.++|
T Consensus 75 ~L~L 78 (79)
T PF08817_consen 75 VLVL 78 (79)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9987
No 53
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.81 E-value=0.00016 Score=45.05 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=61.6
Q ss_pred CCCCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEE--eCCeecCCCCCCCCCCccccCCCCC
Q 034173 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLV--FRGKVLDDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 5 ~~~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g 81 (102)
+....+.|.||.++|+.+ .-...++.||.+|.+-|.. ....+... .+|+ |--+.+.+.. +.+|.+.|+.++
T Consensus 2 ~~~~~~~I~vRlpdG~~l-~~~F~~~~tl~~l~~~v~~--~~~~~~~~~f~L~~~~Pr~~l~~~~---~~tl~e~~l~p~ 75 (82)
T PF00789_consen 2 EESDVVRIQVRLPDGSRL-QRRFPKSDTLQDLYDFVES--QLFSPEESDFELITAFPRRELTDED---SKTLEEAGLLPS 75 (82)
T ss_dssp STSSEEEEEEEETTSTEE-EEEEETTSBHHHHHHHHHH--HHHCTTTSSEEEEESSSTEECCSTT---TSBTCCCTTSSC
T ss_pred CCCCEEEEEEECCCCCEE-EEEECCcchHHHHHHHHHH--hcCCCCCccEEEEeCCCCcCCCccc---cccHHHhcCCCC
Confidence 456779999999999988 7899999999999999987 55555554 6775 6778885443 456999999999
Q ss_pred CEEEEE
Q 034173 82 GNINIS 87 (102)
Q Consensus 82 ~ti~l~ 87 (102)
.+|+|.
T Consensus 76 ~~l~v~ 81 (82)
T PF00789_consen 76 ATLIVE 81 (82)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999873
No 54
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.80 E-value=0.0002 Score=45.40 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=54.5
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC-----eecCCCCCCCCCCccccCCCCCCEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG-----KVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G-----k~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
|+|+||-.+.... .+.|.|-.+|..+|++|.. ..+++- .|||-|+- +.|.+..+ |++|||=..-.|
T Consensus 1 iqVtV~q~g~~dl-~l~vnPy~pI~k~K~kI~~--~~~~~g-~qrLsfQepgg~rqlL~s~~s-----LA~yGiFs~~~i 71 (80)
T cd01811 1 IQVTVEQTGYSDW-ILRVNPYSPIRKIKEKIRR--SRNCSG-LQRLSFQEPGGERQLLSSRKS-----LADYGIFSKTNI 71 (80)
T ss_pred CEEEeeecCCCce-EEEeCCcchHHHHHHHHHH--hhCccc-ceEEEeecCCccccccccccc-----HhhhcceeccEE
Confidence 5789998888777 8999999999999999987 777766 99999842 34455555 999999876555
Q ss_pred EEE
Q 034173 85 NIS 87 (102)
Q Consensus 85 ~l~ 87 (102)
.|+
T Consensus 72 ~ll 74 (80)
T cd01811 72 CLL 74 (80)
T ss_pred EEE
Confidence 544
No 55
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.66 E-value=3.9e-05 Score=50.86 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=45.5
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-CC-eecCCCCCCCCCCccccCC
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-RG-KVLDDTQDDDDRDDVYLQL 78 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~-~G-k~L~D~~t~~~~~L~~~~I 78 (102)
++++..-.++..-+...++.||.+||.+++. -..-|++.|||.. .- +.|.|.++ |.++|.
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~g--i~~~Pvn~qrL~kmd~eqlL~D~kt-----L~d~gf 64 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEG--ILKRPVNEQRLYKMDTEQLLDDGKT-----LGDCGF 64 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHH--HHhCCCcchheeecCHHHHhhccch-----hhhccc
Confidence 4455444444435788899999999999998 7778999999976 33 67777777 999954
No 56
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.60 E-value=0.0001 Score=56.29 Aligned_cols=71 Identities=23% Similarity=0.229 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCCceE-EEecCCCcHHHHHHHHHhccCCCCCCCceEE----EeCCeecCCCCCCCCCCccccCCCCCCEE
Q 034173 10 VEITVKTIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLRL----VFRGKVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 10 i~I~vK~~~~~~~~~-l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrL----i~~Gk~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
|+|++++.++..... ...+...||.|+++.|.. ...++.+.++|+ ..+|+.|.|+.+ |++|+..+|.||
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~-~~~k~~~~~~r~tlr~e~kgkpl~~~s~-----l~e~~~~s~~~i 74 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISA-KNLKITPYRIRLTLRVEPKGKPLIDNSK-----LQEYGDGSGATI 74 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHH-hhhccCccchhheeeccCCCccccchhH-----HHHhccCCCCEE
Confidence 567777777644433 455667899999988874 455676644443 358999988888 999999999988
Q ss_pred EE
Q 034173 85 NI 86 (102)
Q Consensus 85 ~l 86 (102)
++
T Consensus 75 ~v 76 (297)
T KOG1639|consen 75 YV 76 (297)
T ss_pred EE
Confidence 87
No 57
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=4.5e-05 Score=60.17 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=49.6
Q ss_pred CCcEEEEEEcCCCCCc-eEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCcccc
Q 034173 7 SESVEITVKTIGPAPP-SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYL 76 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~-~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~ 76 (102)
+..+++.+|+++.+.- ..+..+.+.||.+||..++.....+.-...|||||+||.|.|... |.+.
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qc-----l~d~ 72 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQC-----LTDW 72 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchh-----HHHH
Confidence 4568999999988765 245555679999999999874444444556999999999988777 6654
No 58
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.42 E-value=0.002 Score=40.27 Aligned_cols=74 Identities=9% Similarity=0.120 Sum_probs=57.2
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
...+|.||.++|+.+ .-..+++.||.+|.+-|.. ..+......+|+ |--+.+.+... +.+|.+.|+....+|.
T Consensus 3 ~~~~I~iRlPdG~ri-~~~F~~~~tl~~v~~~v~~--~~~~~~~~f~L~t~~Prk~l~~~d~--~~tL~e~gL~p~~~l~ 77 (80)
T smart00166 3 DQCRLQIRLPDGSRL-VRRFPSSDTLRTVYEFVSA--ALTDGNDPFTLNSPFPRRTFTKDDY--SKTLLELALLPSSTLV 77 (80)
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHH--cccCCCCCEEEEeCCCCcCCccccc--cCCHHHCCCCCceEEE
Confidence 357899999999988 7899999999999999965 555555667775 66667754311 3559999999988887
Q ss_pred E
Q 034173 86 I 86 (102)
Q Consensus 86 l 86 (102)
|
T Consensus 78 v 78 (80)
T smart00166 78 L 78 (80)
T ss_pred E
Confidence 6
No 59
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.16 E-value=0.0042 Score=44.48 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=50.6
Q ss_pred EEEEEEcCCCC----CceEEEecCCCcHHHHHHHHHhccCCCCCCCce-EEEe-CCeec--CCCCCCCCCCccccCCCCC
Q 034173 10 VEITVKTIGPA----PPSRLSVSSPIKVRDLRKLIATSSANHLPIENL-RLVF-RGKVL--DDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 10 i~I~vK~~~~~----~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~q-rLi~-~Gk~L--~D~~t~~~~~L~~~~I~~g 81 (102)
|+|+|++.+|. .+ .+++++++||.+|+..|.+ ..++++..| .|.+ .++.| .++.. ++.+.-.+.
T Consensus 1 i~Vlvss~~g~~lp~tl-~~~lp~~ttv~dL~~~l~~--~~~~~~~~~~~L~~~~n~~l~~~~~~~-----~s~l~~~~~ 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTL-SLSLPSTTTVSDLKDRLSE--RLPIPSSSQLYLTTNSNGQLSPSSDIP-----LSSLLSSSQ 72 (162)
T ss_pred CeEEEecCCCCCCCCeE-EeeCCCCCcHHHHHHHHHh--hcCCCccceeEEEEeCCCeeCCCcccc-----HHhhccCcC
Confidence 68999999994 44 7899999999999999998 888888874 4544 34455 23333 555554444
Q ss_pred C----EEEEEEecC
Q 034173 82 G----NINISLFNL 91 (102)
Q Consensus 82 ~----ti~l~~~~~ 91 (102)
+ +++|.++=+
T Consensus 73 ~~~~~~l~l~~rl~ 86 (162)
T PF13019_consen 73 DSDFITLRLSLRLR 86 (162)
T ss_pred CCCceEEEEEEecc
Confidence 3 455554433
No 60
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.10 E-value=0.0085 Score=38.33 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=59.5
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC--eecCCC---CCCCCCCccccCCCCC
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG--KVLDDT---QDDDDRDDVYLQLSNG 81 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G--k~L~D~---~t~~~~~L~~~~I~~g 81 (102)
+..++|-||.++|+.+ .-....+.||.+|..-|.. .+..++..+|+.+= |.+.+- ..+.+.+|++.||.+.
T Consensus 2 ~~~~~I~iRlp~G~Rl-~rrF~~~~tl~~l~~fv~~---~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s 77 (85)
T cd01774 2 PDTVKIVFKLPNGTRV-ERRFLFTQSLRVIHDFLFS---LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNS 77 (85)
T ss_pred CceEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHh---CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCc
Confidence 3568999999999988 7788899999999999964 45567889998655 777521 1233456999999998
Q ss_pred CEEEEE
Q 034173 82 GNINIS 87 (102)
Q Consensus 82 ~ti~l~ 87 (102)
.+|.|.
T Consensus 78 ~~L~V~ 83 (85)
T cd01774 78 EVLFVQ 83 (85)
T ss_pred cEEEEe
Confidence 888764
No 61
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.07 E-value=0.0048 Score=39.17 Aligned_cols=71 Identities=11% Similarity=0.221 Sum_probs=56.1
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCC---ceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE---NLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~---~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
++|-++--+|+.+ .+.++.-.+|+.|-..+.++.+..+++- ..|..-+++.|.++.. |.+|+|.+|+.+.+
T Consensus 7 VTvD~t~y~g~~y-DLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~k-----L~d~~IadGD~Lei 80 (81)
T COG5417 7 VTVDFTNYNGGTY-DLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDK-----LIDYQIADGDILEI 80 (81)
T ss_pred EEEEeEecCCceE-EEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCce-----EEeccccCCCEEEe
Confidence 3444556678777 8899999999999888887555555543 4788899999988887 99999999998865
No 62
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.04 E-value=0.01 Score=37.17 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
..+|.||.++|+.+ .-..+.+.|+.+|.+-|.. ..+ ......|+ |--|.+.++. -+.+|.+.|+.+..+|+|
T Consensus 4 ~~~i~iRlp~G~~~-~~~F~~~~tl~~v~~fV~~--~~~-~~~~f~L~t~fPrk~~~~~d--~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTL-KQTFKAREQLAAVRLFVEL--NTG-NGGPFTLMTPFPRKVFTEDD--MEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEE-EEEeCCCChHHHHHHHHHH--cCC-CCCCEEEEeCCCCeECCccc--ccCCHHHCCCCCceEEEE
Confidence 46889999999987 7788999999999999986 432 22446665 6777785432 135699999999988886
Q ss_pred E
Q 034173 87 S 87 (102)
Q Consensus 87 ~ 87 (102)
.
T Consensus 78 ~ 78 (79)
T cd01772 78 T 78 (79)
T ss_pred e
Confidence 3
No 63
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.83 E-value=0.018 Score=35.52 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=52.7
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
..+|.||.++|+.+ .-..+.++||.+|.+-|.. .. ......+|+ |--+.+.+. +.+.+|.+.|+.+ +++.+
T Consensus 2 ~t~i~iRlpdG~~~-~~~F~~~~tl~~l~~fv~~--~~-~~~~~f~L~t~~Pr~~~~~~--~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRL-EQRFNSTHKLSDVRDFVES--NG-PPAEPFTLMTSFPRRVLTDL--DYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHH--cC-CCCCCEEEEeCCCCccCCCC--CccCcHHHcCCcc-ceEEE
Confidence 46789999999987 7889999999999999975 33 235556665 566777553 2356699999994 55544
No 64
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.79 E-value=0.0033 Score=38.58 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=43.8
Q ss_pred CCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 17 IGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 17 ~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.++... .+.+.|+.++.++=+...+ +.++++++-.|.|+++.|+-+.+ +.-.|+-+|.++.+
T Consensus 4 ~~~rr~-~vkvtp~~~l~~VL~eac~--k~~l~~~~~~L~h~~k~ldlslp-----~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRF-KVKVTPNTTLNQVLEEACK--KFGLDPSSYDLKHNNKPLDLSLP-----FRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EE-EE---TTSBHHHHHHHHHH--HTT--GGG-EEEETTEEESSS-B-----HHHH---SS-EEEE
T ss_pred cCCcEE-EEEECCCCCHHHHHHHHHH--HcCCCccceEEEECCEEeccccc-----eeecCCCCCCEEeC
Confidence 355555 8899999999999999988 99999999999999999987777 89999999988764
No 65
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.006 Score=45.53 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=57.0
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-eCC-eecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-FRG-KVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi-~~G-k~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
++|.|-+........-.++++.||.+||.+++. ..|.+++..+|. |.| -...-..+.++..|..|+..+|-.||+.
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~--~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLEL--LTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhh--hhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 456666444332225678899999999999998 999999999984 655 1111122344566999999999999986
Q ss_pred EecC
Q 034173 88 LFNL 91 (102)
Q Consensus 88 ~~~~ 91 (102)
=.++
T Consensus 80 D~~~ 83 (234)
T KOG3206|consen 80 DSNA 83 (234)
T ss_pred ecCc
Confidence 5544
No 66
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.58 E-value=0.039 Score=34.86 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=59.2
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
..++|-||.++|+.. .-....++++.+|-.-|.. .+++++..+|+ |-=|.+.+. +.+.+|.+.|+....+|.
T Consensus 3 ~~~~i~iRlP~G~r~-~rrF~~t~~L~~l~~fv~~---~~~~~~~f~L~t~fPRk~~~~~--d~~~TL~e~gL~p~~~L~ 76 (80)
T cd01771 3 PISKLRVRTPSGDFL-ERRFLGDTPLQVLLNFVAS---KGYPIDEYKLLSSWPRRDLTQL--DPNFTLLELKLYPQETLI 76 (80)
T ss_pred CeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHh---cCCCCCCEEEecCCCCCCCcCC--CCCCcHHHcCCCCCcEEE
Confidence 357899999999987 7789999999999999975 47788888886 666777422 123569999999999998
Q ss_pred EE
Q 034173 86 IS 87 (102)
Q Consensus 86 l~ 87 (102)
|.
T Consensus 77 Ve 78 (80)
T cd01771 77 LE 78 (80)
T ss_pred EE
Confidence 74
No 67
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.56 E-value=0.036 Score=35.49 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=60.0
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.-+|-||.++|+.. .-....+.++.+|-.-+.. .+.+++...|+ |-=|.+.... -+.+|.+.|+.+..+|+|
T Consensus 5 ~t~i~vRlP~G~r~-~rrF~~~~~L~~v~~fv~~---~g~~~~~f~L~t~FPRr~~~~~d--~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 5 KARLMLRYPDGKRE-QIALPEQAKLLALVRHVQS---KGYPNERFELLTNFPRRKLSHLD--YDITLQEAGLCPQETVFV 78 (82)
T ss_pred eeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHh---cCCCCCCEEEecCCCCcccCCcc--cCCCHHHcCCCCCcEEEE
Confidence 46889999999988 7888889999999998874 46788888887 6666774332 235699999999999998
Q ss_pred EEe
Q 034173 87 SLF 89 (102)
Q Consensus 87 ~~~ 89 (102)
.-|
T Consensus 79 q~r 81 (82)
T cd01773 79 QER 81 (82)
T ss_pred ecC
Confidence 654
No 68
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.33 E-value=0.038 Score=34.74 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=50.6
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCC-CCCCceEEE--eCCeecCCCCCCCCCCccccCCCCC
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH-LPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~-ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g 81 (102)
..+|.||.++|+.+ ......+.||.+|.+-|.. ..+ .......|. |-.|.|.|. +.+|.+.|+.+.
T Consensus 4 ~t~iqiRlpdG~r~-~~rF~~~~tv~~l~~~v~~--~~~~~~~~~f~L~t~fP~k~l~~~----~~Tl~eagL~~s 72 (79)
T cd01770 4 TTSIQIRLADGKRL-VQKFNSSHRVSDVRDFIVN--ARPEFAARPFTLMTAFPVKELSDE----SLTLKEANLLNA 72 (79)
T ss_pred eeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHH--hCCCCCCCCEEEecCCCCcccCCC----CCcHHHCCCcCc
Confidence 46889999999998 7899999999999999986 432 223446664 677878543 556999999964
No 69
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.01 Score=44.35 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=52.0
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 18 GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 18 ~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.++.+ .+.++.-.|+.++|.++.+ +.+..+-.||+.|+|+.|-|... |.+++|..|..-.|-+
T Consensus 155 T~~d~-~lta~~~Dtv~eik~~L~A--aeg~D~~sQrif~Sg~~l~dkt~-----LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 155 TREDF-WLTAPHYDTVGEIKRALRA--AEGVDPLSQRIFFSGGVLVDKTD-----LEECKIEKGQRYVLQV 217 (231)
T ss_pred hhhhe-eecccCcCcHHHHHHHHHH--hhccchhhheeeccCCceecccc-----ceeeeecCCCEEEEEE
Confidence 34444 5677778999999999988 99999999999999999977766 9999999996544433
No 70
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.033 Score=36.63 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
-|.++|-..++..+ -+.+....+.+.|-...+. +.|-..+..|+.|.|+.+.-++| -.+++..+++.|..+
T Consensus 24 hinLkvv~qd~tel-fFkiKktT~f~klm~af~~--rqGK~m~slRfL~dG~rI~~dqT-----P~dldmEdnd~iEav 94 (103)
T COG5227 24 HINLKVVDQDGTEL-FFKIKKTTTFKKLMDAFSR--RQGKNMSSLRFLFDGKRIDLDQT-----PGDLDMEDNDEIEAV 94 (103)
T ss_pred ccceEEecCCCCEE-EEEEeccchHHHHHHHHHH--HhCcCcceeEEEEcceecCCCCC-----hhhcCCccchHHHHH
Confidence 35555556666666 7899999999999999988 89999999999999999987777 999999999877543
No 71
>PRK06437 hypothetical protein; Provisional
Probab=95.38 E-value=0.12 Score=31.38 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=40.4
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 18 GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 18 ~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
+++.. .++++.+.||.+|=+ ..+++++..-+..+|+++. .++-|++||.|.+.
T Consensus 9 g~~~~-~~~i~~~~tv~dLL~------~Lgi~~~~vaV~vNg~iv~----------~~~~L~dgD~Veiv 61 (67)
T PRK06437 9 GHINK-TIEIDHELTVNDIIK------DLGLDEEEYVVIVNGSPVL----------EDHNVKKEDDVLIL 61 (67)
T ss_pred CCcce-EEEcCCCCcHHHHHH------HcCCCCccEEEEECCEECC----------CceEcCCCCEEEEE
Confidence 44444 688888999998732 4568888888899999995 34468999999764
No 72
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.28 E-value=0.096 Score=32.49 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=41.4
Q ss_pred EEEEEEcC------CCCCceEEEecCCCcHHHHHHHHHhccCC-CCCC--CceEEEeCCeecCCCCCCCCCCccccCCCC
Q 034173 10 VEITVKTI------GPAPPSRLSVSSPIKVRDLRKLIATSSAN-HLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLSN 80 (102)
Q Consensus 10 i~I~vK~~------~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~-~ip~--~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~ 80 (102)
|+|+|+.. .|.....++++.++||.+|.+.+.+ .. ++.. ..-.+..+|+...++ .-|++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~--~~p~l~~~~~~~~vavN~~~v~~~----------~~l~d 69 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVA--KFPSLEEVRSCCVLALNEEYTTES----------AALKD 69 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHH--HChhHHHHhhCcEEEECCEEcCCC----------cCcCC
Confidence 67777753 2333236788889999999999976 43 1111 112355677776432 35899
Q ss_pred CCEEEE
Q 034173 81 GGNINI 86 (102)
Q Consensus 81 g~ti~l 86 (102)
||+|.+
T Consensus 70 gDeVai 75 (82)
T PLN02799 70 GDELAI 75 (82)
T ss_pred CCEEEE
Confidence 999876
No 73
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.27 E-value=0.052 Score=34.69 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=38.8
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCee
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV 61 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~ 61 (102)
.++|+++. .+ .+.|+++.+..+|.++|++ +.++|++..+|-|+...
T Consensus 4 vvKV~f~~----tI-aIrvp~~~~y~~L~~ki~~--kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 4 VVKVHFKY----TV-AIQVARGLSYATLLQKISS--KLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEEEE----EE-EEEcCCCCCHHHHHHHHHH--HhCCCchhcEEEeccCC
Confidence 45666653 45 8999999999999999999 99999999999997654
No 74
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.21 E-value=0.056 Score=33.85 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=44.7
Q ss_pred ecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCcccc-CCCCCCEEEEEEec
Q 034173 27 VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYL-QLSNGGNINISLFN 90 (102)
Q Consensus 27 v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~-~I~~g~ti~l~~~~ 90 (102)
|++..+|.++++.++.. ..-.+-....|.++|+.|+|... |.+. |+++|.++.+..++
T Consensus 1 v~~~d~v~dvrq~L~~~-~~t~~~Tn~~L~~~g~~L~~~~e-----l~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES-PETCYLTNFSLEHNGQRLDDFVE-----LSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhC-ccccceeEEEEEECCCccCCchh-----hhhhhCCCCCcEEEEEecC
Confidence 56788999999999972 22255566888999999977666 7776 48999999987554
No 75
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=95.06 E-value=0.39 Score=29.23 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=43.5
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
+|+|++..... .. .++++.+.||.+|-+++ +++++.-.+..+|+.+.. +.-+++||.|-+.
T Consensus 4 mm~v~vng~~~-~~-~~~~~~~~tv~~ll~~l------~~~~~~v~v~vNg~iv~~----------~~~l~~gD~Veii 64 (70)
T PRK08364 4 MIRVKVIGRGI-EK-EIEWRKGMKVADILRAV------GFNTESAIAKVNGKVALE----------DDPVKDGDYVEVI 64 (70)
T ss_pred EEEEEEecccc-ce-EEEcCCCCcHHHHHHHc------CCCCccEEEEECCEECCC----------CcCcCCCCEEEEE
Confidence 37777755432 23 67888999999986554 456677777899999843 3358999988763
No 76
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.48 E-value=0.29 Score=29.68 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=37.6
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCC----CCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHL----PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~i----p~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.++++.+.||.+|.+.+.+ ...- .....++..+|+.... +.-|++||.|.+.
T Consensus 19 ~~~~~~~~tv~~ll~~l~~--~~~~~~~~~~~~~~v~vNg~~v~~----------~~~l~~gD~v~i~ 74 (80)
T cd00754 19 ELELPEGATVGELLDALEA--RYPGLLEELLARVRIAVNGEYVRL----------DTPLKDGDEVAII 74 (80)
T ss_pred EEECCCCCcHHHHHHHHHH--HCchHHHhhhhcEEEEECCeEcCC----------CcccCCCCEEEEe
Confidence 6777778999999999987 4321 2334566778888852 2359999999874
No 77
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=94.38 E-value=0.35 Score=28.97 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=37.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
.+++..+.|+.+||.++.. .. =-+||+|=+.+++.. |++||.|++.-|
T Consensus 9 ~~~~~~~~tl~~lr~~~k~--~~------DI~I~NGF~~~~d~~----------L~e~D~v~~Ikk 56 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKP--DA------DIVILNGFPTKEDIE----------LKEGDEVFLIKK 56 (57)
T ss_pred EEEcCCCcCHHHHHHhhCC--CC------CEEEEcCcccCCccc----------cCCCCEEEEEeC
Confidence 4688899999999988754 22 267999998865544 899999987543
No 78
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=94.06 E-value=0.61 Score=29.79 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=33.4
Q ss_pred EEecC-CCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCC---C--CCCCccccCCCCCCEEEEEEecC
Q 034173 25 LSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQD---D--DDRDDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 25 l~v~~-~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t---~--~~~~L~~~~I~~g~ti~l~~~~~ 91 (102)
+.++. .+|+.+|-++|-. .+.|+.... +.+.|+.+-+... + -++.|+++||.+|+.+.+.=..+
T Consensus 2 v~~d~~~~TL~~lv~~Vlk-~~Lg~~~P~--v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~q 71 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLK-KKLGMNEPD--VSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFDQ 71 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCC-CCS--SSEE--EEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETTT
T ss_pred EEEechhCcHHHHHHHHHH-hccCCCCCE--EEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcCC
Confidence 44543 4899999988753 244444322 2225555533322 2 23789999999999888755544
No 79
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=93.80 E-value=0.15 Score=32.88 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCC---ceEEEe
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE---NLRLVF 57 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~---~qrLi~ 57 (102)
..++|+++|... .+.+.++..+.+|++.|++ +.|+..+ ...|-|
T Consensus 2 ~FK~~~~~Grvh-Rf~~~~s~~~~~L~~~I~~--Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRVH-RFRLRPSESLEELRTLISQ--RLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCEE-EEEecCCCCHHHHHHHHHH--HhCCccccCCcccEEE
Confidence 357889999887 8999999999999999998 9988874 566655
No 80
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=93.53 E-value=0.21 Score=30.61 Aligned_cols=46 Identities=28% Similarity=0.438 Sum_probs=35.8
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G 59 (102)
++|+++. ++... .+.++++.|..+|+.+|+. +.+.+....+|-|..
T Consensus 2 ~~vK~~~-~~~~~-~~~~~~~~s~~dL~~~i~~--~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY-GGETR-RLSVPRDISFEDLRSKVAK--RFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEE-CCEEE-EEEECCCCCHHHHHHHHHH--HhCCCCCCeEEEEEC
Confidence 4555655 44444 8999999999999999998 888877778887763
No 81
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=93.35 E-value=0.45 Score=29.55 Aligned_cols=68 Identities=22% Similarity=0.236 Sum_probs=47.4
Q ss_pred CCCCceEEEecCCCcHHHHHH-HHHhccCCCCCCCceEEE-eCCeecCCCCCCCCCCccccCCCCCCEEEEEEecC
Q 034173 18 GPAPPSRLSVSSPIKVRDLRK-LIATSSANHLPIENLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 18 ~~~~~~~l~v~~~~TV~~LK~-~Ia~~~~~~ip~~~qrLi-~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~ 91 (102)
+|+.. .++..+++..--+.+ .+.++...+-|++...|- -+|.+|+-++. +++||+.+|-+++++++..
T Consensus 4 NGqPv-~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kK-----veD~GftngvkLFLsLKAG 73 (76)
T PF10790_consen 4 NGQPV-QVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKK-----VEDFGFTNGVKLFLSLKAG 73 (76)
T ss_pred CCCce-eeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccch-----hhhccccccceEEEEeecc
Confidence 55555 566666655444433 344333456888888875 57888865555 9999999999999999863
No 82
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=92.56 E-value=0.14 Score=40.95 Aligned_cols=66 Identities=12% Similarity=0.193 Sum_probs=55.8
Q ss_pred eEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEecCCC
Q 034173 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNLDD 93 (102)
Q Consensus 23 ~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~~~ 93 (102)
.+++|..+.....|+..+.. ..+++.+..-|+|+++++.+.. ..+|..+|+++|+++.+--+..+.
T Consensus 15 ~~i~v~~dg~L~nl~aL~~~--d~g~~~~~~~li~n~~~l~s~~---s~~l~Q~g~~~~dsl~lr~ks~d~ 80 (380)
T KOG0012|consen 15 FPIPVTTDGELNNLAALCWK--DTGIVYDPSDLIYNPRPLVSNE---SQGLTQIGLKDGDSLALRCKSSDP 80 (380)
T ss_pred eccccccccchhhHHHHHHH--HhCcccchhhcccCCCccccch---hhhhhhcccccceeEeccCCCCCC
Confidence 37888999999999999988 9999999999999999996542 255999999999999876655544
No 83
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=92.53 E-value=1.3 Score=27.25 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=35.7
Q ss_pred EEEecCC-CcHHHHHHHHHhccCCC-CC--CCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 24 RLSVSSP-IKVRDLRKLIATSSANH-LP--IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 24 ~l~v~~~-~TV~~LK~~Ia~~~~~~-ip--~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.++++.+ .||.+|++.+.+ +.. +- ....++..+|+...+ +.-|++|++|.+
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~--~~p~l~~~~~~~~v~vn~~~v~~----------~~~l~dgDevai 73 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAK--EGPELAASRGQVMVAVNEEYVTD----------DALLNEGDEVAF 73 (80)
T ss_pred EEECCCCCcCHHHHHHHHHH--hCchhhhhccceEEEECCEEcCC----------CcCcCCCCEEEE
Confidence 6788876 899999999987 542 11 122456678887753 335999999876
No 84
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=92.09 E-value=0.24 Score=31.42 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=29.8
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEeC
Q 034173 18 GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFR 58 (102)
Q Consensus 18 ~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~-~~qrLi~~ 58 (102)
++... .+.++++.+..+|++.|++ +.++.. ....|-|.
T Consensus 8 ~~d~~-r~~l~~~~~~~~L~~~i~~--r~~~~~~~~f~LkY~ 46 (82)
T cd06407 8 GEEKI-RFRLPPSWGFTELKQEIAK--RFKLDDMSAFDLKYL 46 (82)
T ss_pred CCeEE-EEEcCCCCCHHHHHHHHHH--HhCCCCCCeeEEEEE
Confidence 44544 8999999999999999998 888765 55666553
No 85
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=91.63 E-value=1.2 Score=27.58 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=36.9
Q ss_pred EEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC
Q 034173 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (102)
Q Consensus 13 ~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G 59 (102)
.|=.++|+.. .+.+.|+.||.|+=+++.+ +.|+.++.-.+...|
T Consensus 3 ~V~LPng~~t-~V~vrpg~ti~d~L~~~c~--kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRT-VVPVRPGMSVRDVLAKACK--KRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeE-EEEECCCCCHHHHHHHHHH--HcCCCHHHEEEEEec
Confidence 4456788877 8999999999999999998 999999997776543
No 86
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=91.46 E-value=0.73 Score=27.93 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=45.1
Q ss_pred EEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEe----C--CeecCCCCCCCCCCccccCCC--CCCEE
Q 034173 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVF----R--GKVLDDTQDDDDRDDVYLQLS--NGGNI 84 (102)
Q Consensus 14 vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~-~~qrLi~----~--Gk~L~D~~t~~~~~L~~~~I~--~g~ti 84 (102)
|+.++|+.. .+++++++|+.+|=++|+. ..++.. +-.-|.| . ...|+.+++ |..+... .--++
T Consensus 1 V~llD~~~~-~~~v~~~~t~~~l~~~v~~--~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~-----l~~q~~~~~~~~~l 72 (80)
T PF09379_consen 1 VRLLDGTTK-TFEVDPKTTGQDLLEQVCD--KLGLKEKEYFGLQYQVDKDGEHHWLDLDKK-----LKKQLKKNNPPFTL 72 (80)
T ss_dssp EEESSEEEE-EEEEETTSBHHHHHHHHHH--HHTTSSGGGEEEEE-EBTTSSEEEE-SSSB-----GGGSTBTSSSSEEE
T ss_pred CCCcCCCcE-EEEEcCCCcHHHHHHHHHH--HcCCCCccEEEEEEeecCCCcceeccCccc-----HHHHcCCCCCCEEE
Confidence 456788776 8999999999999999998 777653 3366666 1 233444444 8888777 33345
Q ss_pred EEEE
Q 034173 85 NISL 88 (102)
Q Consensus 85 ~l~~ 88 (102)
++.+
T Consensus 73 ~frv 76 (80)
T PF09379_consen 73 YFRV 76 (80)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5444
No 87
>PRK07440 hypothetical protein; Provisional
Probab=91.25 E-value=1.3 Score=27.11 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=45.0
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+|+|+| +|+ .++++.+.||.+|-+ ..++++..--+.++|.++.-+. -.+.-+++||.|-+.
T Consensus 3 ~~m~i~v---NG~---~~~~~~~~tl~~lL~------~l~~~~~~vav~~N~~iv~r~~------w~~~~L~~gD~IEIv 64 (70)
T PRK07440 3 NPITLQV---NGE---TRTCSSGTSLPDLLQ------QLGFNPRLVAVEYNGEILHRQF------WEQTQVQPGDRLEIV 64 (70)
T ss_pred CceEEEE---CCE---EEEcCCCCCHHHHHH------HcCCCCCeEEEEECCEEeCHHH------cCceecCCCCEEEEE
Confidence 3577765 444 357788899988743 3457788888889999996332 355679999999765
Q ss_pred E
Q 034173 88 L 88 (102)
Q Consensus 88 ~ 88 (102)
-
T Consensus 65 ~ 65 (70)
T PRK07440 65 T 65 (70)
T ss_pred E
Confidence 3
No 88
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=91.24 E-value=1.1 Score=29.56 Aligned_cols=77 Identities=23% Similarity=0.222 Sum_probs=52.0
Q ss_pred CCceEEEecCCCcHHHHHHHHHhccCCCCCC-CceEE-EeCC---eecCCCCCCC---CCCccccCCCCCCEEEEEEecC
Q 034173 20 APPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRL-VFRG---KVLDDTQDDD---DRDDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 20 ~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~-~~qrL-i~~G---k~L~D~~t~~---~~~L~~~~I~~g~ti~l~~~~~ 91 (102)
.++.++.++.++||.||-.+++. +..++. ..-+| +..| |+|...+.+- .+-|...|.++.|-++. ...
T Consensus 12 ~Tf~Tls~~l~tTv~eli~~L~r--K~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l~~--lGr 87 (97)
T cd01775 12 GTFTTLSCPLNTTVSELIPQLAK--KFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDRIED--IGR 87 (97)
T ss_pred CcEEEEEcCCcCcHHHHHHHHHH--hhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCcHHH--hCc
Confidence 34558999999999999999987 877776 33444 3333 5664332100 02377788888888876 445
Q ss_pred CCceeeEec
Q 034173 92 DDLSFQFEF 100 (102)
Q Consensus 92 ~~~~~~~~~ 100 (102)
+|+||=+-|
T Consensus 88 eD~Syl~rF 96 (97)
T cd01775 88 EDNSFLCRF 96 (97)
T ss_pred ccceEEEEe
Confidence 689987766
No 89
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=90.94 E-value=0.84 Score=29.60 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=39.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--e--CCe-ecCCCCCCCCCCccccCCCCCCEEEEEEecCCC
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--F--RGK-VLDDTQDDDDRDDVYLQLSNGGNINISLFNLDD 93 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~--~Gk-~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~~~ 93 (102)
+-..+..+||..+...+.+ ...+ .+.-||- | ++. .|.+. +.+|++.+|.+|.+|.+-.+|.|+
T Consensus 17 t~~FSk~DTI~~v~~~~rk--lf~i-~~E~RLW~~~~~~~~e~L~~~----~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 17 TKQFSKTDTIGFVEKEMRK--LFNI-QEETRLWNKYSENSYELLNNP----EITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEE-TTSBHHHHHHHHHH--HCT--TS-EEEEEECTTTCEEEE--T----TSBTTTTT--TTEEEEEEE--TTS
T ss_pred HhhccccChHHHHHHHHHH--HhCC-CccceehhccCCcchhhhCCC----CccHHHccCcCCCEEEEEeeccCC
Confidence 5667888999999999988 8888 4556663 2 122 23222 234999999999999999999764
No 90
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=90.75 E-value=3.5 Score=28.67 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=35.1
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCC
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI 50 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~ 50 (102)
..+.|.|-.++|... .+.+++.+|+.++-+.++. +.|++.
T Consensus 2 ~~~~~~V~l~dg~~~-~~~~~~~~t~~ev~~~v~~--~~~l~~ 41 (207)
T smart00295 2 KPRVLKVYLLDGTTL-EFEVDSSTTAEELLETVCR--KLGIRE 41 (207)
T ss_pred CcEEEEEEecCCCEE-EEEECCCCCHHHHHHHHHH--HhCCCc
Confidence 457888899999887 8999999999999999999 888854
No 91
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=90.65 E-value=0.54 Score=28.74 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G 59 (102)
++|++...++... .+.++.+.|..+|+.+|++ ..+.+....+|-|..
T Consensus 2 ~~vK~~~~~~~~~-~~~~~~~~s~~~L~~~i~~--~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYGGDIRR-IISLPSDVSFDDLRSKIRE--KFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEEETTEEEE-EEEECSTSHHHHHHHHHHH--HHTTSTSSEEEEEEE
T ss_pred EEEEEEECCeeEE-EEEcCCCCCHHHHHHHHHH--HhCCCCccEEEEeeC
Confidence 5566666444332 4899999999999999998 888888888888854
No 92
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.58 E-value=1.1 Score=35.99 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=47.7
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe---CCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF---RGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~---~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
...+.-.-||.|||.++.. +-|+-+.+.||.| .||.-.-...+-+.-|-.|+|++||.+.+.
T Consensus 351 s~~I~~~~TV~D~~~~Ld~--~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDP--KVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred ceEEEeehHHHHHHHHhcc--ccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 4566667899999999988 9999999999987 444433333333466999999999998764
No 93
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=89.96 E-value=0.76 Score=29.81 Aligned_cols=59 Identities=10% Similarity=0.149 Sum_probs=41.5
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
...++-...+..||..++. +.++.-+.-.+..+...|.++++ |.+-+++-..+|.+++.
T Consensus 6 ~q~mDI~epl~~Lk~lLe~--Rl~~~L~~~~f~LQD~~L~~~k~-----L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 6 MQHMDIREPLSTLKKLLER--RLGISLSDYEFWLQDIQLEPHKS-----LVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEESSSBGGGHHHHSHH--HH-S--SS-EEEETTEE--TTSB-----TTTSS----SEEEEEEE
T ss_pred EEEEecCCcHHHHHHHHHH--hhCCCcCCCeEEeccceecCCcc-----HHHhhccccCEEEEEEE
Confidence 4566778889999999998 88888888888888888987777 99999999999988773
No 94
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=89.77 E-value=1.6 Score=25.92 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=38.7
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.++++..+||.+|.+++ +++++...+..+|+.+..+. -.+.-|++||+|.+.
T Consensus 8 ~~~~~~~~tv~~ll~~l------~~~~~~i~V~vNg~~v~~~~------~~~~~L~~gD~V~ii 59 (65)
T cd00565 8 PREVEEGATLAELLEEL------GLDPRGVAVALNGEIVPRSE------WASTPLQDGDRIEIV 59 (65)
T ss_pred EEEcCCCCCHHHHHHHc------CCCCCcEEEEECCEEcCHHH------cCceecCCCCEEEEE
Confidence 46788889999987665 35677788889999985432 233569999999764
No 95
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=89.35 E-value=1 Score=26.91 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=40.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC--CCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~--ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+.++...||.+|.+.+.. +.. .....-++..+|+...+ . -.+.-+++||+|.+.
T Consensus 15 ~~~~~~~~tv~~ll~~l~~--~~p~~~~~~~~~v~vN~~~v~~--~-----~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 15 EIEVPEGSTVRDLLEALAE--RYPELALRDRVAVAVNGEIVPD--D-----GLDTPLKDGDEVAIL 71 (77)
T ss_dssp EEEESSTSBHHHHHHHHCH--HTGGGHTTTTEEEEETTEEEGG--G-----TTTSBEETTEEEEEE
T ss_pred EEecCCCCcHHHHHHHHHh--hccccccCccEEEEECCEEcCC--c-----cCCcCcCCCCEEEEE
Confidence 5778889999999999976 331 12367888899999966 1 335568999999873
No 96
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=89.30 E-value=1.3 Score=27.76 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=26.5
Q ss_pred EEEEcCCCCCceEEEecC-CCcHHHHHHHHHhccCCCCCCC
Q 034173 12 ITVKTIGPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIE 51 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~-~~TV~~LK~~Ia~~~~~~ip~~ 51 (102)
|+.|..+.+....++++. ..+|.+||..|.++.+.|-..+
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~d 41 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKLGKGTD 41 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT---TTT
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHHhCCCcCCc
Confidence 466777777776788875 5899999999988334443333
No 97
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=88.54 E-value=2.4 Score=34.97 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe----CCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF----RGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~----~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
|-+.+|++.|.. .+++.++.+.+.|-.+|-.-...++.|++..+-- +|-+. ..++++++.++|+++|+.++
T Consensus 1 Mi~rfRsk~G~~--Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~---s~l~dqt~~dlGL~hGqmLy 75 (571)
T COG5100 1 MIFRFRSKEGQR--RVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIF---SLLKDQTPDDLGLRHGQMLY 75 (571)
T ss_pred CeEEEecCCCce--eeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceee---ecccccChhhhccccCcEEE
Confidence 346788989876 5899999999988877765345567888766642 34432 22455669999999999999
Q ss_pred EEE
Q 034173 86 ISL 88 (102)
Q Consensus 86 l~~ 88 (102)
|..
T Consensus 76 l~y 78 (571)
T COG5100 76 LEY 78 (571)
T ss_pred EEe
Confidence 987
No 98
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=88.48 E-value=0.14 Score=40.18 Aligned_cols=64 Identities=19% Similarity=0.464 Sum_probs=0.0
Q ss_pred CCcEEEEEEcCCCCCceEEEec---C--CCcHHHHHHHHHhcc---------CCCCCCCceE-----EEeCCeecCCCCC
Q 034173 7 SESVEITVKTIGPAPPSRLSVS---S--PIKVRDLRKLIATSS---------ANHLPIENLR-----LVFRGKVLDDTQD 67 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~---~--~~TV~~LK~~Ia~~~---------~~~ip~~~qr-----Li~~Gk~L~D~~t 67 (102)
+..|+|.+|++-+-.+ .+.++ + +.+|.++|..+++ + +.++|.+..+ |.|+-|.+.|.++
T Consensus 76 ~~sItV~Lks~rnp~l-~i~L~~~~plattSv~dlk~~v~~-rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~kt 153 (309)
T PF12754_consen 76 SKSITVHLKSLRNPPL-DISLPNVPPLATTSVQDLKDAVQQ-RVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKT 153 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEeecCCCCCc-eeEeCCCCcCCcCcHHHHHHHHHh-hhcccccccccccCCHHHhhhhhhhheecCccCCCcCc
Confidence 3569999998876555 44433 2 4789999999974 2 5678888877 9999999977777
Q ss_pred CCCCCccccC
Q 034173 68 DDDRDDVYLQ 77 (102)
Q Consensus 68 ~~~~~L~~~~ 77 (102)
|.+..
T Consensus 154 -----l~e~l 158 (309)
T PF12754_consen 154 -----LAEVL 158 (309)
T ss_dssp ----------
T ss_pred -----HHHHH
Confidence 66554
No 99
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=87.78 E-value=3.8 Score=25.12 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=44.2
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.|+|.+. |+ +++++...|+.+|= + ..+++++.--..++|.++..+. -.+.-+++||.|.+.
T Consensus 2 ~m~i~~n---g~---~~e~~~~~tv~dLL---~---~l~~~~~~vav~vNg~iVpr~~------~~~~~l~~gD~ievv 62 (68)
T COG2104 2 PMTIQLN---GK---EVEIAEGTTVADLL---A---QLGLNPEGVAVAVNGEIVPRSQ------WADTILKEGDRIEVV 62 (68)
T ss_pred cEEEEEC---CE---EEEcCCCCcHHHHH---H---HhCCCCceEEEEECCEEccchh------hhhccccCCCEEEEE
Confidence 3556554 44 46888889999983 3 4668888888899999995433 256679999988764
No 100
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=87.77 E-value=1.4 Score=26.60 Aligned_cols=45 Identities=29% Similarity=0.338 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCceEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEeCC
Q 034173 11 EITVKTIGPAPPSRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~-~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G 59 (102)
+|+++..+ ... .+.++ .+.|..+|+++|.+ +.+.+....+|-|..
T Consensus 2 ~vK~~~~~-~~~-~~~~~~~~~s~~~L~~~i~~--~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYGG-EIR-RFVVVSRSISFEDLRSKIAE--KFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEecC-CCE-EEEEecCCCCHHHHHHHHHH--HhCCCCCcEEEEeeC
Confidence 34555543 333 78888 89999999999998 888776667776654
No 101
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=87.61 E-value=3.9 Score=28.07 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=44.7
Q ss_pred EEEEEEcCCCCCce--EE-EecC-CCcHHHHHHHHHhcc--CCCCCCC------ceEEEeC---Ce------ecCCCC--
Q 034173 10 VEITVKTIGPAPPS--RL-SVSS-PIKVRDLRKLIATSS--ANHLPIE------NLRLVFR---GK------VLDDTQ-- 66 (102)
Q Consensus 10 i~I~vK~~~~~~~~--~l-~v~~-~~TV~~LK~~Ia~~~--~~~ip~~------~qrLi~~---Gk------~L~D~~-- 66 (102)
|.| ||+-.-..+. .+ .|+. +.||.+|++++.+.. ..+++|- ..+++++ .| .|+|++
T Consensus 3 VRl-IkSFeyRn~K~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~ 81 (122)
T PF10209_consen 3 VRL-IKSFEYRNVKNLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDW 81 (122)
T ss_pred EEE-EecccCCceeeeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcce
Confidence 444 5554444332 22 3666 789999998876522 3455554 4677642 22 122222
Q ss_pred ----CCCCCCccccCCCCCCEEEE
Q 034173 67 ----DDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 67 ----t~~~~~L~~~~I~~g~ti~l 86 (102)
.+++++|.++||.++..|-+
T Consensus 82 iL~~~~~~~tL~~~gv~nETEiSf 105 (122)
T PF10209_consen 82 ILDVSDDDKTLKELGVENETEISF 105 (122)
T ss_pred eeecCCCCCcHHHcCCCccceeee
Confidence 14667799999999877654
No 102
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=87.36 E-value=4.2 Score=25.17 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=34.7
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC-----C-C-----CCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANH-----L-P-----IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~-----i-p-----~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.++++ +.||.+|.+.+.+ +.. + + -...++..+|+....+. ..-|++|+.|.+.
T Consensus 19 ~v~~~-~~tv~~l~~~l~~--~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~--------~~~l~dgdev~i~ 82 (88)
T TIGR01687 19 EIEIE-GKTVGDLLNELMA--RYPKEFSELFKEGLGLVPNVIILVNGRNVDWGL--------GTELKDGDVVAIF 82 (88)
T ss_pred EEEeC-CCCHHHHHHHHHH--HCcHHHHHhCccCCcccccEEEEECCEecCccC--------CCCCCCCCEEEEe
Confidence 56666 8999999999987 432 1 0 12245567787774321 1468999998863
No 103
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=87.26 E-value=2.4 Score=35.68 Aligned_cols=84 Identities=11% Similarity=0.225 Sum_probs=50.1
Q ss_pred CcEEEEEEcCCC-CCceEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEe----CCe-ecCCCCCC----CC-
Q 034173 8 ESVEITVKTIGP-APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVF----RGK-VLDDTQDD----DD- 70 (102)
Q Consensus 8 ~~i~I~vK~~~~-~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip------~~~qrLi~----~Gk-~L~D~~t~----~~- 70 (102)
.+++|.|-..++ .....+.|=..+||.++|++|-++.-.+.| ++..-|.+ .|+ +|.|.... +.
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~w 267 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGW 267 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTE
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCc
Confidence 567777554332 222367777889999999999876555544 34444533 234 56654310 01
Q ss_pred ---CCccccCCCCCCEEEEEEecC
Q 034173 71 ---RDDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 71 ---~~L~~~~I~~g~ti~l~~~~~ 91 (102)
-||.+|+|.+|.+|-+.-+.-
T Consensus 268 krLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 268 KRLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp EE--BHHHHT--TTEEEEEEES--
T ss_pred eEeccHhhcCCCCCceEEEeeccc
Confidence 469999999999999877653
No 104
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=87.13 E-value=2.8 Score=24.74 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=38.1
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.++++.+.||.+|.+.+ +++++...+..+|+.+..+. -.++-|++||.|-+.
T Consensus 7 ~~~~~~~~tv~~ll~~l------~~~~~~v~v~vN~~iv~~~~------~~~~~L~~gD~veii 58 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL------GLDPRRVAVAVNGEIVPRSE------WDDTILKEGDRIEIV 58 (64)
T ss_pred EEEcCCCCcHHHHHHHc------CCCCCeEEEEECCEEcCHHH------cCceecCCCCEEEEE
Confidence 45778888999987655 35667778889999985332 234579999999764
No 105
>smart00455 RBD Raf-like Ras-binding domain.
Probab=86.61 E-value=5.4 Score=24.36 Aligned_cols=44 Identities=20% Similarity=0.106 Sum_probs=37.8
Q ss_pred EEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC
Q 034173 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (102)
Q Consensus 13 ~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G 59 (102)
.|=.++|+.. .+.+.|+.||.|+=+.+-+ +.|+.++.-.+...|
T Consensus 3 ~v~LP~~~~~-~V~vrpg~tl~e~L~~~~~--kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRT-VVKVRPGKTVRDALAKALK--KRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEE-EEEECCCCCHHHHHHHHHH--HcCCCHHHEEEEEcC
Confidence 3446788877 8999999999999999998 999999998888755
No 106
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=86.15 E-value=2.4 Score=25.27 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=40.0
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 18 GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 18 ~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
+|+. .+++++.|+.+| +. ..++++...-+.+++.++.-... +.+ +++||.|-+.
T Consensus 6 NG~~---~~~~~~~tl~~l---l~---~l~~~~~~vav~~N~~iv~r~~~------~~~-L~~gD~ieIv 59 (65)
T PRK05863 6 NEEQ---VEVDEQTTVAAL---LD---SLGFPEKGIAVAVDWSVLPRSDW------ATK-LRDGARLEVV 59 (65)
T ss_pred CCEE---EEcCCCCcHHHH---HH---HcCCCCCcEEEEECCcCcChhHh------hhh-cCCCCEEEEE
Confidence 5543 567788898887 33 45688899999999998865544 345 9999999764
No 107
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=85.45 E-value=4.9 Score=23.57 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=37.8
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.++++.+.||.+|=+ ..++++..--+.++|.++.-.. -.+.-+++||.|-+.
T Consensus 9 ~~~~~~~~tl~~lL~------~l~~~~~~vav~vNg~iv~r~~------~~~~~l~~gD~vei~ 60 (66)
T PRK05659 9 PRELPDGESVAALLA------REGLAGRRVAVEVNGEIVPRSQ------HASTALREGDVVEIV 60 (66)
T ss_pred EEEcCCCCCHHHHHH------hcCCCCCeEEEEECCeEeCHHH------cCcccCCCCCEEEEE
Confidence 357788889888742 4567888888889998885322 244569999999764
No 108
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=84.26 E-value=6.2 Score=23.26 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=36.2
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 18 GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 18 ~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
+|+.. +++ ..|+.+|.+.+ +++++...+..+++.+.-+. ..+.-+++||.|-+.
T Consensus 6 Ng~~~---~~~-~~tl~~Ll~~l------~~~~~~vavavN~~iv~~~~------~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 6 NGETL---QTE-ATTLALLLAEL------DYEGNWLATAVNGELVHKEA------RAQFVLHEGDRIEIL 59 (65)
T ss_pred CCeEE---EcC-cCcHHHHHHHc------CCCCCeEEEEECCEEcCHHH------cCccccCCCCEEEEE
Confidence 55543 443 46888887654 35556667789999985322 345679999999764
No 109
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=83.86 E-value=3.7 Score=25.35 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=31.7
Q ss_pred CcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 31 IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 31 ~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.|+.+|.+..++ +.+++ ..--+.-.|-.++|=.. |.||+.++++
T Consensus 26 ~SleeLl~ia~~--kfg~~-~~~v~~~dgaeIdDI~~----------IRDgD~L~~~ 69 (69)
T PF11834_consen 26 DSLEELLKIASE--KFGFS-ATKVLNEDGAEIDDIDV----------IRDGDHLYLV 69 (69)
T ss_pred ccHHHHHHHHHH--HhCCC-ceEEEcCCCCEEeEEEE----------EEcCCEEEEC
Confidence 599999999988 99987 44445555655544333 8899998873
No 110
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=82.04 E-value=9.5 Score=23.48 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=30.2
Q ss_pred EEEecC-CCcHHHHHHHHHhccCCC-----CCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 24 RLSVSS-PIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 24 ~l~v~~-~~TV~~LK~~Ia~~~~~~-----ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.+++++ .+||.+|++.+.+ +.. ......+...+++...+ +.-|++||.|-+
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~--~~~~~~~~~~~~~~~~aVN~~~~~~----------~~~l~dgDeVai 74 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQ--KGDRWALALEDGKLLAAVNQTLVSF----------DHPLTDGDEVAF 74 (81)
T ss_pred eEEecCCCCCHHHHHHHHHH--hCccHHhhhcCCCEEEEECCEEcCC----------CCCCCCCCEEEE
Confidence 355654 5899999999987 431 11222344445544321 225899998865
No 111
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=81.07 E-value=7.8 Score=24.62 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=43.8
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
+|+|+| +|+ ..+++.+.||.+|=+. .++++..--+.++|.++.-+. -++.-+++||.|.+.-
T Consensus 18 ~m~I~V---NG~---~~~~~~~~tl~~LL~~------l~~~~~~vAVevNg~iVpr~~------w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 18 LITISI---NDQ---SIQVDISSSLAQIIAQ------LSLPELGCVFAINNQVVPRSE------WQSTVLSSGDAISLFQ 79 (84)
T ss_pred eEEEEE---CCe---EEEcCCCCcHHHHHHH------cCCCCceEEEEECCEEeCHHH------cCcccCCCCCEEEEEE
Confidence 356654 555 3577888898877433 457777778889999995332 4667799999998754
No 112
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=79.85 E-value=3.4 Score=26.24 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=30.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G 59 (102)
.+.++++.+..+|.++|++ +...+++.-+|-|+-
T Consensus 10 ai~v~~g~~y~~L~~~ls~--kL~l~~~~~~LSY~~ 43 (78)
T cd06411 10 ALRAPRGADVSSLRALLSQ--ALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEccCCCCHHHHHHHHHH--HhcCChhhcEEEecC
Confidence 5788899999999999999 999999999998864
No 113
>PRK01777 hypothetical protein; Validated
Probab=79.18 E-value=15 Score=23.89 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=38.9
Q ss_pred cEEEEEEc--CCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCC-------ceEEEeCCeecCCCCCCCCCCccccCCC
Q 034173 9 SVEITVKT--IGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-------NLRLVFRGKVLDDTQDDDDRDDVYLQLS 79 (102)
Q Consensus 9 ~i~I~vK~--~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~-------~qrLi~~Gk~L~D~~t~~~~~L~~~~I~ 79 (102)
.|+|.|=. +.......+++++++||.++=+ ..|++.+ ...+.-.|+...- +.-++
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~------~sgi~~~~pei~~~~~~vgI~Gk~v~~----------d~~L~ 66 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIR------ASGLLELRTDIDLAKNKVGIYSRPAKL----------TDVLR 66 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHH------HcCCCccCcccccccceEEEeCeECCC----------CCcCC
Confidence 46666653 3333334788999999998743 3455444 2355567777742 34589
Q ss_pred CCCEEEE
Q 034173 80 NGGNINI 86 (102)
Q Consensus 80 ~g~ti~l 86 (102)
+||.|-+
T Consensus 67 dGDRVeI 73 (95)
T PRK01777 67 DGDRVEI 73 (95)
T ss_pred CCCEEEE
Confidence 9999875
No 114
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=78.53 E-value=2.2 Score=31.95 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=49.4
Q ss_pred CcEEEEEEcCCCCCc-----eEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeC----C--eecCCCCCCCCCCcccc
Q 034173 8 ESVEITVKTIGPAPP-----SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----G--KVLDDTQDDDDRDDVYL 76 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~-----~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~----G--k~L~D~~t~~~~~L~~~ 76 (102)
..+-||+|.-+...- +.+-|+.+.+|++|=..|.+ ..|+|++..-++|. + ..++...+ +...
T Consensus 67 ~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~--~~g~p~~t~l~lyEEi~~~~ie~i~~~~t-----~~~~ 139 (249)
T PF12436_consen 67 DDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINE--RAGLPPDTPLLLYEEIKPNMIEPIDPNQT-----FEKA 139 (249)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHH--HHT--TT--EEEEEEEETTEEEE--SSSB-----HHHT
T ss_pred CcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHH--HcCCCCCCceEEEEEeccceeeEcCCCCc-----hhhc
Confidence 458899995544432 23568899999999999998 99999987666652 2 33444445 9999
Q ss_pred CCCCCCEEEEEEecC
Q 034173 77 QLSNGGNINISLFNL 91 (102)
Q Consensus 77 ~I~~g~ti~l~~~~~ 91 (102)
.|.+||.|.+.....
T Consensus 140 el~~GdIi~fQ~~~~ 154 (249)
T PF12436_consen 140 ELQDGDIICFQRAPS 154 (249)
T ss_dssp T--TTEEEEEEE--G
T ss_pred ccCCCCEEEEEeccc
Confidence 999999999887654
No 115
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=78.42 E-value=14 Score=23.17 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=43.8
Q ss_pred cCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCe-ecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 16 TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK-VLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 16 ~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk-~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
-++|+.. .+.+.|+.||.++=.++-+ +.|+.++-=-+...|. ..-|+.+ +..+=.|..|.|-
T Consensus 6 LPdg~~T-~V~vrpG~ti~d~L~klle--kRgl~~~~~~vf~~g~~k~l~~~q-------D~~~L~~~El~vE 68 (73)
T cd01817 6 LPDGSTT-VVPTRPGESIRDLLSGLCE--KRGINYAAVDLFLVGGDKPLVLDQ-------DSSVLAGQEVRLE 68 (73)
T ss_pred CCCCCeE-EEEecCCCCHHHHHHHHHH--HcCCChhHEEEEEecCCcccccCC-------ccceeeccEEEEE
Confidence 4677776 7899999999999999988 9999988866655453 3334433 4445555555553
No 116
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=78.37 E-value=4 Score=26.03 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=38.5
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCC-------CCceEEEeCCe-ecCCCCCCC--CCCccccCCCCCCEEEEEE
Q 034173 25 LSVSSPIKVRDLRKLIATSSANHLP-------IENLRLVFRGK-VLDDTQDDD--DRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 25 l~v~~~~TV~~LK~~Ia~~~~~~ip-------~~~qrLi~~Gk-~L~D~~t~~--~~~L~~~~I~~g~ti~l~~ 88 (102)
+++++++|+.+|-+.+++ +..+. .+.-.|+.++- .|+. .|.. +++|.+. +.+|+.|+|.=
T Consensus 1 i~v~~~~TL~~lid~L~~--~~~~qlk~PSlt~~~k~LYm~~pp~Lee-~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCE--KPEFQLKKPSLTTANKTLYMQSPPSLEE-ATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHH--STTT--SS-EEESSEEEEEESSSHHHHH-HTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHh--ChhhhcCCCcccCCCceEEEeCCHHHHH-HhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 578999999999999998 54333 33345555443 1110 1111 2559999 99999998853
No 117
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=77.78 E-value=9.6 Score=24.55 Aligned_cols=46 Identities=9% Similarity=0.204 Sum_probs=33.4
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk 60 (102)
|+|+|-. .|... .+.|+++.+..+|.++|.+ +.++. ...++-|..-
T Consensus 3 ikVKv~~-~~Dv~-~i~v~~~i~f~dL~~kIrd--kf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHA-QDDTR-YIMIGPDTGFADFEDKIRD--KFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEEe-cCcEE-EEEcCCCCCHHHHHHHHHH--HhCCC-CceEEEEEcC
Confidence 4555554 44455 7999999999999999998 88874 4555555544
No 118
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=77.67 E-value=5.1 Score=25.03 Aligned_cols=62 Identities=18% Similarity=0.055 Sum_probs=34.9
Q ss_pred EEecCCCcHHHHHHHHHhccCC-CCCCCceEEEeCCeecCCCC--CCCCCCccccCCCCCCEEEEEEec
Q 034173 25 LSVSSPIKVRDLRKLIATSSAN-HLPIENLRLVFRGKVLDDTQ--DDDDRDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 25 l~v~~~~TV~~LK~~Ia~~~~~-~ip~~~qrLi~~Gk~L~D~~--t~~~~~L~~~~I~~g~ti~l~~~~ 90 (102)
.-.+++.|+.+|+..|.+ +. .++|....+. -..|+|.. -.|..-+..-=...+++|.+.+++
T Consensus 7 hlt~~~~tl~~L~~eI~~--~f~kLYP~~~~~~--I~~LQD~~~cDLD~d~~V~DVf~~~~~vrvi~~n 71 (73)
T PF10407_consen 7 HLTDPNNTLSQLKEEIEE--RFKKLYPNEPELE--ILSLQDSDGCDLDPDFLVKDVFNSNNVVRVILKN 71 (73)
T ss_pred EEeCCCCcHHHHHHHHHH--HHHHHCCCCCCce--EEEeecCCCCCCCcccEeeeeeccCCEEEEEecC
Confidence 346789999999999987 43 3555554432 23343322 111111222224577788877776
No 119
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=77.45 E-value=7.6 Score=31.41 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--eCCeecCCCCCCCCCCccccCCCCC
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi--~~Gk~L~D~~t~~~~~L~~~~I~~g 81 (102)
+-.|-||..+|+.+ ...+...-||.+++..|.. .+-+.+..-+-|+ |--|.|.| ++.||++.||.+-
T Consensus 305 tTsIQIRLanG~Rl-V~~fN~sHTv~DIR~fI~~-aRp~~~~~~F~L~~~FPpk~l~D----~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 305 TTSIQIRLANGTRL-VLKFNHSHTVSDIREFIDT-ARPGDSSTYFILMMAFPPKPLSD----DSQTLEEAGLLNS 373 (380)
T ss_pred cceEEEEecCCcee-eeeccCcccHHHHHHHHHh-cCCCCcCCceeeeecCCCcccCC----cchhHHhccchhh
Confidence 35677788899988 7788888999999999996 3333444456665 67777854 3345999999864
No 120
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=76.79 E-value=13 Score=22.00 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=38.5
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 18 GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 18 ~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
+|+ .++++.+.||.+|-+.+. ++...-.+..+++++.-+. -++.-+++||.|.+.
T Consensus 6 Ng~---~~~~~~~~tl~~ll~~l~------~~~~~vaVavN~~iv~r~~------w~~~~L~~gD~Ieii 60 (66)
T PRK08053 6 NDQ---PMQCAAGQTVHELLEQLN------QLQPGAALAINQQIIPREQ------WAQHIVQDGDQILLF 60 (66)
T ss_pred CCe---EEEcCCCCCHHHHHHHcC------CCCCcEEEEECCEEeChHH------cCccccCCCCEEEEE
Confidence 554 357788899999876553 3445577789999985332 244469999999764
No 121
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=76.69 E-value=6.2 Score=25.44 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=40.0
Q ss_pred ceEEEecC-----CCcHHHHHHHHHhccCCCCCC-CceEEEeCCeecCCC-CCCCCCCccc-----cCCCCCCEEEEEEe
Q 034173 22 PSRLSVSS-----PIKVRDLRKLIATSSANHLPI-ENLRLVFRGKVLDDT-QDDDDRDDVY-----LQLSNGGNINISLF 89 (102)
Q Consensus 22 ~~~l~v~~-----~~TV~~LK~~Ia~~~~~~ip~-~~qrLi~~Gk~L~D~-~t~~~~~L~~-----~~I~~g~ti~l~~~ 89 (102)
...+.++. +.+..+|+++|++ ..++++ ....|-|...-- |. ....+.+|.+ +.-....|+.+.|.
T Consensus 11 ~rRf~l~~~~~~~d~~~~~L~~kI~~--~f~l~~~~~~~l~Y~Dedg-d~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v~ 87 (91)
T cd06398 11 LRRFTFPVAENQLDLNMDGLREKVEE--LFSLSPDADLSLTYTDEDG-DVVTLVDDNDLTDAIQYFCSGSRLNPLRIDVT 87 (91)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHH--HhCCCCCCcEEEEEECCCC-CEEEEccHHHHHHHHHHHhccCCCceEEEEEE
Confidence 33677774 7999999999999 889887 567777754311 00 0112222332 23446777777664
No 122
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=76.68 E-value=9.4 Score=24.10 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=36.8
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-eCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi-~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.+.++..+||+++ |+ ..|+|...--+| -+|+... -+|-+++|+.|.|
T Consensus 26 ~~~~~~~~tvkd~---IE---sLGVP~tEV~~i~vNG~~v~----------~~~~~~~Gd~v~V 73 (81)
T PF14451_consen 26 THPFDGGATVKDV---IE---SLGVPHTEVGLILVNGRPVD----------FDYRLKDGDRVAV 73 (81)
T ss_pred EEecCCCCcHHHH---HH---HcCCChHHeEEEEECCEECC----------CcccCCCCCEEEE
Confidence 5778888999886 43 688998887776 5999883 2577999999876
No 123
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=76.56 E-value=7 Score=25.18 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=31.9
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEE
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRL 55 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrL 55 (102)
|+|-..+|... .+.|+..+|++++=+++++ +.++..+. ..|
T Consensus 5 vkv~~~Dg~sK-~l~V~~~~Ta~dV~~~L~~--K~h~~~~~~W~L 46 (85)
T cd01787 5 VKVYSEDGASK-SLEVDERMTARDVCQLLVD--KNHCQDDSSWTL 46 (85)
T ss_pred EEEEecCCCee-EEEEcCCCcHHHHHHHHHH--HhCCCCCCCeEE
Confidence 44456777777 8999999999999999998 88865544 444
No 124
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=75.45 E-value=19 Score=29.52 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCC----CCCCceEEE-eCCeecCCCCCCCCCCccccCCCCCCEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH----LPIENLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~----ip~~~qrLi-~~Gk~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
..|+|-.... .. .+.++.+..|.||--.|-+....+ -.+..-+|. ..|..|+.+.+ |.+.+|.||+.+
T Consensus 3 ~RVtV~~~~~-~~-DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~s-----L~~~gV~DG~~L 75 (452)
T TIGR02958 3 CRVTVLAGRR-AV-DVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDAS-----LAEAGVRDGELL 75 (452)
T ss_pred EEEEEeeCCe-ee-eeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCC-----HHHcCCCCCCeE
Confidence 3566666543 34 788899999999887776522111 123344553 58889977777 999999999999
Q ss_pred EEEEe
Q 034173 85 NISLF 89 (102)
Q Consensus 85 ~l~~~ 89 (102)
++.-.
T Consensus 76 ~L~p~ 80 (452)
T TIGR02958 76 VLVPA 80 (452)
T ss_pred EEeeC
Confidence 99753
No 125
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=75.16 E-value=28 Score=25.44 Aligned_cols=52 Identities=25% Similarity=0.203 Sum_probs=27.9
Q ss_pred cEEEEEEcCCCCCc--eEEEecCCCcHHHHHHHHHhccCCCCCCC---ceEE--EeCCeec
Q 034173 9 SVEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHLPIE---NLRL--VFRGKVL 62 (102)
Q Consensus 9 ~i~I~vK~~~~~~~--~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~---~qrL--i~~Gk~L 62 (102)
+|+|+.=..+-... ..+-|+.+.||.||-+.++. +.+++.+ ..|| ++++|..
T Consensus 20 ~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~--k~~~~~~~~~~lrl~ev~~~ki~ 78 (213)
T PF14533_consen 20 QFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQK--KVGFSEEGTGKLRLWEVSNHKIY 78 (213)
T ss_dssp -EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHT--T----TT----EEEEEEETTEEE
T ss_pred EEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHH--HcCCCcCCcCcEEEEEeECCEEE
Confidence 35555543332222 36778999999999999988 8888765 4555 4677764
No 126
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=74.84 E-value=5.5 Score=23.37 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=36.7
Q ss_pred EEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
|.|.+++|+. .+++.++|+.|+=..|.. .. .-.----..+|+.. --++-|++|++|.+.
T Consensus 1 I~v~lpdG~~---~~~~~g~T~~d~A~~I~~--~l--~~~~~~A~Vng~~v----------dl~~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSI---KELPEGSTVLDVAYSIHS--SL--AKRAVAAKVNGQLV----------DLDHPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCE---EEEETTBBHHHHHHHHSH--HH--HHCEEEEEETTEEE----------ETTSBB-SSEEEEEE
T ss_pred CEEECCCCCe---eeCCCCCCHHHHHHHHCH--HH--HhheeEEEEcCEEC----------CCCCCcCCCCEEEEE
Confidence 3455677764 579999999999888864 21 11112223567666 335568888888763
No 127
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=74.11 E-value=16 Score=29.14 Aligned_cols=79 Identities=16% Similarity=-0.007 Sum_probs=54.2
Q ss_pred EEEEEcCCCCCceEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 11 EITVKTIGPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~-~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
.|+.|..+.+.+..+..+. +.+|-|||..|-.+.+.|--.+=+-|+|+|..-+ +. -.+|.+-.-+|-+++-|
T Consensus 4 vI~YrFkSqkn~SRI~FdGTGl~vfdlKrEII~q~Klg~g~DFdLl~yn~~tnE--Ey-----dDd~fviprstsVIV~R 76 (427)
T COG5222 4 VINYRFKSQKNFSRISFDGTGLPVFDLKREIINQRKLGSGKDFDLLFYNGETNE--EY-----DDDYFVIPRSTSVIVSR 76 (427)
T ss_pred eeEEEeeccCCcceeEeccCCccHHHHHHHHHHhhhccCCccceEEEecCCccc--cc-----cCceEEEeccceEEEEe
Confidence 3566666666665677765 5899999987766455555567788899996654 22 34566777777777777
Q ss_pred cCCCcee
Q 034173 90 NLDDLSF 96 (102)
Q Consensus 90 ~~~~~~~ 96 (102)
-+.--||
T Consensus 77 ~Pa~kS~ 83 (427)
T COG5222 77 IPAWKSK 83 (427)
T ss_pred chhhhcc
Confidence 7766664
No 128
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=74.00 E-value=15 Score=21.33 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=34.5
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+++++++||.+|-+.+.. + ....+..+|+....+. -.+.-+++||+|.+.
T Consensus 9 ~~~~~~~~tl~~ll~~l~~------~-~~~~v~vN~~~v~~~~------~~~~~L~~gD~vei~ 59 (65)
T PRK06944 9 TLSLPDGATVADALAAYGA------R-PPFAVAVNGDFVARTQ------HAARALAAGDRLDLV 59 (65)
T ss_pred EEECCCCCcHHHHHHhhCC------C-CCeEEEECCEEcCchh------cccccCCCCCEEEEE
Confidence 4577888999998776632 2 2356678998885322 223359999999864
No 129
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=73.79 E-value=14 Score=22.16 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=39.4
Q ss_pred CCCCceEEEecCC-CcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 18 GPAPPSRLSVSSP-IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 18 ~~~~~~~l~v~~~-~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
+|+. .+++.+ .||.+|=+ ..++++..--+.++|+++.-+. -.+.-+++||.|.+.-
T Consensus 6 NG~~---~~~~~~~~tv~~lL~------~l~~~~~~vav~vN~~iv~r~~------w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 6 NGNQ---IEVPESVKTVAELLT------HLELDNKIVVVERNKDILQKDD------HTDTSVFDGDQIEIVT 62 (67)
T ss_pred CCEE---EEcCCCcccHHHHHH------HcCCCCCeEEEEECCEEeCHHH------cCceecCCCCEEEEEE
Confidence 5543 466666 67887643 3457788888889999996443 4556799999997753
No 130
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=73.53 E-value=8.7 Score=25.07 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=31.9
Q ss_pred EEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe
Q 034173 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF 57 (102)
Q Consensus 14 vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~ 57 (102)
++..+|.+- .+.|+.+.|..+|+.++++ ..+++.. ..|-|
T Consensus 17 l~Y~GG~tr-~i~V~r~~s~~el~~kl~~--~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETR-IVSVDRSISFKELVSKLSE--LFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceE-EEEEcCCCCHHHHHHHHHH--HhCCCCc-eEEEE
Confidence 466677776 7999999999999999999 7777765 55544
No 131
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=73.21 E-value=1.6 Score=26.77 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=13.3
Q ss_pred ccccCCCCCCEEEE
Q 034173 73 DVYLQLSNGGNINI 86 (102)
Q Consensus 73 L~~~~I~~g~ti~l 86 (102)
|...|+++||||.+
T Consensus 49 L~~~G~~~GD~V~I 62 (69)
T TIGR03595 49 LRKAGAKDGDTVRI 62 (69)
T ss_pred HHHcCCCCCCEEEE
Confidence 89999999999998
No 132
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=72.50 E-value=8.3 Score=24.57 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=26.0
Q ss_pred EEEEcCCCCCceEEEecC--CCcHHHHHHHHHhccCCCCC
Q 034173 12 ITVKTIGPAPPSRLSVSS--PIKVRDLRKLIATSSANHLP 49 (102)
Q Consensus 12 I~vK~~~~~~~~~l~v~~--~~TV~~LK~~Ia~~~~~~ip 49 (102)
|++.. +|... .+.+++ +.+..+|++.|+. ..+++
T Consensus 3 vKaty-~~d~~-rf~~~~~~~~~~~~L~~ev~~--rf~l~ 38 (81)
T cd06396 3 LKVTY-NGESQ-SFLVSDSENTTWASVEAMVKV--SFGLN 38 (81)
T ss_pred EEEEE-CCeEE-EEEecCCCCCCHHHHHHHHHH--HhCCC
Confidence 33433 44444 788988 7799999999998 88888
No 133
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=71.30 E-value=3.2 Score=25.30 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=13.1
Q ss_pred ccccCCCCCCEEEEEEecCCCceeeE
Q 034173 73 DVYLQLSNGGNINISLFNLDDLSFQF 98 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~~~~~~ 98 (102)
|...|+++||||.+ .+..|-|
T Consensus 49 L~~~G~~~GD~V~I-----g~~eFe~ 69 (69)
T PF09269_consen 49 LRKAGAKEGDTVRI-----GDYEFEY 69 (69)
T ss_dssp HHTTT--TT-EEEE-----TTEEEE-
T ss_pred HHHcCCCCCCEEEE-----cCEEEEC
Confidence 88999999999997 4555543
No 134
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=69.93 E-value=19 Score=21.93 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=31.0
Q ss_pred EEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE
Q 034173 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV 56 (102)
Q Consensus 13 ~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi 56 (102)
.|=-++++.. .+.+.++.||.|+=..+-+ +.++.++.-.+.
T Consensus 4 ~v~LP~~q~t-~V~vrpg~ti~d~L~~~~~--kr~L~~~~~~V~ 44 (71)
T PF02196_consen 4 RVHLPNGQRT-VVQVRPGMTIRDALSKACK--KRGLNPECCDVR 44 (71)
T ss_dssp EEEETTTEEE-EEEE-TTSBHHHHHHHHHH--TTT--CCCEEEE
T ss_pred EEECCCCCEE-EEEEcCCCCHHHHHHHHHH--HcCCCHHHEEEE
Confidence 3445777776 8999999999999999988 999999875554
No 135
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=68.56 E-value=20 Score=21.87 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=32.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHhccCCCCC--CCceEEE--e----CCeecCCCC
Q 034173 20 APPSRLSVSSPIKVRDLRKLIATSSANHLP--IENLRLV--F----RGKVLDDTQ 66 (102)
Q Consensus 20 ~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip--~~~qrLi--~----~Gk~L~D~~ 66 (102)
..+.++.|+.++|..++-+.+.+ +.++. +..-.|. . ..+.|.|++
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~--k~~l~~~~~~y~L~ev~~~~~~er~L~~~e 64 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLK--KFGLDDDPEDYALVEVLGDGGLERLLLPDE 64 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHH--HhCCcCCcccEEEEEEECCceEEEEeCCCC
Confidence 44448999999999999999988 88877 5555554 2 335665544
No 136
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=66.96 E-value=2.9 Score=32.77 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=39.3
Q ss_pred cCCCCCceEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCC
Q 034173 16 TIGPAPPSRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66 (102)
Q Consensus 16 ~~~~~~~~~l~v~-~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~ 66 (102)
..+|+.. .+.+. ....+..||.+++. ...++++-|++.+.|..|+|+.
T Consensus 289 ~~dg~~~-~~~~~~~~~~~~~~k~k~~~--~~~i~~~~q~~~~~~~~l~d~~ 337 (341)
T KOG0007|consen 289 PADGQVI-KITVQSLSENVASLKEKIAD--ESQIPANKQKLRGEGAFLKDNR 337 (341)
T ss_pred CCCCcee-eecccccccccccccccccc--ccccchhheeeccCCcccCccc
Confidence 3455554 56666 56789999999988 9999999999999999998773
No 137
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=65.75 E-value=10 Score=33.10 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=36.9
Q ss_pred cCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeec
Q 034173 16 TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62 (102)
Q Consensus 16 ~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L 62 (102)
..+...+ .+.++++.|+..|++.|.. .+|+|.+.|-|+|.|...
T Consensus 321 ~~~~~~~-~~~~~~~ntl~~~~~~I~~--~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSH-EYYVHADNTLHSLIERISK--QTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEE-EEecChhhhHHHHHHHHHH--hhCCCCccceeeeecCcc
Confidence 3344444 8899999999999999998 999999999999986544
No 138
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=64.06 E-value=32 Score=21.31 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=39.7
Q ss_pred EEEEEEcCCCCCc--eEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE------eCCeecCCCCCCCCCCccccCCCCC
Q 034173 10 VEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV------FRGKVLDDTQDDDDRDDVYLQLSNG 81 (102)
Q Consensus 10 i~I~vK~~~~~~~--~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi------~~Gk~L~D~~t~~~~~L~~~~I~~g 81 (102)
|.|+-|.++...- .++.++.++||.++=.+|.......+.-. ++ +.|+.. =.++.+++|
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A---~v~g~s~~~~gq~V----------gl~~~L~d~ 68 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYA---LVWGSSVKHSPQRV----------GLDHVLEDE 68 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCee---EEeccCCcCCCeEC----------CCCCEecCC
Confidence 6788887766432 26889999999999888763000111110 12 456555 234568889
Q ss_pred CEEEEE
Q 034173 82 GNINIS 87 (102)
Q Consensus 82 ~ti~l~ 87 (102)
|.|.+.
T Consensus 69 DvVeI~ 74 (75)
T cd01666 69 DVVQIV 74 (75)
T ss_pred CEEEEe
Confidence 888763
No 139
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=62.44 E-value=17 Score=27.27 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=32.6
Q ss_pred cEEEEEEcC---CCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE
Q 034173 9 SVEITVKTI---GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV 56 (102)
Q Consensus 9 ~i~I~vK~~---~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi 56 (102)
++.|.++-. .+..+ .+.++..+|-.+|-+.|++ ..+++|+..||.
T Consensus 176 rv~V~f~~~~~~~~~~F-~l~ls~~~tY~~la~~Va~--~l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEF-TLWLSKKMTYDQLAEKVAE--HLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---E-EEEEETT--HHHHHHHHHH--HHTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCE-EEEECCCCCHHHHHHHHHH--HHCCChHHEEEE
Confidence 567777742 22244 8899999999999999999 999999999995
No 140
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=62.21 E-value=35 Score=27.07 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=43.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEecCCCcee
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNLDDLSF 96 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~~~~~~ 96 (102)
.++++.+.||.+|-+ ..+++++..-+.++|+++.-+. -.++-|++||.|-+.-.-. +-||
T Consensus 9 ~~el~e~~TL~dLL~------~L~i~~~~VAVeVNgeIVpr~~------w~~t~LkeGD~IEII~~Vg-GGs~ 68 (326)
T PRK11840 9 PRQVPAGLTIAALLA------ELGLAPKKVAVERNLEIVPRSE------YGQVALEEGDELEIVHFVG-GGSD 68 (326)
T ss_pred EEecCCCCcHHHHHH------HcCCCCCeEEEEECCEECCHHH------cCccccCCCCEEEEEEEec-CCCC
Confidence 357788889888743 3567888899999999996333 3566799999998755432 3444
No 141
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=59.81 E-value=38 Score=20.77 Aligned_cols=56 Identities=29% Similarity=0.362 Sum_probs=37.4
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEE--e-CC--eecCCCC
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLV--F-RG--KVLDDTQ 66 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~--~~qrLi--~-~G--k~L~D~~ 66 (102)
.++|+.-...+....++.|++++|+.++=+.+.+ +.+++. +.-.|+ . .| +.|.++.
T Consensus 4 ~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~--k~~l~~~~~~y~L~e~~~~~~er~L~~~e 66 (90)
T smart00314 4 VLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLE--KFHLTDDPEEYVLVEVLPDGKERVLPDDE 66 (90)
T ss_pred EEEEecccCCCCcEEEEEECCCCCHHHHHHHHHH--HhCCCCCcccEEEEEEeCCcEEEEeCCCC
Confidence 3566554423334448999999999999999988 888764 455553 2 34 5665433
No 142
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=59.54 E-value=42 Score=21.15 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=44.5
Q ss_pred EEEEEEcCCCCCc-eEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-eCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 10 VEITVKTIGPAPP-SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 10 i~I~vK~~~~~~~-~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi-~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.+|+ .+.+.+.. ..++|++++....+-+-.++ +.++|+..=-+| -.|--+....+ -.+--++.|+.+.+
T Consensus 5 fKI~-ltsDp~~p~kv~sVPE~apftaVlkfaAe--eF~vp~~tsaiItndG~GInP~QT-----ag~vflKhGseLrl 75 (76)
T PF03671_consen 5 FKIT-LTSDPKLPYKVISVPEEAPFTAVLKFAAE--EFKVPPATSAIITNDGVGINPQQT-----AGNVFLKHGSELRL 75 (76)
T ss_dssp EEEE-ESTSSTS-EEEEEEETTSBHHHHHHHHHH--HTTS-SSSEEEEESSS-EE-TTSB-----HHHHHHHT-SEEEE
T ss_pred EEEE-EccCCCCcceEEecCCCCchHHHHHHHHH--HcCCCCceEEEEecCCcccccchh-----hhhhHhhcCcEeee
Confidence 4442 24444443 46899999888877777777 888988876666 46666666666 66667888887765
No 143
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=57.01 E-value=9.9 Score=26.82 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=21.7
Q ss_pred CCCCCCccccCCCCCCEEEEEEecCC
Q 034173 67 DDDDRDDVYLQLSNGGNINISLFNLD 92 (102)
Q Consensus 67 t~~~~~L~~~~I~~g~ti~l~~~~~~ 92 (102)
.+|+++|...+++-||.|.|++..+.
T Consensus 114 ~ddnktL~~~kf~iGD~lDVaI~~p~ 139 (151)
T KOG3391|consen 114 IDDNKTLQQTKFEIGDYLDVAITPPN 139 (151)
T ss_pred CCccchhhhCCccccceEEEEecCcc
Confidence 35566699999999999999998763
No 144
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=56.76 E-value=2.9 Score=32.27 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=48.4
Q ss_pred CCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCe------------------ec-CCCCCCCCCCccccCCC
Q 034173 19 PAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK------------------VL-DDTQDDDDRDDVYLQLS 79 (102)
Q Consensus 19 ~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk------------------~L-~D~~t~~~~~L~~~~I~ 79 (102)
|..+ .++++.+.+|.+.+..+.+ ...+.+...++++.+- ++ --+++--+..+...++.
T Consensus 12 gn~i-~ls~~~~~ri~D~~~~l~K--~~~vss~~~kll~~~llk~iahl~~p~mkEh~f~vti~~Dk~irnq~~sg~nvn 88 (278)
T KOG4842|consen 12 GNAI-YLSMAGSQRIPDKNPHLQK--VAVVSSKPNKLLALNLLKEIAHLVSPLMKEHHFKVTILVDKYIRNQRLSGMNVN 88 (278)
T ss_pred CcEE-EEEeccccccCCCCcccce--eeeeccchHHHHhhhhhhhhhhhhhhhhccccceeEEeehhHHHhhhhhccccC
Confidence 3344 6788888888888887765 6666666666665321 11 01111123457788999
Q ss_pred CCCEEEEEEecCCCceee
Q 034173 80 NGGNINISLFNLDDLSFQ 97 (102)
Q Consensus 80 ~g~ti~l~~~~~~~~~~~ 97 (102)
.|.++.++++ |...+|+
T Consensus 89 ~gski~lslr-~~~~e~~ 105 (278)
T KOG4842|consen 89 HGSKIMLSLR-CSTDEFQ 105 (278)
T ss_pred CcceEEEEee-ccccccc
Confidence 9999999999 5555554
No 145
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=56.19 E-value=47 Score=21.03 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=32.6
Q ss_pred EEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEE
Q 034173 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL 55 (102)
Q Consensus 14 vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrL 55 (102)
|=.++|... .+.|.+++|+.++=+.+.. +.++.|..--|
T Consensus 4 V~lPn~~~~-~v~vrp~~tv~dvLe~aCk--~~~ldp~eh~L 42 (77)
T cd01818 4 VCLPDNQPV-LTYLRPGMSVEDFLESACK--RKQLDPMEHYL 42 (77)
T ss_pred EECCCCceE-EEEECCCCCHHHHHHHHHH--hcCCChhHhee
Confidence 345677766 8899999999999999998 99999998544
No 146
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=55.70 E-value=15 Score=25.11 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=41.0
Q ss_pred EE-EecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCcccc---CCCCCCEEEEEEecCCCcee
Q 034173 24 RL-SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYL---QLSNGGNINISLFNLDDLSF 96 (102)
Q Consensus 24 ~l-~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~---~I~~g~ti~l~~~~~~~~~~ 96 (102)
.+ -|+.+.||+++...|.. +.+++++..=|..++..+..+.+ +.+. .=.+++.||+.... ++.|
T Consensus 43 KfllVP~d~tV~qF~~iIRk--rl~l~~~k~flfVnn~lp~~s~~-----mg~lYe~~KDeDGFLYi~Ys~--e~tF 110 (121)
T PTZ00380 43 HFLALPRDATVAELEAAVRQ--ALGTSAKKVTLAIEGSTPAVTAT-----VGDIADACKRDDGFLYVSVRT--EQAM 110 (121)
T ss_pred EEEEcCCCCcHHHHHHHHHH--HcCCChhHEEEEECCccCCccch-----HHHHHHHhcCCCCeEEEEEcc--cccc
Confidence 35 69999999999999988 89999998444445544433333 3321 22245578875543 4444
No 147
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=55.55 E-value=35 Score=21.90 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCC---C-ceEEEeCCe--ecCCCCCCCCCCccccC---
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---E-NLRLVFRGK--VLDDTQDDDDRDDVYLQ--- 77 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~---~-~qrLi~~Gk--~L~D~~t~~~~~L~~~~--- 77 (102)
++.+.|.|...+.+...++.++.+.|+.+|-.++-........+ + .-.|=-.|+ -|..+.+ |.+|.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~-----L~~y~yIr 88 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHP-----LSQYEYIR 88 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS------GGGBHHHH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCee-----eeccHHHH
Confidence 45688888888555555899999999999988876510111111 1 333323332 2333444 66663
Q ss_pred --CCCCCEEEEEEe
Q 034173 78 --LSNGGNINISLF 89 (102)
Q Consensus 78 --I~~g~ti~l~~~ 89 (102)
++.+..++|++.
T Consensus 89 ~cl~~~~~~~L~Lv 102 (106)
T PF00794_consen 89 QCLKRGKDPHLVLV 102 (106)
T ss_dssp HHHHCT--EEEEEE
T ss_pred HHHhcCCCcEEEEE
Confidence 556666776664
No 148
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=53.33 E-value=56 Score=20.72 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=45.7
Q ss_pred EEEEEEcCCCCCc---eEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCee-cC-CCCCCCCCCccccCCCCCCEE
Q 034173 10 VEITVKTIGPAPP---SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV-LD-DTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 10 i~I~vK~~~~~~~---~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~-L~-D~~t~~~~~L~~~~I~~g~ti 84 (102)
++|.+|..+.-.. ..+-|+.+.|+.++..-|.. +.++.+++--..|=+.. +. .+.+ =+.|-++- .+++.+
T Consensus 2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk--~L~l~~~~slflyvnn~f~p~~d~~--~g~LY~~~-~~dGfL 76 (87)
T cd01612 2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRK--RLKLKASDSLFLYINNSFAPSPDEN--VGNLYRCF-GTNGEL 76 (87)
T ss_pred eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHH--HhCCCccCeEEEEECCccCCCchhH--HHHHHHhc-CCCCEE
Confidence 4566665443322 14779999999999999987 88887776333444444 21 1111 13455555 677788
Q ss_pred EEEEe
Q 034173 85 NISLF 89 (102)
Q Consensus 85 ~l~~~ 89 (102)
++.-.
T Consensus 77 yi~Ys 81 (87)
T cd01612 77 IVSYC 81 (87)
T ss_pred EEEEe
Confidence 87543
No 149
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=53.26 E-value=53 Score=27.40 Aligned_cols=81 Identities=11% Similarity=0.151 Sum_probs=61.7
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEE--EeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrL--i~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
....|.||-++|..+ +-..+.+.-+..+++-+.. ..++.....-| -|--|...|++. +++|.++.+.+...|.
T Consensus 313 d~~rLqiRLPdGssf-te~Fps~~vL~~vr~yvrq--~~~i~~g~f~LatpyPRReft~eDy--~KtllEl~L~psaalv 387 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSF-TEKFPSTSVLRMVRDYVRQ--NQTIGLGAFDLATPYPRREFTDEDY--DKTLLELRLFPSAALV 387 (506)
T ss_pred ceeEEEEecCCccch-hhcCCcchHHHHHHHHHHh--cccccccceeeccccccccccchhh--hhhHHHhccCCcceEE
Confidence 357899999999998 7788888888999998876 66666665555 466677755533 5779999999998888
Q ss_pred EEEecCCC
Q 034173 86 ISLFNLDD 93 (102)
Q Consensus 86 l~~~~~~~ 93 (102)
|.-+....
T Consensus 388 vlpk~r~t 395 (506)
T KOG2507|consen 388 VLPKKRAT 395 (506)
T ss_pred EEecCCcc
Confidence 77666533
No 150
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=53.16 E-value=17 Score=22.83 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=15.5
Q ss_pred EEEecCCCcHHHHHHHHHh
Q 034173 24 RLSVSSPIKVRDLRKLIAT 42 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~ 42 (102)
.++++.++|+.++|+.+=+
T Consensus 3 ~l~~~~~~Tl~~iK~~lw~ 21 (78)
T PF02192_consen 3 PLRVSRDATLSEIKEELWE 21 (78)
T ss_dssp EEEEETT-BHHHHHHHHHH
T ss_pred EEEccCcCcHHHHHHHHHH
Confidence 6889999999999987754
No 151
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=53.11 E-value=18 Score=29.04 Aligned_cols=68 Identities=18% Similarity=0.065 Sum_probs=50.4
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC---eecCCCCCCCCCCccccCCCCCCE
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KVLDDTQDDDDRDDVYLQLSNGGN 83 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G---k~L~D~~t~~~~~L~~~~I~~g~t 83 (102)
.|.||.++|... ....-...+|.-|..-++. ...+.+-.+.+|+..- |.| |. .-+-+|.++||.+-.+
T Consensus 279 ~i~vR~pdG~R~-qrkf~~sepv~ll~~~~~s-~~dg~~k~~FkLv~a~P~~k~l-~~--~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRK-QRKFLKSEPVQLLWSFCYS-HMDGSDKKRFKLVQAIPASKTL-DY--GADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHH-HHhhccccHHHHHHHHHHH-hhcccccccceeeecccchhhh-hc--cccchHHHhccCcccc
Confidence 399999999887 4566777888888877664 3566888889998766 444 22 2255699999999775
No 152
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=51.64 E-value=39 Score=21.64 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCC
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G 59 (102)
+.++|..+. .- .+.++..-|-..|+++|.. -.++|++..-+.|-.
T Consensus 2 ~fKv~~~g~-~R-Rf~~~~~pt~~~L~~kl~~--Lf~lp~~~~~vtYiD 46 (82)
T cd06397 2 QFKSSFLGD-TR-RIVFPDIPTWEALASKLEN--LYNLPEIKVGVTYID 46 (82)
T ss_pred eEEEEeCCc-eE-EEecCCCccHHHHHHHHHH--HhCCChhHeEEEEEc
Confidence 345555443 33 6888888899999999998 999999887777743
No 153
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=49.09 E-value=34 Score=22.12 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=28.4
Q ss_pred CCCceEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEE
Q 034173 19 PAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLV 56 (102)
Q Consensus 19 ~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip-~~~qrLi 56 (102)
|....++.|+|.+|+.+|=+++|+ +.++. |+.-.|.
T Consensus 12 gct~KTL~V~P~~tt~~vc~lcA~--Kf~V~qPe~y~LF 48 (87)
T cd01776 12 GCTGKTLLVRPYITTEDVCQLCAE--KFKVTQPEEYSLF 48 (87)
T ss_pred CceeeeeecCCCCcHHHHHHHHHH--HhccCChhheeEE
Confidence 334448999999999999999998 87754 6666664
No 154
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.08 E-value=67 Score=25.12 Aligned_cols=74 Identities=5% Similarity=0.055 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc--eEEEeCCeecCCCCCCCCCCccccCCCCCCEEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN--LRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN 85 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~--qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~ 85 (102)
..-.|.||-++|+++ ..++++..|..+++..|.. ..+..++- ..-.|-=+.+.++. -.+.|..+++.+..+|.
T Consensus 209 s~crlQiRl~DG~Tl-~~tF~a~E~L~~VR~wVd~--n~~~~~~P~~f~t~fPR~tf~edD--~~KpLq~L~L~Psa~li 283 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTL-TQTFNARETLAAVRLWVDL--NRGDGLDPYSFHTGFPRVTFTEDD--ELKPLQELDLVPSAVLI 283 (290)
T ss_pred cceEEEEEcCCCCee-eeecCchhhHHHHHHHHHH--hccCCCCCeeeecCCCceeccccc--ccccHHHhccccchhee
Confidence 456788999999998 8899999999999999987 66544422 22223334443321 13669999999988776
Q ss_pred E
Q 034173 86 I 86 (102)
Q Consensus 86 l 86 (102)
+
T Consensus 284 l 284 (290)
T KOG2689|consen 284 L 284 (290)
T ss_pred c
Confidence 5
No 155
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=48.36 E-value=57 Score=19.62 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCC-CceEEEecCCCcHHHHHHHHHhccCCCC--CCCceEEE
Q 034173 9 SVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHL--PIENLRLV 56 (102)
Q Consensus 9 ~i~I~vK~~~~~-~~~~l~v~~~~TV~~LK~~Ia~~~~~~i--p~~~qrLi 56 (102)
.++|+....... ...++.|++.+|+.++=+++.+ +.++ .+....|.
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~--k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALE--KFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHH--HTTTSSSGGGEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHH--HhCCCCCCCCEEEE
Confidence 455655544322 2448999999999999999988 8887 45556673
No 156
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=47.99 E-value=20 Score=22.65 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=16.8
Q ss_pred EEEecCCCcHHHHHHHHHh
Q 034173 24 RLSVSSPIKVRDLRKLIAT 42 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~ 42 (102)
.++++.++|+.++|+.+-+
T Consensus 3 ~l~v~~~aTl~~IK~~lw~ 21 (78)
T smart00143 3 TLRVLREATLSTIKHELFK 21 (78)
T ss_pred eEEccccccHHHHHHHHHH
Confidence 6889999999999988865
No 157
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=46.92 E-value=28 Score=20.47 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=21.5
Q ss_pred ccccCCCCCCEEEEEEecCCCceeeEecC
Q 034173 73 DVYLQLSNGGNINISLFNLDDLSFQFEFG 101 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~~~~~~~~~ 101 (102)
|.++||..|..|.+.-+++-+.++-+.++
T Consensus 28 L~~lGl~~G~~i~v~~~~~~~~~~~i~~~ 56 (74)
T PF04023_consen 28 LADLGLTPGSEITVIRKNPFGGPVVIKVD 56 (74)
T ss_dssp HHHCT-STTEEEEEEEEETTSSEEEEEET
T ss_pred HHHCCCCCCCEEEEEEeCCCCCCEEEEEC
Confidence 88889999999998777766666666554
No 158
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=45.81 E-value=92 Score=21.18 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=53.7
Q ss_pred CcEEEEEEcCCCCCce---EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEE
Q 034173 8 ESVEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNI 84 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~---~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti 84 (102)
..+.|.+|..++-.+. .+.|+++.|++-+-..|.. ..++++..|-.+|=-.....+-...=++|-++-=.+|
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk--~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~~d~--- 103 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKK--FLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFGTDG--- 103 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHH--HhCCcccCeEEEEEcCccCCCchhHHHHHHHhcCCCC---
Confidence 4588989987776542 5789999999999999977 8999999998888555553221001144655554444
Q ss_pred EEEEecC
Q 034173 85 NISLFNL 91 (102)
Q Consensus 85 ~l~~~~~ 91 (102)
+|.+..|
T Consensus 104 ~Lvl~Yc 110 (116)
T KOG3439|consen 104 KLVLNYC 110 (116)
T ss_pred EEEEEEe
Confidence 5555555
No 159
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=43.96 E-value=60 Score=20.75 Aligned_cols=55 Identities=24% Similarity=0.214 Sum_probs=30.1
Q ss_pred EecCCCcHHHHHHHHHhccCCCCCCCceEEEeC-C------eecCCCCCCCCCCc--cccCCCCCCEEEE
Q 034173 26 SVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-G------KVLDDTQDDDDRDD--VYLQLSNGGNINI 86 (102)
Q Consensus 26 ~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~-G------k~L~D~~t~~~~~L--~~~~I~~g~ti~l 86 (102)
++...+||.+|=+.+++ .. ++.+.+|... | -+|-++.- -.-+ .++-+++||+|.+
T Consensus 24 ~~~~~~tV~dll~~L~~--~~--~~~~~~lf~~~g~lr~~i~VlvN~~d--i~~l~g~~t~L~dgD~v~i 87 (94)
T cd01764 24 DGEKPVTVGDLLDYVAS--NL--LEERPDLFIEGGSVRPGIIVLINDTD--WELLGEEDYILEDGDHVVF 87 (94)
T ss_pred cCCCCCcHHHHHHHHHH--hC--chhhhhhEecCCcccCCEEEEECCcc--ccccCCcccCCCCcCEEEE
Confidence 34356899999888876 33 4444444332 1 12211110 0113 3567999999876
No 160
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=43.58 E-value=78 Score=20.64 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=46.2
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhcc-C---CCCCCC-ceEEEeCCe--ecCCCCCCCCCCcccc---
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS-A---NHLPIE-NLRLVFRGK--VLDDTQDDDDRDDVYL--- 76 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~-~---~~ip~~-~qrLi~~Gk--~L~D~~t~~~~~L~~~--- 76 (102)
+..+.|.+...+.+...++.+++++|+.+|.+.+-... . ..-+++ .-.|=-.|+ -|..+.. |.+|
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~-----L~~~~yI 89 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHP-----LGSFEYI 89 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCee-----eechHHH
Confidence 45677777766545445899999999999988775410 0 112222 333333333 2333333 5554
Q ss_pred --CCCCCCEEEEEEecC
Q 034173 77 --QLSNGGNINISLFNL 91 (102)
Q Consensus 77 --~I~~g~ti~l~~~~~ 91 (102)
.++.|..++|++...
T Consensus 90 r~cl~~~~~~~L~L~~~ 106 (108)
T smart00144 90 RNCLKNGREPHLVLMTL 106 (108)
T ss_pred HHHHhcCCCceEEEEec
Confidence 367778888877643
No 161
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=43.13 E-value=42 Score=24.02 Aligned_cols=28 Identities=14% Similarity=0.066 Sum_probs=25.5
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
+.|+|++..++|..+ .+....++||.++
T Consensus 42 e~i~Itfv~~dG~~~-~i~g~vGdtlLd~ 69 (159)
T KOG3309|consen 42 EDIKITFVDPDGEEI-KIKGKVGDTLLDA 69 (159)
T ss_pred ceEEEEEECCCCCEE-EeeeecchHHHHH
Confidence 459999999999998 8999999999996
No 162
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=42.78 E-value=28 Score=23.60 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=29.4
Q ss_pred CCCcHHHHHHHHHhcc----CCCCCCCceEEEe-----------------CCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 29 SPIKVRDLRKLIATSS----ANHLPIENLRLVF-----------------RGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 29 ~~~TV~~LK~~Ia~~~----~~~ip~~~qrLi~-----------------~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.++|+.||=.+|.+.. +.+ .-=..+++| .|+... +++++|.+++..-||.|-++
T Consensus 45 ~d~TLrEL~~Lik~~~~~~r~~~-tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~----d~~kTL~~~~F~iGDyidva 119 (120)
T PF06487_consen 45 MDATLRELADLIKDVNPPARRRG-TRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGP----DDNKTLADLRFVIGDYIDVA 119 (120)
T ss_dssp TT-BHHHHHHHHHHH-HHHHSTT--EEEEEEEEECTTTTCEEEEEEEEEETTB--T----TTTSBCGGGT--TT-EEEEE
T ss_pred ccCCHHHHHHHHHHhCcccCCCC-CEEEEEEEeecCCCCceeeecCCeEECCCCCC----CcccCHhhCCcccCCEEEEe
Confidence 5699999988887622 111 000133333 333322 45566999999999999886
Q ss_pred E
Q 034173 88 L 88 (102)
Q Consensus 88 ~ 88 (102)
+
T Consensus 120 I 120 (120)
T PF06487_consen 120 I 120 (120)
T ss_dssp E
T ss_pred C
Confidence 5
No 163
>PF09014 Sushi_2: Beta-2-glycoprotein-1 fifth domain; InterPro: IPR015104 The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies []. ; PDB: 1C1Z_A 3OP8_B 2KRI_A 1QUB_A 1G4G_A 1G4F_A.
Probab=42.69 E-value=27 Score=22.50 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEecCCCceeeEe
Q 034173 46 NHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNLDDLSFQFE 99 (102)
Q Consensus 46 ~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~~~~~~~~~ 99 (102)
-.+|+.+=|.+|+|+.+.-. ++...+|..|++|.+-.+|.. ..=+|.
T Consensus 4 C~i~vkra~Vly~g~k~~i~------d~~~~~v~Hge~VsffCknke-kkCsy~ 50 (85)
T PF09014_consen 4 CKIPVKRARVLYNGEKVWIQ------DLFKNGVLHGEIVSFFCKNKE-KKCSYT 50 (85)
T ss_dssp B--SSSS-EEEETTEEEEHH------HHTTT-BETT-EEEEEEEETT-TTEEEE
T ss_pred cccceeEEEEEECCEEechh------hcccCceeeCCEEEEEEcCCc-ccCCCc
Confidence 45889999999999998421 155678999999999999873 455554
No 164
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=42.01 E-value=46 Score=21.53 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=35.1
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLR 54 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qr 54 (102)
++|.|=-++|..+ .+++..+++..++-+.++. +.++|.+..+
T Consensus 2 V~L~V~Lpdg~~i-~V~v~~s~~a~~Vleav~~--kl~L~~e~~~ 43 (87)
T cd01777 2 VELRIALPDKATV-TVRVRKNATTDQVYQALVA--KAGMDSYTQN 43 (87)
T ss_pred eEEEEEccCCCEE-EEEEEEcccHHHHHHHHHH--HhCCCHHHHh
Confidence 4566667788888 8999999999999999988 9999988744
No 165
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=40.25 E-value=44 Score=21.27 Aligned_cols=38 Identities=11% Similarity=0.264 Sum_probs=31.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCce-EEEeCCeecC
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENL-RLVFRGKVLD 63 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~q-rLi~~Gk~L~ 63 (102)
++.|++.+|=.++|+.|+. -.++++..- .+++.|+.-.
T Consensus 24 tF~V~~~atK~~Ik~aie~--iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 24 TFEVDPRATKTEIKEAIEK--IYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp EEEETTTSTHHHHHHHHHH--HHTSEEEEEEEEEETSEEEE
T ss_pred EEEEeCCCCHHHHHHHHHh--hcCCCeeEEEEeEeCCCceE
Confidence 7999999999999999998 888888774 4467877653
No 166
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.71 E-value=28 Score=29.22 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=48.6
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
.+..+...|=++|...|++ +.+++.+-.+.|-+||+|.-.+| |.+-|++....+.+.+.
T Consensus 53 l~k~sL~i~Gselqa~iak--klgi~enhvKci~~~Kils~~kt-----laeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAK--KLGIKENHVKCIINGKILSCRKT-----LAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHH--HcCCchhhhheeeccceeecccc-----hhhhhhhhhhHHHHHhc
Confidence 3555667888999999999 99999999999999999988788 99999887665544443
No 167
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=39.68 E-value=40 Score=28.93 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCcEEEEEEcCCCCCceEEEecCC---------CcHHHHHHHHHhccCCCCCCC
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSP---------IKVRDLRKLIATSSANHLPIE 51 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~---------~TV~~LK~~Ia~~~~~~ip~~ 51 (102)
.+.+.|+|+..+|+.. .+....+ .|+.+||.+|.+ +.|+..+
T Consensus 246 ~~~~~i~~~~~~g~~~-~~~~~~~~~~~~~~~f~~~~~l~~~~~~--~~~~~~~ 296 (603)
T PRK05841 246 NRKLNITIQKEDGKKE-DFVFTYGDAEKGENQFKTLGDLKKLLKE--KTGLDLN 296 (603)
T ss_pred CCeEEEEEecCCCcEE-EEEEeecCccccCCceeechhhhhhhhh--ccccccc
Confidence 3569999999988876 4444333 679999999998 8886654
No 168
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=39.48 E-value=44 Score=20.80 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=27.7
Q ss_pred cCCCcHHHHHHHHHhccCCCCCCCc---eE-E-EeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 28 SSPIKVRDLRKLIATSSANHLPIEN---LR-L-VFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 28 ~~~~TV~~LK~~Ia~~~~~~ip~~~---qr-L-i~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
....||.+|.+++.+ +....... ++ + ....+.+.+..+ -|++||+|.+
T Consensus 25 ~~~~tv~~L~~~l~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~t---------~L~dGDeVa~ 77 (84)
T COG1977 25 TVGATVGELEELLPK--EGERWLLALEDNIVVNAANNEFLVGLDT---------PLKDGDEVAF 77 (84)
T ss_pred cHHHHHHHHHHHHHh--hhhhHHhccCccceEEeeeceeeccccc---------cCCCCCEEEE
Confidence 345899999999876 44311111 12 1 122244443333 7999999976
No 169
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=39.31 E-value=58 Score=22.69 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=25.4
Q ss_pred CCcEEEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 7 ~~~i~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
+..++|+|...+|... +++++++.|+.+.
T Consensus 33 ~g~v~I~~~~~dG~~~-~v~~~~G~sLLea 61 (143)
T PTZ00490 33 PGKVKVCVKKRDGTHC-DVEVPVGMSLMHA 61 (143)
T ss_pred CCcEEEEEEcCCCCEE-EEEECCCccHHHH
Confidence 4679999999999887 8999999998885
No 170
>COG1153 FwdD Formylmethanofuran dehydrogenase subunit D [Energy production and conversion]
Probab=39.03 E-value=14 Score=25.48 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=14.5
Q ss_pred CCccccCCCCCCEEEEEE
Q 034173 71 RDDVYLQLSNGGNINISL 88 (102)
Q Consensus 71 ~~L~~~~I~~g~ti~l~~ 88 (102)
.++..+|+++||+|.|.-
T Consensus 38 ~D~~~Lgv~EGD~VkVks 55 (128)
T COG1153 38 EDMKQLGVSEGDKVKVKS 55 (128)
T ss_pred HHHHHhCCCcCCeEEEEe
Confidence 457888999999998754
No 171
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=38.96 E-value=66 Score=21.18 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=37.7
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEeCCeecCCCCCCCCCCccc----cCCCCCCEEEEEEec
Q 034173 25 LSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRGKVLDDTQDDDDRDDVY----LQLSNGGNINISLFN 90 (102)
Q Consensus 25 l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrLi~~Gk~L~D~~t~~~~~L~~----~~I~~g~ti~l~~~~ 90 (102)
+=|+.+.||.+|...|.. +.++++++ .=|..++..+..+.+ +.+ |. .+++.||+....
T Consensus 37 fLvp~~~tv~qf~~~ir~--rl~l~~~~alfl~Vn~~lp~~s~t-----m~elY~~~k-deDGFLY~~Ys~ 99 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRK--RLQLSPEQALFLFVNNTLPSTSST-----MGELYEKYK-DEDGFLYMTYSS 99 (104)
T ss_dssp EEEETTSBHHHHHHHHHH--HTT--TTS-EEEEBTTBESSTTSB-----HHHHHHHHB--TTSSEEEEEES
T ss_pred EEEcCCCchhhHHHHhhh--hhcCCCCceEEEEEcCcccchhhH-----HHHHHHHhC-CCCCeEEEEecc
Confidence 568999999999999987 88887775 555566655544444 543 23 345577776544
No 172
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=38.67 E-value=47 Score=23.25 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~ 52 (102)
++|.++......-..+.|+.+.|..+|=..|.. ..+..-..
T Consensus 7 lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~--afgw~~~H 47 (179)
T PF07929_consen 7 LKVSLKGSKPPIWRRIEVPADITLADLHEVIQA--AFGWDDDH 47 (179)
T ss_dssp EEEEETT-SS-EEEEEEEETT-BHHHHHHHHHH--HTT----S
T ss_pred EEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHH--HhCcCCCE
Confidence 455555544444568999999999999999987 66665443
No 173
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=36.64 E-value=78 Score=26.99 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=37.8
Q ss_pred EEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCC--CCCccccCCCCCCEEEEEE
Q 034173 24 RLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDD--DRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 24 ~l~v~~-~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~--~~~L~~~~I~~g~ti~l~~ 88 (102)
.+.+.. ..|+.+|-.+|-. .+.++.|+- .|.+ .+.+.|...+| +++|++.||.+|+-|.+.-
T Consensus 446 ~l~ln~~~~~~~~L~D~ivk-~r~~~~pdv-sll~-~~Li~~~d~e~n~~k~lsel~i~ngsli~~~~ 510 (603)
T KOG2013|consen 446 VLELNTRKSTLRDLVDKIVK-TRLGYLPDV-SLLD-DDLIDDMDFEDNLDKTLSELGILNGSLINVKD 510 (603)
T ss_pred EEEeccccchHHHHHHHHHH-HHhccCccc-chhh-hhhcccccchhhhhhhHHhhCCCCCceEeeec
Confidence 344543 4789999888764 356666643 2323 33333333322 3889999999999666544
No 174
>PRK11347 antitoxin ChpS; Provisional
Probab=35.11 E-value=34 Score=21.59 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.4
Q ss_pred ccccCCCCCCEEEEEEec
Q 034173 73 DVYLQLSNGGNINISLFN 90 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~ 90 (102)
+..++++.|++|.+.+.+
T Consensus 21 l~~l~l~~G~~v~i~v~~ 38 (83)
T PRK11347 21 MKELNLQPGQSVEAQVSN 38 (83)
T ss_pred HHHcCCCCCCEEEEEEEC
Confidence 778899999999988865
No 175
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=34.78 E-value=1.1e+02 Score=19.61 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=31.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceE-EEeCCeec
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLR-LVFRGKVL 62 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qr-Li~~Gk~L 62 (102)
.+.|++.+|=.++|+.|+. -.++++..-+ ++..|+.-
T Consensus 24 ~F~V~~~a~K~eIK~aie~--lf~VkV~~VnT~~~~gk~k 61 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEK--LFGVKVESVNTLNVKGKTK 61 (92)
T ss_pred EEEECCCCCHHHHHHHHHH--HcCCceeEEEEEEeCCcee
Confidence 8999999999999999998 8898888744 45676654
No 176
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=34.62 E-value=1e+02 Score=18.23 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=36.1
Q ss_pred EEEEEEcCCC--CCc-eEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecC
Q 034173 10 VEITVKTIGP--APP-SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (102)
Q Consensus 10 i~I~vK~~~~--~~~-~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~ 63 (102)
+.|.+.+..+ ... ..+.|+.++|..+|=+.+.+.....-.+-......+|..|.
T Consensus 2 v~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr 58 (65)
T PF08154_consen 2 VQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEELR 58 (65)
T ss_pred EEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEee
Confidence 5677777766 222 26899999999999988876221234444566667777664
No 177
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=34.60 E-value=1.5e+02 Score=25.69 Aligned_cols=64 Identities=20% Similarity=0.102 Sum_probs=42.7
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
=+|+|=|+.|+ .+.++.++|+.||=-.|.. ..|.-.- .---+|+.. --++.+++|++|.+.-.
T Consensus 360 ~~i~vfTPkG~---~~~lp~gst~~DfAy~ih~--~~g~~~~--~a~vng~~v----------~l~~~l~~gd~vei~t~ 422 (683)
T TIGR00691 360 EEIYVFTPKGD---VVELPSGSTPVDFAYAVHT--DVGNKCT--GAKVNGKIV----------PLDKELENGDVVEIITG 422 (683)
T ss_pred CceEEECCCCe---EEEcCCCCCHHHHHHHHhH--HhHhcee--EEEECCEEC----------CCCccCCCCCEEEEEeC
Confidence 35777788886 4699999999998666654 3332211 112567766 33567999999988654
Q ss_pred c
Q 034173 90 N 90 (102)
Q Consensus 90 ~ 90 (102)
+
T Consensus 423 ~ 423 (683)
T TIGR00691 423 K 423 (683)
T ss_pred C
Confidence 4
No 178
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=34.25 E-value=86 Score=19.75 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHhccCCCCCCCceEEEe--CCeecCCCCCCCCCCccccCCCCCCEEEEEEec
Q 034173 31 IKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 31 ~TV~~LK~~Ia~~~~~~ip~~~qrLi~--~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~ 90 (102)
.+..+|+.+..+ +.+++.+.-+|.. .|-.++|++. +. --+.+|+.+.+.+
T Consensus 21 ~sL~eL~~K~~~--~l~~~~~~~~lvL~eDGT~VddEey-----F~---tLp~nT~lm~L~~ 72 (78)
T PF02017_consen 21 SSLEELLEKACD--KLQLPEEPVRLVLEEDGTEVDDEEY-----FQ---TLPDNTVLMLLEK 72 (78)
T ss_dssp SSHHHHHHHHHH--HHT-SSSTCEEEETTTTCBESSCHH-----HC---CSSSSEEEEEEES
T ss_pred CCHHHHHHHHHH--HhCCCCcCcEEEEeCCCcEEccHHH-----Hh---hCCCCCEEEEECC
Confidence 589999999998 8888866666654 7777765432 22 2345677766665
No 179
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=33.32 E-value=85 Score=19.81 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 9 SVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 9 ~i~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
+.+|+++.+.++.. .+.++++.||.+.
T Consensus 2 ~~~v~~~~~~~~~~-~~~~~~g~tLLda 28 (97)
T TIGR02008 2 TYKVTLVNPDGGEE-TIECPDDQYILDA 28 (97)
T ss_pred eEEEEEEECCCCEE-EEEECCCCcHHHH
Confidence 46777876777655 7899999999885
No 180
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=32.48 E-value=1.3e+02 Score=19.03 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-eCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi-~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
.+|++-+-....+..++|+..+-...+-.-.+| ..++|+..--+| -.|--+....+ -...-++.|+.+.+.=
T Consensus 5 FkitltSdp~lpfkvlsVpE~aPftAvlkfaAE--eFkv~~~TsAiiTndGvGINP~qt-----AGnvflkhgselrliP 77 (82)
T cd01766 5 FKITLTSDPKLPFKVLSVPESTPFTAVLKFAAE--EFKVPAATSAIITNDGIGINPAQT-----AGNVFLKHGSELRLIP 77 (82)
T ss_pred EEEEecCCCCCcceEEeccccCchHHHHHHHHH--hcCCCccceeEEecCccccChhhc-----ccceeeecCCEeeecc
Confidence 445444433344456799998877777667777 888888776665 45555555555 6777788888887754
Q ss_pred e
Q 034173 89 F 89 (102)
Q Consensus 89 ~ 89 (102)
|
T Consensus 78 R 78 (82)
T cd01766 78 R 78 (82)
T ss_pred c
Confidence 4
No 181
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=31.93 E-value=46 Score=18.90 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=12.7
Q ss_pred ccccCCCCCCEEEEEEec
Q 034173 73 DVYLQLSNGGNINISLFN 90 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~ 90 (102)
...++++.|++|++.++.
T Consensus 42 ~~~L~L~~G~~V~~~ik~ 59 (64)
T PF03459_consen 42 AEELGLKPGDEVYASIKA 59 (64)
T ss_dssp HHHCT-STT-EEEEEE-G
T ss_pred HHHcCCCCCCEEEEEEeh
Confidence 667789999999998876
No 182
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=31.11 E-value=1.5e+02 Score=26.08 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=42.8
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEec
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~ 90 (102)
+|+|=|+.|+ .+.++.++|+.|+=-.|.. ..|.-...= -.+|+.. --++.+++|++|.+.-.+
T Consensus 405 ~V~VfTPkG~---~~~Lp~gaT~lDfAy~iHt--~iG~~~~gA--kvng~~v----------~l~~~L~~GD~VeIits~ 467 (743)
T PRK10872 405 RVYVFTPKGD---VVDLPAGSTPLDFAYHIHS--DVGHRCIGA--KIGGRIV----------PFTYQLQMGDQIEIITQK 467 (743)
T ss_pred eEEEECCCCC---eEEcCCCCcHHHHHHHHhH--HHHhhceEE--EECCEEC----------CCCcCCCCCCEEEEEeCC
Confidence 4788889986 4799999999999666654 333211111 2567666 335679999999876543
No 183
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=31.05 E-value=1.4e+02 Score=18.61 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=30.0
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEE
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL 55 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrL 55 (102)
..++|++.+..+..+ -=..+.++.+|++.++. ..+++..+..+
T Consensus 30 ~~i~I~I~tarPg~v---IG~~G~~i~~L~~~L~k--~~~~~~~~i~v 72 (81)
T cd02413 30 TRTEIIIRATRTQNV---LGEKGRRIRELTSLVQK--RFNFPEGSVEL 72 (81)
T ss_pred CeEEEEEEeCCCceE---ECCCchhHHHHHHHHHH--HhCCCCCeEEE
Confidence 446777776554322 22456899999999998 88887777655
No 184
>TIGR02609 doc_partner putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids.
Probab=30.54 E-value=45 Score=20.32 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=14.7
Q ss_pred ccccCCCCCCEEEEEEec
Q 034173 73 DVYLQLSNGGNINISLFN 90 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~ 90 (102)
+..+|+..|++|.+.+.+
T Consensus 19 ~~~lgl~~Gd~v~v~~~~ 36 (74)
T TIGR02609 19 LESLGLKEGDTLYVDEEE 36 (74)
T ss_pred HHHcCcCCCCEEEEEEEC
Confidence 677899999999887654
No 185
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=29.77 E-value=22 Score=21.86 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=14.1
Q ss_pred ccccCCCCCCEEEEEEecCCCceeeEec
Q 034173 73 DVYLQLSNGGNINISLFNLDDLSFQFEF 100 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~~~~~~~~ 100 (102)
-.+|-|..||.|.+.+....+.+..|.+
T Consensus 8 ~~~y~l~pGD~l~i~v~~~~~l~~~~~V 35 (82)
T PF02563_consen 8 PPEYRLGPGDVLRISVFGWPELSGEYTV 35 (82)
T ss_dssp T------TT-EEEEEETT-HHHCCSEE-
T ss_pred CCCCEECCCCEEEEEEecCCCcccceEE
Confidence 4678899999999999877665555544
No 186
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=28.79 E-value=1.4e+02 Score=19.75 Aligned_cols=54 Identities=7% Similarity=0.141 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHhccCCC---CCCCceEEEeCCeecCCCC-CCCCCCccccCCCCCCEEEEEEecCC
Q 034173 31 IKVRDLRKLIATSSANH---LPIENLRLVFRGKVLDDTQ-DDDDRDDVYLQLSNGGNINISLFNLD 92 (102)
Q Consensus 31 ~TV~~LK~~Ia~~~~~~---ip~~~qrLi~~Gk~L~D~~-t~~~~~L~~~~I~~g~ti~l~~~~~~ 92 (102)
.|+.++-+.+.+ +.+ +.+-.+-.|+.|+.+.... . |-.+.+..+ ++.+.++..+
T Consensus 31 ~t~~~~l~~l~~--~l~lh~VevIg~E~I~A~~ll~~~~~~-----L~H~~~~~~-~l~l~vrs~~ 88 (104)
T PF14807_consen 31 RTLPEFLQRLQQ--KLRLHVVEVIGNEGIFACQLLNSSPVC-----LLHCRVNAG-TLDLWVRSSD 88 (104)
T ss_pred CCHHHHHHHHHH--hcCceEEEEeCccceeeeeccCCCCeE-----EEEEEecCC-eEEEEEEcCC
Confidence 566666656655 444 3344468899999998777 6 999999888 9999998864
No 187
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=28.74 E-value=1.4e+02 Score=20.20 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=32.4
Q ss_pred CcEEEEEEcCCCCCc-eEEEecCCCcHHHHHHHHHhccCCCCC
Q 034173 8 ESVEITVKTIGPAPP-SRLSVSSPIKVRDLRKLIATSSANHLP 49 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~-~~l~v~~~~TV~~LK~~Ia~~~~~~ip 49 (102)
..|..++...+++.. .++.|+.++|+.++-+.+-+ +..+.
T Consensus 22 gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLe--KFk~d 62 (112)
T cd01782 22 GVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSE--KFRPD 62 (112)
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHH--Hhccc
Confidence 568999998777644 37999999999999999987 77643
No 188
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.98 E-value=48 Score=25.33 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.7
Q ss_pred cccCCCCCCEEEEEEecC
Q 034173 74 VYLQLSNGGNINISLFNL 91 (102)
Q Consensus 74 ~~~~I~~g~ti~l~~~~~ 91 (102)
-++|+++|.||.|.++|.
T Consensus 148 lDlgFKEGeTIkinikn~ 165 (253)
T KOG2500|consen 148 LDLGFKEGETIKINIKNI 165 (253)
T ss_pred ccccccCCcEEEEEeecc
Confidence 358999999999999973
No 189
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=27.64 E-value=83 Score=26.98 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=51.9
Q ss_pred EEEEEE--cCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEE--e----CCeecCCCCCCCCCCccccCCCC
Q 034173 10 VEITVK--TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLV--F----RGKVLDDTQDDDDRDDVYLQLSN 80 (102)
Q Consensus 10 i~I~vK--~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrLi--~----~Gk~L~D~~t~~~~~L~~~~I~~ 80 (102)
=+++|| +-+|... .+.|+..+|++++=+++++ +.|+..+. ..|+ | =-|.++|.+. ==+.|+.+....
T Consensus 187 rklvVKvfseDgask-sL~Vder~tardV~~lL~e--KnH~~~d~~W~LvEh~P~L~iER~fEDHEl-VVEvls~W~~ds 262 (622)
T KOG3751|consen 187 RKLVVKVFSEDGASK-SLLVDERMTARDVCQLLAE--KNHCADDEDWCLVEHYPHLQIERVFEDHEL-VVEVLSMWTQDS 262 (622)
T ss_pred cceeEEEEccCCcee-eEeecccccHHHHHHHHHH--hhhhhcccceeeeeecchhhhhhhhhhHHH-HHHHHhhcccCC
Confidence 345555 5566666 8999999999999999998 88865443 5553 2 2244555442 002256677888
Q ss_pred CCEEEEEEecCCCce
Q 034173 81 GGNINISLFNLDDLS 95 (102)
Q Consensus 81 g~ti~l~~~~~~~~~ 95 (102)
++.+++. ++++..+
T Consensus 263 eNK~lF~-k~~~Kye 276 (622)
T KOG3751|consen 263 ENKLLFR-KNPAKYE 276 (622)
T ss_pred CceeEEe-ecchhcc
Confidence 8888864 4444333
No 190
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=27.40 E-value=25 Score=25.65 Aligned_cols=27 Identities=7% Similarity=0.023 Sum_probs=18.6
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~ 52 (102)
-+.|.++.|..++|++|.+ +.|++...
T Consensus 136 ~f~v~~gE~f~~tK~Rl~~--rlgv~~ke 162 (213)
T PF14533_consen 136 LFVVKPGETFSDTKERLQK--RLGVSDKE 162 (213)
T ss_dssp EEEEETT--HHHHHHHHHH--HH---HHH
T ss_pred EEEeeCCCcHHHHHHHHHH--HhCCChhh
Confidence 4678999999999999998 99988544
No 191
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=27.01 E-value=1.6e+02 Score=18.44 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=35.4
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEE--EeCCeecCCCCCCCCCCccccCCCCCCEEEEEEec
Q 034173 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFN 90 (102)
Q Consensus 25 l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrL--i~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~ 90 (102)
.-|.. .|..+|+.+..+ +.+++...-+| .-.|-.++|++- +. --+.+|+.+.+..
T Consensus 14 ~GV~A-~sL~eL~~K~~~--~l~l~~~~~~l~L~eDGT~VddEey-----F~---tLp~nt~l~~L~~ 70 (74)
T smart00266 14 KGVAA-SSLEELLSKVCD--KLALPDSPVTLVLEEDGTIVDDEEY-----FQ---TLPDNTELMALEK 70 (74)
T ss_pred EEEEc-CCHHHHHHHHHH--HhCCCCCCcEEEEecCCcEEccHHH-----Hh---cCCCCcEEEEEcC
Confidence 34444 489999999998 88888555555 448888865543 22 2344566555543
No 192
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=26.59 E-value=85 Score=22.67 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCCccccCCCCCCEEEEEEecCCCcee
Q 034173 70 DRDDVYLQLSNGGNINISLFNLDDLSF 96 (102)
Q Consensus 70 ~~~L~~~~I~~g~ti~l~~~~~~~~~~ 96 (102)
+..|-.+++..|.+|.|.++.+++.+|
T Consensus 50 ~~~llG~N~N~G~~I~lrLR~~~~~~f 76 (186)
T PF08325_consen 50 GERLLGLNVNKGEKICLRLRTPDDGGF 76 (186)
T ss_pred CCCCcceecCCCcEEEEEeCCCCCCCE
Confidence 334778999999999999999987555
No 193
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=26.45 E-value=1.3e+02 Score=18.39 Aligned_cols=28 Identities=14% Similarity=0.072 Sum_probs=20.5
Q ss_pred ccccCCCCCCEEEEEEecCCCceeeEec
Q 034173 73 DVYLQLSNGGNINISLFNLDDLSFQFEF 100 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~~~~~~~~ 100 (102)
|.+.|+..|..|.+.-+.|-+--+.|.+
T Consensus 26 L~~mGl~pG~~V~v~~~aP~gdPi~i~v 53 (74)
T PRK09555 26 LLSLGMLPGSSFNVVRVAPLGDPIHIET 53 (74)
T ss_pred HHHcCCCCCCEEEEEEECCCCCCEEEEE
Confidence 7788888998888877777555555544
No 194
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=25.99 E-value=85 Score=19.19 Aligned_cols=19 Identities=16% Similarity=-0.031 Sum_probs=12.0
Q ss_pred ccccCCCCCCEEEEEEecC
Q 034173 73 DVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~ 91 (102)
..+++|+.||.+.+.+...
T Consensus 69 v~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHCT--TT-EEEEEE-SS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 5678999999999988753
No 195
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.97 E-value=1.1e+02 Score=19.51 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=25.8
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEE
Q 034173 18 GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRL 55 (102)
Q Consensus 18 ~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~-qrL 55 (102)
+|... ...+++..|-.+|.+++.+ ....+.++ ..+
T Consensus 8 ~gdi~-it~~d~~~s~e~L~~~v~~--~c~~~~~q~ft~ 43 (83)
T cd06404 8 NGDIM-ITSIDPSISLEELCNEVRD--MCRFHNDQPFTL 43 (83)
T ss_pred cCcEE-EEEcCCCcCHHHHHHHHHH--HhCCCCCCcEEE
Confidence 44444 7889999999999999988 77665543 444
No 196
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=25.06 E-value=46 Score=30.55 Aligned_cols=58 Identities=7% Similarity=-0.134 Sum_probs=47.4
Q ss_pred ecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEecC
Q 034173 27 VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 27 v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~ 91 (102)
+-..-++.-.|.++.+ .+|||...++|++-|..++++.. +..|+...+.+.+..+..+
T Consensus 341 ~~~~~~~~~~~p~~~~--qtgipi~~~~l~~vg~~~n~d~P-----~s~~~~e~~~~~p~~~asp 398 (1143)
T KOG4248|consen 341 HVVRPMSHYTTPMVLQ--QTGIPIQINVLTTVGMTGNGDRP-----PSTPNAEAPPPGPGQAASP 398 (1143)
T ss_pred eecchhhhccCceeee--cccccccccceeeecccccCCCC-----CCccccccCCCCCccccCc
Confidence 3344455555888987 99999999999999999999999 9999999988888766554
No 197
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=25.06 E-value=1.9e+02 Score=18.39 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=31.5
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHHHH---HHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDLRK---LIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~LK~---~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
+|-.-.+..+....++|+.++||.+-=+ .... ...+..+..++=--||...- +.-+++||-|-+
T Consensus 4 eV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~--~p~idl~~~~vGIfGk~~~~----------d~~L~~GDRVEI 70 (84)
T PF03658_consen 4 EVAYALPERQVILTLEVPEGTTVAQAIEASGILEQ--FPEIDLEKNKVGIFGKLVKL----------DTVLRDGDRVEI 70 (84)
T ss_dssp EEEEEETTCEEEEEEEEETT-BHHHHHHHHTHHHH---TT--TTTSEEEEEE-S--T----------T-B--TT-EEEE
T ss_pred EEEEECCCeEEEEEEECCCcCcHHHHHHHcCchhh--CcccCcccceeeeeeeEcCC----------CCcCCCCCEEEE
Confidence 3333344555556789999999987533 2222 34567778888444555532 234788887764
No 198
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=24.56 E-value=42 Score=27.28 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=17.9
Q ss_pred CccccCCCCCCEEEEEEecCCCceeeEe
Q 034173 72 DDVYLQLSNGGNINISLFNLDDLSFQFE 99 (102)
Q Consensus 72 ~L~~~~I~~g~ti~l~~~~~~~~~~~~~ 99 (102)
.|...|+++||+|.+ .+.+|.|.
T Consensus 401 ~l~~~g~~~gd~v~i-----~~~~f~~~ 423 (424)
T PRK12297 401 ALREAGAKDGDTVRI-----GDFEFEFV 423 (424)
T ss_pred HHHHCCCCCCCEEEE-----CCEEEEEe
Confidence 467889999999998 46666653
No 199
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=24.10 E-value=1.1e+02 Score=18.00 Aligned_cols=18 Identities=6% Similarity=0.095 Sum_probs=15.5
Q ss_pred ccccCCCCCCEEEEEEec
Q 034173 73 DVYLQLSNGGNINISLFN 90 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~ 90 (102)
|++.|+..|+.|.|.+..
T Consensus 33 L~~aGF~~G~~v~V~v~~ 50 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMP 50 (57)
T ss_pred hHHhCCCCCCEEEEEEEC
Confidence 677899999999998865
No 200
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=23.87 E-value=1.2e+02 Score=22.60 Aligned_cols=30 Identities=13% Similarity=-0.003 Sum_probs=26.3
Q ss_pred ccccCCCCCCEEEEEEecCCCceeeEecCC
Q 034173 73 DVYLQLSNGGNINISLFNLDDLSFQFEFGS 102 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~~~~~~~~~~~~ 102 (102)
+--||-..++.|.+.++..++.-+.+.+|+
T Consensus 112 vWV~G~n~~h~L~v~lrD~~G~~~~l~~G~ 141 (217)
T PF04620_consen 112 VWVYGDNYPHWLEVLLRDAKGEVHQLPLGS 141 (217)
T ss_pred EEEECCCCCceEEEEEEcCCCCEEEEEeee
Confidence 445688889999999999999999999984
No 201
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=23.50 E-value=1.4e+02 Score=16.25 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=31.4
Q ss_pred cCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEE
Q 034173 16 TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINI 86 (102)
Q Consensus 16 ~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l 86 (102)
.++|+ .++++.+.|+.++-+.+.. +++.+......+|+..+-+ .-+.+|++|-+
T Consensus 5 ~~~g~---~~~~~~~~t~~~~~~~~~~----~~~~~~va~~vng~~vdl~----------~~l~~~~~ve~ 58 (60)
T cd01668 5 TPKGE---IIELPAGATVLDFAYAIHT----EIGNRCVGAKVNGKLVPLS----------TVLKDGDIVEI 58 (60)
T ss_pred CCCCC---EEEcCCCCCHHHHHHHHCh----HhhhheEEEEECCEECCCC----------CCCCCCCEEEE
Confidence 44554 3678889999996554421 2233334444677776311 34777887654
No 202
>PF09662 Phenyl_P_gamma: Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma); InterPro: IPR014097 Members of this protein family are the gamma subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. The gamma subunit has no known homologues.
Probab=23.47 E-value=90 Score=20.00 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=27.5
Q ss_pred CcEEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe
Q 034173 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF 57 (102)
Q Consensus 8 ~~i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~ 57 (102)
.++++.||++++... . .+-.-+|.+++. ...-.|++.+.-|
T Consensus 18 ~elel~VR~LnPG~~-K------Y~~~~VkA~vSs--dp~~yPd~L~VRf 58 (84)
T PF09662_consen 18 KELELTVRDLNPGIH-K------YTYQWVKAEVSS--DPDKYPDKLQVRF 58 (84)
T ss_pred CEEEEEEEecCcchh-H------HHHHhhhhhhcC--CcccCChheEEec
Confidence 568999998877644 2 234677888876 5555556666655
No 203
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=23.29 E-value=1.3e+02 Score=19.89 Aligned_cols=26 Identities=4% Similarity=0.074 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHH
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDL 36 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~L 36 (102)
|+|++..+.|+.. .+++.++.|+.+.
T Consensus 1 ~~V~fi~~~G~~~-~v~~~~G~tLl~a 26 (117)
T PLN02593 1 ISVTFVDKDGEER-TVKAPVGMSLLEA 26 (117)
T ss_pred CEEEEEcCCCCEE-EEEECCCCcHHHH
Confidence 5777777888776 7899999988875
No 204
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=23.05 E-value=2.2e+02 Score=18.32 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCC--CC--CC-ceEEEeCC--eecCCCCCCCCCCccccCCCCCC
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH--LP--IE-NLRLVFRG--KVLDDTQDDDDRDDVYLQLSNGG 82 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~--ip--~~-~qrLi~~G--k~L~D~~t~~~~~L~~~~I~~g~ 82 (102)
+-|.-+..++-...-+.|+...|+.++-++++.. .-| ++ +. -.|+.++| +.+..+.+ +.+.||.+-+
T Consensus 4 fPl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~H-sVGrRV~~~pg~~lrVr~~g~~~~~p~~~t-----Vaeagl~P~e 77 (85)
T PF06234_consen 4 FPLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHH-SVGRRVAPRPGAPLRVRRQGDTQPFPRSMT-----VAEAGLQPME 77 (85)
T ss_dssp EEEEEEETT-SBEEEEEEETT-BHHHHHHHHHTT-TTTTSS---TTSEEEEEETTTSSEE-TT-B-----GGGHT--TTE
T ss_pred cceeEeeccceEEEEEEeCCCCcHHHHHHHHhhh-hcceecCCCCCCEEEEEecCCCccCCCccE-----ehhcCCCcce
Confidence 3455555555555567999999999999999862 222 22 22 47888999 99988888 9999999988
Q ss_pred EEEEEE
Q 034173 83 NINISL 88 (102)
Q Consensus 83 ti~l~~ 88 (102)
.|-+..
T Consensus 78 ~vev~~ 83 (85)
T PF06234_consen 78 WVEVRF 83 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887654
No 205
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=23.03 E-value=1.4e+02 Score=27.35 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=39.3
Q ss_pred CCCceEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEE-eCCeecCCCCCCCCCCccccCC
Q 034173 19 PAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLV-FRGKVLDDTQDDDDRDDVYLQL 78 (102)
Q Consensus 19 ~~~~~~l~v~~-~~TV~~LK~~Ia~~~~~~ip~~~qrLi-~~Gk~L~D~~t~~~~~L~~~~I 78 (102)
|+.. +++... ..|+.+||..|.. +.|+....|.++ -+|.++.-++. |..|.-
T Consensus 4 Gqal-tFDleaetqT~adLk~aiqk--e~~~aIq~~tfl~egGecmaadkr-----l~e~St 57 (1424)
T KOG4572|consen 4 GQAL-TFDLEAETQTFADLKDAIQK--EVGHAIQDLTFLDEGGECMAADKR-----LAEIST 57 (1424)
T ss_pred Ccee-EEeecceeehHHHHHHHHHH--HhchhhceeeeeecCCcCcccccc-----hhhhcc
Confidence 4444 666664 4789999999988 999998888886 57788865555 888773
No 206
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=22.95 E-value=1e+02 Score=20.36 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=20.5
Q ss_pred EEEeCCeecCCCCCCCCCCccccCCCCCC-EEEEEE
Q 034173 54 RLVFRGKVLDDTQDDDDRDDVYLQLSNGG-NINISL 88 (102)
Q Consensus 54 rLi~~Gk~L~D~~t~~~~~L~~~~I~~g~-ti~l~~ 88 (102)
.|-|.||.|..+.+ |++|-=++.- .|+|-+
T Consensus 3 ~LW~aGK~l~~~k~-----l~dy~GkNEKtKiivKl 33 (98)
T PF11069_consen 3 QLWWAGKELQRGKK-----LSDYIGKNEKTKIIVKL 33 (98)
T ss_pred eEEeccccccCCCc-----HHHhcCCCcceeEEEEe
Confidence 46789999988888 9999444433 344444
No 207
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=22.63 E-value=1.1e+02 Score=15.80 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=13.3
Q ss_pred CCcHHHHHHHHHhccCCCCCCC
Q 034173 30 PIKVRDLRKLIATSSANHLPIE 51 (102)
Q Consensus 30 ~~TV~~LK~~Ia~~~~~~ip~~ 51 (102)
..||.+||+...+ .|+|..
T Consensus 3 ~l~v~eLk~~l~~---~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKE---RGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHH---TTS-ST
T ss_pred cCcHHHHHHHHHH---CCCCCC
Confidence 4789999998874 556543
No 208
>PF14178 YppF: YppF-like protein
Probab=22.43 E-value=76 Score=19.17 Aligned_cols=20 Identities=10% Similarity=0.310 Sum_probs=15.9
Q ss_pred CcHHHHHHHHHhccCCCCCCCc
Q 034173 31 IKVRDLRKLIATSSANHLPIEN 52 (102)
Q Consensus 31 ~TV~~LK~~Ia~~~~~~ip~~~ 52 (102)
++|.+||++..+ ..++.|+.
T Consensus 1 M~l~eLk~~F~~--~k~y~p~~ 20 (60)
T PF14178_consen 1 MNLHELKQKFMQ--KKKYEPED 20 (60)
T ss_pred CCHHHHHHHHHH--HhccCccc
Confidence 468899999988 77777764
No 209
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.16 E-value=64 Score=23.47 Aligned_cols=57 Identities=35% Similarity=0.451 Sum_probs=32.8
Q ss_pred HHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEE-EEEecCCCcee
Q 034173 33 VRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNIN-ISLFNLDDLSF 96 (102)
Q Consensus 33 V~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~-l~~~~~~~~~~ 96 (102)
..++++++++ +. |++..+...+|+.+.+..-.++-.+ .+++-.+.. .++-|+-+.||
T Consensus 8 lR~~Rk~k~~--k~--~v~~~k~~lr~~~~qttg~~~d~~i---tlK~~p~f~~a~~~npr~es~ 65 (181)
T KOG3249|consen 8 LRDLRKAKAE--KG--PVSTLKMKLRGKALQTTGDGDDLYI---TLKDQPSFIVAVIPNPRAESF 65 (181)
T ss_pred HHHHHHHhhc--cC--chhhcchHHHHHHhcCCCCCcccee---eeecCCcceeeecCCCchhhc
Confidence 4566666654 43 9999999999999976543222211 233333333 34455555555
No 210
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=21.96 E-value=92 Score=16.97 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=14.8
Q ss_pred ccccCCCCCCEEEEEEec
Q 034173 73 DVYLQLSNGGNINISLFN 90 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~ 90 (102)
...++|+.|+.|.+.+..
T Consensus 16 ~~~l~l~~Gd~v~i~~~~ 33 (47)
T PF04014_consen 16 REKLGLKPGDEVEIEVEG 33 (47)
T ss_dssp HHHTTSSTTTEEEEEEET
T ss_pred HHHcCCCCCCEEEEEEeC
Confidence 556799999999988765
No 211
>PF08775 ParB: ParB family; InterPro: IPR014884 ParB is a component of the par system which mediates accurate DNA partition during cell division. It recognises A-box and B-box DNA motifs. ParB forms an asymmetric dimer with 2 extended helix-turn-helix (HTH) motifs that bind to A-boxes. The HTH motifs emanate from a beta sheet coiled coil DNA binding module []. Both DNA binding elements are free to rotate around a flexible linker, this enables them to bind to complex arrays of A- and B-box elements on adjacent DNA arms of the looped partition site []. ; PDB: 1ZX4_A 2NTZ_B.
Probab=21.67 E-value=39 Score=23.11 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=9.0
Q ss_pred cCCCceeeEecC
Q 034173 90 NLDDLSFQFEFG 101 (102)
Q Consensus 90 ~~~~~~~~~~~~ 101 (102)
+.++-.|+||||
T Consensus 96 ~~kgR~vsYEF~ 107 (127)
T PF08775_consen 96 DAKGRKVSYEFS 107 (127)
T ss_dssp --ETTEEEEEEE
T ss_pred eccCCeEEEEec
Confidence 347889999998
No 212
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=21.53 E-value=62 Score=17.28 Aligned_cols=14 Identities=14% Similarity=0.517 Sum_probs=10.1
Q ss_pred CCCcHHHHHHHHHh
Q 034173 29 SPIKVRDLRKLIAT 42 (102)
Q Consensus 29 ~~~TV~~LK~~Ia~ 42 (102)
.+.||.+||..+.+
T Consensus 2 ~sltV~~Lk~iL~~ 15 (35)
T PF12949_consen 2 KSLTVAQLKRILDE 15 (35)
T ss_dssp TT--SHHHHHHHHH
T ss_pred CcCcHHHHHHHHHH
Confidence 46799999999986
No 213
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=21.45 E-value=2.8e+02 Score=24.21 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=41.0
Q ss_pred EEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEE--EeCCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 11 ~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrL--i~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
+|+|=|+.|+. +++|.++|+.|+==.| |-....... --+|+... =+|.+++||+|.+.-
T Consensus 387 ~v~VfTP~G~v---~~LP~GaT~lDFAY~i------Ht~iG~~c~gAkVNg~~vp----------L~~~L~~Gd~VeIiT 447 (702)
T PRK11092 387 EIYVFTPEGRI---VELPAGATPVDFAYAV------HTDIGHACVGARVDRQPYP----------LSQPLTSGQTVEIIT 447 (702)
T ss_pred eEEEECCCCCE---EeCCCCCchhhhhHhh------CchhhceeEEEEECCEECC----------CCccCCCCCEEEEEe
Confidence 47888998864 6999999999984444 333333332 24666662 256799999998765
Q ss_pred e
Q 034173 89 F 89 (102)
Q Consensus 89 ~ 89 (102)
.
T Consensus 448 ~ 448 (702)
T PRK11092 448 A 448 (702)
T ss_pred C
Confidence 4
No 214
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.44 E-value=1.6e+02 Score=26.55 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=41.9
Q ss_pred eEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe----CCeecCCCCCCCCCCccccCCCCCCEEEEEE
Q 034173 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF----RGKVLDDTQDDDDRDDVYLQLSNGGNINISL 88 (102)
Q Consensus 23 ~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~----~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~ 88 (102)
..+.|+..+++..+|+.|++ ..+++.+-.++.- +|.-+ ..-++.+|+ ++-+|.+|.+-+
T Consensus 879 ~kl~Vd~rmr~~AFKkHiE~--~i~V~~~HFKi~R~~~~N~~~~---S~~~NetLs--~~~~~~~iTI~L 941 (1203)
T KOG4598|consen 879 HKLDVDSRMRVLAFKKHVEE--QLEVDKDHFKIVRHASDNGSEA---SFMDNETLS--GAFQSCFITIKL 941 (1203)
T ss_pred eeeeccceeeHHHHHHHHHH--HhCcChhHeEEEEEecCCcchh---hhccchhhh--hhcccceEEEEe
Confidence 36888999999999999999 9999999988752 22212 112233476 566778888766
No 215
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=21.26 E-value=81 Score=22.17 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHhccCCCCCCCceEEEeCC
Q 034173 30 PIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (102)
Q Consensus 30 ~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~G 59 (102)
..++.++|++|....+.|++|.+.-.+.+.
T Consensus 27 K~~~ddvkeqI~K~akKGltpsqIGviLRD 56 (151)
T KOG0400|consen 27 KLTADDVKEQIYKLAKKGLTPSQIGVILRD 56 (151)
T ss_pred hcCHHHHHHHHHHHHHcCCChhHceeeeec
Confidence 378999999999877889999987665543
No 216
>PRK08453 fliD flagellar capping protein; Validated
Probab=21.15 E-value=1.2e+02 Score=26.35 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=21.5
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHh
Q 034173 18 GPAPPSRLSVSSPIKVRDLRKLIAT 42 (102)
Q Consensus 18 ~~~~~~~l~v~~~~TV~~LK~~Ia~ 42 (102)
+|+.+ .++|+...|+.+|+++|-.
T Consensus 136 ~G~~~-sIdi~~gtTL~~L~~~INd 159 (673)
T PRK08453 136 QGKDY-AIDIKAGMTLGDVAQSITD 159 (673)
T ss_pred CCEEE-EEEeCCCCcHHHHHHHhcC
Confidence 47777 8999999999999999985
No 217
>COG1925 FruB Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]
Probab=21.01 E-value=1.5e+02 Score=18.84 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=41.4
Q ss_pred EEEEEEcCCCCCceEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEe
Q 034173 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLF 89 (102)
Q Consensus 10 i~I~vK~~~~~~~~~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~ 89 (102)
.++.|+.+.| +...|.+.+-.+ ..++ ..+.+|.+.|+...-... =.|-.+|+..|+.|.|...
T Consensus 4 ~~~~i~n~~G-----LHARPAa~lv~~--------a~~f-~s~i~l~~~g~~~~akSi---m~lm~Lg~~~G~~i~i~a~ 66 (88)
T COG1925 4 KTVTIKNKNG-----LHARPAAKLVKL--------ASKF-DSEITLTNNGKEANAKSI---MGLMALGAKKGDEIELSAE 66 (88)
T ss_pred eEEEEECCCc-----cchhhHHHHHHH--------HhcC-CceEEEEeCCEEechHhH---HHHHHhCcCCCCEEEEEEe
Confidence 4556666665 344555433322 1223 556788888887742221 1166789999999999998
Q ss_pred cCCC
Q 034173 90 NLDD 93 (102)
Q Consensus 90 ~~~~ 93 (102)
..|+
T Consensus 67 G~de 70 (88)
T COG1925 67 GEDE 70 (88)
T ss_pred CccH
Confidence 7764
No 218
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=20.94 E-value=39 Score=21.14 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=11.3
Q ss_pred ccccCCCCCCEEEEE
Q 034173 73 DVYLQLSNGGNINIS 87 (102)
Q Consensus 73 L~~~~I~~g~ti~l~ 87 (102)
...+||++|+.|.|.
T Consensus 39 A~~~Gi~~Gd~V~v~ 53 (110)
T PF01568_consen 39 AAKLGIKDGDWVRVS 53 (110)
T ss_dssp HHHCT--TTCEEEEE
T ss_pred HHHhcCcCCCEEEEE
Confidence 788899999999885
No 219
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=20.83 E-value=37 Score=21.33 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=12.5
Q ss_pred CCccccCCCCCCEEEEEEecCCCceeeEe
Q 034173 71 RDDVYLQLSNGGNINISLFNLDDLSFQFE 99 (102)
Q Consensus 71 ~~L~~~~I~~g~ti~l~~~~~~~~~~~~~ 99 (102)
+.|....+..... .+.+.-.+|.+|+|+
T Consensus 57 g~L~~L~~~~~~~-~~~~~R~~DG~f~~~ 84 (85)
T PF04225_consen 57 GQLTALRYERSPK-TTLYTRQSDGSFSYQ 84 (85)
T ss_dssp S-EEEEEEEEETT-EEEEEE-TTS-EEE-
T ss_pred CCEEEEEEEcCCc-EEEEEEeCCCCEEeC
Confidence 3355555444443 333444467788774
No 220
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=20.78 E-value=1.1e+02 Score=19.95 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=17.5
Q ss_pred ccccCCCCCCEEEEEEecC------CCceeeEecCC
Q 034173 73 DVYLQLSNGGNINISLFNL------DDLSFQFEFGS 102 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~------~~~~~~~~~~~ 102 (102)
|++|| .+||+.--|. ...||+||=|.
T Consensus 40 LaDfG----~~iHiAKv~~RYv~liEgd~~~FEKG~ 71 (91)
T PF13037_consen 40 LADFG----ETIHIAKVNDRYVLLIEGDSLQFEKGF 71 (91)
T ss_pred HHhhc----cceeEEEECCEEEEEEEcceEEEccCC
Confidence 77775 4577665443 57799998773
No 221
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=20.70 E-value=47 Score=20.77 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=11.3
Q ss_pred ccccCCCCCCEEEE
Q 034173 73 DVYLQLSNGGNINI 86 (102)
Q Consensus 73 L~~~~I~~g~ti~l 86 (102)
-..+.++||+|||+
T Consensus 7 ~ksi~LkDGstvyi 20 (73)
T PF11525_consen 7 KKSIPLKDGSTVYI 20 (73)
T ss_dssp EEEEEBTTSEEEEE
T ss_pred heeEecCCCCEEEE
Confidence 45667999999996
No 222
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=20.64 E-value=2.2e+02 Score=17.45 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=31.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-eCCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 034173 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGGNINIS 87 (102)
Q Consensus 24 ~l~v~~~~TV~~LK~~Ia~~~~~~ip~~~qrLi-~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~ 87 (102)
.+.++.++|+.|+=.+|..-...++-.. +. -+|+.. =.+|-+++||+|.+.
T Consensus 24 ~~~l~~GaTv~D~A~~IHtdi~~~f~~A---i~~k~~~~v----------g~~~~L~dgDvV~Ii 75 (76)
T cd01669 24 AFLLPKGSTARDLAYAIHTDIGDGFLHA---IDARTGRRV----------GEDYELKHRDVIKIV 75 (76)
T ss_pred eEEECCCCCHHHHHHHHHHHHHhcceee---EEeeCCEEe----------CCCcEecCCCEEEEe
Confidence 5788999999999888754111111101 11 134333 346679999999874
No 223
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=20.47 E-value=1.9e+02 Score=18.20 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHhccCCCCCCCceEEEeCCeecCCCCCCCCCCccccCCCCCCEEEEEEecC
Q 034173 31 IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 31 ~TV~~LK~~Ia~~~~~~ip~~~qrLi~~Gk~L~D~~t~~~~~L~~~~I~~g~ti~l~~~~~ 91 (102)
.|-.+.++.+. +.++-+.+.-.|... +-. ...||++.|+.|-+.=+..
T Consensus 18 Ls~eE~~~lL~---~y~i~~~qLP~I~~~-----DPv-----~r~~g~k~GdVvkI~R~S~ 65 (79)
T PRK09570 18 LSEEEAKKLLK---EYGIKPEQLPKIKAS-----DPV-----VKAIGAKPGDVIKIVRKSP 65 (79)
T ss_pred CCHHHHHHHHH---HcCCCHHHCCceecc-----Chh-----hhhcCCCCCCEEEEEECCC
Confidence 56677777765 466666664444433 333 7888999999999876654
No 224
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=20.23 E-value=89 Score=17.79 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=15.8
Q ss_pred ccccCCCCCCEEEEEEecC
Q 034173 73 DVYLQLSNGGNINISLFNL 91 (102)
Q Consensus 73 L~~~~I~~g~ti~l~~~~~ 91 (102)
+.+.+++.|+.+++.++..
T Consensus 44 ~~~l~l~~G~~v~~~ik~~ 62 (69)
T TIGR00638 44 VAELGLKPGKEVYAVIKAP 62 (69)
T ss_pred HhhCCCCCCCEEEEEEECc
Confidence 6677899999999988764
Done!